R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|1352316|sp|P49592|DR1_ARATH DR1 PROTEIN HOMOLOG >gi|633026|dbj|BAA07288.1|
(D38110) Dr1 [Arabidopsis thaliana] >gi|9759367|dbj|BAB09826.1|
(AB006708) TATA-binding protein-associated phosphoprotein Dr1
protein homolog [Arabidopsis thaliana]
Length = 159
Frame 2 hits (HSPs): ________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 159
0 50 100 150
__________________
Annotated Domains:
DOMO DM01716: CBF-A/NF-YBSUBUNIT 4..117
PFAM CBFD_NFYB_HMF: Histone-like transcriptio 14..82
PRODOM PD002982: CBFA(4) HAP3(2) 14..82
PRODOM PD074625: DR1_ARATH 84..158
__________________
Plus Strand HSPs:
Score = 380 (133.8 bits), Expect = 4.0e-34, P = 4.0e-34
Identities = 75/99 (75%), Positives = 83/99 (83%), Frame = +2
Query: 8 SESNEVCNKEERRTXAPEHVLKALGVLGFGEYIEEVYAAYEQHKLETMQDSLKGAKWSNR 187
SESN+VCNKE++RT APEHVLKAL VLGFGEYIEEVYAAYEQHK ETMQD+ + KW+
Sbjct: 56 SESNDVCNKEDKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHKYETMQDTQRSVKWNPG 115
Query: 188 AEMTEEEALAEQQRMFAEARARMNGGAI--QSKEPEADQ 298
A+MTEEEA AEQQRMFAEARARMNGG Q + PE DQ
Sbjct: 116 AQMTEEEAAAEQQRMFAEARARMNGGVSVPQPEHPETDQ 154
>gi|2129748|pir||S53582 TATA-binding protein-associated phosphoprotein Dr1 -
Arabidopsis thaliana
Length = 159
Frame 2 hits (HSPs): ________________________________
__________________________________________________
Database sequence: | | | | | 159
0 50 100 150
Plus Strand HSPs:
Score = 380 (133.8 bits), Expect = 4.0e-34, P = 4.0e-34
Identities = 75/99 (75%), Positives = 83/99 (83%), Frame = +2
Query: 8 SESNEVCNKEERRTXAPEHVLKALGVLGFGEYIEEVYAAYEQHKLETMQDSLKGAKWSNR 187
SESN+VCNKE++RT APEHVLKAL VLGFGEYIEEVYAAYEQHK ETMQD+ + KW+
Sbjct: 56 SESNDVCNKEDKRTIAPEHVLKALQVLGFGEYIEEVYAAYEQHKYETMQDTQRSVKWNPG 115
Query: 188 AEMTEEEALAEQQRMFAEARARMNGGAI--QSKEPEADQ 298
A+MTEEEA AEQQRMFAEARARMNGG Q + PE DQ
Sbjct: 116 AQMTEEEAAAEQQRMFAEARARMNGGVSVPQPEHPETDQ 154
>gi|11279032|pir||T50504 DR1-like protein - Arabidopsis thaliana
>gi|8346556|emb|CAB93720.1| (AL357612) DR1-like protein
[Arabidopsis thaliana]
Length = 162
Frame 2 hits (HSPs): __________________________________
__________________________________________________
Database sequence: | | | | | 162
0 50 100 150
Plus Strand HSPs:
Score = 357 (125.7 bits), Expect = 1.1e-31, P = 1.1e-31
Identities = 77/107 (71%), Positives = 86/107 (80%), Frame = +2
Query: 8 SESNEVCNKEERRTXAPEHVLKALGVLGFGEYIEEVYAAYEQHKLETMQDSLKGAKWSNR 187
SESNEVCNKE++RT APEHVLKAL VLGFGEY+EEVYAAYEQHK ETM DS + K ++
Sbjct: 56 SESNEVCNKEDKRTIAPEHVLKALQVLGFGEYVEEVYAAYEQHKYETM-DSQRSVKMNSG 114
Query: 188 AEMTEEEALAEQQRMFAEARARMNGGAI-----QSKEPEADQ--SLES 310
AEMTEEEA AEQQRMFAEARARMNGG Q +EP+ Q SL+S
Sbjct: 115 AEMTEEEAAAEQQRMFAEARARMNGGVTVPQPEQLEEPQQQQQTSLQS 162
>gi|4503381 ref|NP_001929.1| down-regulator of transcription 1 [Homo sapiens]
>gi|401162|sp|Q01658|TBAP_HUMAN TATA-BINDING PROTEIN-ASSOCIATED
PHOSPHOPROTEIN (DOWN-REGULATOR OF TRANSCRIPTION 1) (DR1 PROTEIN)
>gi|284070|pir||A43320 TATA-binding protein-associated
phosphoprotein Dr1 - human >gi|181757|gb|AAA58442.1| (M97388) TATA
binding protein-associated phosphoprotein [Homo sapiens]
>gi|12314178|emb|CAC17578.1| (AL137159) dJ713B5.1.1 (own-regulator
of transcription 1, TBP-(TATA box-binding protein) associated
phosphoprotein (negative cofactor 2), isoform 1) [Homo sapiens]
Length = 176
Frame 2 hits (HSPs): _______________________
__________________________________________________
Database sequence: | | | | | 176
0 50 100 150
Plus Strand HSPs:
Score = 178 (62.7 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 41/80 (51%), Positives = 57/80 (71%), Frame = +2
Query: 8 SESNEVCNKEERRTXAPEHVLKALGVLGFGEYIEEVYAAYEQHKLETMQDSLKGAKWSNR 187
SE+NE+CNK E++T +PEHV++AL LGFG YI EV ++ K T+ +LK K S+R
Sbjct: 52 SEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECK--TV--ALKRRKASSR 107
Query: 188 AE---MTEEEALAEQQRMFAEAR 247
E + EEE L +QQ +FA+AR
Sbjct: 108 LENLGIPEEELLRQQQELFAKAR 130
>gi|7446854|pir||JC5365 TBP-binding repressor - African clawed frog
>gi|2114094|dbj|BAA20079.1| (AB003582) Dr1 [Xenopus sp.]
