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Department of Horticultural Sciences under the
U.S. Department of Agriculature (USDA) Plant
Genome Project
Research Service, National Agricultural Library
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Research Service, Plant Genome Data Information
Center
Databases
Research Service, Plant Genome Project
genetic, molecular, and phenotypic information for
rosaceous crops, including apple, peach, cherry,
plum, almond, strawberry, and rose. Supported
largely by the USDA-ARS Plant Genome Research
Program, RoseDB is a cooperative project involving
scientists working on rosaceous crops worldwide.
Currently, the database includes marker
segregation and linkage maps for five apple
cultivars (Rome Beauty, White Angel, Wijcik
McIntosh, NY75441-58, and NY75441-67).
Approximately 1000 markers are listed. Most are
PCR-based, but morphological, isozyme, and RFLP
loci are also included. Gel images are available
on line for most markers. Intermap comparisons of
marker positions and marker order are provided.
data repository of record for genotype identification.
For apple, a 25-locus isozyme fingerprint for each
of the 203 accessions in the USDA-ARS Malus
germplasm core collection is available.
Microsatellite, or simple sequence repeat (SSR),
markers useful in fingerprinting have been loaded.
Correspondence with the European Apple Mapping
Project and mapping projects in New Zealand and
Japan is planned to a high level of data sharing.
Data from these research programs, as well as
others focused on rosaceous crops, will be added
as available. Although RoseDB has been established
on apple data and will continue to serve the apple
community by adding and updating genetic maps,
cultivar fingerprints, and genetic markers, the
database will probably have its greatest use in
the elucidation of genome evolution in the
Rosaceae. Data already indicate that linkages have
been conserved between pear and apple and between
apple and several Prunus species. The database
will not only contain data about molecular maps,
but also information about genes, pathologies,
pedigrees of cultivars etc. The purpose is to make
this database useful as possible for those
interested in the Rose family.
Agriculture Genome Information System (AGIS)
homepage - http://probe.nalusda.gov:8300/.
The distributor for this information will be changing
in 1999. Please contact Dr. Samuel Cartinhour of
Cornell at scartinh@greengenes.cit.cornell.edu for
information. Internal Filename -
usdaarspgdicdrosedb
compliance with any copyright restrictions,
including those applying to the author abstracts.
Documents from this server are provided "AS-IS"
without any warranty, expressed or implied.
Data Class - Number of Records (Attributes) :
2_point_data - 2, Allele - 189, Author - 288,
Chrom_Band - 2, Colleague - 47, Collection - 3,
DNA - 568, Environment - 2, Gene_Class - 2,
Germplasm - 431, Germplasm_survey - 3, Image -
282, Journal - 44, Locus - 1636, Map - 160,
Map_Data - 13, Marker_Type - 11, Model - 97,
MultiMap - 47, Pathology - 2, Polymorphism - 251,
Primer - 3330, Probe - 2, Reference - 135,
Restriction - 2, Sequence - 808, Species - 78,
Trait - 2, YAC - 2.
Research Service, Plant Genome Data Information
Center
Research Service, National Agricultural Library,
Agricultural Genome Information System
(USDA), Agriculture Genome Information System
(AGIS) server are provided "as-is" without any
warranty, expressed or implied.
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Information Infrastructure Metadata