R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
WARNING: Descriptions of 34 database sequences were not reported due to the
limiting value of parameter V = 50.
>gi|1710587|sp|P50346|RLA0_SOYBN 60S ACIDIC RIBOSOMAL PROTEIN P0
>gi|7440740|pir||T07106 acidic ribosomal protein P0 - soybean
>gi|1196897|gb|AAB63814.1| (L46848) acidic ribosomal protein P0
[Glycine max]
Length = 320
Frame 1 hits (HSPs): ___________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | | 320
0 50 100 150 200 250 300
__________________
Annotated Domains:
DOMO DM00904: RATACIDICRIBOSOMALPROTEINP0 1..318
PFAM Ribosomal_L10: Ribosomal protein L10 6..110
PFAM 60s_ribosomal: 60s Acidic ribosomal prot 218..320
PRODOM PD001309: RLA0(28) RL10(20) 6..126
PRODOM PD002352: RLA0(28) O04204(1) O74864(1) 129..261
__________________
Plus Strand HSPs:
Score = 589 (207.3 bits), Expect = 2.9e-56, P = 2.9e-56
Identities = 117/117 (100%), Positives = 117/117 (100%), Frame = +1
Query: 163 MAPKQTKAEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNT 342
MAPKQTKAEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNT
Sbjct: 1 MAPKQTKAEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNT 60
Query: 343 MMKRSVRMHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVG 513
MMKRSVRMHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVG
Sbjct: 61 MMKRSVRMHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVG 117
>gi|1710585|sp|P50345|RLA0_LUPLU 60S ACIDIC RIBOSOMAL PROTEIN P0
>gi|1143507|emb|CAA63786.1| (X93587) P0 ribosomal protein [Lupinus
luteus]
Length = 322
Frame 1 hits (HSPs): ___________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | | 322
0 50 100 150 200 250 300
__________________
Annotated Domains:
PFAM Ribosomal_L10: Ribosomal protein L10 6..110
PFAM 60s_ribosomal: 60s Acidic ribosomal prot 236..321
PRODOM PD001309: RLA0(28) RL10(20) 6..126
PRODOM PD002352: RLA0(28) O04204(1) O74864(1) 129..261
__________________
Plus Strand HSPs:
Score = 510 (179.5 bits), Expect = 6.8e-48, P = 6.8e-48
Identities = 101/117 (86%), Positives = 108/117 (92%), Frame = +1
Query: 163 MAPKQTKAEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNT 342
MAPK TKAEKKI YD KLC L++EY QILVVN+DNVGS QLQNIR+GLRGDSVVLMGKNT
Sbjct: 1 MAPKATKAEKKIVYDGKLCQLLDEYTQILVVNADNVGSKQLQNIRQGLRGDSVVLMGKNT 60
Query: 343 MMKRSVRMHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVG 513
MMKRSVR+HAEKTGN A+LNLIPLL+GNVGLIFTKG LKEVSEEVAKYKVGAPA VG
Sbjct: 61 MMKRSVRIHAEKTGNQAFLNLIPLLIGNVGLIFTKGYLKEVSEEVAKYKVGAPACVG 117
>gi|12229886|sp|O04204|RL0A_ARATH 60S ACIDIC RIBOSOMAL PROTEIN P0-A
>gi|2088654|gb|AAB95286.1| (AF002109) 60S acidic ribosomal protein
P0 [Arabidopsis thaliana]
Length = 317
Frame 1 hits (HSPs): ___________________
__________________________________________________
Database sequence: | | | | | | | | 317
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 500 (176.0 bits), Expect = 7.8e-47, P = 7.8e-47
Identities = 99/117 (84%), Positives = 107/117 (91%), Frame = +1
Query: 163 MAPKQTKAEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNT 342
MA K TKAEKKI YD+KLC L+ EY QILVV +DNVGS QLQNIRKGLRGDSVVLMGKNT
Sbjct: 1 MAVKATKAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNT 60
Query: 343 MMKRSVRMHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVG 513
MMKRSVR+HA+KTGN A+L+L+PLL GNVGLIFTKGDLKEVSEEVAKYKVGAPARVG
Sbjct: 61 MMKRSVRIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVG 117
>gi|6984134|gb|AAF34767.1|AF227622_1 (AF227622) 60S acidic ribosomal protein PO
[Euphorbia esula]
Length = 317
Frame 1 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | | | | | 317
