BLASTX+BEAUTY Search Results

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BLASTX+BEAUTY Search Results

WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.
BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.
BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract
Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract




Repeat sequence:
   SW  perc perc perc  query     position in query    matching repeat        position in  repeat
score  div. del. ins.  sequence  begin  end (left)    repeat   class/family  begin  end (left)

  198   0.0  0.0  0.0  A01d03      737  758  (144) +  (A)n     Simple_repeat     1   22    (0)  

Alignments:
 198  0.00 0.00 0.00  A01d03      737   758 (144)    (A)n#Simple_repeat        1    22 (158)  

  A01d03             737 AAAAAAAAAAAAAAAAAAAAAA 758
                                               
  (A)n#Simple_rep      1 AAAAAAAAAAAAAAAAAAAAAA 22

Transitions / transversions = 1.00 (0 / 0)
Gap_init rate = 0.00 (0 / 22), avg. gap size = 0.00 (0 / 0)  

Masked Sequence:
>A01d03
TTCGGCACGAGCTAAGAAGAAGGAAATGGCTTCCTCAATGATCTCCTCCC
CAGCTGTTACCACCGTCAACCGTGCCGGTGCCGGCATGGTTGCTCCATTC
ACCGGCCTCAAATCCATGGCTGGCTTCCCCACGAGGAAGACCAACAATGA
CATTACCTCCATTGCTAGCAACGGTGGAAGAGTACAATGCATGCAGGTGT
GGCCACCAATTGGCAAGAANAAGTTCGAGACTCTTTCCTACTTGCCAGAC
CTCGATGATGCCCAATTGGCAAAGGAAGTCGAATACCTTCTAAGGAAAGG
ATGGATTCCTTGCTTGGAATTCGAGTTGGAGCACGGTTTCGTGTACCGTG
AGCACAACAGGTCACCTGGATACTATGATGGACGCTACTGGACCATGTGG
AAGCTGCCTATGTTTGGCTGCACTGATGCTTCTCAGGTGTTGAAGGAGCT
TCAAGANGCTAAGACTGCATACCCCAATGGCTTCATCCGTATCATTGGAT
TTGACAACGTTCGCCAAGTGCAGTGCATCAGCTTCATCGCCTACAAGCCC
CCANGCTTCTAANTCATTGAAAAATTTGCAAAGCATCTGTANCCACCCCA
CTTTGTTTGTTGTACTTAAACTACATTCCCATTTGTTTTTGCTTTATGAA
ATTTCATCATCCTGTATTTTTGGTTTCTGTTTTCCGACTTCAATGGAAAT
TAATGGATGAAAACTAATGAATAANCTATTGTGTTGNNNNNNNNNNNNNN
NNNNNNNNCTCCAAGGGGGGGCCNGTTCCCNATTCCCCTATATTAATCTT
NTTACAATCNCNGGGCCGTCNTTTACAACNTCTTNANTGGGAAAANCCGG
NNTTACCANTTAATCCCTTGCACANATCCCCTTTCCCACTTGGCTTATAC
AA

Summary:
==================================================
file name: /repeatmasker/tmp/RM2seq
sequences:          1
total length:     902 bp
GC level:       45.24 %
bases masked       22 bp (  2.44 %)
==================================================
               number of      length   percentage
               elements*    occupied  of sequence
--------------------------------------------------
SINEs:               0           0 bp     0.00 %
      ALUs           0           0 bp     0.00 %
      MIRs           0           0 bp     0.00 %

LINEs:               0           0 bp     0.00 %
      LINE1          0           0 bp     0.00 %
      LINE2          0           0 bp     0.00 %

LTR elements:        0           0 bp     0.00 %
      MaLRs          0           0 bp     0.00 %
      Retrov.        0           0 bp     0.00 %
      MER4_group     0           0 bp     0.00 %

DNA elements:        0           0 bp     0.00 %
      MER1_type      0           0 bp     0.00 %
      MER2_type      0           0 bp     0.00 %
      Mariners       0           0 bp     0.00 %

Unclassified:        0           0 bp     0.00 %

Total interspersed repeats:      0 bp     0.00 %


Small RNA:           0           0 bp     0.00 %

Satellites:          0           0 bp     0.00 %
Simple repeats:      1          22 bp     2.44 %
Low complexity:      0           0 bp     0.00 %
==================================================

* most repeats fragmented by insertions or deletions
  have been counted as one element

The sequence(s) were assumed to be of primate origin.
RepeatMasker version  05/05/99               default
ProcessRepeats version  05/05/99
Repbase version 3.04


Reference:  Gish, Warren (1994-1997).  unpublished.
Gish, Warren and David J. States (1993).  Identification of protein coding
regions by database similarity search.  Nat. Genet. 3:266-72.

Notice:  statistical significance is estimated under the assumption that the
equivalent of one entire reading frame in the query sequence codes for protein
and that significant alignments will involve only coding reading frames.

Query=  A01d03
        (902 letters)
  Translating both strands of query sequence in all 6 reading frames

Database:  nr
           505,245 sequences; 158,518,215 total letters.


     Observed Numbers of Database Sequences Satisfying
    Various EXPECTation Thresholds (E parameter values)

        Histogram units:      = 3 Sequences     : less than 3 sequences

 EXPECTation Threshold
 (E parameter)
    |
    V   Observed Counts-->
  10000 1129 158 |====================================================
   6310  971 133 |============================================
   3980  838 111 |=====================================
   2510  727 119 |=======================================
   1580  608  79 |==========================
   1000  529  47 |===============
    631  482  35 |===========
    398  447  21 |=======
    251  426  20 |======
    158  406  15 |=====
    100  391   5 |=
   63.1  386   8 |==
   39.8  378   5 |=
   25.1  373   3 |=
   15.8  370   7 |==
 >>>>>>>>>>>>>>>>>>>>>  Expect = 10.0, Observed = 363  <<<<<<<<<<<<<<<<<
   10.0  363   4 |=
   6.31  359   0 |
   3.98  359   2 |:
   2.51  357   2 |:
   1.58  355   4 |=
   1.00  351   4 |=
   0.63  347   7 |==
   0.40  340  10 |===
   0.25  330   7 |==
   0.16  323   0 |
   0.10  323   3 |=
  0.063  320   0 |
  0.040  320   4 |=
  0.025  316   6 |==
  0.016  310   3 |=
  0.010  307   0 |
 0.0063  307   2 |:
 0.0040  305   1 |:
 0.0025  304   5 |=


                                                                     Smallest
                                                                       Sum
                                                     Reading  High  Probability
Sequences producing High-scoring Segment Pairs:        Frame Score  P(N)      N
gi|1055368|gb|AAA81328.1|(U39567) ribulose-1,5-bispho... +2   939  1.9e-93   1
gi|132086|sp|P00865|RBS1_SOYBNRIBULOSE BISPHOSPHATE C... +2   933  8.2e-93   1
gi|1079736|gb|AAA82069.1|(U39856) ribulose 1,5-bispho... +2   931  1.3e-92   1
gi|132113|sp|P12468|RBS4_SOYBNRIBULOSE BISPHOSPHATE C... +2   924  7.4e-92   1
gi|3914591|sp|Q42823|RBS_GLYTARIBULOSE BISPHOSPHATE C... +2   906  6.0e-90   1
gi|3914590|sp|Q42822|RBS_GLYTORIBULOSE BISPHOSPHATE C... +2   901  2.0e-89   1
gi|81885|pir||S20508ribulose-bisphosphate carboxylase... +2   836  1.6e-82   1
gi|4689388|gb|AAD27881.1|AF139469_1(AF139469) ribulos... +2   811  6.9e-80   1
gi|3928152|emb|CAA10290.1|(AJ131050) ribulose 1,5-bis... +2   779  1.7e-76   1
gi|403160|gb|AAA33866.1|(L24497) ribulose 1,5-bisphos... +2   761  1.4e-74   1
gi|132091|sp|P27985|RBS2_BRANARIBULOSE BISPHOSPHATE C... +2   759  2.2e-74   1
gi|132098|sp|P04715|RBS2_PETSPRIBULOSE BISPHOSPHATE C... +2   756  4.7e-74   1
gi|132102|sp|P10797|RBS3_ARATHRIBULOSE BISPHOSPHATE C... +2   754  7.6e-74   1
gi|132154|sp|P08135|RBS_RAPSARIBULOSE BISPHOSPHATE CA... +2   754  7.6e-74   1
gi|132090|sp|P10796|RBS2_ARATHRIBULOSE BISPHOSPHATE C... +2   753  9.7e-74   1
gi|132110|sp|P10798|RBS4_ARATHRIBULOSE BISPHOSPHATE C... +2   753  9.7e-74   1
gi|266891|sp|P05346|RBS1_BRANARIBULOSE BISPHOSPHATE C... +2   752  1.2e-73   1
gi|480983|pir||S37575ribulose-bisphosphate carboxylas... +2   752  1.2e-73   1
gi|4204274|gb|AAD10655.1|(AC004146) ribulose bisphosp... +2   751  1.6e-73   1
gi|132074|sp|P10795|RBS1_ARATHRIBULOSE BISPHOSPHATE C... +2   750  2.0e-73   1
gi|585786|sp|P16032|RBS1_MESCRRIBULOSE BISPHOSPHATE C... +2   745  6.8e-73   1
gi|132083|sp|P04714|RBS1_PETSPRIBULOSE BISPHOSPHATE C... +2   744  8.7e-73   1
gi|3914601|sp|O65194|RBS_MEDSARIBULOSE BISPHOSPHATE C... +2   744  8.7e-73   1
gi|132071|sp|P10647|RBS0_SOLTURIBULOSE BISPHOSPHATE C... +2   741  1.8e-72   1
gi|68064|pir||RKRPSribulose-bisphosphate carboxylase ... +2   740  2.3e-72   1
gi|68052|pir||RKIXSribulose-bisphosphate carboxylase ... +2   740  2.3e-72   1
gi|295792|emb|CAA31948.1|(X13611) ribulose bisphospha... +2   739  3.0e-72   1
gi|464595|sp|Q02980|RBS_MALSPRIBULOSE BISPHOSPHATE CA... +2   737  4.8e-72   1
gi|132097|sp|P00869|RBS2_PEARIBULOSE BISPHOSPHATE CAR... +2   737  4.8e-72   1
gi|132123|sp|P26576|RBSB_SOLTURIBULOSE BISPHOSPHATE C... +2   736  6.2e-72   1
gi|132160|sp|P00866|RBS_TOBACRIBULOSE BISPHOSPHATE CA... +2   735  7.9e-72   1
gi|132120|sp|P26575|RBSA_SOLTURIBULOSE BISPHOSPHATE C... +2   735  7.9e-72   1
gi|132125|sp|P26577|RBSC_SOLTURIBULOSE BISPHOSPHATE C... +2   735  7.9e-72   1
gi|417593|sp|P32764|RBS3_SOLTURIBULOSE BISPHOSPHATE C... +2   735  7.9e-72   1
gi|3914592|sp|Q96542|RBS_BETVERIBULOSE BISPHOSPHATE C... +2   735  7.9e-72   1
gi|132106|sp|P07689|RBS3_PEARIBULOSE BISPHOSPHATE CAR... +2   732  1.6e-71   1
gi|132153|sp|P24007|RBS_PYRPYRIBULOSE BISPHOSPHATE CA... +2   731  2.1e-71   1
gi|3914585|sp|O22077|RBS_FAGCRRIBULOSE BISPHOSPHATE C... +2   730  2.7e-71   1
gi|170504|gb|AAA34192.1|(M15236) ribulose-1,5-bisphos... +2   729  3.4e-71   1
gi|132095|sp|P07179|RBS2_LYCESRIBULOSE BISPHOSPHATE C... +2   728  4.3e-71   1
gi|1352821|sp|P31333|RBS_GOSHIRIBULOSE BISPHOSPHATE C... +2   728  4.3e-71   1
gi|3914606|sp|Q41351|RBS_STELPRIBULOSE BISPHOSPHATE C... +2   728  4.3e-71   1
gi|3914586|sp|O65349|RBS_CAPANRIBULOSE BISPHOSPHATE C... +2   728  4.3e-71   1
gi|132112|sp|P05349|RBS4_LYCESRIBULOSE BISPHOSPHATE C... +2   727  5.5e-71   1
gi|132104|sp|P07180|RBS3_LYCESRIBULOSE BISPHOSPHATE C... +2   725  9.0e-71   1
gi|132118|sp|P26573|RBS8_NICPLRIBULOSE BISPHOSPHATE C... +2   725  9.0e-71   1
gi|132085|sp|P26574|RBS1_SOLTURIBULOSE BISPHOSPHATE C... +2   721  2.4e-70   1
gi|132079|sp|P08706|RBS1_LYCESRIBULOSE BISPHOSPHATE C... +2   721  2.4e-70   1
gi|132080|sp|P22433|RBS1_NICSYRIBULOSE BISPHOSPHATE C... +2   718  5.0e-70   1
gi|170502|gb|AAA34191.1|(M15235) ribulose-1,5-bisphos... +2   717  6.3e-70   1



Locally-aligned regions (HSPs) with respect to query sequence:

Locus_ID                Frame 2 Hits
gi|1055368             | ______________________________                   
gi|132086              | ______________________________                   
gi|1079736             | ______________________________                   
gi|132113              | ______________________________                   
gi|3914591             | ______________________________                   
gi|3914590             | ______________________________                   
gi|81885               | ______________________________                   
gi|4689388             | ______________________________                   
gi|3928152             | ______________________________                   
gi|403160              | ______________________________                   
gi|132091              | ______________________________                   
gi|132098              | ______________________________                   
gi|132102              | ______________________________                   
gi|132154              | ______________________________                   
gi|132090              | ______________________________                   
gi|132110              | ______________________________                   
gi|266891              | ______________________________                   
gi|480983              | ______________________________                   
gi|4204274             | ______________________________                   
gi|132074              | ______________________________                   
gi|585786              | ______________________________                   
gi|132083              | ______________________________                   
gi|3914601             | ______________________________                   
gi|132071              | ______________________________                   
gi|68064               | ______________________________                   
gi|68052               | ______________________________                   
gi|295792              | ______________________________                   
gi|464595              | ______________________________                   
gi|132097              | ______________________________                   
gi|132123              | ______________________________                   
gi|132160              | ______________________________                   
gi|132120              | ______________________________                   
gi|132125              | ______________________________                   
gi|417593              | ______________________________                   
gi|3914592             | ______________________________                   
gi|132106              | ______________________________                   
gi|132153              | ______________________________                   
gi|3914585             | ______________________________                   
gi|170504              | ______________________________                   
gi|132095              | ______________________________                   
gi|1352821             | ______________________________                   
gi|3914606             | ______________________________                   
gi|3914586             | ______________________________                   
gi|132112              | ______________________________                   
gi|132104              | ______________________________                   
gi|132118              | ______________________________                   
gi|132085              | ______________________________                   
gi|132079              | ______________________________                   
gi|132080              | ______________________________                   
gi|170502              | ______________________________                   
Prosite Hits:                            __                               
                        __________________________________________________
Query sequence:        |        |       |       |        |       |       || 301
                       0       50     100     150      200     250     300
__________________
Prosite hits:
   PROKAR_LIPOPROTEIN   Prokaryotic membrane lipoprotein lipid a 104..114
__________________


Use the  and  icons to retrieve links to Entrez:
E = Retrieve Entrez links (e.g., Medline abstracts, FASTA-formatted sequence reports).
R = Retrieve links to Related sequences (neighbors).

Use the  icon (if present) to retrieve links to the Sequence Retrieval System (SRS).

Use the  icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .

Use the  icon (if present) to retrieve links to the Protein Data Bank database.

WARNING:  Descriptions of 313 database sequences were not reported due to the
          limiting value of parameter V = 50.



 >gi|1055368|gb|AAA81328.1|  (U39567) ribulose-1,5-bisphosphate carboxylase small
            subunit [Glycine max]
            Length = 178

Frame  2 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |             |             |             |        | 178
                       0            50           100           150

  Plus Strand HSPs:

 Score = 939 (330.5 bits), Expect = 1.9e-93, P = 1.9e-93
 Identities = 174/178 (97%), Positives = 175/178 (98%), Frame = +2

Query:    26 MASSMISSPAVTTVNRAGAGMVAPFTGLKSMAGFPTRKTNNDITSIASNGGRVQCMQVWP 205
             MASSMISSPAVTTVNRAGAGMVAPFTGLKSMAGFPTRKTNNDITSIASNGGRVQCMQVWP
Sbjct:     1 MASSMISSPAVTTVNRAGAGMVAPFTGLKSMAGFPTRKTNNDITSIASNGGRVQCMQVWP 60

Query:   206 PIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDGR 385
             P+GK KFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDGR
Sbjct:    61 PVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDGR 120

Query:   386 YWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPXF 559
             YWTMWKLPMFGCTDASQVLKELQ AKTAYPNGFIRIIGFDNVRQVQCISFIAYKPP F
Sbjct:   121 YWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPGF 178


 >gi|132086|sp|P00865|RBS1_SOYBN  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1
            PRECURSOR (RUBISCO SMALL SUBUNIT 1) >gi|68053|pir||RKSYS
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain
            precursor SRS1 - soybean >gi|18742|emb|CAA23736.1| (V00458)
            rubpcase [Glycine max]
            Length = 178

Frame  2 hits (HSPs):   __________________________________________________
Annotated Domains:          _____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 178
                       0            50           100           150
__________________

Annotated Domains:
   DOMO                 DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 56..175
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 56..175
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 18..35
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 44..62
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 65..91
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 93..108
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 115..144
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 149..175
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      21..54
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      56..174
__________________


  Plus Strand HSPs:

 Score = 933 (328.4 bits), Expect = 8.2e-93, P = 8.2e-93
 Identities = 174/178 (97%), Positives = 174/178 (97%), Frame = +2

Query:    26 MASSMISSPAVTTVNRAGAGMVAPFTGLKSMAGFPTRKTNNDITSIASNGGRVQCMQVWP 205
             MASSMISSPAVTTVNRAGAGMVAPFTGLKSMAGFPTRKTNNDITSIASNGGRVQCMQVWP
Sbjct:     1 MASSMISSPAVTTVNRAGAGMVAPFTGLKSMAGFPTRKTNNDITSIASNGGRVQCMQVWP 60

Query:   206 PIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDGR 385
             PIGK KFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSP YYDGR
Sbjct:    61 PIGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPXYYDGR 120

Query:   386 YWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPXF 559
             YWTMWKLPMFGCTDASQVLKELQ AKTAYPNGFIRIIGFDNVRQVQCISFIAYKPP F
Sbjct:   121 YWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPGF 178


 >gi|1079736|gb|AAA82069.1|  (U39856) ribulose 1,5-bisphosphate carboxylase small
            subunit precursor [Glycine soja]
            Length = 178

Frame  2 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |             |             |             |        | 178
                       0            50           100           150

  Plus Strand HSPs:

 Score = 931 (327.7 bits), Expect = 1.3e-92, P = 1.3e-92
 Identities = 173/178 (97%), Positives = 174/178 (97%), Frame = +2

Query:    26 MASSMISSPAVTTVNRAGAGMVAPFTGLKSMAGFPTRKTNNDITSIASNGGRVQCMQVWP 205
             MASSMISSPAVTTVNRAGAGMVAPFTGLKSMAGFPTRKTNNDITSIASNGGRVQCMQVWP
Sbjct:     1 MASSMISSPAVTTVNRAGAGMVAPFTGLKSMAGFPTRKTNNDITSIASNGGRVQCMQVWP 60

Query:   206 PIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDGR 385
             P+GK KFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDGR
Sbjct:    61 PVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDGR 120

Query:   386 YWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPXF 559
              WTMWKLPMFGCTDASQVLKELQ AKTAYPNGFIRIIGFDNVRQVQCISFIAYKPP F
Sbjct:   121 CWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPSF 178


 >gi|132113|sp|P12468|RBS4_SOYBN  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 4
            PRECURSOR (RUBISCO SMALL SUBUNIT 4) >gi|68054|pir||RKSYS4
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain
            precursor SRS4 - soybean >gi|170058|gb|AAA34008.1| (M16889)
            ribulose 1,5-bisphosphate carboxylase [Glycine max]
            >gi|225579|prf||1306410A ribulose bisphosphate carboxylase S
            [Glycine max]
            Length = 178

Frame  2 hits (HSPs):   __________________________________________________
Annotated Domains:          _____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 178
                       0            50           100           150
__________________

Annotated Domains:
   DOMO                 DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 56..175
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 56..175
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 18..35
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 44..62
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 65..91
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 93..108
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 115..144
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 149..175
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      21..54
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      56..174
__________________


  Plus Strand HSPs:

 Score = 924 (325.3 bits), Expect = 7.4e-92, P = 7.4e-92
 Identities = 172/178 (96%), Positives = 173/178 (97%), Frame = +2

Query:    26 MASSMISSPAVTTVNRAGAGMVAPFTGLKSMAGFPTRKTNNDITSIASNGGRVQCMQVWP 205
             MASSMISSPAVTTVNRAGAGMVAPFTGLKSMAG PTRKTNNDITSIASNGGRVQCMQVWP
Sbjct:     1 MASSMISSPAVTTVNRAGAGMVAPFTGLKSMAGLPTRKTNNDITSIASNGGRVQCMQVWP 60

Query:   206 PIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDGR 385
             P+GK KFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRS GYYDGR
Sbjct:    61 PVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSLGYYDGR 120

Query:   386 YWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPXF 559
             YWTMWKLPMFGCTDASQVLKELQ AKTAYPNGFIRIIGFDNVRQVQCISFIAYKPP F
Sbjct:   121 YWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPSF 178


 >gi|3914591|sp|Q42823|RBS_GLYTA  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            PRECURSOR (RUBISCO SMALL SUBUNIT) >gi|1079740|gb|AAA82071.1|
            (U39858) ribulose 1,5-bisphosphate carboxylase/oxygenase small
            subunit precursor [Glycine tabacina]
            Length = 178

Frame  2 hits (HSPs):   __________________________________________________
Annotated Domains:          _____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 178
                       0            50           100           150
__________________

Annotated Domains:
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 56..175
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 18..35
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 44..62
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 65..91
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 93..108
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 115..144
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 149..175
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      22..54
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      56..174
__________________


  Plus Strand HSPs:

 Score = 906 (318.9 bits), Expect = 6.0e-90, P = 6.0e-90
 Identities = 169/178 (94%), Positives = 170/178 (95%), Frame = +2

Query:    26 MASSMISSPAVTTVNRAGAGMVAPFTGLKSMAGFPTRKTNNDITSIASNGGRVQCMQVWP 205
             MASSMISSPAVTTVNRAGAG VAPFTGLKSMAGFPTRKTNNDI SIASNGGRVQCMQVWP
Sbjct:     1 MASSMISSPAVTTVNRAGAGTVAPFTGLKSMAGFPTRKTNNDIASIASNGGRVQCMQVWP 60

Query:   206 PIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDGR 385
               GK KFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREH+RSPGYYDGR
Sbjct:    61 TTGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHHRSPGYYDGR 120

Query:   386 YWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPXF 559
             YWTMWKLPMFGCTDASQVLKELQ AKTAYPN FIRIIGFDNVRQVQCISFIAYKPP F
Sbjct:   121 YWTMWKLPMFGCTDASQVLKELQEAKTAYPNAFIRIIGFDNVRQVQCISFIAYKPPSF 178


 >gi|3914590|sp|Q42822|RBS_GLYTO  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            PRECURSOR (RUBISCO SMALL SUBUNIT) >gi|1079738|gb|AAA82070.1|
            (U39857) ribulose 1,5-bisphosphate carboxylase/oxygenase small
            subunit precursor [Glycine tomentella]
            Length = 178

Frame  2 hits (HSPs):   __________________________________________________
Annotated Domains:          _____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 178
                       0            50           100           150
__________________

Annotated Domains:
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 56..175
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 18..35
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 44..62
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 65..91
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 93..108
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 115..144
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 149..175
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      22..54
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      56..174
__________________


  Plus Strand HSPs:

 Score = 901 (317.2 bits), Expect = 2.0e-89, P = 2.0e-89
 Identities = 168/178 (94%), Positives = 171/178 (96%), Frame = +2

Query:    26 MASSMISSPAVTTVNRAGAGMVAPFTGLKSMAGFPTRKTNNDITSIASNGGRVQCMQVWP 205
             MASSMISSPAVTTVNRAGAG VAPFTGLKSMAGFPTRKTNNDI SIASNGGRVQCMQVWP
Sbjct:     1 MASSMISSPAVTTVNRAGAGTVAPFTGLKSMAGFPTRKTNNDIASIASNGGRVQCMQVWP 60

Query:   206 PIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDGR 385
               GK KFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYRE++RSPGYYDGR
Sbjct:    61 TTGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYRENHRSPGYYDGR 120

Query:   386 YWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPXF 559
             YWTMWKLP+FGCTDASQVLKELQ AKTAYPNGFIRIIGFDNVRQVQCISFIAYKPP F
Sbjct:   121 YWTMWKLPVFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPSF 178


 >gi|81885|pir||S20508  ribulose-bisphosphate carboxylase (EC 4.1.1.39) small
            chain precursor - kidney bean >gi|21050|emb|CAA42618.1| (X60000)
            ribulose bisphosphate carboxylase [Phaseolus vulgaris]
            >gi|21053|emb|CAA40339.1| (X57022) small subunit of ribulose
            1,5-bisphosphate carboxylase/oxygenase [Phaseolus vulgaris]
            Length = 180

Frame  2 hits (HSPs):   __________________________________________________
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 180
                       0            50           100           150
__________________

Annotated Domains:
   DOMO                 DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 58..177
   Entrez               domain: transit peptide (chloroplast)    1..57
__________________


  Plus Strand HSPs:

 Score = 836 (294.3 bits), Expect = 1.6e-82, P = 1.6e-82
 Identities = 153/180 (85%), Positives = 167/180 (92%), Frame = +2

