R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|5882728|gb|AAD55281.1|AC008263_12 (AC008263) ESTs gb|T75898, gb|R65457,
gb|AA597517 and gb|AA597420 come from this gene. [Arabidopsis
thaliana] >gi|12323902|gb|AAG51928.1|AC013258_22 (AC013258) unknown
protein; 53109-54448 [Arabidopsis thaliana]
Length = 249
Frame 2 hits (HSPs): ________________________
Frame 1 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | 249
0 50 100 150 200
Plus Strand HSPs:
Score = 185 (65.1 bits), Expect = 1.9e-13, P = 1.9e-13
Identities = 41/115 (35%), Positives = 62/115 (53%), Frame = +2
Query: 251 FKLKKAKDILSFAGKGMSQNQNDYANTFPATTSANPTRPFPFLMNIIPTXANNSVQDHPQ 430
F +KAK+++ A KG +++ + SA + N + + A + Q+ Q
Sbjct: 134 FSAEKAKEVIDLANKGSAKSFTCFTAEVNNNHSAYSQKEIASSPNPVCSPAKTAAQEPIQ 193
Query: 431 APSKPVICDLPLARKASLHRFLEKRKDRIAARAPYQTSNHMAALNKPAESMTWLT 595
+ C+LP+AR+ASLHRFLEKRKDRI ++APYQ A +KP WL+
Sbjct: 194 PNPASLACELPIARRASLHRFLEKRKDRITSKAPYQIDGSAEASSKPTNP-AWLS 247
Score = 87 (30.6 bits), Expect = 1.6, P = 0.79
Identities = 16/40 (40%), Positives = 28/40 (70%), Frame = +1
Query: 181 VTKDARGSQLTIFYGGQVLVFDDIQAKKSQGHLVFCRQGN 300
V +++ + LTIFYGG+V+VFDD A+K++ + +G+
Sbjct: 111 VKPESQSAPLTIFYGGRVMVFDDFSAEKAKEVIDLANKGS 150
>gi|8954056|gb|AAF82229.1|AC069143_5 (AC069143) Contains similarity to an
unknown protein T10D10.8 gi|6730756 from Arabidopsis thaliana BAC
T10D10 gb|AC016529. ESTs gb|T14209, gb|BE038503, gb|AA650871,
gb|AA597384, gb|H76606, gb|AI996806, gb|AI100291 come from this
gene. >gi|12083250|gb|AAG48784.1|AF332421_1 (AF332421) unknown
protein [Arabidopsis thaliana]
Length = 253
Frame 2 hits (HSPs): _______________________
__________________________________________________
Database sequence: | | | | | || 253
0 50 100 150 200 250
Plus Strand HSPs:
Score = 175 (61.6 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 47/117 (40%), Positives = 68/117 (58%), Frame = +2
Query: 251 FKLKKAKDILSFAGKG----MSQNQNDYANTFPATTSANPTRPFPFLMNIIPTXANNSVQ 418
F +KAK++++ A KG +++NQ D + T AN P P T +Q
Sbjct: 141 FSAEKAKEVINLASKGTANSLAKNQTDIRSNI--ATIANQV-PHPR-----KTTTQEPIQ 192
Query: 419 DHPQAPSKPVICDLPLARKASLHRFLEKRKDRIAARAPYQTSNHMAALNKPAES--MTWL 592
P P + +LP+AR+ASLHRFLEKRKDR+ ++APYQ + A + P + M+WL
Sbjct: 193 SSP-TP----LTELPIARRASLHRFLEKRKDRVTSKAPYQLCDPAKASSNPQTTGNMSWL 247
Query: 593 TLA 601
LA
Sbjct: 248 GLA 250
>gi|12247470|gb|AAG49896.1| (AF303458) PnFL-2 [Ipomoea nil]
Length = 206
Frame 2 hits (HSPs): _____________________
Frame 1 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | | 206
0 50 100 150 200
Plus Strand HSPs:
Score = 128 (45.1 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 36/80 (45%), Positives = 46/80 (57%), Frame = +2
Query: 383 NIIPTXANNSVQDHPQA----PS---KPVICDLPLARKASLHRFLEKRKDRIAARA-PYQ 538
NI+P NSV P PS + DLP+AR++SL RFLEKRKDRI ++A PYQ