Length = 175
Frame 2 hits (HSPs): _______________________
__________________________________________________
Database sequence: | | | | | 175
0 50 100 150
Plus Strand HSPs:
Score = 178 (62.7 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 41/80 (51%), Positives = 57/80 (71%), Frame = +2
Query: 8 SESNEVCNKEERRTXAPEHVLKALGVLGFGEYIEEVYAAYEQHKLETMQDSLKGAKWSNR 187
SE+NE+CNK E++T +PEHV++AL LGFG YI EV ++ K T+ +LK K S+R
Sbjct: 52 SEANEICNKSEKKTISPEHVIQALESLGFGSYISEVKEVLQECK--TV--ALKRRKASSR 107
Query: 188 AE---MTEEEALAEQQRMFAEAR 247
E + EEE L +QQ +FA+AR
Sbjct: 108 LENLGIPEEELLRQQQELFAKAR 130
>gi|7493068|pir||T40194 probable transcription regulator - fission yeast
(Schizosaccharomyces pombe) >gi|2276351|emb|CAB10797.1| (Z97992)
putative transcriptional regulator [Schizosaccharomyces pombe]
Length = 161
Frame 2 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | | 161
0 50 100 150
Plus Strand HSPs:
Score = 147 (51.7 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 30/82 (36%), Positives = 49/82 (59%), Frame = +2
Query: 8 SESNEVCNKEERRTXAPEHVLKALGVLGFGEYIEEVYAAYEQHKLETMQDSLKGAKWSNR 187
SE+NE+C KE ++T A EH++KAL L F EYI E +HK + K +K+ +
Sbjct: 52 SEANEICEKEAKKTIAAEHIIKALENLEFKEYIAEALEVAAEHKEQQKNREKKSSKFE-Q 110
Query: 188 AEMTEEEALAEQQRMFAEARAR 253
+ ++ +E L +Q+ + + AR R
Sbjct: 111 SGVSRDELLRQQEELLSRARER 132
>gi|7287869|gb|AAF44907.1|AE003406_112 (AE003416) hypothetical protein
[Drosophila melanogaster]
Length = 181
Frame 2 hits (HSPs): _______________________________
__________________________________________________
Database sequence: | | | | | 181
0 50 100 150
Plus Strand HSPs:
Score = 138 (48.6 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 41/111 (36%), Positives = 57/111 (51%), Frame = +2
Query: 8 SESNEVCNKEERRTXAPEHVLKALGVLGFGEYIEEVYAAYEQHKLETMQDSLKGAKWSNR 187
SE+NEVCN ++T EHVL+AL LGF +Y +E A K + + + N
Sbjct: 59 SEANEVCNMRNKKTINAEHVLEALERLGFHDYKQEAEAVLHDCKEVAAKRRRQSTRLENL 118
Query: 188 AEMTEEEALAEQQRMFAEAR---AR--------MNGGAIQSKEPEADQSLES 310
+ EEE L +QQ +FA+AR AR M A+ + P AD S+ S
Sbjct: 119 G-IPEEELLRQQQELFAKAREEQAREEQQQWMSMQAAAMVQRPPLADGSVAS 169
>gi|7298194|gb|AAF53428.1| (AE003646) BG:DS00929.3 gene product [Drosophila
melanogaster] >gi|10242349|gb|AAG15388.1| (AF302257) NC2beta
[Drosophila melanogaster]
Length = 183
Frame 2 hits (HSPs): _______________________________
__________________________________________________
Database sequence: | | | | | 183
0 50 100 150
Plus Strand HSPs:
Score = 138 (48.6 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 41/111 (36%), Positives = 57/111 (51%), Frame = +2
Query: 8 SESNEVCNKEERRTXAPEHVLKALGVLGFGEYIEEVYAAYEQHKLETMQDSLKGAKWSNR 187
SE+NEVCN ++T EHVL+AL LGF +Y +E A K + + + N
Sbjct: 59 SEANEVCNMRNKKTINAEHVLEALERLGFHDYKQEAEAVLHDCKEVAAKRRRQSTRLENL 118
Query: 188 AEMTEEEALAEQQRMFAEAR---AR--------MNGGAIQSKEPEADQSLES 310
+ EEE L +QQ +FA+AR AR M A+ + P AD S+ S
Sbjct: 119 G-IPEEELLRQQQELFAKAREEQAREEQQQWMSMQAAAMVQRPPLADGSVAS 169
>gi|927329|gb|AAB64838.1| (U32274) Ncb2p [Saccharomyces cerevisiae]
Length = 143
Frame 2 hits (HSPs): __________________________________
__________________________________________________
Database sequence: | | | | 143
0 50 100
Plus Strand HSPs:
Score = 129 (45.4 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 31/98 (31%), Positives = 61/98 (62%), Frame = +2
Query: 8 SESNEVCNKEERRTXAPEHVLKALGVLGFGEYI---EEVYAAYE-QHKLETMQDSLKGAK 175
S ++E+ + E ++T APEHV+KAL L + E+I EE+ ++ K++ +DS K
Sbjct: 47 SMASEMADNEAKKTIAPEHVIKALEELEYNEFIPFLEEILLNFKGSQKVKETRDS----K 102
Query: 176 WSNRAEMTEEEALAEQQRMFAEARARMNGGAIQSKEPEADQS 301
+ ++ ++EEE L +Q+ +F ++R+R++ ++ D S
Sbjct: 103 FK-KSGLSEEELLRQQEELFRQSRSRLHHNSVSDPVKSEDSS 143
>gi|6320605 ref|NP_010685.1| repressor of class II transcription; Ncb2p
[Saccharomyces cerevisiae] >gi|2131465|pir||S69694 hypothetical
protein YDR397c - yeast (Saccharomyces cerevisiae)
>gi|1666487|emb|CAA70461.1| (Y09266) transcription factor
[Saccharomyces cerevisiae] >gi|1928868|gb|AAB51375.1| (U91948)
transcriptional repressor Dr1p [Saccharomyces cerevisiae]
Length = 146
Frame 2 hits (HSPs): __________________________________