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 496 (174.6 bits), Expect = 2.1e-46, P = 2.1e-46
Identities = 97/112 (86%), Positives = 106/112 (94%), Frame = +1
Query: 178 TKAEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMMKRS 357
+KAEKKIAYDAKLC L+++Y QILVV +DNVGS QLQNIRKGLRGDSVVLMGKNTMMKRS
Sbjct: 3 SKAEKKIAYDAKLCQLLDDYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRS 62
Query: 358 VRMHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVG 513
VR+H+EKTGN A+LNL+PLL GNVGLIFTKGDLKEVSEEVAKYKVGAPARVG
Sbjct: 63 VRVHSEKTGNTAFLNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVG 114
>gi|6478915|gb|AAF14020.1|AC011436_4 (AC011436) putative 60S acidic ribosomal
protein P0 [Arabidopsis thaliana]
Length = 320
Frame 1 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | | | | | 320
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 491 (172.8 bits), Expect = 7.0e-46, P = 7.0e-46
Identities = 98/114 (85%), Positives = 104/114 (91%), Frame = +1
Query: 172 KQTKAEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMMK 351
K TKAEKKIAYD KLC L++EY QILVV +DNVGS QLQNIRKGLRGDSVVLMGKNTMMK
Sbjct: 3 KATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMK 62
Query: 352 RSVRMHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVG 513
RSVR+H+E TGN A LNL+PLL GNVGLIFTKGDLKEVSEEVAKYKVGAPARVG
Sbjct: 63 RSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVG 116
>gi|12644551|sp|P57691|RL0C_ARATH 60S ACIDIC RIBOSOMAL PROTEIN P0-C
>gi|12321877|gb|AAG50973.1|AC073395_15 (AC073395) 60S acidic
ribosomal protein, putative; 58619-59992 [Arabidopsis thaliana]
Length = 323
Frame 1 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | | | | | 323
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 487 (171.4 bits), Expect = 1.9e-45, P = 1.9e-45
Identities = 97/114 (85%), Positives = 104/114 (91%), Frame = +1
Query: 172 KQTKAEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMMK 351
K TKAEKKIAYD KLC L++EY QILVV +DNVGS QLQNIRKGLRGDSVVLMGKNTMMK
Sbjct: 3 KATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMK 62
Query: 352 RSVRMHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVG 513
RSVR+H+E +GN A LNL+PLL GNVGLIFTKGDLKEVSEEVAKYKVGAPARVG
Sbjct: 63 RSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVG 116
>gi|730580|sp|P41095|RLA0_ORYSA 60S ACIDIC RIBOSOMAL PROTEIN P0
>gi|7440742|pir||T04309 acidic ribosomal protein P0 - rice
>gi|455401|dbj|BAA04668.1| (D21130) acidic ribosomal protein P0
[Oryza sativa]
Length = 319
Frame 1 hits (HSPs): ___________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | | 319
0 50 100 150 200 250 300
__________________
Annotated Domains:
DOMO DM00904: RATACIDICRIBOSOMALPROTEINP0 1..317
PFAM Ribosomal_L10: Ribosomal protein L10 6..110
PFAM 60s_ribosomal: 60s Acidic ribosomal prot 215..319
PRODOM PD001309: RLA0(28) RL10(20) 6..126
PRODOM PD002352: RLA0(28) O04204(1) O74864(1) 129..261
PRODOM PD034530: RLA0(2) 263..283
__________________
Plus Strand HSPs:
Score = 460 (161.9 bits), Expect = 1.3e-42, P = 1.3e-42
Identities = 86/117 (73%), Positives = 104/117 (88%), Frame = +1
Query: 163 MAPKQTKAEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNT 342
MA K+TKAEKK+AYD KLC L++EY ++L+ +DNVGSNQLQ IRKGLRGDS+VLMGKNT
Sbjct: 1 MAIKRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNT 60
Query: 343 MMKRSVRMHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVG 513
+++R +++HA+ TGN +L L+PLLVGNVGLIFTKGDLKEV EEVAKYKVGAPARVG
Sbjct: 61 LIRRCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVG 117
>gi|6094102|sp|O24573|RLA0_MAIZE 60S ACIDIC RIBOSOMAL PROTEIN P0