Sbjct: 120 NILPCADVNSVVPRPAVSKVVPSFGNQRAYSDLPIARRSSLARFLEKRKDRITSKAAPYQ 179
Query: 539 TSNHMAALNKPAESMTWLTLAPKSP 613
N+ E+ WL L + P
Sbjct: 180 KGK-----NEEEENKAWLGLTAQFP 199
Score = 60 (21.1 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 11/37 (29%), Positives = 23/37 (62%), Frame = +1
Query: 160 NMGNSXVVTKDARGSQLTIFYGGQVLVFDDIQAKKSQ 270
N +S + D + +TIFY GQ+++F++ +K++
Sbjct: 71 NKIDSSLGKADPERAPMTIFYNGQMIMFNEFPVEKAK 107
>gi|12324750|gb|AAG52332.1|AC011663_11 (AC011663) hypothetical protein;
49277-47786 [Arabidopsis thaliana]
Length = 217
Frame 2 hits (HSPs): __________________
Frame 1 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | | 217
0 50 100 150 200
Plus Strand HSPs:
Score = 101 (35.6 bits), Expect = 7.0e-08, Sum P(2) = 7.0e-08
Identities = 29/74 (39%), Positives = 40/74 (54%), Frame = +2
Query: 326 NTFPATTSANPTRPFPFLM-NIIPTXANNS---VQDHPQAPSKPVICDLPLARKASLHRF 493
NT AT+S++ T F P A N+ ++ AP + P ARKASL RF
Sbjct: 122 NT-AATSSSSATHTDNFSRCRDTPVAATNAMSMIESFNAAPRNMIPSVFPQARKASLARF 180
Query: 494 LEKRKDRIAARAPYQ 538
LEKRK+R+ + PY+
Sbjct: 181 LEKRKERLMSAMPYK 195
Score = 85 (29.9 bits), Expect = 7.0e-08, Sum P(2) = 7.0e-08
Identities = 26/62 (41%), Positives = 35/62 (56%), Frame = +1
Query: 133 PYLFVEEIPNMGNSXVVTKDAR-GS--QLTIFYGGQVLVFDDIQAKKSQGHLVFCRQGNV 303
P L +P + +V + A GS QLTIFYGG + VF+DI K+Q ++ C GN
Sbjct: 41 PLLLGGSVPLPTHPSLVPRVASSGSSPQLTIFYGGTISVFNDISPDKAQA-IMLCA-GNG 98
Query: 304 SKPE 315
K E
Sbjct: 99 LKGE 102
>gi|9294490|dbj|BAB02709.1| (AB019230) gb|AAF09073.1~gene_id:MEB5.8~similar to
unknown protein [Arabidopsis thaliana]
Length = 352
Frame 2 hits (HSPs): ____ _____
Frame 1 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | 352
0 150 300
Plus Strand HSPs:
Score = 98 (34.5 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 20/31 (64%), Positives = 25/31 (80%), Frame = +2
Query: 443 PVICDLPLARKASLHRFLEKRKDRIAARAPY 535
P + LPLARKASL RFLEKRK+R+ + +PY
Sbjct: 297 PTVA-LPLARKASLARFLEKRKERVTSVSPY 326
Score = 82 (28.9 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 27/82 (32%), Positives = 42/82 (51%), Frame = +1
Query: 79 IHGNMRTSKSLSQQVSYPPYLFVEEIPNMGNSXVVTKDARGS--------QLTIFYGGQV 234
++ N + + + PP + +P G S V T D R S QLTIFY G V
Sbjct: 132 MNNNNNSQPLVGVPIMAPP---ISILPPPG-SIVGTTDIRSSSKPIGSPAQLTIFYAGSV 187
Query: 235 LVFDDIQAKKSQGHLVFCRQGNVSKPE 315
V+DDI +K++ ++ G+ S P+
Sbjct: 188 CVYDDISPEKAKAIMLLAGNGS-SMPQ 213
Score = 39 (13.7 bits), Expect = 0.054, Sum P(2) = 0.052
Identities = 9/18 (50%), Positives = 11/18 (61%), Frame = +2
Query: 260 KKAKDILSFAGKGMSQNQ 313
+KAK I+ AG G S Q
Sbjct: 196 EKAKAIMLLAGNGSSMPQ 213
>gi|8778483|gb|AAF79491.1|AC022492_35 (AC022492) F1L3.3 [Arabidopsis thaliana]
>gi|9665119|gb|AAF97303.1|AC007843_6 (AC007843) Hypothetical
protein [Arabidopsis thaliana]
Length = 274
