Kingdom | Category | Genus/Species | Count |
---|---|---|---|
  |   | 21 | |
Archaea |   |   | 21 |
  |   | 21 | |
  | Crenarchaeota |   | 4 |
  |   | Metallosphaera sedula (mse) | 1 |
  |   | Nitrosopumilus maritimus (nmr) | 1 |
  |   | Pyrobaculum arsenaticum (pas) | 1 |
  |   | Thermofilum pendens (tpe) | 1 |
  | Euryarchaeota |   | 17 |
  |   | Archaeoglobus fulgidus (afu) | 1 |
  |   | Haloarcula marismortui (hma) | 1 |
  |   | Methanosarcina acetivorans (mac) | 1 |
  |   | Candidatus Methanoregula boonei (mbn) | 3 |
  |   | Methanoculleus marisnigri (mem) | 1 |
  |   | Methanospirillum hungatei (mhu) | 2 |
  |   | Methanococcus jannaschii (mja) | 1 |
  |   | Methanosarcina mazei (mma) | 1 |
  |   | Methanobrevibacter smithii ATCC 35061 (msi) | 1 |
  |   | Methanosaeta thermophila (mtp) | 1 |
  |   | Natronomonas pharaonis (nph) | 1 |
  |   | Pyrococcus horikoshii (pho) | 1 |
  |   | Uncultured methanogenic archaeon RC-I (rci) | 1 |
  |   | Thermoplasma acidophilum (tac) | 1 |
Bacteria |   |   | 4554 |
  | Acidobacteria |   | 13 |
  |   | Acidobacteria bacterium (aba) | 2 |
  |   | Solibacter usitatus (sus) | 11 |
  | Actinobacteria |   | 34 |
  |   | Arthrobacter sp. FB24 (art) | 2 |
  |   | Frankia sp. CcI3 (fra) | 2 |
  |   | Frankia sp. EAN1pec (fre) | 6 |
  |   | Kineococcus radiotolerans (kra) | 3 |
  |   | Mycobacterium avium 104 (mav) | 2 |
  |   | Mycobacterium gilvum (mgi) | 2 |
  |   | Mycobacterium sp. KMS (mkm) | 1 |
  |   | Mycobacterium avium paratuberculosis (mpa) | 1 |
  |   | Mycobacterium smegmatis (msm) | 3 |
  |   | Mycobacterium vanbaalenii (mva) | 2 |
  |   | Rhodococcus sp. RHA1 (rha) | 2 |
  |   | Rubrobacter xylanophilus (rxy) | 1 |
  |   | Streptomyces coelicolor (sco) | 1 |
  |   | Saccharopolyspora erythraea (sen) | 2 |
  |   | Streptomyces avermitilis (sma) | 2 |
  |   | Salinispora tropica (stp) | 1 |
  |   | Thermobifida fusca (tfu) | 1 |
  | Bacteroides |   | 7 |
  |   | Cytophaga hutchinsonii (chu) | 1 |
  |   | Flavobacterium johnsoniae (fjo) | 2 |
  |   | Flavobacterium psychrophilum (fps) | 1 |
  |   | Parabacteroides distasonis (pdi) | 1 |
  |   | Porphyromonas gingivalis (pgi) | 1 |
  |   | Salinibacter ruber (sru) | 1 |
  | Cyanobacteria |   | 29 |
  |   | Acaryochloris marina (amr) | 4 |
  |   | Anabaena sp. PCC7120 (ana) | 1 |
  |   | Anabaena variabilis (ava) | 5 |
  |   | Cyanobacteria Yellowstone A-Prime (cya) | 2 |
  |   | Cyanobacteria Yellowstone B-Prime (cyb) | 1 |
  |   | Gloeobacter violaceus (gvi) | 13 |
  |   | Synechococcus elongatus PCC7942 (syf) | 1 |
  |   | Synechococcus sp. WH7803 (syx) | 1 |
  |   | Thermosynechococcus elongatus (tel) | 1 |
  | Deinococcus-Thermus |   | 5 |
  |   | Thermus thermophilus HB27 (tth) | 3 |
  |   | Thermus thermophilus HB8 (ttj) | 2 |
  | Firmicutes |   | 39 |
  |   | Alkaliphilus metalliredigens (amt) | 1 |
  |   | Alkaliphilus oremlandii (aoe) | 1 |
  |   | Bacillus anthracis Sterne (bat) | 1 |
  |   | Bacillus amyloliquefaciens (bay) | 1 |
  |   | Bacillus cereus ATCC 10987 (bca) | 1 |
  |   | Bacillus licheniformis DSM13 (bld) | 1 |