Query:    26 MASSMISSPAVTTVNRAGAG--MVAPFTGLKSMAGFPTRKTNNDITSIASNGGRVQCMQV 199
             MASSMISSPAVTTVNRAGAG  MVAPFTGLKS+ GFP+RK NNDITS+A+NGGRVQC+QV
Sbjct:     1 MASSMISSPAVTTVNRAGAGAGMVAPFTGLKSLGGFPSRKMNNDITSVANNGGRVQCIQV 60

Query:   200 WPPIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYD 379
             WP +GK KFETLSYLP L   QLAKEV+YLLRKGW+PCLEFELEHGFVYREHN+SPGYYD
Sbjct:    61 WPTVGKKKFETLSYLPPLTKQQLAKEVDYLLRKGWVPCLEFELEHGFVYREHNKSPGYYD 120

Query:   380 GRYWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPXF 559
             GRYWTMWKLPMFGCTD+SQVLKEL  A+TA+P+GFIRIIGFDNVRQVQCISFIAYKPP +
Sbjct:   121 GRYWTMWKLPMFGCTDSSQVLKELYEAQTAHPDGFIRIIGFDNVRQVQCISFIAYKPPGY 180


 >gi|4689388|gb|AAD27881.1|AF139469_1  (AF139469) ribulose-1,5-bisphosphate
            carboxylase small subunit [Vigna radiata]
            Length = 181

Frame  2 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |             |             |             |        | 181
                       0            50           100           150

  Plus Strand HSPs:

 Score = 811 (285.5 bits), Expect = 6.9e-80, P = 6.9e-80
 Identities = 149/181 (82%), Positives = 165/181 (91%), Frame = +2

Query:    26 MASSMISSPAVTTVNRAGA-GMVAPFTGLKSMAGFPTRKTNNDITSIASNGGRVQCMQVW 202
             MASSMISSPAVTTVNRAGA GMVAPFTGLKS+ GFPTRKTNNDITS+A+NGGRVQCMQVW
Sbjct:     1 MASSMISSPAVTTVNRAGAAGMVAPFTGLKSLGGFPTRKTNNDITSVANNGGRVQCMQVW 60

Query:   203 PPIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEH--GFVYREHNRSPGYY 376
             P IGK KFETLSYLPDL + QL KEV+YLLR GWIPCLEFEL H   F +RE+NRSPGYY
Sbjct:    61 PTIGKKKFETLSYLPDLTEEQLGKEVDYLLRSGWIPCLEFELSHKDAFPHRENNRSPGYY 120

Query:   377 DGRYWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPX 556
             DGRYWTMWKLPM+GCTD+SQVLKEL+ A+T YP+GF+RI+GFD+VRQVQCISFIAYKPP 
Sbjct:   121 DGRYWTMWKLPMYGCTDSSQVLKELREARTLYPDGFVRIVGFDSVRQVQCISFIAYKPPG 180

Query:   557 F 559
             +
Sbjct:   181 Y 181


 >gi|3928152|emb|CAA10290.1|  (AJ131050) ribulose 1,5-bisphosphate carboxylase
            small subunit [Cicer arietinum]
            Length = 181

Frame  2 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |             |             |             |        | 181
                       0            50           100           150

  Plus Strand HSPs:

 Score = 779 (274.2 bits), Expect = 1.7e-76, P = 1.7e-76
 Identities = 147/181 (81%), Positives = 154/181 (85%), Frame = +2

Query:    26 MASSMISSPAVTTVNRAGA---GMVAPFTGLKSMAGFPTRKTNNDITSIASNGGRVQCMQ 196
             MASSMISS AVTTV RA +   G VAPF GLKSMAGFP RK NNDITSIASNGGRV CMQ
Sbjct:     1 MASSMISSSAVTTVKRASSVPSGAVAPFVGLKSMAGFPVRKVNNDITSIASNGGRVHCMQ 60

Query:   197 VWPPIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYY 376
             VWPPIGK KFETLSYLP L + QL KEVEYLLRKGW+PCLEFELE GFVYREHN SPGYY
Sbjct:    61 VWPPIGKKKFETLSYLPPLTEEQLLKEVEYLLRKGWVPCLEFELEKGFVYREHNNSPGYY 120

Query:   377 DGRYWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPX 556
             DGRYWTMWKLP+FGCT+A QVLKELQ    AYPN F+RIIGFDNVRQVQCISFIA+ P  
Sbjct:   121 DGRYWTMWKLPLFGCTEAVQVLKELQEVVKAYPNAFVRIIGFDNVRQVQCISFIAHTPKE 180

Query:   557 F 559
             F
Sbjct:   181 F 181


 >gi|403160|gb|AAA33866.1|  (L24497) ribulose 1,5-bisphosphate carboxylase small
            subunit [Malus domestica X Pyrus communis]
            Length = 179

Frame  2 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |             |             |             |        | 179
                       0            50           100           150

  Plus Strand HSPs:

 Score = 761 (267.9 bits), Expect = 1.4e-74, P = 1.4e-74
 Identities = 143/177 (80%), Positives = 153/177 (86%), Frame = +2

Query:    26 MASSMISSPAVTTVNR-AGAGMVAPFTGLKSMAGFPTRKTNNDITSIASNGGRVQCMQVW 202
             MASSMISS  V TV+  A A MVAPFTGLKS + FP  + +NDITSIASNGGRVQCMQVW
Sbjct:     1 MASSMISSGTVATVSAPAQARMVAPFTGLKSSSAFPVTRKSNDITSIASNGGRVQCMQVW 60

Query:   203 PPIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDG 382
             PP+G  KFETLSYLP L    LAKEV+YLLRK W+PCLEFELEHGFVYRE+NRSPGYYDG
Sbjct:    61 PPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENNRSPGYYDG 120

Query:   383 RYWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPP 553
             RYWTMWKLPMFGCTD+SQVLKEL+ AK AYP  FIRIIGFDNVRQVQCISFIAYKPP
Sbjct:   121 RYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPP 177


 >gi|132091|sp|P27985|RBS2_BRANA  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            F1 PRECURSOR (RUBISCO SMALL SUBUNIT F1) >gi|68065|pir||RKRPF1
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain
            precursor (gene rbcSF1) - rape >gi|17852|emb|CAA39402.1| (X55937)
            ribulose bisphosphate carboxylase  /oxygenase small subunit
            [Brassica napus]
            Length = 181

Frame  2 hits (HSPs):   _________________________________________________ 
Annotated Domains:          _____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 181
                       0            50           100           150
__________________

Annotated Domains:
   DOMO                 DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 56..175
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 56..175
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 17..34
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 44..62
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 65..91
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 93..108
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 115..144
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 149..175
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      20..54
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      56..174
__________________


  Plus Strand HSPs:

 Score = 759 (267.2 bits), Expect = 2.2e-74, P = 2.2e-74
 Identities = 141/178 (79%), Positives = 154/178 (86%), Frame = +2

Query:    26 MASSMISSPAVTTVNRAGAGMVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCMQVW 202
             MASSM+SS AV T + A A MVAPFTGLKS A FP TRK NNDITSIASNGGRV CM+VW
Sbjct:     1 MASSMLSSAAVVT-SPAQATMVAPFTGLKSSAAFPVTRKANNDITSIASNGGRVSCMKVW 59

Query:   203 PPIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDG 382
             PP+GK KFETLSYLPDL + +L KEV+YLLR  WIPC+EFELEHGFVYREH  +PGYYDG
Sbjct:    60 PPVGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDG 119

Query:   383 RYWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPXF 559
             RYWTMWKLP+FGCTD++QVLKE+Q  KT YPN FIRIIGFDN RQVQCISFIAYKPP F
Sbjct:   120 RYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKPPSF 178


 >gi|132098|sp|P04715|RBS2_PETSP  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            SSU11A PRECURSOR (RUBISCO SMALL SUBUNIT SSU11A)
            >gi|68085|pir||RKPJS1 ribulose-bisphosphate carboxylase (EC
            4.1.1.39) small chain (ssu11A) precursor - garden petunia
            >gi|20493|emb|CAA27445.1| (X03821) ribulose 1,5-bisphosphate
            carboxylase [Petunia x hybrida]
            Length = 180

Frame  2 hits (HSPs):   __________________________________________________
Annotated Domains:           ____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 180
                       0            50           100           150
__________________

Annotated Domains:
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 58..177
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 19..36
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 46..64
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 67..93
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 95..110
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 117..146
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 151..177
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      21..56
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      58..176
   PROSITE              SOYBEAN_KUNITZ: Soybean trypsin inhibito 75..91
__________________


  Plus Strand HSPs:

 Score = 756 (266.1 bits), Expect = 4.7e-74, P = 4.7e-74
 Identities = 143/180 (79%), Positives = 155/180 (86%), Frame = +2

Query:    26 MASSMISSPAV-TTVNRAGAGMVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCMQV 199
             MASS++SS AV T+ N A A MVAPFTGLKS A FP +RK N DITSIASNGGRVQCMQV
Sbjct:     1 MASSVMSSAAVATSTNAAQASMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQV 60

Query:   200 WPPIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYD 379
             WPP GK K+ETLSYLPDL D QL KE+EYLL KGW+PCLEFE EHGFVYRE++ SP YYD
Sbjct:    61 WPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYD 120

Query:   380 GRYWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPXF 559
             GRYWTMWKLPMFGCTDA+QVL ELQ AK AYPN +IRIIGFDNVRQVQCISFIAYKPP +
Sbjct:   121 GRYWTMWKLPMFGCTDATQVLGELQEAKKAYPNAWIRIIGFDNVRQVQCISFIAYKPPGY 180


 >gi|132102|sp|P10797|RBS3_ARATH  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            2B PRECURSOR (RUBISCO SMALL SUBUNIT 2B) >gi|68061|pir||RKMUB2
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain B2
            precursor - Arabidopsis thaliana >gi|16194|emb|CAA32701.1| (X14564)
            ribulose bisphosphate carboxylase [Arabidopsis thaliana]
            Length = 181

Frame  2 hits (HSPs):   _________________________________________________ 
Annotated Domains:          _____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 181
                       0            50           100           150
__________________

Annotated Domains:
   DOMO                 DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 56..175
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 56..175
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 17..34
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 44..62
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 65..91
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 93..108
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 115..144
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 149..175
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      20..54
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      56..174
__________________


  Plus Strand HSPs:

 Score = 754 (265.4 bits), Expect = 7.6e-74, P = 7.6e-74
 Identities = 140/178 (78%), Positives = 152/178 (85%), Frame = +2

Query:    26 MASSMISSPAVTTVNRAGAGMVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCMQVW 202
             MASSM+SS AV T + A A MVAPFTGLKS A FP TRK NNDITSI SNGGRV CM+VW
Sbjct:     1 MASSMLSSTAVVT-SPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVW 59

Query:   203 PPIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDG 382
             PPIGK KFETLSYLPDL D +LAKEV+YLLR  WIPC+EFELEHGFVYREH  +PGYYDG
Sbjct:    60 PPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDG 119

Query:   383 RYWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPXF 559
             RYWTMWKLP+FGCTD++QVLKE++  K  YP  FIRIIGFDN RQVQCISFIAYKPP F
Sbjct:   120 RYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSF 178


 >gi|132154|sp|P08135|RBS_RAPSA  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            PRECURSOR (RUBISCO SMALL SUBUNIT) >gi|68059|pir||RKRVS
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain
            precursor - radish >gi|755803|emb|CAA29801.1| (X06558) carboxylase
            [Raphanus sativus] >gi|226003|prf||1405335A ribulose bisphosphate
            carboxylase S [Raphanus sativus]
            Length = 181

Frame  2 hits (HSPs):   _________________________________________________ 
Annotated Domains:          _____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 181
                       0            50           100           150
__________________

Annotated Domains:
   DOMO                 DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 56..175
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 56..175
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 17..34
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 44..62
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 65..91
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 93..108
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 115..144
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 149..175
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      20..54
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      56..174
__________________


  Plus Strand HSPs:

 Score = 754 (265.4 bits), Expect = 7.6e-74, P = 7.6e-74
 Identities = 141/178 (79%), Positives = 153/178 (85%), Frame = +2

Query:    26 MASSMISSPAVTTVNRAGAGMVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCMQVW 202
             MASSM+SS AV T ++  A MVAPFTGLKS A FP TRKTN DITSIASNGGRV CM+VW
Sbjct:     1 MASSMLSSAAVVT-SQLQATMVAPFTGLKSSAAFPVTRKTNTDITSIASNGGRVSCMKVW 59

Query:   203 PPIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDG 382
             PPIGK KFETLSYLPDL D +LAKEV+YLLR  WIPC+EFELEHGFVYREH  +PGYYDG
Sbjct:    60 PPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDG 119

Query:   383 RYWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPXF 559
             RYWTMWKLP+FGCTD++QVLKE+Q  K  YPN  IRIIGFDN RQVQCISFIAYKPP F
Sbjct:   120 RYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNALIRIIGFDNNRQVQCISFIAYKPPSF 178


 >gi|132090|sp|P10796|RBS2_ARATH  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            1B PRECURSOR (RUBISCO SMALL SUBUNIT 1B) >gi|68062|pir||RKMUB1
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain B1
            precursor - Arabidopsis thaliana >gi|16193|emb|CAA32700.1| (X14564)
            ribulose bisphosphate carboxylase [Arabidopsis thaliana]
            Length = 181