Frame 2 hits (HSPs): ___________________
__________________________________________________
Database sequence: | | | | | | | 274
0 50 100 150 200 250
Plus Strand HSPs:
Score = 120 (42.2 bits), Expect = 0.00020, P = 0.00020
Identities = 33/100 (33%), Positives = 51/100 (51%), Frame = +2
Query: 251 FKLKKAKDILSFAGKGMSQNQNDYANTFPATTSANPTRPFPFLMNII-PTXANNSVQDHP 427
F + KAK+I+ A + + + P N + L ++ PT N+ ++
Sbjct: 113 FPVDKAKEIMEVAKQAKPVTEINIQT--PINDENNNNKSSMVLPDLNEPTDNNHLTKEQQ 170
Query: 428 QAPSKPVICDLPLARKASLHRFLEKRKDRIAARAPYQTSNH 550
Q + I + +AR+ASLHRF KRKDR ARAPYQ + +
Sbjct: 171 QQQEQNQIVER-IARRASLHRFFAKRKDRAVARAPYQVNQN 210
>gi|8778689|gb|AAF79697.1|AC020889_5 (AC020889) T1N15.11 [Arabidopsis thaliana]
Length = 256
Frame 2 hits (HSPs): ________
Frame 1 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | | 256
0 50 100 150 200 250
Plus Strand HSPs:
Score = 84 (29.6 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 17/36 (47%), Positives = 23/36 (63%), Frame = +1
Query: 205 QLTIFYGGQVLVFDDIQAKKSQGHLVFCRQGNVSKP 312
QLTIFY G VLV+ DI +K+Q ++ G +KP
Sbjct: 126 QLTIFYAGSVLVYQDIAPEKAQAIMLLAGNGPHAKP 161
Score = 74 (26.0 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 19/42 (45%), Positives = 23/42 (54%), Frame = +2
Query: 389 IPTXANNSVQDHPQAPSKPVICDLPLARKASLHRFLEKRKDR 514
+ + NN AP+ LP RKASL RFLEKRK+R
Sbjct: 218 LASTRNNQTAAFSMAPT----VGLPQTRKASLARFLEKRKER 255
>gi|12325268|gb|AAG52575.1|AC016529_6 (AC016529) unknown protein; 37093-38893
[Arabidopsis thaliana]
Length = 269
Frame 2 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | | | | 269
0 50 100 150 200 250
Plus Strand HSPs:
Score = 116 (40.8 bits), Expect = 0.00058, P = 0.00058
Identities = 39/107 (36%), Positives = 51/107 (47%), Frame = +2
Query: 251 FKLKKAKDILSFAGKGMSQNQNDYANTFPATTSANPTRPFPFLMNIIPTXANNSVQDHPQ 430
F KAK+I+ A K + D N+ P L PT + N+ +D
Sbjct: 121 FPEDKAKEIMEVA-KEANHVAVDSKNSQSHMNLDKSNVVIPDLNE--PTSSGNN-EDQET 176
Query: 431 APSKPVICDLPLARKASLHRFLEKRKDRIAARAPYQTSNHMAALN-KP 571
V+ +AR+ASLHRF KRKDR ARAPYQ + H + L KP
Sbjct: 177 GQQHQVV--ERIARRASLHRFFAKRKDRAVARAPYQVNQHGSHLPPKP 222
>gi|11283485|pir||T47386 hypothetical protein T18D12.10 - Arabidopsis thaliana
>gi|7288022|emb|CAB81784.1| (AL138644) putative protein
[Arabidopsis thaliana]
Length = 238
Frame 2 hits (HSPs): _______ __________
Frame 1 hits (HSPs): _______ _____
__________________________________________________
Database sequence: | | | | | | 238
0 50 100 150 200
Plus Strand HSPs:
Score = 85 (29.9 bits), Expect = 0.0068, Sum P(2) = 0.0068
Identities = 17/29 (58%), Positives = 22/29 (75%), Frame = +2
Query: 428 QAPSKPVICDLPLARKASLHRFLEKRKDR 514
+A S + DLP+AR+ SL RFLEKR+DR
Sbjct: 90 RALSFSTVADLPIARRRSLQRFLEKRRDR 118
Score = 84 (29.6 bits), Expect = 0.0018, Sum P(2) = 0.0018
Identities = 17/44 (38%), Positives = 25/44 (56%), Frame = +2
