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Finding cDNAs
UGID:277078     UniGene Mm.89515     Mus musculus (mouse)   Snx9 Order cDNA clone, Links
Sorting nexin 9, mRNA (cDNA clone MGC:6327 IMAGE:3257422) (Snx9)
SELECTED PROTEIN SIMILARITIES
Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.
Reference ProteinSpeciesId(%)Len(aa)
NP_079940.2 sorting nexin 9 M. musculus 100.0 594
NP_057308.1 sorting nexin 9 H. sapiens 95.8 594
NP_001086616.1 sorting nexin 9 X. laevis 85.9 581
NP_001025295.1 sorting nexin 9-like D. rerio 76.8 580

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: embryonic tissue; mammary gland; skin; spleen; lung; uterus; fertilized ovum; bone marrow; muscle; pancreas; intestine; ovary; mixed; heart; kidney; brain; bone; blood; extraembryonic tissue; eye; bladder; prostate; thymus; uncharacterized tissue; pineal gland; salivary gland; inner ear; liver
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 17
Map position: 17 A1|17 3.3 cM
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (21)

AK218282.1 Mus musculus cDNA, clone:Y2G0144K08, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000002436, based on BLAT search P
AK214085.1 Mus musculus cDNA, clone:Y2G0130J08, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000002436, based on BLAT search P
AK208568.1 Mus musculus cDNA, clone:Y2G0112A17, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000002436, based on BLAT search P
AK208099.1 Mus musculus cDNA, clone:Y2G0110C03, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000002436, based on BLAT search P
AK204095.1 Mus musculus cDNA, clone:Y1G0147E19, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000002436, based on BLAT search P
AK202820.1 Mus musculus cDNA, clone:Y1G0142M19, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000002436, based on BLAT search P
AK202748.1 Mus musculus cDNA, clone:Y1G0142J11, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000002436, based on BLAT search P
AK202482.1 Mus musculus cDNA, clone:Y1G0141K13, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000002436, based on BLAT search P
AK194036.1 Mus musculus cDNA, clone:Y1G0114B20, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000002436, based on BLAT search P
AK191492.1 Mus musculus cDNA, clone:Y1G0106B04, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000002436, based on BLAT search P
AK189192.1 Mus musculus cDNA, clone:Y0G0148D06, strand:plus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000002436, based on BLAT search P
AK155830.1 Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F730227O19 product:sorting nexin 9, full insert sequence P
AK170339.1 Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F630048N19 product:sorting nexin 9, full insert sequence P
AK149849.1 Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:G530023C14 product:sorting nexin 9, full insert sequence P
AK149739.1 Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:G530014H15 product:sorting nexin 9, full insert sequence P
AK157517.1 Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830220J06 product:sorting nexin 9, full insert sequence P
AK139802.1 Mus musculus 2 cells egg cDNA, RIKEN full-length enriched library, clone:B020018D15 product:sorting nexin 9, full insert sequence P
AK012520.1 Mus musculus 11 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2700073N08 product:sorting nexin 9, full insert sequence P
AK004449.1 Mus musculus 18-day embryo whole body cDNA, RIKEN full-length enriched library, clone:1190002G15 product:sorting nexin 9, full insert sequence P
NM_025664.5 Mus musculus sorting nexin 9 (Snx9), mRNA PA
BC014814.1 Mus musculus sorting nexin 9, mRNA (cDNA clone MGC:6327 IMAGE:3257422), complete cds PA

EST sequences (10 of 243) [Show all sequences]

CA566672.1 Clone NIA:K0404C01_IMAGE:30059448 bone marrow 5' read P
CA566685.1 Clone NIA:K0404D05_IMAGE:30059464 bone marrow 5' read P
BY360055.1 Clone 4222403D18 mammary gland 3' read A
BY360788.1 Clone 6820402B04 embryonic tissue 3' read A
BY369797.1 Clone F530013N19 kidney 3' read A
BY370608.1 Clone G430030G05 mammary gland 3' read A
BY373756.1 Clone G630034A17 mixed 3' read A
BY375552.1 Clone G730023A20 lung 3' read A
BY376879.1 Clone G930012O10 mammary gland 3' read A
BY376953.1 Clone G930019A11 mammary gland 3' read A


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
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