>gi|7440741|pir||T03944 acidic ribosomal protein P0 - maize
>gi|1550814|emb|CAA69256.1| (Y07959) 60S acidic ribosomal protein
P0 [Zea mays]
Length = 319
Frame 1 hits (HSPs): ___________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | | 319
0 50 100 150 200 250 300
__________________
Annotated Domains:
PFAM Ribosomal_L10: Ribosomal protein L10 6..110
PFAM 60s_ribosomal: 60s Acidic ribosomal prot 218..318
PRODOM PD001309: RLA0(28) RL10(20) 5..125
PRODOM PD002352: RLA0(28) O04204(1) O74864(1) 128..260
PRODOM PD034530: RLA0(2) 262..282
__________________
Plus Strand HSPs:
Score = 440 (154.9 bits), Expect = 1.8e-40, P = 1.8e-40
Identities = 85/117 (72%), Positives = 104/117 (88%), Frame = +1
Query: 163 MAPKQTKAEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNT 342
MA K+TKAEKKIAYD KLC L++EY ++L+ +DNVGS QLQ+IR+GLRGDSVVLMGKNT
Sbjct: 1 MAIKRTKAEKKIAYDKKLCSLLDEYTKVLIALADNVGSKQLQDIRRGLRGDSVVLMGKNT 60
Query: 343 MMKRSVRMHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVG 513
+++R ++++AEKTGN+ + L+ LLVGNVGLIFTKGDLKEV EEVAKYKVGAPARVG
Sbjct: 61 LIRRCIKVYAEKTGNHTFDPLMDLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVG 117
>gi|266946|sp|P29764|RLA0_CHERU 60S ACIDIC RIBOSOMAL PROTEIN P0 (LIGHT-INDUCED
34 KD PROTEIN) >gi|71143|pir||R5UBP0 acidic ribosomal protein P0 -
red goosefoot >gi|18141|emb|CAA33276.1| (X15206) 34kD light-induced
protein [Chenopodium rubrum]
Length = 321
Frame 1 hits (HSPs): ___________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | | 321
0 50 100 150 200 250 300
__________________
Annotated Domains:
DOMO DM00904: RATACIDICRIBOSOMALPROTEINP0 1..318
PFAM Ribosomal_L10: Ribosomal protein L10 6..110
PFAM 60s_ribosomal: 60s Acidic ribosomal prot 224..320
PRODOM PD001309: RLA0(28) RL10(20) 6..126
PRODOM PD002352: RLA0(28) O04204(1) O74864(1) 129..242
PRODOM PD094998: RLA0_CHERU 244..283
__________________
Plus Strand HSPs:
Score = 430 (151.4 bits), Expect = 2.0e-39, P = 2.0e-39
Identities = 83/117 (70%), Positives = 97/117 (82%), Frame = +1
Query: 163 MAPKQTKAEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNT 342
MA K TKAEKKIAYD KLC L++EY Q+L+ ++DNVGSNQLQ IR GLRGDS+VLMGKNT
Sbjct: 1 MAVKPTKAEKKIAYDQKLCQLLDEYSQVLIASADNVGSNQLQAIRIGLRGDSIVLMGKNT 60
Query: 343 MMKRSVRMHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVG 513
MMKRS+R+HAE TGN N+ L + NVGLIFTKGDL +V EE++KYKVGAPAR G
Sbjct: 61 MMKRSIRLHAENTGNENLRNVEQLFLPNVGLIFTKGDLNQVREEISKYKVGAPARFG 117
>gi|6598977|emb|CAB63647.1| (Y18444) P0 protein [Ceratitis capitata]
Length = 317
Frame 1 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | | | | | 317
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 287 (101.0 bits), Expect = 2.9e-24, P = 2.9e-24
Identities = 60/115 (52%), Positives = 81/115 (70%), Frame = +1
Query: 172 KQTKAEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMMK 351
++ KA K Y K+ +L +EY + +V +DNVGS Q+QNIR LRG VVLMGKNTMM+
Sbjct: 3 RENKAAWKAQYFLKVVELFDEYPKCFIVGADNVGSKQMQNIRTSLRGLGVVLMGKNTMMR 62
Query: 352 RSVRMHAEKTGNNAYLN-LIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGS 516
+++R H E NNA L L+P + GNVG +FTKGDL EV +++ + KV APAR G+
Sbjct: 63 KAIRGHLE---NNAQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARAGA 115
>gi|113987|sp|P19889|RLA0_DROME 60S ACIDIC RIBOSOMAL PROTEIN P0
(DEOXYRIBONUCLEASE (APURINIC OR APYRIMIDINIC))
(APURINIC-APYRIMIDINIC ENDONUCLEASE) >gi|71140|pir||R5FFP0 acidic
ribosomal protein P0 - fruit fly (Drosophila melanogaster)
>gi|576817|gb|AAA53372.1| (M25772) DNA repair protein [Drosophila
melanogaster] >gi|7296522|gb|AAF51807.1| (AE003596) RpP0 gene