__________________________________________________
Database sequence: | | | | 146
0 50 100
Plus Strand HSPs:
Score = 129 (45.4 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 31/98 (31%), Positives = 61/98 (62%), Frame = +2
Query: 8 SESNEVCNKEERRTXAPEHVLKALGVLGFGEYI---EEVYAAYE-QHKLETMQDSLKGAK 175
S ++E+ + E ++T APEHV+KAL L + E+I EE+ ++ K++ +DS K
Sbjct: 50 SMASEMADNEAKKTIAPEHVIKALEELEYNEFIPFLEEILLNFKGSQKVKETRDS----K 105
Query: 176 WSNRAEMTEEEALAEQQRMFAEARARMNGGAIQSKEPEADQS 301
+ ++ ++EEE L +Q+ +F ++R+R++ ++ D S
Sbjct: 106 FK-KSGLSEEELLRQQEELFRQSRSRLHHNSVSDPVKSEDSS 146
>gi|115842|sp|P25210|CBFA_PETMA CCAAT-BINDING TRANSCRIPTION FACTOR SUBUNIT A
(CBF-A) (NF-Y PROTEIN CHAIN B) (NF-YB) (CAAT-BOX DNA BINDING
PROTEIN SUBUNIT B) >gi|64218|emb|CAA42232.1| (X59712) CAAT-box DNA
binding protein subunit B (NF-YB) [Petromyzon marinus]
Length = 209
Frame 2 hits (HSPs): _________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | 209
0 50 100 150 200
__________________
Annotated Domains:
BLOCKS BL00685A: CBF-A/NF-YB subunit proteins. 55..103
BLOCKS BL00685B: CBF-A/NF-YB subunit proteins. 104..144
DOMO DM01716: CBF-A/NF-YBSUBUNIT 48..161
Entrez Domain: A DOMAIN. 1..53
Entrez Domain: B DOMAIN. 54..143
Entrez Domain: C DOMAIN. 144..209
Entrez dna-binding site: BY SIMILARITY. 60..66
PFAM CBFD_NFYB_HMF: Histone-like transcriptio 58..126
PRINTS CCAATSUBUNTA1: CBFA/NFYB motif I - 5 87..105
PRINTS CCAATSUBUNTA2: CBFA/NFYB motif II - 5 106..124
PRINTS CCAATSUBUNTA3: CBFA/NFYB motif III - 5 125..143
PRODOM PD015726: CBFA(3) O73744(1) 1..58
PRODOM PD002982: CBFA(4) HAP3(2) 60..126
PRODOM PD150746: CBFA(3) Q63091(1) O73744(1) 128..172
PRODOM PD015727: CBFA(3) O73744(1) 176..208
PROSITE CBFA_NFYB: CBF-A/NF-YB subunit signature 90..106
__________________
Plus Strand HSPs:
Score = 110 (38.7 bits), Expect = 0.0012, P = 0.0012
Identities = 25/72 (34%), Positives = 45/72 (62%), Frame = +2
Query: 8 SESNEVCNKEERRTXAPEHVLKALGVLGFGEYIEEVYAAYEQHKLETMQDSLKGAKWSNR 187
SE++E C++E+R+T E +L A+ LGF Y+E + +Q+ L+ ++S+KG K N
Sbjct: 100 SEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPL----KQY-LQKYRESMKGEKGINA 154
Query: 188 AEMTEEEALAEQ 223
+T +A+ E+
Sbjct: 155 TVVTTTDAIPEE 166
>gi|11433755 ref|XP_006606.1| nuclear transcription factor Y, beta [Homo
sapiens]
Length = 132
Frame 2 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | 132
0 50 100
Plus Strand HSPs:
Score = 95 (33.4 bits), Expect = 0.0036, P = 0.0036
Identities = 24/72 (33%), Positives = 43/72 (59%), Frame = +2
Query: 8 SESNEVCNKEERRTXAPEHVLKALGVLGFGEYIEEVYAAYEQHKLETMQDSLKGAKWSNR 187
SE++E C++E+R+T E +L A+ LGF Y+E + Y L+ ++++KG K
Sbjct: 24 SEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPL-KLY----LQKFREAMKGEKGIGG 78
Query: 188 AEMTEEEALAEQ 223
A +T + L+E+
Sbjct: 79 A-VTATDGLSEE 89
>gi|115843|sp|P25211|CBFA_XENLA CCAAT-BINDING TRANSCRIPTION FACTOR SUBUNIT A
(CBF-A) (NF-Y PROTEIN CHAIN B) (NF-YB) (CAAT-BOX DNA BINDING
PROTEIN SUBUNIT B) >gi|103999|pir||S22819 transcription factor
NF-Y, CCAAT-binding, chain B - African clawed frog (fragment)
>gi|64913|emb|CAA42229.1| (X59709) CAAT-box DNA binding protein
subunit B (NF-YB) [Xenopus laevis]
Length = 122
Frame 2 hits (HSPs): _____________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 122
0 50 100
__________________
Annotated Domains:
Entrez Domain: B DOMAIN. 1..57
Entrez Domain: C DOMAIN. 58..122
PROSITE CBFA_NFYB: CBF-A/NF-YB subunit signature 4..20
__________________
Plus Strand HSPs:
Score = 89 (31.3 bits), Expect = 0.0059, P = 0.0059
Identities = 25/72 (34%), Positives = 42/72 (58%), Frame = +2
Query: 8 SESNEVCNKEERRTXAPEHVLKALGVLGFGEYIEEVYAAYEQHKLETMQDSLKGAKWSNR 187
SE++E C++E+R+T E +L A+ LGF Y+E + Y L+ ++++KG K
Sbjct: 14 SEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPL-KLY----LQKFREAMKGEKGIGG 68
Query: 188 AEMTEE---EALAEQ 223
T + E LAE+
Sbjct: 69 TVTTGDGLGEDLAEE 83
>gi|7443521|pir||S22818 transcription factor NF-Y, CCAAT-binding, chain B - sea
lamprey
Length = 209
Frame 2 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | | 209
0 50 100 150 200
Plus Strand HSPs:
Score = 104 (36.6 bits), Expect = 0.0074, P = 0.0074
Identities = 24/72 (33%), Positives = 44/72 (61%), Frame = +2
Query: 8 SESNEVCNKEERRTXAPEHVLKALGVLGFGEYIEEVYAAYEQHKLETMQDSLKGAKWSNR 187
SE++E C++E+ +T E +L A+ LGF Y+E + +Q+ L+ ++S+KG K N
Sbjct: 100 SEASERCHQEKTKTINGEDILFAMSTLGFDSYVEPL----KQY-LQKYRESMKGEKGINA 154
Query: 188 AEMTEEEALAEQ 223
+T +A+ E+
Sbjct: 155 TVVTTTDAIPEE 166
>gi|548510|sp|P36611|PHP3_SCHPO TRANSCRIPTIONAL ACTIVATOR PHP3
>gi|629903|pir||S42744 transcription factor PHP3 - fission yeast
(Schizosaccharomyces pombe) >gi|403030|emb|CAA52966.1| (X75072)
shows homology to HAP gene [Schizosaccharomyces pombe]
>gi|2330772|emb|CAB11161.1| (Z98559) php3 transcriptional activator
[Schizosaccharomyces pombe]
Length = 116
Frame 2 hits (HSPs): ___________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 116
0 50 100
__________________
Annotated Domains:
BLOCKS BL00685A: CBF-A/NF-YB subunit proteins. 7..55
BLOCKS BL00685B: CBF-A/NF-YB subunit proteins. 56..96
DOMO DM01716: CBF-A/NF-YBSUBUNIT 1..113
Entrez Domain: A DOMAIN. 1..6
Entrez Domain: B DOMAIN. 7..95
Entrez Domain: C DOMAIN. 96..116
Entrez dna-binding site: BY SIMILARITY. 12..18
PFAM CBFD_NFYB_HMF: Histone-like transcriptio 10..78
PRINTS CCAATSUBUNTA1: CBFA/NFYB motif I - 5 39..57
PRINTS CCAATSUBUNTA2: CBFA/NFYB motif II - 5 58..76
PRINTS CCAATSUBUNTA3: CBFA/NFYB motif III - 5 77..95
PRODOM PD002982: CBFA(4) HAP3(2) 12..78
PRODOM PD164234: PHP3_SCHPO 80..115
PROSITE CBFA_NFYB: CBF-A/NF-YB subunit signature 42..58
__________________
Plus Strand HSPs:
Score = 86 (30.3 bits), Expect = 0.013, P = 0.013
Identities = 21/62 (33%), Positives = 34/62 (54%), Frame = +2
Query: 11 ESNEVCNKEERRTXAPEHVLKALGVLGFGEYIEEVYAAYEQHKLETMQD-SLKGAKWSNR 187
E++E C +E+R+T E VL AL LGF Y E + + +++ + + S+K K S
Sbjct: 53 EASEQCTQEKRKTITGEDVLLALNTLGFENYAEVLKISLTKYREQQARSASMKETKQSRS 112
Query: 188 AE 193
E
Sbjct: 113 EE 114
>gi|203355|gb|AAA40888.1| (M60617) CCAAT binding transcription factor-B subunit
[Rattus norvegicus]
Length = 148
Frame 2 hits (HSPs): _____________________________
__________________________________________________
Database sequence: | | | | 148
0 50 100
Plus Strand HSPs:
Score = 93 (32.7 bits), Expect = 0.043, P = 0.042
Identities = 29/95 (30%), Positives = 53/95 (55%), Frame = +2
Query: 8 SESNEVCNKEERRTXAPEHVLKALGVLGFGEYIEEVYAAYEQHKLETMQDSLKGAKWSNR 187
SE++E C++E+R+T E +L A+ LGF Y+E + Y L+ ++++KG K
Sbjct: 61 SEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPL-KLY----LQKFREAMKGEKGIGG 115
Query: 188 AEMTEEEALAEQQRMFAEARARMNGGAIQSKEPEA 292
A ++ + L+E+ + EA +++ G A P A
Sbjct: 116 A-VSATDGLSEE--LTEEAFSKL-GTAAGEPSPWA 146
>gi|12737059 ref|XP_012130.1| nuclear transcription factor Y, beta [Homo
sapiens]
Length = 169
Frame 2 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | | 169
0 50 100 150
Plus Strand HSPs:
Score = 95 (33.4 bits), Expect = 0.048, P = 0.047
Identities = 24/72 (33%), Positives = 43/72 (59%), Frame = +2
Query: 8 SESNEVCNKEERRTXAPEHVLKALGVLGFGEYIEEVYAAYEQHKLETMQDSLKGAKWSNR 187
SE++E C++E+R+T E +L A+ LGF Y+E + Y L+ ++++KG K
Sbjct: 61 SEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPL-KLY----LQKFREAMKGEKGIGG 115
Query: 188 AEMTEEEALAEQ 223
A +T + L+E+
Sbjct: 116 A-VTATDGLSEE 126
>gi|105492|pir||S22817 transcription factor NF-Y, CCAAT-binding, chain B -
human >gi|35050|emb|CAA42230.1| (X59710) CAAT-box DNA binding
protein subunit B (NF-YB) [Homo sapiens]
Length = 205
Frame 2 hits (HSPs): _________________
Annotated Domains: _____
__________________________________________________
Database sequence: | | | | | | 205
0 50 100 150 200
__________________
Annotated Domains:
PROSITE CBFA_NFYB: CBF-A/NF-YB subunit signature 87..103
__________________
Plus Strand HSPs:
Score = 95 (33.4 bits), Expect = 0.092, P = 0.088
Identities = 24/72 (33%), Positives = 43/72 (59%), Frame = +2
Query: 8 SESNEVCNKEERRTXAPEHVLKALGVLGFGEYIEEVYAAYEQHKLETMQDSLKGAKWSNR 187
SE++E C++E+R+T E +L A+ LGF Y+E + Y L+ ++++KG K
Sbjct: 97 SEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPL-KLY----LQKFREAMKGEKGIGG 151
Query: 188 AEMTEEEALAEQ 223
A +T + L+E+
