Human Herpesvirus 8 Repeat Records Search


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Record 1 of 1
MiniMap IGR55 IGR59 IGR56 IGR58 IGR57 IGR54 K13,vFLIP, - KSHV076 ORF72,k-Cyclin,v-Cyclin,vCyc, - KSHV077 ORF73,LNA,LNA-1,LANA,LANA1, - KSHV078 ORF74,vGPCR,vGCR, - KSHV080 K14,vOX-2,vAdh, - KSHV079 K13,vFLIP, - KSHV076 ORF72,k-Cyclin,v-Cyclin,vCyc, - KSHV077 ORF73,LNA,LNA-1,LANA,LANA1, - KSHV078 ORF74,vGPCR,vGCR, - KSHV080 K14,vOX-2,vAdh, - KSHV079 Type: tandem, Name: moi - 18 Type: tandem, Name: moi - 11 Type: tandem, Name: moi - 15 Type: tandem, Name: moi - 9 Type: tandem, Name: moi - 17 Type: tandem, Name: moi - 15 Type: tandem, Name: moi - 14 Type: tandem, Name: moi - 10 Type: tandem, Name: moi - 13 Type: tandem, Name: moi - 12 Type: tandem, Name: moi - 16 Type: tandem, Name: moi - 16 K13,vFLIP, - KSHV076 ORF72,k-Cyclin,v-Cyclin,vCyc, - KSHV077 ORF73,LNA,LNA-1,LANA,LANA1, - KSHV078 ORF74,vGPCR,vGCR, - KSHV080 K14,vOX-2,vAdh, - KSHV079

Repeat ID: 15

DNA Molecule Name:
1

Repeat Name:
moi

Repeat Type:
tandem

Copy Number:
28.80

Comment:
This is a large region of imperfect tandem repeats named moi by Patrick Moore extending for almost two kilobases within ORF73, the latency-associated nuclear antigen, LANA1. This 30 basepair tandem repeat has consensus over 29 nt, with 90% matches, ~110 inserts/deletes and score 504.

Consensus:
CTGCTGCTGCTCTCCTGCTGCTGTGGCTC

Repeat Unit Coordinates:
StartStop
153346153378
153379153411
153412153444
153445153477
153478153507
153508153537
153538153567
153568153597
153598153627
153628153657
153658153687
153688153717
153718153747
153748153807
153808153837
153838153867
153868153897
153898153927
153928153957
153958153987
153988154017
153988154017
154018154047
154048154074
154075154101
154102154158
154159154188
154189154213

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