product [Drosophila melanogaster]
Length = 317
Frame 1 hits (HSPs): __________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | | 317
0 50 100 150 200 250 300
__________________
Annotated Domains:
DOMO DM00904: RATACIDICRIBOSOMALPROTEINP0 1..315
Entrez phosphorylation site: (BY CK1) (POTENTIA 304
PFAM Ribosomal_L10: Ribosomal protein L10 5..107
PFAM 60s_ribosomal: 60s Acidic ribosomal prot 211..317
PRODOM PD001309: RLA0(28) RL10(20) 10..125
PRODOM PD002352: RLA0(28) O04204(1) O74864(1) 127..258
PRODOM PD095001: RLA0_DROME 260..316
__________________
Plus Strand HSPs:
Score = 277 (97.5 bits), Expect = 3.3e-23, P = 3.3e-23
Identities = 58/115 (50%), Positives = 81/115 (70%), Frame = +1
Query: 172 KQTKAEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMMK 351
++ KA K Y K+ +L +E+ + +V +DNVGS Q+QNIR LRG +VVLMGKNTMM+
Sbjct: 3 RENKAAWKAQYFIKVVELFDEFPKCFIVGADNVGSKQMQNIRTSLRGLAVVLMGKNTMMR 62
Query: 352 RSVRMHAEKTGNNAYLN-LIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGS 516
+++R H E NN L L+P + GNVG +FTKGDL EV +++ + KV APAR G+
Sbjct: 63 KAIRGHLE---NNPQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARPGA 115
>gi|6911249|gb|AAF31449.1|AF220939_1 (AF220939) 60S acidic ribosomal protein P0
[Sarcophaga crassipalpis]
Length = 316
Frame 1 hits (HSPs): ___________________
__________________________________________________
Database sequence: | | | | | | | | 316
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 276 (97.2 bits), Expect = 4.2e-23, P = 4.2e-23
Identities = 59/115 (51%), Positives = 79/115 (68%), Frame = +1
Query: 172 KQTKAEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMMK 351
++ KA K Y K+ +L EY + VV +DNVGS Q+Q IR LRG VVLMGKNTMM+
Sbjct: 3 RENKAAWKAQYFIKVVELFNEYPKCFVVGADNVGSRQMQTIRTSLRGMGVVLMGKNTMMR 62
Query: 352 RSVRMHAEKTGNNAYLN-LIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGS 516
+++R H E+ NA L L+P + GNVG +FTKGDL EV +++ + KV APAR G+
Sbjct: 63 KAIRGHLEQ---NAQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARAGA 115
>gi|9957151|gb|AAG09233.1| (AF176302) brain acidic ribosomal phosphoprotein P0
[Rana sylvatica]
Length = 315
Frame 1 hits (HSPs): ___________________
__________________________________________________
Database sequence: | | | | | | | | 315
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 262 (92.2 bits), Expect = 1.3e-21, P = 1.3e-21
Identities = 54/116 (46%), Positives = 77/116 (66%), Frame = +1
Query: 169 PKQTKAEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMM 348
P++ +A K Y K+ L+++Y + +V +DNVGS Q+Q IR LRG +VVLMGKNTMM
Sbjct: 2 PREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMM 61
Query: 349 KRSVRMHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGS 516
++++R H E N+A L+P + GNVG +FTK DL EV + + KV A AR G+
Sbjct: 62 RKAIRGHLEN--NSALEKLLPHIKGNVGFVFTKEDLAEVRDMLLANKVPASARAGA 115
>gi|1350778|sp|P47826|RLA0_CHICK 60S ACIDIC RIBOSOMAL PROTEIN P0 (L10E)
>gi|2119118|pir||I50151 acidic ribosomal phosphoprotein - chicken
>gi|453474|gb|AAC38020.1| (L28704) acidic ribosomal phosphoprotein
[Gallus gallus]
Length = 316
Frame 1 hits (HSPs): ___________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | | 316
0 50 100 150 200 250 300
__________________
Annotated Domains:
PFAM Ribosomal_L10: Ribosomal protein L10 5..107
PFAM 60s_ribosomal: 60s Acidic ribosomal prot 206..316
PRODOM PD001309: RLA0(28) RL10(20) 10..125
PRODOM PD002352: RLA0(28) O04204(1) O74864(1) 127..258
PRODOM PD094996: RLA0_CHICK 260..284
__________________
Plus Strand HSPs:
Score = 258 (90.8 bits), Expect = 3.4e-21, P = 3.4e-21
Identities = 54/116 (46%), Positives = 76/116 (65%), Frame = +1