Sbjct: 152 A-VTATDGLSEE 162
>gi|5453780 ref|NP_006157.1| nuclear transcription factor Y, beta;
Transcription factor NF-Y, B subunit; CCAAT-binding transcription
factor subunit A [Homo sapiens] >gi|399193|sp|P25208|CBFA_HUMAN
NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA (NF-Y PROTEIN CHAIN B)
(NF-YB) (CCAAT-BINDING TRANSCRIPTION FACTOR SUBUNIT A) (CBF-A)
(CAAT-BOX DNA BINDING PROTEIN SUBUNIT B) >gi|189199|gb|AAA59930.1|
(L06145) CCAAT-box DNA binding protein subunit NF-YB [Homo sapiens]
Length = 207
Frame 2 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | | 207
0 50 100 150 200
Plus Strand HSPs:
Score = 95 (33.4 bits), Expect = 0.094, P = 0.090
Identities = 24/72 (33%), Positives = 43/72 (59%), Frame = +2
Query: 8 SESNEVCNKEERRTXAPEHVLKALGVLGFGEYIEEVYAAYEQHKLETMQDSLKGAKWSNR 187
SE++E C++E+R+T E +L A+ LGF Y+E + Y L+ ++++KG K
Sbjct: 99 SEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPL-KLY----LQKFREAMKGEKGIGG 153
Query: 188 AEMTEEEALAEQ 223
A +T + L+E+
Sbjct: 154 A-VTATDGLSEE 164
>gi|115838|sp|P25207|CBFA_CHICK CCAAT-BINDING TRANSCRIPTION FACTOR SUBUNIT A
(CBF-A) (NF-Y PROTEIN CHAIN B) (NF-YB) (CAAT-BOX DNA BINDING
PROTEIN SUBUNIT B)
Length = 151
Frame 2 hits (HSPs): __________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | || 151
0 50 100 150
__________________
Annotated Domains:
Entrez Domain: A DOMAIN. 1..50
Entrez Domain: B DOMAIN. 51..140
Entrez Domain: C DOMAIN. 141..151
Entrez dna-binding site: BY SIMILARITY. 57..63
PFAM CBFD_NFYB_HMF: Histone-like transcriptio 55..123
PROSITE CBFA_NFYB: CBF-A/NF-YB subunit signature 87..103
__________________
Plus Strand HSPs:
Score = 88 (31.0 bits), Expect = 0.24, P = 0.21
Identities = 20/56 (35%), Positives = 35/56 (62%), Frame = +2
Query: 8 SESNEVCNKEERRTXAPEHVLKALGVLGFGEYIEEVYAAYEQHKLETMQDSLKGAK 175
SE++E C++E+R+T E +L A+ LGF Y+E + Y L+ ++++KG K
Sbjct: 97 SEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPL-KLY----LQKFREAMKGEK 147
>gi|6754850 ref|NP_035044.1| nuclear transcription factor-Y beta [Mus musculus]
>gi|115841|sp|P22569|CBFA_MOUSE CCAAT-BINDING TRANSCRIPTION FACTOR
SUBUNIT A (CBF-A) (NF-Y PROTEIN CHAIN B) (NF-YB) (CAAT-BOX DNA
BINDING PROTEIN SUBUNIT B) >gi|111172|pir||F38245 transcription
factor NF-Y, CCAAT-binding, chain B - mouse >gi|112408|pir||A23692
transcription factor, CCAAT-binding, chain A1 - rat
>gi|53363|emb|CAA39024.1| (X55316) CAAT-box DNA binding protein
subunit B (NF-YB) [Mus musculus] >gi|203353|gb|AAA40887.1|
(M55045) CCAAT binding transcription factor-B subunit [Rattus
norvegicus]
Length = 207
Frame 2 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | | 207
0 50 100 150 200
Plus Strand HSPs:
Score = 91 (32.0 bits), Expect = 0.29, P = 0.25
Identities = 23/72 (31%), Positives = 43/72 (59%), Frame = +2
Query: 8 SESNEVCNKEERRTXAPEHVLKALGVLGFGEYIEEVYAAYEQHKLETMQDSLKGAKWSNR 187
SE++E C++E+R+T E +L A+ LGF Y+E + Y L+ ++++KG K
Sbjct: 99 SEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPL-KLY----LQKFREAMKGEKGIGG 153
Query: 188 AEMTEEEALAEQ 223
A ++ + L+E+
Sbjct: 154 A-VSATDGLSEE 164
>gi|741374|prf||2007263A CCAAT-binding factor [Mus musculus]
Length = 207
Frame 2 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | | 207
0 50 100 150 200
Plus Strand HSPs:
Score = 91 (32.0 bits), Expect = 0.29, P = 0.25
Identities = 23/72 (31%), Positives = 43/72 (59%), Frame = +2
Query: 8 SESNEVCNKEERRTXAPEHVLKALGVLGFGEYIEEVYAAYEQHKLETMQDSLKGAKWSNR 187
SE++E C++E+R+T E +L A+ LGF Y+E + Y L+ ++++KG K
Sbjct: 99 SEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPL-KLY----LQKFREAMKGEKGIGG 153
Query: 188 AEMTEEEALAEQ 223
A ++ + L+E+
Sbjct: 154 A-VSATDGLSEE 164
>gi|2398527|emb|CAA74051.1| (Y13723) Transcription factor [Arabidopsis
thaliana]
Length = 141
Frame 2 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | 141
0 50 100
Plus Strand HSPs:
Score = 85 (29.9 bits), Expect = 0.42, P = 0.34
Identities = 23/62 (37%), Positives = 37/62 (59%), Frame = +2
Query: 8 SESNEVCNKEERRTXAPEHVLKALGVLGFGEYIE--EVYAAYEQHKLE-TMQDSLKGAKW 178
SE+++ C KE+R+T + +L A+ LGF +Y+E ++Y A +LE + S K