  |   | Clostridium acetobutylicum (cac) | 1 |
  |   | Clostridium beijerinckii (cbe) | 2 |
  |   | Carboxydothermus hydrogenoformans (chy) | 2 |
  |   | Clostridium kluyveri (ckl) | 1 |
  |   | Clostridium phytofermentans (cpy) | 1 |
  |   | Caldicellulosiruptor saccharolyticus (csc) | 3 |
  |   | Desulfotomaculum reducens (drm) | 2 |
  |   | Desulfitobacterium hafniense (dsy) | 2 |
  |   | Geobacillus kaustophilus (gka) | 1 |
  |   | Geobacillus thermodenitrificans (gtn) | 1 |
  |   | Moorella thermoacetica (mta) | 6 |
  |   | Pelotomaculum thermopropionicum (pth) | 4 |
  |   | Staphylococcus aureus MSSA476 (sas) | 1 |
  |   | Streptococcus pneumoniae TIGR4 (spn) | 1 |
  |   | Symbiobacterium thermophilum (sth) | 3 |
  |   | Syntrophomonas wolfei (swo) | 2 |
  | Green nonsulfur bacteria |   | 11 |
  |   | Chloroflexus aurantiacus (cau) | 2 |
  |   | Dehalococcoides ethenogenes (det) | 1 |
  |   | Herpetosiphon aurantiacus (hau) | 2 |
  |   | Roseiflexus castenholzii DSM13941 (rca) | 2 |
  |   | Roseiflexus sp. RS-1 (rrs) | 4 |
  | Green sulfur bacteria |   | 4 |
  |   | Chlorobium phaeobacteroides (cph) | 4 |
  | Hyperthermophilic bacteria |   | 1 |
  |   | Fervidobacterium nodosum (fno) | 1 |
  | Planctomyces |   | 1 |
  |   | Rhodopirellula baltica (rba) | 1 |
  | Proteobacteria |   | 4409 |
  |   | Acidovorax avenae (aav) | 7 |
  |   | Acidiphilium cryptum JF-5 (acr) | 12 |
  |   | Anaeromyxobacter dehalogenans (ade) | 1 |
  |   | Alkalilimnicola ehrlichei (aeh) | 4 |
  |   | Aeromonas hydrophila (aha) | 1 |
  |   | Acidovorax sp. JS42 (ajs) | 1 |
  |   | Aeromonas salmonicida (asa) | 2 |
  |   | Agrobacterium tumefaciens C58 (Cereon) (atc) | 16 |
  |   | Azorhizobium caulinodans (azc) | 67 |
  |   | Azoarcus sp. BH72 (azo) | 7 |
  |   | Burkholderia cepacia (bam) | 6 |
  |   | Bdellovibrio bacteriovorus (bba) | 1 |
  |   | Bordetella bronchiseptica (bbr) | 13 |
  |   | Bradyrhizobium sp. BTAi1 (bbt) | 611 |
  |   | Burkholderia cenocepacia HI2424 (bch) | 5 |
  |   | Brucella canis (bcs) | 6 |
  |   | Bartonella henselae (bhe) | 2 |
  |   | Bradyrhizobium japonicum (bja) | 1100 |
  |   | Burkholderia mallei NCTC 10247 (bmn) | 1 |
  |   | Brucella suis ATCC 23445 (bmt) | 2 |
  |   | Burkholderia multivorans (bmu) | 2 |
  |   | Brucella ovis (bov) | 4 |
  |   | Bordetella parapertussis (bpa) | 3 |
  |   | Burkholderia pseudomallei 668 (bpd) | 4 |
  |   | Bordetella pertussis (bpe) | 1 |
  |   | Burkholderia pseudomallei 1106a (bpl) | 1 |
  |   | Bordetella petrii (bpt) | 12 |
  |   | Bradyrhizobium sp. ORS278 (bra) | 464 |
  |   | Burkholderia thailandensis (bte) | 4 |
  |   | Bartonella tribocorum (btr) | 2 |
  |   | Burkholderia sp. 383 (bur) | 9 |
  |   | Burkholderia vietnamiensis (bvi) | 3 |
  |   | Burkholderia xenovorans (bxe) | 23 |
  |   | Coxiella burnetii Dugway 7E9-12 (cbd) | 1 |
  |   | Coxiella burnetii RSA 331 (cbs) | 1 |
  |   | Caulobacter crescentus (ccr) | 11 |
  |   | Colwellia psychrerythraea (cps) | 1 |
  |   | Chromohalobacter salexigens (csa) | 2 |
  |   | Chromobacterium violaceum (cvi) | 2 |