Frame  2 hits (HSPs):   _________________________________________________ 
Annotated Domains:          _____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 181
                       0            50           100           150
__________________

Annotated Domains:
   DOMO                 DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 56..175
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 56..175
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 17..34
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 44..62
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 65..91
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 93..108
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 115..144
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 149..175
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      20..54
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      56..174
__________________


  Plus Strand HSPs:

 Score = 753 (265.1 bits), Expect = 9.7e-74, P = 9.7e-74
 Identities = 140/178 (78%), Positives = 152/178 (85%), Frame = +2

Query:    26 MASSMISSPAVTTVNRAGAGMVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCMQVW 202
             MASSM+SS AV T + A A MVAPFTGLKS A FP TRK NNDITSI SNGGRV CM+VW
Sbjct:     1 MASSMLSSAAVVT-SPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVW 59

Query:   203 PPIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDG 382
             PPIGK KFETLSYLPDL D +LAKEV+YLLR  WIPC+EFELEHGFVYREH  +PGYYDG
Sbjct:    60 PPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDG 119

Query:   383 RYWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPXF 559
             RYWTMWKLP+FGCTD++QVLKE++  K  YP  FIRIIGFDN RQVQCISFIAYKPP F
Sbjct:   120 RYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSF 178


 >gi|132110|sp|P10798|RBS4_ARATH  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            3B PRECURSOR (RUBISCO SMALL SUBUNIT 3B) >gi|68060|pir||RKMUB3
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain B3
            precursor - Arabidopsis thaliana >gi|16195|emb|CAA32702.1| (X14564)
            ribulose bisphosphate carboxylase [Arabidopsis thaliana]
            Length = 181

Frame  2 hits (HSPs):   _________________________________________________ 
Annotated Domains:          _____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 181
                       0            50           100           150
__________________

Annotated Domains:
   DOMO                 DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 56..175
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 56..175
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 17..34
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 44..62
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 65..91
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 93..108
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 115..144
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 149..175
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      20..54
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      56..174
__________________


  Plus Strand HSPs:

 Score = 753 (265.1 bits), Expect = 9.7e-74, P = 9.7e-74
 Identities = 140/178 (78%), Positives = 152/178 (85%), Frame = +2

Query:    26 MASSMISSPAVTTVNRAGAGMVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCMQVW 202
             MASSM+SS AV T + A A MVAPFTGLKS A FP TRKTN DITSI SNGGRV CM+VW
Sbjct:     1 MASSMLSSAAVVT-SPAQATMVAPFTGLKSSAAFPVTRKTNKDITSITSNGGRVSCMKVW 59

Query:   203 PPIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDG 382
             PPIGK KFETLSYLPDL D +LAKEV+YLLR  WIPC+EFELEHGFVYREH  +PGYYDG
Sbjct:    60 PPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDG 119

Query:   383 RYWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPXF 559
             RYWTMWKLP+FGCTD++QVLKE++  K  YP  FIRIIGFDN RQVQCISFIAYKPP F
Sbjct:   120 RYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPPSF 178


 >gi|266891|sp|P05346|RBS1_BRANA  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            PRECURSOR (RUBISCO SMALL SUBUNIT) >gi|486998|pir||S37292
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain
            precursor - rape >gi|17850|emb|CAA43410.1| (X61097) ribulose
            bisphosphate carboxylase [Brassica napus]
            Length = 181

Frame  2 hits (HSPs):   _________________________________________________ 
Annotated Domains:          _____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 181
                       0            50           100           150
__________________

Annotated Domains:
   DOMO                 DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 56..175
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 56..175
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 17..34
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 44..62
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 65..91
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 93..108
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 115..144
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 149..175
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      20..54
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      56..174
__________________


  Plus Strand HSPs:

 Score = 752 (264.7 bits), Expect = 1.2e-73, P = 1.2e-73
 Identities = 139/178 (78%), Positives = 153/178 (85%), Frame = +2

Query:    26 MASSMISSPAVTTVNRAGAGMVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCMQVW 202
             MASSM+SS AV T + A A MVAPFTGLKS + FP TRK NNDITSI SNGGRV CM+VW
Sbjct:     1 MASSMLSSAAVVT-SPAQATMVAPFTGLKSSSAFPVTRKANNDITSIVSNGGRVSCMKVW 59

Query:   203 PPIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDG 382
             PP+GK KFETLSYLPDL + +L KEV+YLLR  WIPC+EFELEHGFVYREH  +PGYYDG
Sbjct:    60 PPVGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDG 119

Query:   383 RYWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPXF 559
             RYWTMWKLP+FGCTD++QVLKE+Q  KT YPN FIRIIGFDN RQVQCISFIAYKPP F
Sbjct:   120 RYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKPPSF 178


 >gi|480983|pir||S37575  ribulose-bisphosphate carboxylase (EC 4.1.1.39) small
            chain - rape >gi|406727|emb|CAA53083.1| (X75334)
            ribulose-bisphosphate carboxylase [Brassica napus]
            Length = 181

Frame  2 hits (HSPs):   _________________________________________________ 
Annotated Domains:                     __________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 181
                       0            50           100           150
__________________

Annotated Domains:
   DOMO                 DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 56..175
__________________


  Plus Strand HSPs:

 Score = 752 (264.7 bits), Expect = 1.2e-73, P = 1.2e-73
 Identities = 140/178 (78%), Positives = 153/178 (85%), Frame = +2

Query:    26 MASSMISSPAVTTVNRAGAGMVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCMQVW 202
             MASSM+SS  V + + A A MVAPFTGLKS A FP TRKTN DITSIASNGGRV CM+VW
Sbjct:     1 MASSMLSSATVVS-SPAQAAMVAPFTGLKSSAAFPVTRKTNTDITSIASNGGRVNCMKVW 59

Query:   203 PPIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDG 382
             PP+GK KFETLSYLPDL D +LAKEV+YLLR  WIPC+EFELEHGFVYREH  +PGY DG
Sbjct:    60 PPVGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYNDG 119

Query:   383 RYWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPXF 559
             RYWTMWKLP+FGCTD++QVLKE+Q  KT YPN FIRIIGFDN RQVQCISFIAYKPP F
Sbjct:   120 RYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKPPSF 178


 >gi|4204274|gb|AAD10655.1|  (AC004146) ribulose bisphosphate carboxylase, small
            subunit [Arabidopsis thaliana]
            Length = 180

Frame  2 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |             |             |             |        | 180
                       0            50           100           150

  Plus Strand HSPs:

 Score = 751 (264.4 bits), Expect = 1.6e-73, P = 1.6e-73
 Identities = 139/178 (78%), Positives = 151/178 (84%), Frame = +2

Query:    26 MASSMISSPAVTTVNRAGAGMVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCMQVW 202
             MASSM+SS A    + A A MVAPF GLKS A FP TRK NNDITSI SNGGRV CMQVW
Sbjct:     1 MASSMLSS-ATMVASPAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVW 59

Query:   203 PPIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDG 382
             PPIGK KFETLSYLPDL D++LAKEV+YL+R  WIPC+EFELEHGFVYREH  SPGYYDG
Sbjct:    60 PPIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDG 119

Query:   383 RYWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPXF 559
             RYWTMWKLP+FGCTD++QVLKE++  K  YPN FIRIIGFDN RQVQCISFIAYKPP F
Sbjct:   120 RYWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKPPSF 178


 >gi|132074|sp|P10795|RBS1_ARATH  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            1A PRECURSOR (RUBISCO SMALL SUBUNIT 1A) >gi|68063|pir||RKMUA1
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain A1
            precursor - Arabidopsis thaliana
            Length = 180

Frame  2 hits (HSPs):   __________________________________________________
Annotated Domains:          _____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 180
                       0            50           100           150
__________________

Annotated Domains:
   DOMO                 DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 56..175
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 56..175
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 17..34
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 44..62
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 65..91
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 93..108
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 115..144
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 149..175
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      20..54
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      56..174
__________________


  Plus Strand HSPs:

 Score = 750 (264.0 bits), Expect = 2.0e-73, P = 2.0e-73
 Identities = 138/178 (77%), Positives = 151/178 (84%), Frame = +2

Query:    26 MASSMISSPAVTTVNRAGAGMVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCMQVW 202
             MASSM+SS A    + A A MVAPF GLKS A FP TRK NNDITSI SNGGRV CMQVW
Sbjct:     1 MASSMLSS-ATMVASPAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVW 59

Query:   203 PPIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDG 382
             PPIGK KFETLSYLPDL D++LAKEV+YL+R  WIPC+EFELEHGFVYREH  SPGYYDG
Sbjct:    60 PPIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDG 119

Query:   383 RYWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPXF 559
             RYWTMWKLP+FGCTD++QVLKE++  K  YPN FIRIIGFDN RQVQCISF+AYKPP F
Sbjct:   120 RYWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFVAYKPPSF 178


 >gi|585786|sp|P16032|RBS1_MESCR  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1
            PRECURSOR (RUBISCO SMALL SUBUNIT 1) >gi|479724|pir||S35247
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain -
            common ice plant >gi|304442|gb|AAA03693.1| (L10212) rubisco small
            subunit [Mesembryanthemum crystallinum] >gi|228311|prf||1802403A
            RuBisCO:SUBUNIT=small [Mesembryanthemum crystallinum]
            Length = 182

Frame  2 hits (HSPs):   __________________________________________________
Annotated Domains:           ____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |            |         | 182
                       0            50           100          150
__________________

Annotated Domains:
   DOMO                 DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 58..177
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 58..177
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 20..37
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 46..64
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 67..93
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 95..110
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 117..146
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 151..177
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      22..56
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      58..176
__________________


  Plus Strand HSPs:

 Score = 745 (262.3 bits), Expect = 6.8e-73, P = 6.8e-73
 Identities = 137/180 (76%), Positives = 149/180 (82%), Frame = +2

Query:    26 MASSMISSPAVTTVNR--AGAGMVAPFTGLKSMAGFPTRKTNNDITSIASNGGRVQCMQV 199
             MASSM+SS AV TVNR  A A MVAPF GLKS+A FP  K NNDITS+A+NGGRVQCMQV
Sbjct:     1 MASSMVSSAAVATVNRTPAQASMVAPFNGLKSVAAFPVTKKNNDITSVATNGGRVQCMQV 60

Query:   200 WPPIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYD 379
             WPP+GK KFETLSYLP L +  L KEV+YLL  GW+PCLEFE  HGFVYREH  +PGYYD
Sbjct:    61 WPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYD 120

Query:   380 GRYWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPXF 559
             GRYWTMWKLPMFGCTD SQV+ EL+ AK AYP  FIRIIGFDNVRQVQCISFIAYKP  +
Sbjct:   121 GRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKPASY 180


 >gi|132083|sp|P04714|RBS1_PETSP  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            SSU8 PRECURSOR (RUBISCO SMALL SUBUNIT SSU8) >gi|68086|pir||RKPJS8
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain (ssu8)
            precursor - garden petunia >gi|20491|emb|CAA27444.1| (X03820)
            ribulose 1,5-bisphosphate carboxylase [Petunia x hybrida]
            Length = 180

Frame  2 hits (HSPs):   __________________________________________________
Annotated Domains:           ____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 180
                       0            50           100           150
__________________

Annotated Domains:
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 58..177
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 19..36
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 46..64
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 67..93
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 95..110
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 117..146
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 151..177
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      21..56
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      58..176
   PROSITE              SOYBEAN_KUNITZ: Soybean trypsin inhibito 75..91
__________________


  Plus Strand HSPs:

 Score = 744 (261.9 bits), Expect = 8.7e-73, P = 8.7e-73
 Identities = 142/180 (78%), Positives = 151/180 (83%), Frame = +2

Query:    26 MASSMISSPAVTT-VNRAGAGMVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCMQV 199
             MASS+ISS AV T  N A A MVAPF GLKS   FP + K N DITSIASNGGRVQCMQV
Sbjct:     1 MASSVISSAAVATRTNVAQASMVAPFNGLKSAVSFPVSSKQNLDITSIASNGGRVQCMQV 60

Query:   200 WPPIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYD 379
             WPP GK K+ETLSYLPDL D QL KE+EYLL KGW+PCLEFE EHGFVYRE++ SP YYD
Sbjct:    61 WPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYD 120

Query:   380 GRYWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPXF 559
             GRYWTMWKLPMFGCTDA+QVL ELQ AK AYPN +IRIIGFDNVRQVQCISFIAYKPP F
Sbjct:   121 GRYWTMWKLPMFGCTDATQVLGELQEAKKAYPNAWIRIIGFDNVRQVQCISFIAYKPPGF 180


 >gi|3914601|sp|O65194|RBS_MEDSA  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            PRECURSOR (RUBISCO SMALL SUBUNIT) >gi|7436564|pir||T09336
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain -
            alfalfa >gi|3044116|gb|AAC13293.1| (AF056315)
            ribulose-1,5-bisphosphate carboxylase small subunit [Medicago
            sativa]
            Length = 180

Frame  2 hits (HSPs):   __________________________________________________
Annotated Domains:           ____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 180
                       0            50           100           150
__________________