Sbjct: 66 SEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLA-RYRELEGDNKGSGKSGDG 124
Query: 179 SNR 187
SNR
Sbjct: 125 SNR 127
>gi|104551|pir||S24469 transcription factor NF-Y, CAAT-binding, chain B -
chicken >gi|63691|emb|CAA42233.1| (X59713) CAAT-box DNA binding
protein subunit B (NF-YB) [Gallus gallus]
Length = 180
Frame 2 hits (HSPs): _______________
Annotated Domains: ______
__________________________________________________
Database sequence: | | | | | 180
0 50 100 150
__________________
Annotated Domains:
PROSITE CBFA_NFYB: CBF-A/NF-YB subunit signature 87..103
__________________
Plus Strand HSPs:
Score = 88 (31.0 bits), Expect = 0.46, P = 0.37
Identities = 20/56 (35%), Positives = 35/56 (62%), Frame = +2
Query: 8 SESNEVCNKEERRTXAPEHVLKALGVLGFGEYIEEVYAAYEQHKLETMQDSLKGAK 175
SE++E C++E+R+T E +L A+ LGF Y+E + Y L+ ++++KG K
Sbjct: 97 SEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPL-KLY----LQKFREAMKGEK 147
>gi|3928076|gb|AAC79602.1| (AC005770) putative CCAAT-box-binding transcription
factor subunit [Arabidopsis thaliana]
Length = 138
Frame 2 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | 138
0 50 100
Plus Strand HSPs:
Score = 84 (29.6 bits), Expect = 0.53, P = 0.41
Identities = 19/60 (31%), Positives = 34/60 (56%), Frame = +2
Query: 8 SESNEVCNKEERRTXAPEHVLKALGVLGFGEYIEEVYAAYEQHKLETMQDSLKGAKWSNR 187
SE+++ C KE+R+T + +L A+ LGF +Y+E + +++ + S K SNR
Sbjct: 66 SEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYREGDNKGSGKSGDGSNR 125
>gi|9758795|dbj|BAB09093.1| (AB025628) contains similarity to CCAAT-box-binding
trancription factor~gene_id:MNJ7.26 [Arabidopsis thaliana]
Length = 205
Frame 2 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | 205
0 50 100 150 200
Plus Strand HSPs:
Score = 88 (31.0 bits), Expect = 0.65, P = 0.48
Identities = 17/33 (51%), Positives = 23/33 (69%), Frame = +2
Query: 11 ESNEVCNKEERRTXAPEHVLKALGVLGFGEYIE 109
E+NE C +E+R+T E VL A+ LGF +YIE
Sbjct: 75 EANERCQREQRKTITAEDVLWAMSKLGFDDYIE 107
>gi|3282674|gb|AAC39488.1| (AF036684) CCAAT-box binding factor HAP3 homolog
[Arabidopsis thaliana]
Length = 208
Frame 2 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | | 208
0 50 100 150 200
Plus Strand HSPs:
Score = 88 (31.0 bits), Expect = 0.67, P = 0.49
Identities = 19/55 (34%), Positives = 34/55 (61%), Frame = +2
Query: 11 ESNEVCNKEERRTXAPEHVLKALGVLGFGEYIEEVYAAYEQHK-LETMQDS-LKG 169
E+NE C +E+R+T E +L A+ LGF Y++ + +++ +ET + S L+G
Sbjct: 75 EANERCQREQRKTITAEDILWAMSKLGFDNYVDPLTVFINRYREIETDRGSALRG 129
>gi|6552738|gb|AAF16537.1|AC013482_11 (AC013482) T26F17.20 [Arabidopsis
thaliana]
Length = 208
Frame 2 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | | 208
0 50 100 150 200
Plus Strand HSPs:
Score = 88 (31.0 bits), Expect = 0.67, P = 0.49
Identities = 19/55 (34%), Positives = 34/55 (61%), Frame = +2
Query: 11 ESNEVCNKEERRTXAPEHVLKALGVLGFGEYIEEVYAAYEQHK-LETMQDS-LKG 169
E+NE C +E+R+T E +L A+ LGF Y++ + +++ +ET + S L+G
Sbjct: 75 EANERCQREQRKTITAEDILWAMSKLGFDNYVDPLTVFINRYREIETDRGSALRG 129
>gi|22380|emb|CAA42234.1| (X59714) CAAT-box DNA binding protein subunit B
(NF-YB) [Zea mays]
Length = 178
Frame 2 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | 178
0 50 100 150
Plus Strand HSPs:
Score = 85 (29.9 bits), Expect = 1.0, P = 0.65
Identities = 22/59 (37%), Positives = 34/59 (57%), Frame = +2
Query: 8 SESNEVCNKEERRTXAPEHVLKALGVLGFGEYIEEVYAAYEQHKLETMQDSLKGAKWSN 184
SE+++ C +E+R+T + +L A+ LGF +YIE + Y Q E DS AK S+
Sbjct: 76 SEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPL-KVYLQKYREMEGDSKLTAKSSD 133
>gi|115840|sp|P25209|CBFA_MAIZE CCAAT-BINDING TRANSCRIPTION FACTOR SUBUNIT A
(CBF-A) (NF-Y PROTEIN CHAIN B) (NF-YB) (CAAT-BOX DNA BINDING
PROTEIN SUBUNIT B) >gi|7443522|pir||S22820 transcription factor
NF-Y, CCAAT-binding, chain B - maize
Length = 179
Frame 2 hits (HSPs): _________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 179
0 50 100 150
__________________
Annotated Domains:
BLOCKS BL00685A: CBF-A/NF-YB subunit proteins. 31..79
BLOCKS BL00685B: CBF-A/NF-YB subunit proteins. 80..120
DOMO DM01716: CBF-A/NF-YBSUBUNIT 24..136
Entrez Domain: A DOMAIN. 1..29
Entrez Domain: B DOMAIN. 30..119