  |   | Delftia acidovorans (dac) | 8 |
  |   | Dechloromonas aromatica (dar) | 6 |
  |   | Dichelobacter nodosus (dno) | 1 |
  |   | Candidatus Desulfococcus oleovorans (dol) | 2 |
  |   | Desulfotalea psychrophila (dps) | 1 |
  |   | Dinoroseobacter shibae (dsh) | 14 |
  |   | Azoarcus sp. EbN1 (eba) | 16 |
  |   | Erwinia carotovora (eca) | 3 |
  |   | Escherichia coli CFT073 (UPEC) (ecc) | 1 |
  |   | Escherichia coli K-12 W3110 (ecj) | 1 |
  |   | Escherichia coli O157 Sakai (EHEC) (ecs) | 2 |
  |   | Escherichia coli APEC O1 (ecv) | 2 |
  |   | Escherichia coli HS (ecx) | 3 |
  |   | Enterobacter sakazakii (esa) | 3 |
  |   | Francisella tularensis subsp. novicida U112 (ftn) | 1 |
  |   | Granulobacter bethesdensis (gbe) | 8 |
  |   | Gluconacetobacter diazotrophicus (gdi) | 18 |
  |   | Geobacter metallireducens (gme) | 4 |
  |   | Gluconobacter oxydans (gox) | 1 |
  |   | Geobacter sulfurreducens (gsu) | 2 |
  |   | Geobacter uraniumreducens (gur) | 2 |
  |   | Herminiimonas arsenicoxydans (har) | 4 |
  |   | Hahella chejuensis (hch) | 5 |
  |   | Halorhodospira halophila (hha) | 16 |
  |   | Hyphomonas neptunium (hne) | 3 |
  |   | Helicobacter pylori 26695 (hpy) | 1 |
  |   | Idiomarina loihiensis (ilo) | 1 |
  |   | Jannaschia sp. CCS1 (jan) | 6 |
  |   | Legionella pneumophila Lens (lpf) | 1 |
  |   | Magnetospirillum magneticum (mag) | 35 |
  |   | Marinobacter aquaeolei (maq) | 2 |
  |   | Methylococcus capsulatus (mca) | 6 |
  |   | Mesorhizobium sp. BNC1 (mes) | 28 |
  |   | Methylobacterium extorquens (mex) | 66 |
  |   | Magnetococcus sp. MC-1 (mgm) | 4 |
  |   | Mesorhizobium loti (mlo) | 41 |
  |   | Minibacterium massiliensis (mms) | 5 |
  |   | Marinomonas sp. MWYL1 (mmw) | 2 |
  |   | Methylibium petroleiphilum (mpt) | 5 |
  |   | Myxococcus xanthus (mxa) | 7 |
  |   | Novosphingobium aromaticivorans (nar) | 5 |
  |   | Nitrosomonas eutropha (net) | 1 |
  |   | Nitrosomonas europaea (neu) | 2 |
  |   | Nitrobacter hamburgensis (nha) | 786 |
  |   | Neisseria meningitidis 053442 (nmn) | 2 |
  |   | Nitrosospira multiformis (nmu) | 5 |
  |   | Nitrosococcus oceani (noc) | 5 |
  |   | Nitrobacter winogradskyi (nwi) | 233 |
  |   | Ochrobactrum anthropi (oan) | 10 |
  |   | Pseudomonas aeruginosa PAO1 (pae) | 9 |
  |   | Pseudomonas aeruginosa PA7 (pap) | 6 |
  |   | Psychrobacter arcticum (par) | 1 |
  |   | Pseudomonas aeruginosa UCBPP-PA14 (pau) | 3 |
  |   | Pelobacter carbinolicus (pca) | 5 |
  |   | Paracoccus denitrificans (pde) | 20 |
  |   | Pseudomonas entomophila (pen) | 2 |
  |   | Pseudomonas fluorescens Pf-5 (pfl) | 3 |
  |   | Pseudomonas fluorescens PfO-1 (pfo) | 3 |
  |   | Psychromonas ingrahamii (pin) | 2 |
  |   | Parvibaculum lavamentivorans (pla) | 18 |
  |   | Photorhabdus luminescens (plu) | 2 |
  |   | Pseudomonas mendocina (pmy) | 2 |
  |   | Polaromonas naphthalenivorans (pna) | 13 |
  |   | Polynucleobacter sp. QLW-P1DMWA-1 (pnu) | 2 |
  |   | Polaromonas sp. JS666 (pol) | 8 |
  |   | Pelobacter propionicus (ppd) | 2 |
  |   | Pseudomonas putida F1 (ppf) | 2 |