Annotated Domains:
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 58..177
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 19..36
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 46..64
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 67..93
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 95..110
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 117..146
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 151..177
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      21..56
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      58..176
__________________


  Plus Strand HSPs:

 Score = 744 (261.9 bits), Expect = 8.7e-73, P = 8.7e-73
 Identities = 140/179 (78%), Positives = 155/179 (86%), Frame = +2

Query:    35 SMISSPAVTTVNRAG---AGMVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCMQVW 202
             ++ISS AVTTVNRA    A +VAPFTGLKS AGFP T+KTNNDITSIASNGGRV CMQVW
Sbjct:     2 ALISSAAVTTVNRASSAQANLVAPFTGLKSSAGFPVTKKTNNDITSIASNGGRVNCMQVW 61

Query:   203 PPIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDG 382
             PP+GK KFETLSYLP L + QLAKEVEYL+RKGWIPCLEFELE GFVYRE++RSPGYYDG
Sbjct:    62 PPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDG 121

Query:   383 RYWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPXF 559
             RYWTMW+LP+FG TD+SQVLKEL   K  YP+ FIRIIGFDNVRQVQCISFIA+ P  +
Sbjct:   122 RYWTMWRLPLFGATDSSQVLKELADCKAEYPDSFIRIIGFDNVRQVQCISFIAHTPKNY 180


 >gi|132071|sp|P10647|RBS0_SOLTU  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN C
            PRECURSOR (RUBISCO SMALL SUBUNIT C) >gi|68076|pir||RKPOSC
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) precursor small
            chain rbcS-c - potato >gi|169557|gb|AAA33838.1| (J03613) ribulose
            bisphosphate carboxylase (EC 4.1.1.39) [Solanum tuberosum]
            Length = 181

Frame  2 hits (HSPs):   __________________________________________________
Annotated Domains:          _____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 181
                       0            50           100           150
__________________

Annotated Domains:
   DOMO                 DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 59..178
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 59..178
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 19..36
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 47..65
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 68..94
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 96..111
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 118..147
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 152..178
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      21..57
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      59..177
__________________


  Plus Strand HSPs:

 Score = 741 (260.8 bits), Expect = 1.8e-72, P = 1.8e-72
 Identities = 140/181 (77%), Positives = 152/181 (83%), Frame = +2

Query:    26 MASSMISSPAVTT-VNRAGAGMVAPFTGLKSMAGFP-TRKTNN-DITSIASNGGRVQCMQ 196
             MASS++SS AV T  N A A MVAPFTGLKS A FP T+K NN DITS+ASNGGRV+CMQ
Sbjct:     1 MASSIVSSAAVATRSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQ 60

Query:   197 VWPPIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYY 376
             VWPPI   K+ETLSYLPDL D QL KEVEYLL+ GW+PCLEFE EHGFVYREHN SPGYY
Sbjct:    61 VWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYREHNSSPGYY 120

Query:   377 DGRYWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPX 556
             DGRYWTMWKLPMFGCTD +QVL E+Q AK AYP  +IRIIGFDNVRQVQCISFIAYKP  
Sbjct:   121 DGRYWTMWKLPMFGCTDGTQVLAEVQEAKNAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180

Query:   557 F 559
             +
Sbjct:   181 Y 181


 >gi|68064|pir||RKRPS  ribulose-bisphosphate carboxylase (EC 4.1.1.39) small
            chain precursor - rape >gi|17855|emb|CAA30290.1| (X07367) rubisco
            ssu precursor [Brassica napus]
            Length = 181

Frame  2 hits (HSPs):   _________________________________________________ 
Annotated Domains:      _______________                                   
                        __________________________________________________
Database sequence:     |             |             |             |        | 181
                       0            50           100           150
__________________

Annotated Domains:
   Entrez               domain: transit peptide (chloroplast)    1..55
__________________


  Plus Strand HSPs:

 Score = 740 (260.5 bits), Expect = 2.3e-72, P = 2.3e-72
 Identities = 138/178 (77%), Positives = 151/178 (84%), Frame = +2

Query:    26 MASSMISSPAVTTVNRAGAGMVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCMQVW 202
             MA SM+SS AV T + A A MVAPFTGLKS + FP TRK NNDITSI SNGGRV  MQVW
Sbjct:     1 MAYSMLSSAAVVT-SPAQATMVAPFTGLKSSSAFPVTRKANNDITSIVSNGGRVNSMQVW 59

Query:   203 PPIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDG 382
             PP+GK KFETLSYLPDL + +L KEV+YLLR  WIPC+EFELEHGFVYREH  +PGYYDG
Sbjct:    60 PPVGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDG 119

Query:   383 RYWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPXF 559
             RYWTMWKLP+FGCTD++QVLKE+Q  KT YPN FIRIIGFDN RQVQCISFIAYKPP F
Sbjct:   120 RYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKPPSF 178


 >gi|68052|pir||RKIXS  ribulose-bisphosphate carboxylase (EC 4.1.1.39) small
            chain precursor - common ice plant >gi|167268|gb|AAA33035.1|
            (M31640) ribulose-1-5-bisphosphate carboxylase [Mesembryanthemum
            crystallinum]
            Length = 182

Frame  2 hits (HSPs):   __________________________________________________
Annotated Domains:      ________________                                  
                        __________________________________________________
Database sequence:     |             |             |            |         | 182
                       0            50           100          150
__________________

Annotated Domains:
   Entrez               domain: transit peptide (chloroplast)    1..57
__________________


  Plus Strand HSPs:

 Score = 740 (260.5 bits), Expect = 2.3e-72, P = 2.3e-72
 Identities = 136/180 (75%), Positives = 148/180 (82%), Frame = +2

Query:    26 MASSMISSPAVTTVNR--AGAGMVAPFTGLKSMAGFPTRKTNNDITSIASNGGRVQCMQV 199
             MASSM+SS AV TVNR  A A MV PF GLKS+A FP  K NNDITS+A+NGGRVQCMQV
Sbjct:     1 MASSMVSSAAVATVNRTPAQASMVVPFNGLKSVAAFPVTKKNNDITSVATNGGRVQCMQV 60

Query:   200 WPPIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYD 379
             WPP+GK KFETLSYLP L +  L KEV+YLL  GW+PCLEFE  HGFVYREH  +PGYYD
Sbjct:    61 WPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYD 120

Query:   380 GRYWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPXF 559
             GRYWTMWKLPMFGCTD SQV+ EL+ AK AYP  FIRIIGFDNVRQVQCISFIAYKP  +
Sbjct:   121 GRYWTMWKLPMFGCTDPSQVVAELREAKKAYPEAFIRIIGFDNVRQVQCISFIAYKPASY 180


 >gi|295792|emb|CAA31948.1|  (X13611) ribulose bisphosphate carboxylase
            [Arabidopsis thaliana]
            Length = 182

Frame  2 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |             |             |            |         | 182
                       0            50           100          150

  Plus Strand HSPs:

 Score = 739 (260.1 bits), Expect = 3.0e-72, P = 3.0e-72
 Identities = 138/180 (76%), Positives = 151/180 (83%), Frame = +2

Query:    26 MASSMISSPAVTTVNRAGAGMVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCMQ-- 196
             MASSM+SS A    + A A MVAPF GLKS A FP TRK NNDITSI SNGGRV CMQ  
Sbjct:     1 MASSMLSS-ATMVASPAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQMQ 59

Query:   197 VWPPIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYY 376
             VWPPIGK KFETLSYLPDL D++LAKEV+YL+R  WIPC+EFELEHGFVYREH  SPGYY
Sbjct:    60 VWPPIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYY 119

Query:   377 DGRYWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPX 556
             DGRYWTMWKLP+FGCTD++QVLKE++  K  YPN FIRIIGFDN RQVQCISF+AYKPP 
Sbjct:   120 DGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFVAYKPPS 179

Query:   557 F 559
             F
Sbjct:   180 F 180


 >gi|464595|sp|Q02980|RBS_MALSP  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            PRECURSOR (RUBISCO SMALL SUBUNIT) >gi|478399|pir||JQ2241
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain
            precursor - apple tree >gi|19581|emb|CAA46475.1| (X65494) ribulose
            bisphosphate carboxylase [Malus sp.]
            Length = 183

Frame  2 hits (HSPs):   __________________________________________________
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |            |         | 183
                       0            50           100          150
__________________

Annotated Domains:
   DOMO                 DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 61..180
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 61..180
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 23..40
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 49..67
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 70..96
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 98..113
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 120..149
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 154..180
   PRODOM               PD027467: RBS(2)                         1..24
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      26..59
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      61..179
__________________


  Plus Strand HSPs:

 Score = 737 (259.4 bits), Expect = 4.8e-72, P = 4.8e-72
 Identities = 141/183 (77%), Positives = 152/183 (83%), Frame = +2

Query:    26 MASSMISSPAVTTVNR-----AGAGMVAPFTGLKSMAGFPTRKTNNDITSIASNGGRVQC 190
             MASSMISS  V TV+      A A MVAPFTGLKS +  P  + +NDITSIASNGGRVQC
Sbjct:     1 MASSMISSGTVATVSADRPAPAQARMVAPFTGLKSSSASPVTRKSNDITSIASNGGRVQC 60

Query:   191 MQVWPPIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPG 370
             MQVWPP+G  KFETLSYLP L    LAKEV+YLLRK W+PCLEFELEHGFVYRE++RSPG
Sbjct:    61 MQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPG 120

Query:   371 YYDGRYWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKP 550
             YYDGRYWTMWKLPMFGCTD+SQVLKEL+ AK AYP  FIRIIGFDNVRQVQCISFIAYKP
Sbjct:   121 YYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKP 180

Query:   551 PXF 559
               F
Sbjct:   181 AGF 183


 >gi|132097|sp|P00869|RBS2_PEA  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 3C
            PRECURSOR (RUBISCO SMALL SUBUNIT 3C) (PSS15) >gi|68082|pir||RKPMS5
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain 3C
            precursor - garden pea >gi|20857|emb|CAA27865.1| (X04334) ribulose
            1.5-bisphosphate carboxylase (RBC) [Pisum sativum]
            >gi|20859|emb|CAA25390.1| (X00806) ribulose bisphosphate
            carboxylase [Pisum sativum] >gi|225289|prf||1211236B
            carboxylase,ribulose bisphosphate [Arachis hypogaea]
            Length = 180

Frame  2 hits (HSPs):   __________________________________________________
Annotated Domains:           ____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 180
                       0            50           100           150
__________________

Annotated Domains:
   DOMO                 DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 58..177
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 58..177
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 20..37
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 46..64
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 67..93
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 95..110
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 117..146
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 151..177
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      24..56
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      58..176
__________________


  Plus Strand HSPs:

 Score = 737 (259.4 bits), Expect = 4.8e-72, P = 4.8e-72
 Identities = 139/179 (77%), Positives = 148/179 (82%), Frame = +2

Query:    32 SSMISSPAVTTVNRAGAGM---VAPFTGLKSMAGFPTRKTNNDITSIASNGGRVQCMQVW 202
             +SMISS AVTTV+RA  G    VAPF GLKSM GFP +K N DITSI SNGGRV+CMQVW
Sbjct:     2 ASMISSSAVTTVSRASRGQSAAVAPFGGLKSMTGFPVKKVNTDITSITSNGGRVKCMQVW 61

Query:   203 PPIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDG 382
             PPIGK KFETLSYLP L   QL KEVEYLLRKGW+PCLEFELE GFVYREHN+SPGYYDG
Sbjct:    62 PPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELEKGFVYREHNKSPGYYDG 121

Query:   383 RYWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPXF 559
             RYWTMWKLPMFG TDASQVLKEL     AYP  F+RIIGFDNVRQVQCISFIA+ P  +
Sbjct:   122 RYWTMWKLPMFGTTDASQVLKELDEVVAAYPQAFVRIIGFDNVRQVQCISFIAHTPESY 180


 >gi|132123|sp|P26576|RBSB_SOLTU  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            2B PRECURSOR (RUBISCO SMALL SUBUNIT 2B) >gi|68079|pir||RKPO2B
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) precursor small
            chain rbcS-2b - potato >gi|21567|emb|CAA49415.1| (X69761) ribulose
            bisphosphate carboxylase [Solanum tuberosum]
            Length = 180

Frame  2 hits (HSPs):   __________________________________________________
Annotated Domains:           ____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 180
                       0            50           100           150
__________________

Annotated Domains:
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 58..177
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 19..36
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 46..64
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 67..93
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 95..110
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 117..146
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 151..177
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      21..56
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      58..176
__________________


  Plus Strand HSPs:

 Score = 736 (259.1 bits), Expect = 6.2e-72, P = 6.2e-72
 Identities = 138/180 (76%), Positives = 152/180 (84%), Frame = +2

Query:    26 MASSMISSPAVTT-VNRAGAGMVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCMQV 199
             MASS++SS AV T  N A A MV PFTGLKS A FP +RK N DITSIASNGGRV+CMQV
Sbjct:     1 MASSIVSSAAVATRANGAQASMVGPFTGLKSTASFPVSRKQNLDITSIASNGGRVRCMQV 60