Query: 455 DLPLARKASLHRFLEKRKDRIAARAPYQTSNHMAALNKPAESMT 586
D+P+AR+ SL RF EKR+ R PY + A N+ + +T
Sbjct: 195 DVPIARRRSLQRFFEKRRHRFVHTKPYSATTSEADKNETSPIVT 238
Score = 65 (22.9 bits), Expect = 0.0018, Sum P(2) = 0.0018
Identities = 14/23 (60%), Positives = 16/23 (69%), Frame = +1
Query: 202 SQLTIFYGGQVLVFDDIQAKKSQ 270
SQLTI +GG VFD I A+K Q
Sbjct: 130 SQLTIIFGGSFSVFDGIPAEKVQ 152
Score = 58 (20.4 bits), Expect = 0.0068, Sum P(2) = 0.0068
Identities = 12/29 (41%), Positives = 18/29 (62%), Frame = +1
Query: 184 TKDARGSQLTIFYGGQVLVFDDIQAKKSQ 270
T+ +QLTI +GG VF+ + A+K Q
Sbjct: 38 TEPDASTQLTIIFGGSCRVFNGVPAQKVQ 66
>gi|8099338|gb|AAF72099.1|AF146690_1 (AF146690) Pto-responsive gene 1 protein
[Lycopersicon esculentum]
Length = 228
Frame 2 hits (HSPs): _______
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | 228
0 50 100 150 200
Plus Strand HSPs:
Score = 74 (26.0 bits), Expect = 0.32, Sum P(2) = 0.28
Identities = 15/26 (57%), Positives = 19/26 (73%), Frame = +2
Query: 458 LPLARKASLHRFLEKRKDRIAARAPY 535
L +AR+A+L RFLEKRK R+ PY
Sbjct: 174 LAMARRATLARFLEKRKHRLIKARPY 199
Score = 54 (19.0 bits), Expect = 0.32, Sum P(2) = 0.28
Identities = 11/23 (47%), Positives = 16/23 (69%), Frame = +1
Query: 202 SQLTIFYGGQVLVFDDIQAKKSQ 270
S LTIFY G+V +F I +K++
Sbjct: 106 STLTIFYMGEVHIFPGISPEKAE 128
>gi|11283473|pir||T48569 hypothetical protein T31B5.40 - Arabidopsis thaliana
>gi|7529277|emb|CAB86629.1| (AL163491) putative protein
[Arabidopsis thaliana]
Length = 230
Frame 2 hits (HSPs): ______
Frame 1 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | | 230
0 50 100 150 200
Plus Strand HSPs:
Score = 81 (28.5 bits), Expect = 0.38, Sum P(2) = 0.32
Identities = 15/21 (71%), Positives = 19/21 (90%), Frame = +2
Query: 455 DLPLARKASLHRFLEKRKDRI 517
DLP+AR+ SL RFLEKRK+R+
Sbjct: 166 DLPIARRKSLQRFLEKRKERL 186
Score = 45 (15.8 bits), Expect = 0.38, Sum P(2) = 0.32
Identities = 21/58 (36%), Positives = 26/58 (44%), Frame = +1
Query: 85 GNMRTSKSLSQQVSYPPYLFVEEIPNMGNSXVVTKDARGSQ--------LTIFYGGQVLV 240
GN S + S+ V P E+ P + S V AR S +TIFY G V V
Sbjct: 59 GNNSDSSAKSRSVPSTPR---EDQPQIPISPVHASLARSSTELVSGTVPMTIFYNGSVSV 115
Query: 241 F 243
F
Sbjct: 116 F 116
>gi|3128215|gb|AAC26695.1| (AC004077) hypothetical protein [Arabidopsis
thaliana]
Length = 148
Frame 2 hits (HSPs): ______________
Frame 1 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | 148
0 50 100
Plus Strand HSPs:
Score = 71 (25.0 bits), Expect = 0.63, Sum P(2) = 0.47
Identities = 21/48 (43%), Positives = 24/48 (50%), Frame = +2
Query: 392 PTXANNSVQDHPQAPSKPVICDLPLARKASLHRFLEKRKDRIAARAPY 535
PT NNS + H Q S K SLH FL+KR RI A +PY
Sbjct: 107 PTIPNNSTRFHYQKASM----------KRSLHSFLQKRSLRIQATSPY 144
Score = 47 (16.5 bits), Expect = 0.63, Sum P(2) = 0.47
Identities = 11/29 (37%), Positives = 18/29 (62%), Frame = +1
