Reference SNP(refSNP) Cluster Report: rs35366482

Reference SNP(refSNP) Cluster Report: rs35366482

refSNP ID: rs35366482
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	126/129
Map to Genome Build:	36.3

Allele
Variation Class:	DIP: deletion/insertion polymorphism
RefSNP Alleles:	-/G
Ancestral Allele:	Not available
Clinical Association:	unknown

HGVS Names
NM_005117.2:c.850_851insC
NT_078088.3:g.373378_373379insG

Links

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss39957220 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs35366482 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss39957220	ABI\|hCV33002934		fwd/	-/G	tggggaaagggttctaggtcttcccccgct	gcttccacacagcaagttattgacaagact	07/16/05	07/16/05	126	Genomic			unknown

Fasta sequence (Legend)

 CACCCGAGCT TTTGGTGTCC AGGGCAGACA CACCGAGGGT TTCCTCCCGT GGACGGTGCT
 GCCCCCCACC AGCCCCTTCC CCACCCTCCC TAACATTCTA GGCGGATAAT AGAATGCACC
 TTTTGATACA AACAAACTCC ATTTTAATAT ACAAAACAAA CCTCACTTAC ATACATAAAT
 ATAATTTGGG GGCATAAATA ATGTAAGAAA ATAAGAGATG TACATATCAA AATAAATTAC
 TCATAAATAT CATGTTGGAA AACCAAGTGC TGGGGAAAGG GTTCTAGGTC TTCCCCCGCT
 N
 GCTTCCACAC AGCAAGTTAT TGACAAGACT TGGGGTCTTC AAATCTTTTC TTTTCCTGAT
 TTTTGAACAA GAAGTGCAGG TTGACATAAG GTGGGGGGCC TGGGAGGCCC CAATCCATGG
 GGAGGCATGT GAGGTGGGCA GAGGGCTGGT GGGCTGGGAG ATGGAAGCAG GTGACACCGG
 GACAGCAAGT TATTCTCAGG ACAGCATCCA TGACAGAACT GGCCTCAGGG GGAATTCTCA
 AGTTGTCCCA GGGCTGGAGT GGGGCTCCAG GCTTCCCCTA CTCCTGAAGC CTGGTGGGCC

GeneView

GeneView via analysis of contig annotation: FGF19 fibroblast growth factor 19

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

reference

NT_078088->NM_005117

function

HuRef

NW_001838027->NM_005117

function

Celera

NW_925106->NM_005117

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	mRNA pos	Function


reference	NT_078088->NM_005117->	373378:373379	reverse	1964	3' UTR

HuRef	NW_001838027->NM_005117->	373382:373383	reverse	1964	3' UTR

Celera	NW_925106->NM_005117->	15158293:15158294	reverse	1964	3' UTR

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs35366482 maps exactly once on NCBI human chromosome 11

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
11	NW_001838027.1	373382^373383	65805364^65805365	plus	-	alt_assembly_8	HuRef	HuRef	view	300..300
11	NW_925106.1	15158293^15158294	66810217^66810218	plus	-	alt_assembly_1	Celera	Celera	view	300..300
11	NT_078088.3	373378^373379	69222360^69222361	plus	-	ref_assembly	reference	reference	view	300..300

NCBI Resource Links

Submitter-Referenced

dbSNP Blast Analysis
GenBank HTGS Finished:
AP001888.4 NC_000011.8

Population Diversity

There is no frequency data.

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	UNKNOWN

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Revised: May 25, 2006 1:38 PM .