Query:   200 WPPIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYD 379
             WPPI   K+ETLSYLPDL D QL KEVEYLL+ GW+PCLEFE EHGFVYRE+N+SPGYYD
Sbjct:    61 WPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYD 120

Query:   380 GRYWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPXF 559
             GRYWTMWKLPMFGCTDA+QVL E++ AK AYP  +IRIIGFDNVRQVQCISFIAYKP  +
Sbjct:   121 GRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEGY 180


 >gi|132160|sp|P00866|RBS_TOBAC  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            PRECURSOR (RUBISCO SMALL SUBUNIT) (TSSU3-8) >gi|68056|pir||RKNTSP
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain
            precursor - common tobacco >gi|68068|pir||RKNTSS
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain
            precursor - wood tobacco >gi|19760|emb|CAA25862.1| (X01722) small
            subunit protein precursor [Nicotiana sylvestris]
            >gi|20024|emb|CAA26208.1| (X02353) small subunit ribulose
            1,5-bisphosphate carboxylase [Nicotiana tabacum]
            >gi|224384|prf||1103193A carboxylase,RBP [Nicotiana sylvestris]
            Length = 180

Frame  2 hits (HSPs):   __________________________________________________
Annotated Domains:           ____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 180
                       0            50           100           150
__________________

Annotated Domains:
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 58..177
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 19..36
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 46..64
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 67..93
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 95..110
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 117..146
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 151..177
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      21..56
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      58..176
   PROSITE              EF_HAND: EF-hand calcium-binding domain. 77..89
__________________


  Plus Strand HSPs:

 Score = 735 (258.7 bits), Expect = 7.9e-72, P = 7.9e-72
 Identities = 139/180 (77%), Positives = 152/180 (84%), Frame = +2

Query:    26 MASSMISSPAVTT-VNRAGAGMVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCMQV 199
             MASS++SS AV T  N A A MVAPFTGLKS A FP +RK N DITSIASNGGRVQCMQV
Sbjct:     1 MASSVLSSAAVATRSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQV 60

Query:   200 WPPIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYD 379
             WPPI K K+ETLSYLPDL   QL  EVEYLL+ GW+PCLEFE EHGFVYRE+N+SPGYYD
Sbjct:    61 WPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYD 120

Query:   380 GRYWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPXF 559
             GRYWTMWKLPMFGCTDA+QVL E++ AK AYP  +IRIIGFDNVRQVQCISFIAYKP  +
Sbjct:   121 GRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEGY 180


 >gi|132120|sp|P26575|RBSA_SOLTU  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            2A PRECURSOR (RUBISCO SMALL SUBUNIT 2A) >gi|68078|pir||RKPOS2
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) precursor small
            chain rbcS-2a - potato >gi|21565|emb|CAA49414.1| (X69760) ribulose
            bisphosphate carboxylase [Solanum tuberosum]
            Length = 180

Frame  2 hits (HSPs):   __________________________________________________
Annotated Domains:           ____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 180
                       0            50           100           150
__________________

Annotated Domains:
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 58..177
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 19..36
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 46..64
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 67..93
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 95..110
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 117..146
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 151..177
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      21..56
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      58..176
__________________


  Plus Strand HSPs:

 Score = 735 (258.7 bits), Expect = 7.9e-72, P = 7.9e-72
 Identities = 139/180 (77%), Positives = 153/180 (85%), Frame = +2

Query:    26 MASSMISSPAVTTV-NRAGAGMVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCMQV 199
             MASS++SS AV T  N A A MVAPFTGLKS A FP +RK N DITSIASNGGRV+CMQV
Sbjct:     1 MASSVMSSAAVATRGNGAQASMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVRCMQV 60

Query:   200 WPPIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYD 379
             WPPI   K+ETLSYLPDL D QL KEVEYLL+ GW+PCLEFE EHGFVYRE+N+SPGYYD
Sbjct:    61 WPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYD 120

Query:   380 GRYWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPXF 559
             GRYWTMWKLPMFGCTDA+QVL E++ AK AYP  +IRIIGFDNVRQVQCISFIAYKP  +
Sbjct:   121 GRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEGY 180


 >gi|132125|sp|P26577|RBSC_SOLTU  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            2C PRECURSOR (RUBISCO SMALL SUBUNIT 2C) >gi|68080|pir||RKPO2C
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) precursor small
            chain rbcS-2c - potato >gi|21569|emb|CAA49416.1| (X69762) ribulose
            bisphosphate carboxylase [Solanum tuberosum]
            Length = 180

Frame  2 hits (HSPs):   __________________________________________________
Annotated Domains:           ____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 180
                       0            50           100           150
__________________

Annotated Domains:
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 58..177
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 19..36
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 46..64
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 67..93
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 95..110
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 117..146
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 151..177
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      21..56
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      58..176
__________________


  Plus Strand HSPs:

 Score = 735 (258.7 bits), Expect = 7.9e-72, P = 7.9e-72
 Identities = 139/180 (77%), Positives = 153/180 (85%), Frame = +2

Query:    26 MASSMISSPAVTTV-NRAGAGMVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCMQV 199
             MASS++SS AV T  N A A MVAPFTGLKS A FP +RK N DITSIASNGGRV+CMQV
Sbjct:     1 MASSVMSSAAVATRGNGAQASMVAPFTGLKSTASFPVSRKQNLDITSIASNGGRVRCMQV 60

Query:   200 WPPIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYD 379
             WPPI   K+ETLSYLPDL D QL KEVEYLL+ GW+PCLEFE EHGFVYRE+N+SPGYYD
Sbjct:    61 WPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYD 120

Query:   380 GRYWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPXF 559
             GRYWTMWKLPMFGCTDA+QVL E++ AK AYP  +IRIIGFDNVRQVQCISFIAYKP  +
Sbjct:   121 GRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEGY 180


 >gi|417593|sp|P32764|RBS3_SOLTU  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 3
            PRECURSOR (RUBISCO SMALL SUBUNIT 3) >gi|322792|pir||S31498
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain -
            potato >gi|21571|emb|CAA49417.1| (X69763) ribulose bisphosphate
            carboxylase [Solanum tuberosum]
            Length = 181

Frame  2 hits (HSPs):   __________________________________________________
Annotated Domains:          _____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 181
                       0            50           100           150
__________________

Annotated Domains:
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 59..178
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 19..36
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 47..65
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 68..94
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 96..111
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 118..147
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 152..178
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      21..57
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      59..177
__________________


  Plus Strand HSPs:

 Score = 735 (258.7 bits), Expect = 7.9e-72, P = 7.9e-72
 Identities = 139/181 (76%), Positives = 154/181 (85%), Frame = +2

Query:    26 MASSMISSPAVTT-VNRAGAGMVAPFTGLKSMAGFP-TRKTNN-DITSIASNGGRVQCMQ 196
             MASS++SS AV T  N A A MVAPFTGLKS A FP T+K NN DITS+ASNGGRV+CMQ
Sbjct:     1 MASSIVSSAAVATRSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQ 60

Query:   197 VWPPIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYY 376
             VWPPI   K+ETLSYLPDL D QL KEVEYLL+ GW+PCLEFE EHGFVYRE+++SPGYY
Sbjct:    61 VWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYY 120

Query:   377 DGRYWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPX 556
             DGRYWTMWKLPMFGCTDA+QVL E+Q AK AYP  +IRIIGFDNVRQVQCISFIAYKP  
Sbjct:   121 DGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180

Query:   557 F 559
             +
Sbjct:   181 Y 181


 >gi|3914592|sp|Q96542|RBS_BETVE  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            PRECURSOR (RUBISCO SMALL SUBUNIT) >gi|1536889|emb|CAA69102.1|
            (Y07779) ribulose-bisphosphate carboxylase [Betula pendula]
            Length = 182

Frame  2 hits (HSPs):   __________________________________________________
Annotated Domains:           ____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |            |         | 182
                       0            50           100          150
__________________

Annotated Domains:
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 60..179
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 21..38
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 48..66
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 69..95
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 97..112
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 119..148
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 153..179
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      23..58
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      60..178
__________________


  Plus Strand HSPs:

 Score = 735 (258.7 bits), Expect = 7.9e-72, P = 7.9e-72
 Identities = 142/180 (78%), Positives = 151/180 (83%), Frame = +2

Query:    26 MASSMISSPAVTTVNRAG---AGMVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCM 193
             MA SMISS  V  V+RA    + MVAPFT LKS + FP T+KTNNDITSIASNGGRVQCM
Sbjct:     1 MACSMISSATVAAVSRASPAQSSMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCM 60

Query:   194 QVWPPIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGY 373
             QVWPP+G  KFETLSYLP L   QLAKEV+YLLRK  IPCLEFELEHGFVYREHNRSPGY
Sbjct:    61 QVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGY 120

Query:   374 YDGRYWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPP 553
             YDGRYWTMWKLPMFGC D+SQVLKEL+  K AYP+ FIRIIGFDN RQVQ ISFIAYKPP
Sbjct:   121 YDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKPP 180


 >gi|132106|sp|P07689|RBS3_PEA  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 3A
            PRECURSOR (RUBISCO SMALL SUBUNIT 3A) >gi|68083|pir||RKPMS3
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain 3A
            precursor - garden pea >gi|20855|emb|CAA27864.1| (X04333) ribulose
            bisphosphate carboxylase [Pisum sativum] >gi|225288|prf||1211236A
            carboxylase,ribulose bisphosphate [Arachis hypogaea]
            Length = 180

Frame  2 hits (HSPs):   __________________________________________________
Annotated Domains:           ____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 180
                       0            50           100           150
__________________

Annotated Domains:
   DOMO                 DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 58..177
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 58..177
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 20..37
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 46..64
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 67..93
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 95..110
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 117..146
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 151..177
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      24..56
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      58..176
__________________


  Plus Strand HSPs:

 Score = 732 (257.7 bits), Expect = 1.6e-71, P = 1.6e-71
 Identities = 138/179 (77%), Positives = 148/179 (82%), Frame = +2

Query:    32 SSMISSPAVTTVNRAG---AGMVAPFTGLKSMAGFPTRKTNNDITSIASNGGRVQCMQVW 202
             +SMISS AVTTV+RA    +  VAPF GLKSM GFP +K N DITSI SNGGRV+CMQVW
Sbjct:     2 ASMISSSAVTTVSRASTVQSAAVAPFGGLKSMTGFPVKKVNTDITSITSNGGRVKCMQVW 61

Query:   203 PPIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDG 382
             PPIGK KFETLSYLP L   QL KEVEYLLRKGW+PCLEFELE GFVYREHN+SPGYYDG
Sbjct:    62 PPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELEKGFVYREHNKSPGYYDG 121

Query:   383 RYWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPXF 559
             RYWTMWKLPMFG TDASQVLKEL     AYP  F+RIIGFDNVRQVQCISFIA+ P  +
Sbjct:   122 RYWTMWKLPMFGTTDASQVLKELDEVVAAYPQAFVRIIGFDNVRQVQCISFIAHTPESY 180


 >gi|132153|sp|P24007|RBS_PYRPY  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            PRECURSOR (RUBISCO SMALL SUBUNIT) >gi|218021|dbj|BAA00450.1|
            (D00572) RuBisCO small subunit [Pyrus pyrifolia]
            Length = 183

Frame  2 hits (HSPs):   __________________________________________________
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |            |         | 183
                       0            50           100          150
__________________

Annotated Domains:
   DOMO                 DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 61..180
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 61..180
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 23..40
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 49..67
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 70..96
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 98..113
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 120..149
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 154..180
   PRODOM               PD027467: RBS(2)                         1..24
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      26..59
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      61..179
__________________


  Plus Strand HSPs:

 Score = 731 (257.3 bits), Expect = 2.1e-71, P = 2.1e-71
 Identities = 140/183 (76%), Positives = 151/183 (82%), Frame = +2

Query:    26 MASSMISSPAVTTVNR-----AGAGMVAPFTGLKSMAGFPTRKTNNDITSIASNGGRVQC 190
             MASSMISS  V TV+      A A MVAPF GLKS + FP  + +NDITSIASNGGRVQC
Sbjct:     1 MASSMISSGTVATVSADRPAPAQARMVAPFNGLKSSSAFPVTRKSNDITSIASNGGRVQC 60

Query:   191 MQVWPPIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPG 370
             MQVWPP+G  KFETLSYLP L    LAKEV+YLLRK W+PCLEFELE GFVYRE++RSPG
Sbjct:    61 MQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPG 120

Query:   371 YYDGRYWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKP 550
             YYDGRYWTMWKLPMFGCTD+SQVLKEL+ AK AYP  FIRIIGFDNVRQVQCISFIAYKP
Sbjct:   121 YYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKP 180

Query:   551 PXF 559
               F
Sbjct:   181 AGF 183


 >gi|3914585|sp|O22077|RBS_FAGCR  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            PRECURSOR (RUBISCO SMALL SUBUNIT) >gi|2588890|dbj|BAA23214.1|
            (AB006080) small subunit of ribulose-1,5-bisphosphate
            carboxylase/oxygenase [Fagus crenata]
            Length = 182

Frame  2 hits (HSPs):   __________________________________________________
Annotated Domains:           ____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |            |         | 182
                       0            50           100          150
__________________