  |   | Pseudomonas putida KT2440 (ppu) | 1 |
  |   | Pseudomonas stutzeri (psa) | 4 |
  |   | Pseudomonas syringae pv. syringae B728a (psb) | 3 |
  |   | Pseudomonas syringae pv. phaseolicola 1448A (psp) | 1 |
  |   | Pseudomonas syringae pv. tomato DC3000 (pst) | 1 |
  |   | Roseobacter denitrificans (rde) | 5 |
  |   | Ralstonia eutropha H16 (reh) | 8 |
  |   | Rhizobium etli (ret) | 21 |
  |   | Ralstonia eutropha JMP134 (reu) | 5 |
  |   | Rickettsia felis (rfe) | 1 |
  |   | Rhodoferax ferrireducens (rfr) | 11 |
  |   | Rhizobium leguminosarum (rle) | 29 |
  |   | Ralstonia metallidurans (rme) | 3 |
  |   | Rickettsia prowazekii (rpr) | 1 |
  |   | Rhodospirillum rubrum (rru) | 150 |
  |   | Rhodobacter sphaeroides ATCC 17029 (rsh) | 10 |
  |   | Ralstonia solanacearum (rso) | 15 |
  |   | Rhodobacter sphaeroides 2.4.1 (rsp) | 6 |
  |   | Rhodobacter sphaeroides ATCC 17025 (rsq) | 21 |
  |   | Sphingopyxis alaskensis (sal) | 3 |
  |   | Syntrophus aciditrophicus (sat) | 3 |
  |   | Shewanella amazonensis (saz) | 2 |
  |   | Shewanella baltica OS155 (sbl) | 1 |
  |   | Sorangium cellulosum (scl) | 14 |
  |   | Saccharophagus degradans (sde) | 2 |
  |   | Shewanella denitrificans (sdn) | 2 |
  |   | Salmonella enterica serovar Choleraesuis (sec) | 3 |
  |   | Syntrophobacter fumaroxidans (sfu) | 4 |
  |   | Shewanella sp. MR-4 (she) | 1 |
  |   | Shewanella sp. W3-18-1 (shw) | 1 |
  |   | Silicibacter pomeroyi (sil) | 5 |
  |   | Silicibacter sp. TM1040 (sit) | 6 |
  |   | Sinorhizobium medicae (smd) | 1 |
  |   | Sinorhizobium meliloti (sme) | 13 |
  |   | Serratia proteamaculans (spe) | 2 |
  |   | Salmonella enterica serovar Paratyphi B (spq) | 1 |
  |   | Shewanella sediminis (sse) | 1 |
  |   | Shigella sonnei (ssn) | 1 |
  |   | Salmonella typhimurium LT2 (stm) | 1 |
  |   | Sulfurovum sp. NBC37-1 (sun) | 1 |
  |   | Sphingomonas wittichii (swi) | 14 |
  |   | Thiobacillus denitrificans (tbd) | 3 |
  |   | Thiomicrospira crunogena (tcx) | 1 |
  |   | Verminephrobacter eiseniae (vei) | 6 |
  |   | Vibrio harveyi (vha) | 1 |
  |   | Vibrio vulnificus CMCP6 (vvu) | 1 |
  |   | Vibrio vulnificus YJ016 (vvy) | 2 |
  |   | Xanthomonas axonopodis (xac) | 2 |
  |   | Xanthobacter autotrophicus (xau) | 89 |
  |   | Xanthomonas campestris pv. campestris 8004 (xcb) | 1 |
  |   | Xanthomonas campestris pv. vesicatoria (xcv) | 3 |
  |   | Xylella fastidiosa Temecula1 (xft) | 1 |
  |   | Xanthomonas oryzae MAFF311018 (xom) | 2 |
  |   | Yersinia enterocolitica (yen) | 11 |
  |   | Zymomonas mobilis (zmo) | 4 |
  | Spirochete |   | 1 |
  |   | Treponema denticola (tde) | 1 |
Eukaryotes |   |   | 10 |
  | Animals |   | 3 |
  |   | Nematostella vectensis (sea anemone) (nve) | 3 |
  | Fungi |   | 6 |
  |   | Aspergillus niger (ang) | 1 |
  |   | Aspergillus oryzae (aor) | 1 |
  |   | Fusarium graminearum (fgr) | 2 |
  |   | Magnaporthe grisea (mgr) | 1 |
  |   | Yarrowia lipolytica (yli) | 1 |
  | Protists |   | 1 |
  |   | Dictyostelium discoideum (ddi) | 1 |
NULL |   |   | 280 |
TOTAL |   |   | 4886 |
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