Entrez Domain: C DOMAIN. 120..179
Entrez dna-binding site: BY SIMILARITY. 36..42
PFAM CBFD_NFYB_HMF: Histone-like transcriptio 34..102
PRINTS CCAATSUBUNTA1: CBFA/NFYB motif I - 5 63..81
PRINTS CCAATSUBUNTA2: CBFA/NFYB motif II - 5 82..100
PRINTS CCAATSUBUNTA3: CBFA/NFYB motif III - 5 101..119
PRODOM PD002982: CBFA(4) HAP3(2) 36..102
PRODOM PD153960: CBFA(1) O23633(1) Q9ZQC3(1) 104..143
PRODOM PD074626: CBFA_MAIZE 145..178
PROSITE CBFA_NFYB: CBF-A/NF-YB subunit signature 66..82
__________________
Plus Strand HSPs:
Score = 85 (29.9 bits), Expect = 1.1, P = 0.65
Identities = 22/59 (37%), Positives = 34/59 (57%), Frame = +2
Query: 8 SESNEVCNKEERRTXAPEHVLKALGVLGFGEYIEEVYAAYEQHKLETMQDSLKGAKWSN 184
SE+++ C +E+R+T + +L A+ LGF +YIE + Y Q E DS AK S+
Sbjct: 76 SEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPL-KVYLQKYREMEGDSKLTAKSSD 133
>gi|7503993|pir||T22529 hypothetical protein F53A2.5 - Caenorhabditis elegans
>gi|3877470|emb|CAB04453.1| (Z81546) contains similarity to Pfam
domain: PF00808 (Histone-like transcription factor (CBF/NF-Y) and
archaeal histone), Score=114.3, E-value=7.5e-31, N=1
[Caenorhabditis elegans]
Length = 184
Frame 2 hits (HSPs): _______________________
__________________________________________________
Database sequence: | | | | | 184
0 50 100 150
Plus Strand HSPs:
Score = 85 (29.9 bits), Expect = 1.1, P = 0.68
Identities = 22/80 (27%), Positives = 41/80 (51%), Frame = +2
Query: 11 ESNEVCNKEERRTXAPEHVLKALGVLGFG-EYIEEVYAAYEQHKLETMQDSLKGAKWSNR 187
E+ + ++++R+T EHV KAL LGF +Y+E + + K+E + + +
Sbjct: 62 EAQRIASQDQRKTIYHEHVQKALQNLGFTPDYLEAADSVLDACKVEAEKKLRRKNSRLEK 121
Query: 188 AEMTEEEALAEQQRMFAEAR 247
+ EE+ QQ + +AR
Sbjct: 122 CGIPEEKLYEMQQELIQKAR 141
>gi|3170225|gb|AAC82336.1| (AF041204) nuclear Y/CCAAT-box binding factor B
subunit NF-YB [Xenopus laevis]
Length = 206
Frame 2 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | | | 206
0 50 100 150 200
Plus Strand HSPs:
Score = 86 (30.3 bits), Expect = 1.2, P = 0.68
Identities = 25/72 (34%), Positives = 42/72 (58%), Frame = +2
Query: 8 SESNEVCNKEERRTXAPEHVLKALGVLGFGEYIEEVYAAYEQHKLETMQDSLKGAKWSNR 187
SE++E C++E+R+T E +L A+ LGF Y+E + Y L+ ++++KG K
Sbjct: 98 SEASERCHQEKRKTINGEDILFAMSRLGFDSYVEPL-KLY----LQKFREAMKGEKGIGG 152
Query: 188 AEMTEE---EALAEQ 223
T + E LAE+
Sbjct: 153 TVTTGDGLGEDLAEE 167
>gi|729682|sp|P40914|HAP3_KLULA HAP3 TRANSCRIPTIONAL ACTIVATOR
>gi|1076964|pir||S51565 transcription factor HAP3 - yeast
(Kluyveromyces marxianus var. lactis) >gi|576931|gb|AAC41662.1|
(L25779) HAP3 [Kluyveromyces lactis]
Length = 205
Frame 2 hits (HSPs): __________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | 205
0 50 100 150 200
__________________
Annotated Domains:
BLOCKS BL00685A: CBF-A/NF-YB subunit proteins. 22..70
BLOCKS BL00685B: CBF-A/NF-YB subunit proteins. 71..111
DOMO DM01716: CBF-A/NF-YBSUBUNIT 15..128
Entrez Domain: A DOMAIN. 1..20
Entrez Domain: B DOMAIN. 21..110
Entrez Domain: C DOMAIN. 111..205
Entrez dna-binding site: BY SIMILARITY. 27..33
Entrez Domain: IMPORTANT FOR SUBUNIT INTERACTIO 54..65
Entrez Domain: ASP/GLU-RICH (ACIDIC). 124..149
Entrez Domain: SER/THR-RICH. 156..179
PFAM CBFD_NFYB_HMF: Histone-like transcriptio 25..93
PRINTS CCAATSUBUNTA1: CBFA/NFYB motif I - 5 54..72
PRINTS CCAATSUBUNTA2: CBFA/NFYB motif II - 5 73..91
PRINTS CCAATSUBUNTA3: CBFA/NFYB motif III - 5 92..110
PRODOM PD159581: HAP3_KLULA 1..25
PRODOM PD002982: CBFA(4) HAP3(2) 27..93
PRODOM PD153552: HAP3(2) 95..126
PRODOM PD074631: HAP3_KLULA 128..204
PROSITE CBFA_NFYB: CBF-A/NF-YB subunit signature 57..73
__________________
Plus Strand HSPs:
Score = 81 (28.5 bits), Expect = 4.5, P = 0.99
Identities = 24/72 (33%), Positives = 38/72 (52%), Frame = +2
Query: 8 SESNEVCNKEERRTXAPEHVLKALGVLGFGEYIE--EVYAA-YEQHKLETMQDSLKGAKW 178
SE+ + C +R+T E +L +L LGF Y E ++Y A Y Q + +++ + K
Sbjct: 67 SEACDRCTSGKRKTINGEDILLSLHALGFENYAEVLKIYLAKYRQQ--QAIKNQMMYPKE 124
Query: 179 SNRAEMTEEEALAE 220
TEEE+ AE
Sbjct: 125 DVEGSYTEEESRAE 138
>gi|11358889|pir||T45874 transcription factor NF-Y, CCAAT-binding-like protein
- Arabidopsis thaliana >gi|6729485|emb|CAB67641.1| (AL132966)