Annotated Domains:
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 60..179
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 21..38
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 48..66
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 69..95
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 97..112
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 119..148
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 153..179
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      24..58
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      60..178
__________________


  Plus Strand HSPs:

 Score = 730 (257.0 bits), Expect = 2.7e-71, P = 2.7e-71
 Identities = 140/180 (77%), Positives = 150/180 (83%), Frame = +2

Query:    26 MASSMISSPAVTTVNRAG---AGMVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCM 193
             MASSMISS  V TV+RA    A MVAPFTGLKS A FP TRK+NNDITS+ASNGGRVQCM
Sbjct:     1 MASSMISSATVATVSRATPAQATMVAPFTGLKSTAAFPATRKSNNDITSLASNGGRVQCM 60

Query:   194 QVWPPIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGY 373
             +VWPP+G  KFETLSYLP L    LAK++EYL+ KGWIPCLEFELEH FVYRE+NRSPGY
Sbjct:    61 KVWPPLGLQKFETLSYLPPLSIESLAKQIEYLILKGWIPCLEFELEHPFVYRENNRSPGY 120

Query:   374 YDGRYWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPP 553
             YDGRYW MWKLPMFGCTDA+QVL ELQ A   YP   IRIIGFDN RQVQCISFIAYKPP
Sbjct:   121 YDGRYWVMWKLPMFGCTDATQVLAELQEASKTYPTSHIRIIGFDNKRQVQCISFIAYKPP 180


 >gi|170504|gb|AAA34192.1|  (M15236) ribulose-1,5-bisphosphate carboxylase, small
            subunit precursor [Lycopersicon esculentum]
            Length = 180

Frame  2 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |             |             |             |        | 180
                       0            50           100           150

  Plus Strand HSPs:

 Score = 729 (256.6 bits), Expect = 3.4e-71, P = 3.4e-71
 Identities = 138/180 (76%), Positives = 150/180 (83%), Frame = +2

Query:    26 MASSMISSPAVTT-VNRAGAGMVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCMQV 199
             MASS+ISS AV T  N   A MVAPFTGLKS A FP T+K N DITSIASNGGRV CMQV
Sbjct:     1 MASSVISSAAVATRSNVTQASMVAPFTGLKSSATFPVTKKQNLDITSIASNGGRVSCMQV 60

Query:   200 WPPIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYD 379
             WPPI   K+ETLSYLPDL D QL  EVEYLL+ GW+PCLEFE EHGFVYRE+N+SPGYYD
Sbjct:    61 WPPINMKKYETLSYLPDLSDEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYD 120

Query:   380 GRYWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPXF 559
             GRYWTMWKLPMFGCTDA+QVL E+Q AK AYP  ++RIIGFDNVRQVQCISFIAYKP  +
Sbjct:   121 GRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEGY 180


 >gi|132095|sp|P07179|RBS2_LYCES  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            2A PRECURSOR (RUBISCO SMALL SUBUNIT 2A) (LESS 5)
            >gi|68074|pir||RKTOS2 ribulose-bisphosphate carboxylase (EC
            4.1.1.39) small chain 2 precursor - tomato
            >gi|170498|gb|AAA34189.1| (M13543) ribulose-1,5-bisphophate
            carboxylase/ oxygenase small subunit (EC 4.1.1.39) [Lycopersicon
            esculentum] >gi|4456641|emb|CAA29401.2| (X05983) ribulose
            1,5-bisphosphate carboxylase/oxygenase [Lycopersicon esculentum]
            Length = 180

Frame  2 hits (HSPs):   __________________________________________________
Annotated Domains:           ____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 180
                       0            50           100           150
__________________

Annotated Domains:
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 58..177
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 19..36
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 46..64
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 67..93
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 95..110
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 117..146
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 151..177
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      21..56
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      58..176
   PROSITE              EF_HAND: EF-hand calcium-binding domain. 77..89
__________________


  Plus Strand HSPs:

 Score = 728 (256.3 bits), Expect = 4.3e-71, P = 4.3e-71
 Identities = 137/180 (76%), Positives = 150/180 (83%), Frame = +2

Query:    26 MASSMISSPAVTT-VNRAGAGMVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCMQV 199
             MASS+ISS AV T  N   A MVAPFTGLKS A FP T+K N DITSIASNGGRV CMQV
Sbjct:     1 MASSVISSAAVATRSNVTQASMVAPFTGLKSSATFPVTKKQNLDITSIASNGGRVSCMQV 60

Query:   200 WPPIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYD 379
             WPPI   K+ETLSYLPDL D QL  E+EYLL+ GW+PCLEFE EHGFVYRE+N+SPGYYD
Sbjct:    61 WPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYD 120

Query:   380 GRYWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPXF 559
             GRYWTMWKLPMFGCTDA+QVL E+Q AK AYP  ++RIIGFDNVRQVQCISFIAYKP  +
Sbjct:   121 GRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEGY 180


 >gi|1352821|sp|P31333|RBS_GOSHI  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            PRECURSOR (RUBISCO SMALL SUBUNIT) >gi|279581|pir||RKCNSU
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain
            precursor - upland cotton >gi|450505|emb|CAA38026.1| (X54091)
            ribulose bisphosphate carboxylase [Gossypium hirsutum]
            Length = 182

Frame  2 hits (HSPs):   __________________________________________________
Annotated Domains:           ____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |            |         | 182
                       0            50           100          150
__________________

Annotated Domains:
   DOMO                 DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 60..179
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 60..179
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 21..38
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 48..66
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 69..95
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 97..112
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 119..148
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 153..179
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      23..58
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      60..178
__________________


  Plus Strand HSPs:

 Score = 728 (256.3 bits), Expect = 4.3e-71, P = 4.3e-71
 Identities = 138/182 (75%), Positives = 152/182 (83%), Frame = +2

Query:    26 MASSMISSPAVTTVN---RAGAGMVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCM 193
             MASSMISS  + TVN    A A MVAPFTGLKS + FP TRK NNDITS+ASNGGRVQCM
Sbjct:     1 MASSMISSATIATVNCSSPAQANMVAPFTGLKSASAFPVTRKANNDITSLASNGGRVQCM 60

Query:   194 QVWPPIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGY 373
             QVWPP+GK KFETLSYLPDL   QLAKEV+YLLR  WIPCLEFELE GFV+R+++  P Y
Sbjct:    61 QVWPPLGKKKFETLSYLPDLTPVQLAKEVDYLLRSKWIPCLEFELEEGFVHRKYSSLPTY 120

Query:   374 YDGRYWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPP 553
             YDGRYWTMWKLPMFGCTD++QVL+EL+  K  YPN FIRIIGFDNVRQVQCISFIAYKP 
Sbjct:   121 YDGRYWTMWKLPMFGCTDSAQVLEELENCKKEYPNAFIRIIGFDNVRQVQCISFIAYKPK 180

Query:   554 XF 559
              +
Sbjct:   181 GY 182


 >gi|3914606|sp|Q41351|RBS_STELP  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            PRECURSOR (RUBISCO SMALL SUBUNIT) >gi|556418|gb|AAA69018.1|
            (L26605) ribulose 1,5-bisphosphate carboxylase small subunit
            [Stellaria longipes]
            Length = 180

Frame  2 hits (HSPs):   __________________________________________________
Annotated Domains:           ____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 180
                       0            50           100           150
__________________

Annotated Domains:
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 58..177
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 19..36
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 46..64
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 67..93
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 95..110
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 117..146
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 151..177
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      21..56
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      58..176
   PROSITE              EF_HAND: EF-hand calcium-binding domain. 77..89
__________________


  Plus Strand HSPs:

 Score = 728 (256.3 bits), Expect = 4.3e-71, P = 4.3e-71
 Identities = 138/180 (76%), Positives = 149/180 (82%), Frame = +2

Query:    26 MASSMISSPAVTT-VNRAGAGMVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCMQV 199
             MASS++SS AV T  N A A MVAPFTGLKS A FP +RKTN DITSIASNGGRV+CMQV
Sbjct:     1 MASSIMSSAAVATRSNGAQASMVAPFTGLKSNASFPVSRKTNLDITSIASNGGRVRCMQV 60

Query:   200 WPPIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYD 379
             WPPI   K+ETLSYLPDL   QL  E+EYLL+ GW+PCLEFE EHGFVYREH  SPGYYD
Sbjct:    61 WPPINMKKYETLSYLPDLSSEQLLSEIEYLLKNGWVPCLEFETEHGFVYREHTSSPGYYD 120

Query:   380 GRYWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPXF 559
             GRYWTMWKLPMFGCTDA+QV  E+Q AK AYP+  IRIIGFDNVRQVQCISFIAYKP  F
Sbjct:   121 GRYWTMWKLPMFGCTDATQVAAEVQEAKKAYPDAHIRIIGFDNVRQVQCISFIAYKPEAF 180


 >gi|3914586|sp|O65349|RBS_CAPAN  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            PRECURSOR (RUBISCO SMALL SUBUNIT) >gi|3152715|gb|AAC17126.1|
            (AF065615) ribulose 1,5-bisphosphate carboxylase/oxygenase small
            subunit [Capsicum annuum]
            Length = 187

Frame  2 hits (HSPs):   ________________________________________________  
Annotated Domains:          ____________________________________________  
                        __________________________________________________
Database sequence:     |             |            |            |          | 187
                       0            50          100          150
__________________

Annotated Domains:
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 58..177
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 19..36
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 46..64
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 67..93
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 95..110
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 117..146
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 151..177
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      21..56
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      58..176
__________________


  Plus Strand HSPs:

 Score = 728 (256.3 bits), Expect = 4.3e-71, P = 4.3e-71
 Identities = 136/177 (76%), Positives = 150/177 (84%), Frame = +2

Query:    26 MASSMISSPAVTT-VNRAGAGMVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCMQV 199
             MASS++S+  V T  N A A M+A F GLKS A FP TRK + DITSIASNGGRV+CM V
Sbjct:     1 MASSVMSTATVATGANAAQASMIASFNGLKSAASFPVTRKQDLDITSIASNGGRVECMLV 60

Query:   200 WPPIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYD 379
             WPPI K K+ETLSYLPDL D QL KE+EYLL+KGW+PCLEFE EHGFVYREH+RSPGYYD
Sbjct:    61 WPPINKKKYETLSYLPDLSDEQLLKEIEYLLQKGWVPCLEFETEHGFVYREHHRSPGYYD 120

Query:   380 GRYWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKP 550
             GRYWTMWKLPMFGCTDA+QVL E+Q AK AYP  +IRIIGFDNVRQVQCISFIAYKP
Sbjct:   121 GRYWTMWKLPMFGCTDATQVLNEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177


 >gi|132112|sp|P05349|RBS4_LYCES  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            3B PRECURSOR (RUBISCO SMALL SUBUNIT 3B) >gi|68071|pir||RKTO3B
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain 3B
            precursor - tomato >gi|19336|emb|CAA29403.1| (X05985) ribulose
            1,5-bisphosphate carboxylase/oxyenase [Lycopersicon esculentum]
            >gi|218318|dbj|BAA01888.1| (D11112) ribulose 1,5-bisphosphate
            carboxylase/oxygenase small subunit [Lycopersicon esculentum]
            Length = 180

Frame  2 hits (HSPs):   __________________________________________________
Annotated Domains:           ____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 180
                       0            50           100           150
__________________

Annotated Domains:
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 58..177
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 19..36
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 46..64
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 67..93
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 95..110
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 117..146
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 151..177
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      21..56
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      58..176
   PROSITE              EF_HAND: EF-hand calcium-binding domain. 77..89
__________________


  Plus Strand HSPs:

 Score = 727 (255.9 bits), Expect = 5.5e-71, P = 5.5e-71
 Identities = 136/180 (75%), Positives = 151/180 (83%), Frame = +2

Query:    26 MASSMISSPAVTTV-NRAGAGMVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCMQV 199
             MASS++SS AV T  N A A MVAPFTGLKS A FP +RK N DITSIASNGGRV CMQV
Sbjct:     1 MASSIVSSAAVATRGNGAQASMVAPFTGLKSTASFPVSRKQNLDITSIASNGGRVSCMQV 60

Query:   200 WPPIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYD 379
             WPPI   K+ETLSYLPDL D QL  E+EYLL+ GW+PCLEFE EHGFVYRE+++SPGYYD
Sbjct:    61 WPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYD 120

Query:   380 GRYWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPXF 559
             GRYWTMWKLPMFGCTDA+QVL E+Q AK AYP  ++RIIGFDNVRQVQCISFIAYKP  +
Sbjct:   121 GRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEGY 180


 >gi|132104|sp|P07180|RBS3_LYCES  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            3A/3C PRECURSOR (RUBISCO SMALL SUBUNIT 3A/3C) >gi|68072|pir||RKTO3C
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain 3A
            precursor - tomato >gi|19334|emb|CAA29402.1| (X05984) ribulose
            1,5-bisphosphate carboxylase/oxygenase [Lycopersicon esculentum]
            >gi|19338|emb|CAA29404.1| (X05986) ribulose 1,5-bisphosphate
            carboxylase/oxygenase [Lycopersicon esculentum]
            >gi|170500|gb|AAA34190.1| (M13544) ribulose-1,5-bisphophate
            carboxylase/ oxygenase small subunit [Lycopersicon esculentum]
            Length = 180