Query: 169 NSXVVTKDARGSQ-LTIFYGGQVLVFDDI 252
+S +++ + SQ LTIFY G + V D+
Sbjct: 47 SSSEISQPKQESQILTIFYNGHMCVSSDL 75
>gi|90581|pir||PS0139 H-2 class I histocompatibility antigen T18 - mouse
(fragment)
Length = 45
Frame -3 hits (HSPs): _____________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 45
0 20 40
__________________
Annotated Domains:
Entrez domain: connecting peptide 1..20
Entrez domain: transmembrane 21..41
Entrez domain: intracellular 42..45
__________________
Minus Strand HSPs:
Score = 63 (22.2 bits), Expect = 5.7, P = 1.0
Identities = 11/19 (57%), Positives = 15/19 (78%), Frame = -3
Query: 209 SCDPLASLVTTLEFPMFGI 153
SC P A+L++ L FP+FGI
Sbjct: 16 SCSPQATLLSVLAFPLFGI 34
>gi|7485015|pir||A71410 hypothetical protein - Arabidopsis thaliana
>gi|2244828|emb|CAB10251.1| (Z97336) hypothetical protein
[Arabidopsis thaliana] >gi|7268178|emb|CAB78514.1| (AL161539)
hypothetical protein [Arabidopsis thaliana]
Length = 365
Frame 2 hits (HSPs): ___
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | 365
0 150 300
Plus Strand HSPs:
Score = 61 (21.5 bits), Expect = 7.8, Sum P(2) = 1.0
Identities = 12/15 (80%), Positives = 13/15 (86%), Frame = +2
Query: 470 RKASLHRFLEKRKDR 514
RK SL R+LEKRKDR
Sbjct: 274 RKVSLQRYLEKRKDR 288
Score = 61 (21.5 bits), Expect = 7.8, Sum P(2) = 1.0
Identities = 13/37 (35%), Positives = 22/37 (59%), Frame = +1
Query: 205 QLTIFYGGQVLVFDDIQAKKSQGHLVFCRQGNVSKPE 315
Q+TIFY G+V V+D + +K++ + F + PE
Sbjct: 195 QMTIFYSGKVNVYDGVPPEKARSIMHFAANP-IDLPE 230
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.97
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.339 0.147 0.521
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.335 0.141 0.452
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.349 0.152 0.510
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.340 0.147 0.541
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.349 0.156 0.513
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.364 0.163 0.682
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 210 206 10. 77 3 12 22 0.097 35
31 0.11 38
+2 0 211 204 10. 77 3 12 22 0.096 35
31 0.11 38
+1 0 211 207 10. 77 3 12 22 0.098 35
31 0.11 38
-1 0 211 204 10. 77 3 12 22 0.096 35
31 0.11 38
-2 0 211 207 10. 77 3 12 22 0.098 35
31 0.11 38
-3 0 210 207 10. 77 3 12 22 0.098 35
31 0.11 38
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 14
No. of states in DFA: 597 (59 KB)
Total size of DFA: 242 KB (256 KB)
Time to generate neighborhood: 0.01u 0.01s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 204.07u 1.13s 205.20t Elapsed: 00:00:35
Total cpu time: 204.10u 1.16s 205.26t Elapsed: 00:00:35
Start: Thu Jan 17 14:49:25 2002 End: Thu Jan 17 14:50:00 2002
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000