transcription factor NF-Y, CCAAT-binding-like protein [Arabidopsis
thaliana]
Length = 228
Frame 2 hits (HSPs): ___________________
__________________________________________________
Database sequence: | | | | | | 228
0 50 100 150 200
Plus Strand HSPs:
Score = 80 (28.2 bits), Expect = 7.4, P = 1.0
Identities = 25/84 (29%), Positives = 46/84 (54%), Frame = +2
Query: 8 SESNEVCNKEERRTXAPEHVLKALGVLGFGEYIE--EVYAA-YEQHKLETMQDSLKG--- 169
SE+++ C +E+R+T + +L A+ LGF +YI+ +VY Y + + +T + S KG
Sbjct: 74 SEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREMEGDT-KGSGKGGES 132
Query: 170 -AKWSNRAEMTEEEALAEQQRMFAE 241
AK + + + QQ F++
Sbjct: 133 SAKRDGQPSQVSQFSQVPQQGSFSQ 157
>gi|4371295|gb|AAD18153.1| (AC006260) putative CCAAT-box-binding trancription
factor [Arabidopsis thaliana]
Length = 178
Frame 2 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | 178
0 50 100 150
Plus Strand HSPs:
Score = 78 (27.5 bits), Expect = 7.5, P = 1.0
Identities = 16/54 (29%), Positives = 32/54 (59%), Frame = +2
Query: 8 SESNEVCNKEERRTXAPEHVLKALGVLGFGEYIEEVYAAYEQHKLETMQDSLKG 169
SE+++ C +E+R+T + +L A+ LGF +Y+E + +++ + S KG
Sbjct: 75 SEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREGDTKGSAKG 128
>gi|6358711|gb|AAF07335.1|AF188116_4 (AF188116) Vpr protein [Simian
immunodeficiency virus]
Length = 114
Frame -1 hits (HSPs): _______________________________
__________________________________________________
Database sequence: | | | | 114
0 50 100
Minus Strand HSPs:
Score = 72 (25.3 bits), Expect = 7.8, P = 1.0
Identities = 19/69 (27%), Positives = 31/69 (44%), Frame = -1
Query: 302 NFGQPLAPWIEWLLHSFLHVPLQTSFAVQPMLLPQSSQLCCSTLHLLKNLAL-FPTCVVH 126
+FG P PW +WL + + + +L Q S+ C S+ + + F T V
Sbjct: 16 DFGPPREPWAQWLADTMEEIKEEARRHFPEAILAQVSEYCVSSTGSEEEACMRFITLVNR 75
Query: 125 MLH-KLPRC 102
L+ LP+C
Sbjct: 76 ALYLHLPQC 84
>gi|2137339|pir||I62129 gene Mid1 protein - mouse (fragment)
>gi|199690|gb|AAA02577.1| (M99625) 3' end of the Mid1 gene,
localized upstream the mouse activealpha globin gene cluster [Mus
musculus]
Length = 75
Frame -3 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | 75
0 20 40 60
Minus Strand HSPs:
Score = 61 (21.5 bits), Expect = 8.3, P = 1.0
Identities = 12/22 (54%), Positives = 13/22 (59%), Frame = -3
Query: 585 VXAARIVIDHIGGWVXAPXRFF 520
V AARI I H G W P RF+
Sbjct: 29 VAAARIGIGHAGEWTQKPLRFY 50
>gi|9965735|gb|AAG10144.1|AF250338_1 (AF250338) transcription factor Hap3b
[Arabidopsis thaliana]
Length = 123
Frame 2 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | 123
0 50 100
Plus Strand HSPs:
Score = 73 (25.7 bits), Expect = 9.2, P = 1.0
Identities = 15/38 (39%), Positives = 26/38 (68%), Frame = +2
Query: 11 ESNEVCNKEERRTXAPEHVLKALGVLGFGEYIE--EVY 118
E+++ C KE+R+T + +L A+ LGF +Y+E +VY
Sbjct: 6 EASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVY 43
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.96
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.349 0.153 0.531
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.338 0.143 0.461
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.357 0.161 0.588
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.347 0.153 0.542
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.362 0.163 0.626
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.346 0.147 0.496
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 195 193 10. 76 3 12 22 0.12 34
31 0.099 38
+2 0 195 192 10. 76 3 12 22 0.12 34
31 0.098 38
+1 0 195 191 10. 76 3 12 22 0.12 34
31 0.098 38
-1 0 195 191 10. 76 3 12 22 0.12 34
31 0.098 38
-2 0 195 193 10. 76 3 12 22 0.12 34
31 0.099 38
-3 0 195 191 10. 76 3 12 22 0.12 34
31 0.098 38
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 38
No. of states in DFA: 593 (58 KB)
Total size of DFA: 220 KB (256 KB)
Time to generate neighborhood: 0.02u 0.00s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 191.52u 1.01s 192.53t Elapsed: 00:00:33
Total cpu time: 191.56u 1.06s 192.62t Elapsed: 00:00:33
Start: Wed Oct 3 09:56:07 2001 End: Wed Oct 3 09:56:40 2001
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000