Reference SNP(refSNP) Cluster Report: rs4152582

Reference SNP(refSNP) Cluster Report: rs4152582

refSNP ID: rs4152582
Organism:	mouse (Mus musculus)
Molecule Type:	Genomic
Created/Updated in build:	111/128
Map to Genome Build:	37.1

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	C/G
Strain:	not submitted
Ancestral Allele:	Not available
Clinical Association:	unknown

HGVS Names

Links

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss39486573 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs4152582 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss6314480	CRAMUS\|mCV24541808_1940687		fwd/T	C/G	tgaggtcccctaaaaagacctaagatctta	gtgaggctgccacaatgacctcctctgcag	02/02/03	04/07/04	111	Genomic			unknown
ss39486573	ABI\|mCV24541808		fwd/	C/G	tgaggtcccctaaaaagacctaagatctta	gtgaggctgccacaatgacctcctctgcag	07/16/05	12/22/05	125	Genomic			unknown

Fasta sequence (Legend)

 GGAGGTCCGT GGGAGGGAGA GGCATGCGAC CTCCCTTCAG TTTAGGGAAA CTTCCTTTCA
 GGCCAAACTG GTCTAGTTCC TCAGCCTTCA ATGGATCCCA GGATCTGGAG AAAGTGGGCA
 AAGTCAGGCT TTGACCTTGG GAGAATGAGA GGGTTGGTCA GCCCCAATGT CAAGCCTGAA
 CTCACCTGAG CAAGGTGGAC ACAGGGCTAG AGTAGAGGCC TCCTACTCAC CCATGGAATT
 CTGAGGATAA CCATGGGCCT GGTCCTAACT TGAGGTCCCC TAAAAAGACC TAAGATCTTA
 S
 GTGAGGCTGC CACAATGACC TCCTCTGCAG AGGCACATGT GCATCACTGC TCCTTTTAGG
 GATCTAAGAA ACATTCTAGG GAGTAGCCAG GGCTTGGGCA GAGAAGCTCA GGACAGCCAG
 TGGGGCGTTA GGGGAATTCA CTCTCACCTG AATGCTCAGG TTTCCCAACT TTCCCAATTC
 CTGGTCTAGA GTGCTAAAGC TTAATATTAG GCAAGTGCCA GCAGGATTCG TGTTTGGAGT
 GATATTTACT GTCTAATGGG AGACTGACAG GGCAGCAACT CTAACCACAT AAAGCAACCA

GeneView

GeneView via analysis of contig annotation: Adcy9 adenylate cyclase 9

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

Celera

NW_001030584->NM_009624

function

C57BL/6J

NT_039624->NM_009624

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	Function


Celera	NW_001030584->NM_009624->NP_033754	819298	reverse	intron

C57BL/6J	NT_039624->NM_009624->NP_033754	1306015	reverse	intron

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs4152582 maps exactly once on NCBI mouse chromosome 16

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
16	NT_039624.7	1306015	4306015	plus	C	ref_strain	C57BL/6J	C57BL/6J	view	300
16	NW_001030584.1	819298	4940687	plus	C	alt_assembly_1	Celera	Celera	view	300

NCBI Resource Links

Submitter-Referenced

dbSNP Blast Analysis
GenBank HTGS Finished:
AC087799.43

Population Diversity

	Sample Ascertainment				Genotype Detail
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	C/C	G/G
ss39486573	CRAMUS_MOUSE		8	IG	3	1

ss6314480	CRAMUS_MOUSE		8	IG	3	1

Summary	Average Het.+/- std err:	Individual Count	Founders Count	Individual Overlap	Genotype Conflict
	0.375+/-0.217	4	4	4	0

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	UNKNOWN

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Revised: May 25, 2006 1:38 PM .