Frame  2 hits (HSPs):   __________________________________________________
Annotated Domains:           ____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 180
                       0            50           100           150
__________________

Annotated Domains:
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 58..177
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 19..36
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 46..64
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 67..93
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 95..110
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 117..146
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 151..177
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      21..56
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      58..176
   PROSITE              EF_HAND: EF-hand calcium-binding domain. 77..89
__________________


  Plus Strand HSPs:

 Score = 725 (255.2 bits), Expect = 9.0e-71, P = 9.0e-71
 Identities = 136/180 (75%), Positives = 151/180 (83%), Frame = +2

Query:    26 MASSMISSPAVTTV-NRAGAGMVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCMQV 199
             MASS++SS AV T  N A A MVAPFTGLKS A FP +RK N DITSIASNGGRV CMQV
Sbjct:     1 MASSVMSSAAVATRGNGAQASMVAPFTGLKSTASFPVSRKQNLDITSIASNGGRVSCMQV 60

Query:   200 WPPIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYD 379
             WPPI   K+ETLSYLPDL D QL  E+EYLL+ GW+PCLEFE EHGFVYRE+++SPGYYD
Sbjct:    61 WPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYD 120

Query:   380 GRYWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPXF 559
             GRYWTMWKLPMFGCTDA+QVL E+Q AK AYP  ++RIIGFDNVRQVQCISFIAYKP  +
Sbjct:   121 GRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEGY 180


 >gi|132118|sp|P26573|RBS8_NICPL  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            8B PRECURSOR (RUBISCO SMALL SUBUNIT 8B) >gi|68055|pir||RKNTSV
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain
            precursor - curled-leaved tobacco >gi|19706|emb|CAA31994.1|
            (X13711) ribulose bisphosphate carboxylase [Nicotiana
            plumbaginifolia] >gi|170318|gb|AAA34110.1| (M36685) ribulose
            bisphosphate carboxylase [Nicotiana plumbaginifolia]
            Length = 180

Frame  2 hits (HSPs):   __________________________________________________
Annotated Domains:           ____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 180
                       0            50           100           150
__________________

Annotated Domains:
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 58..177
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 19..36
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 46..64
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 67..93
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 95..110
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 117..146
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 151..177
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      21..56
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      58..176
   PROSITE              EF_HAND: EF-hand calcium-binding domain. 77..89
__________________


  Plus Strand HSPs:

 Score = 725 (255.2 bits), Expect = 9.0e-71, P = 9.0e-71
 Identities = 136/180 (75%), Positives = 150/180 (83%), Frame = +2

Query:    26 MASSMISSPAVTT-VNRAGAGMVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCMQV 199
             MASS++SS AV T  N A A MVAPFTGLKS A FP +RK N DITSIASNGGRVQCMQV
Sbjct:     1 MASSVLSSAAVATRSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQV 60

Query:   200 WPPIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYD 379
             WPPI K K+ETLSYLPDL   QL  E+EYLL+ GW+PCLEFE E GFVYREH+ SPGYYD
Sbjct:    61 WPPINKKKYETLSYLPDLSQEQLLSEIEYLLKSGWVPCLEFETERGFVYREHHHSPGYYD 120

Query:   380 GRYWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPXF 559
             GRYWTMWKLPMFGCTDA+QVL E++ AK AYP  ++RIIGFDNVRQVQCISFIAYKP  +
Sbjct:   121 GRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEGY 180


 >gi|132085|sp|P26574|RBS1_SOLTU  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1
            PRECURSOR (RUBISCO SMALL SUBUNIT 1) >gi|68077|pir||RKPOS1
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) precursor small
            chain rbcS-1 - potato >gi|21563|emb|CAA49413.1| (X69759) ribulose
            bisphosphate carboxylase [Solanum tuberosum]
            Length = 181

Frame  2 hits (HSPs):   __________________________________________________
Annotated Domains:           ____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 181
                       0            50           100           150
__________________

Annotated Domains:
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 59..178
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 20..37
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 47..65
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 68..94
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 96..111
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 118..147
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 152..178
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      22..57
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      59..177
   PROSITE              SOYBEAN_KUNITZ: Soybean trypsin inhibito 76..92
__________________


  Plus Strand HSPs:

 Score = 721 (253.8 bits), Expect = 2.4e-70, P = 2.4e-70
 Identities = 137/181 (75%), Positives = 154/181 (85%), Frame = +2

Query:    26 MASSMISSPAVTT---VNRAGAGMVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCM 193
             MASS+ISS AV T   V +AG+ M+APFTGLKS A FP +RK N DITSIASNGGRV+CM
Sbjct:     1 MASSVISSAAVATRTNVTQAGS-MIAPFTGLKSAATFPVSRKQNLDITSIASNGGRVRCM 59

Query:   194 QVWPPIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGY 373
             QVWPPI   K+ETLSYLPDL D QL KEVEYLL+ GW+PCLEFE EHGFVYRE+++SPGY
Sbjct:    60 QVWPPINMKKYETLSYLPDLTDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGY 119

Query:   374 YDGRYWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPP 553
             YDGRYWTMWKLPMFGCTDA+QVL E+Q  K +YP  +IRIIGFDNVRQVQCISFIAYKP 
Sbjct:   120 YDGRYWTMWKLPMFGCTDATQVLAEVQECKKSYPQAWIRIIGFDNVRQVQCISFIAYKPE 179

Query:   554 XF 559
              +
Sbjct:   180 GY 181


 >gi|132079|sp|P08706|RBS1_LYCES  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1
            PRECURSOR (RUBISCO SMALL SUBUNIT 1) (LESS17) >gi|68075|pir||RKTOS1
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain 1
            precursor - tomato >gi|170496|gb|AAA34188.1| (M13542)
            ribulose-1,5-bisphophate carboxylase/ oxygenase small subunit
            [Lycopersicon esculentum] >gi|295814|emb|CAA29400.1| (X05982)
            ribulose 1,5-bisphosphate carboxylase/oxygenase [Lycopersicon
            esculentum]
            Length = 181

Frame  2 hits (HSPs):   __________________________________________________
Annotated Domains:          _____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 181
                       0            50           100           150
__________________

Annotated Domains:
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 59..178
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 19..36
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 47..65
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 68..94
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 96..111
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 118..147
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 152..178
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      21..57
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      59..177
   PROSITE              EF_HAND: EF-hand calcium-binding domain. 78..90
__________________


  Plus Strand HSPs:

 Score = 721 (253.8 bits), Expect = 2.4e-70, P = 2.4e-70
 Identities = 136/181 (75%), Positives = 150/181 (82%), Frame = +2

Query:    26 MASSMISSPAVTT-VNRAGAGMVAPFTGLKSMAGFP-TRKTNN-DITSIASNGGRVQCMQ 196
             MASS++SS A  T  N A A MVAPFTGLKS A FP T+K NN DITS+ASNGGRV+CMQ
Sbjct:     1 MASSIVSSAAAATRSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQ 60

Query:   197 VWPPIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYY 376
             VWPPI   K+ETLSYLPDL D QL  E+EYLL+ GW+PCLEFE E GFVYRE+N SPGYY
Sbjct:    61 VWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETERGFVYRENNSSPGYY 120

Query:   377 DGRYWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPX 556
             DGRYWTMWKLPMFGCTDA+QVL E+Q AK AYP  ++RIIGFDNVRQVQCISFIAYKP  
Sbjct:   121 DGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 180

Query:   557 F 559
             F
Sbjct:   181 F 181


 >gi|132080|sp|P22433|RBS1_NICSY  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            S41 PRECURSOR (RUBISCO SMALL SUBUNIT S41) >gi|68070|pir||RKNT41
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain SS41
            precursor - wood tobacco >gi|295823|emb|CAA37516.1| (X53426) NySS41
            [Nicotiana sylvestris]
            Length = 181

Frame  2 hits (HSPs):    _________________________________________________
Annotated Domains:           ____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 181
                       0            50           100           150
__________________

Annotated Domains:
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 59..178
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 20..37
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 47..65
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 68..94
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 96..111
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 118..147
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 152..178
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      22..57
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      59..177
__________________


  Plus Strand HSPs:

 Score = 718 (252.7 bits), Expect = 5.0e-70, P = 5.0e-70
 Identities = 133/176 (75%), Positives = 148/176 (84%), Frame = +2

Query:    38 MISSPAVTT-VNRAGAGMVAPFTGLKSMAGFP-TRKTNNDITSIASNGGRVQCMQVWPPI 211
             M S+ AV T  N A A M+APFTGLKS   FP +RK N DITSIASNGGRVQCMQVWPPI
Sbjct:     6 MSSAAAVATGTNAAQASMIAPFTGLKSATSFPVSRKQNLDITSIASNGGRVQCMQVWPPI 65

Query:   212 GKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYYDGRYW 391
              K K+ETLSYLPDL + QL +EVEYLL+ GW+PCLEFE EHGFVYRE+N+SPGYYDGRYW
Sbjct:    66 NKKKYETLSYLPDLSEEQLLREVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYW 125

Query:   392 TMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPXF 559
             TMWKLPMFGCTDA+QVL E++ AK AYP  +IRIIGFDNVRQVQCISFIAYKP  +
Sbjct:   126 TMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEGY 181


 >gi|170502|gb|AAA34191.1|  (M15235) ribulose-1,5-bisphosphate carboxylase, small
            subunit precursor [Lycopersicon esculentum]
            Length = 181

Frame  2 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |             |             |             |        | 181
                       0            50           100           150

  Plus Strand HSPs:

 Score = 717 (252.4 bits), Expect = 6.3e-70, P = 6.3e-70
 Identities = 135/181 (74%), Positives = 149/181 (82%), Frame = +2

Query:    26 MASSMISSPAVTT-VNRAGAGMVAPFTGLKSMAGFP-TRKTNN-DITSIASNGGRVQCMQ 196
             MASS++SS A  T  N A A MVAPFTGLKS A FP T+K NN DITS+ASNGGRV+CMQ
Sbjct:     1 MASSIVSSAAAATRSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQ 60

Query:   197 VWPPIGKXKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPGYY 376
             VWPPI   K+ETLSYLPD  D QL  E+EYLL+ GW+PCLEFE E GFVYRE+N SPGYY
Sbjct:    61 VWPPINMKKYETLSYLPDFSDEQLLSEIEYLLKNGWVPCLEFETERGFVYRENNSSPGYY 120

Query:   377 DGRYWTMWKLPMFGCTDASQVLKELQXAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPX 556
             DGRYWTMWKLPMFGCTDA+QVL E+Q AK AYP  ++RIIGFDNVRQVQCISFIAYKP  
Sbjct:   121 DGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 180

Query:   557 F 559
             F
Sbjct:   181 F 181


WARNING:  HSPs involving 313 database sequences were not reported due to the
          limiting value of parameter B = 50.


Parameters:
  filter=none
  matrix=BLOSUM62
  V=50
  B=50
  E=10
  gi
  H=1
  sort_by_pvalue
  echofilter

  ctxfactor=5.99

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   Std.    0   BLOSUM62                                 0.318   0.135   0.401  
   +3      0   BLOSUM62        0.318   0.135   0.401    0.332   0.140   0.477  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +2      0   BLOSUM62        0.318   0.135   0.401    0.336   0.148   0.505  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +1      0   BLOSUM62        0.318   0.135   0.401    0.347   0.155   0.606  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -1      0   BLOSUM62        0.318   0.135   0.401    0.357   0.156   0.615  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -2      0   BLOSUM62        0.318   0.135   0.401    0.331   0.144   0.485  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -3      0   BLOSUM62        0.318   0.135   0.401    0.349   0.153   0.538  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +3      0      300       276       10.  78 3  12 22  0.098   36
                                                    33  0.12    39
   +2      0      300       274       10.  78 3  12 22  0.097   36
                                                    33  0.12    39
   +1      0      300       276       10.  78 3  12 22  0.098   36
                                                    33  0.12    39
   -1      0      300       275       10.  78 3  12 22  0.097   36
                                                    33  0.12    39
   -2      0      300       275       10.  78 3  12 22  0.097   36
                                                    33  0.12    39
   -3      0      300       276       10.  78 3  12 22  0.098   36
                                                    33  0.12    39


Statistics:

  Database:  /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
    Title:  nr
    Release date:  unknown
    Posted date:  8:50 PM CDT May 27, 2000
    Format:  BLAST
  # of letters in database:  158,518,215
  # of sequences in database:  505,245
  # of database sequences satisfying E:  363
  No. of states in DFA:  600 (59 KB)
  Total size of DFA:  311 KB (320 KB)
  Time to generate neighborhood:  0.04u 0.00s 0.04t  Elapsed: 00:00:00
  No. of threads or processors used:  4
  Search cpu time:  381.90u 1.19s 383.09t  Elapsed: 00:03:19
  Total cpu time:  382.04u 1.24s 383.28t  Elapsed: 00:03:19
  Start:  Thu Oct  5 18:57:28 2000   End:  Thu Oct  5 19:00:47 2000

WARNINGS ISSUED:  2


Annotated Domains Database:   March 14, 2000 

Release Date:  March 14, 2000