Query: 169 PKQTKAEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMM 348
P++ +A K Y K+ L+++Y + VV +DNVGS Q+Q IR LRG +VVLMGKNTMM
Sbjct: 2 PREDRATWKSNYFMKIIQLLDDYPKCFVVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMM 61
Query: 349 KRSVRMHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGS 516
++++R H E N A L+P + GNVG +FTK DL E+ + + KV A AR G+
Sbjct: 62 RKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGA 115
>gi|6671569 ref|NP_031501.1| acidic ribosomal phosphoprotein PO [Mus musculus]
>gi|133043|sp|P14869|RLA0_MOUSE 60S ACIDIC RIBOSOMAL PROTEIN P0
(L10E) >gi|71139|pir||R5MS10 acidic ribosomal protein P0 - mouse
>gi|50026|emb|CAA33338.1| (X15267) PO protein [Mus musculus]
Length = 317
Frame 1 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | | | | | 317
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 257 (90.5 bits), Expect = 4.4e-21, P = 4.4e-21
Identities = 53/116 (45%), Positives = 76/116 (65%), Frame = +1
Query: 169 PKQTKAEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMM 348
P++ +A K Y K+ L+++Y + +V +DNVGS Q+Q IR LRG +VVLMGKNTMM
Sbjct: 2 PREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMM 61
Query: 349 KRSVRMHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGS 516
++++R H E N A L+P + GNVG +FTK DL E+ + + KV A AR G+
Sbjct: 62 RKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGA 115
>gi|71138|pir||R5RT10 acidic ribosomal protein P0, cytosolic [similarity] - rat
>gi|57708|emb|CAA33199.1| (X15096) ribosomal phosphoprotein P0 (AA
1-316) [Rattus rattus] >gi|228176|prf||1718187A ribosomal protein
P0 [Rattus rattus]
Length = 316
Frame 1 hits (HSPs): ___________________
__________________________________________________
Database sequence: | | | | | | | | 316
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 257 (90.5 bits), Expect = 4.4e-21, P = 4.4e-21
Identities = 53/116 (45%), Positives = 76/116 (65%), Frame = +1
Query: 169 PKQTKAEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMM 348
P++ +A K Y K+ L+++Y + +V +DNVGS Q+Q IR LRG +VVLMGKNTMM
Sbjct: 2 PREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMM 61
Query: 349 KRSVRMHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGS 516
++++R H E N A L+P + GNVG +FTK DL E+ + + KV A AR G+
Sbjct: 62 RKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGA 115
>gi|4506667 ref|NP_000993.1| ribosomal protein, large, P0; P0 [Homo sapiens]
>gi|11436630 ref|XP_007036.1| ribosomal protein, large, P0 [Homo
sapiens] >gi|133041|sp|P05388|RLA0_HUMAN 60S ACIDIC RIBOSOMAL
PROTEIN P0 (L10E) >gi|71137|pir||R5HUP0 acidic ribosomal protein
P0, cytosolic [validated] - human >gi|190232|gb|AAA36470.1|
(M17885) acidic ribosomal phosphoprotein (P0) [Homo sapiens]
>gi|2935618|gb|AAC05176.1| (AC004263) 60S ACIDIC RIBOSOMAL PROTEIN;
match to P05388 (PID:g133041) [Homo sapiens]
>gi|12652677|gb|AAH00087.1|AAH00087 (BC000087) ribosomal protein,
large, P0 [Homo sapiens] >gi|12653155|gb|AAH00345.1|AAH00345
(BC000345) ribosomal protein, large, P0 [Homo sapiens]
>gi|12653917|gb|AAH00752.1|AAH00752 (BC000752) ribosomal protein,
large, P0 [Homo sapiens]
Length = 317
Frame 1 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | | | | | 317
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 257 (90.5 bits), Expect = 4.4e-21, P = 4.4e-21
Identities = 53/116 (45%), Positives = 76/116 (65%), Frame = +1
Query: 169 PKQTKAEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMM 348
P++ +A K Y K+ L+++Y + +V +DNVGS Q+Q IR LRG +VVLMGKNTMM
Sbjct: 2 PREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMM 61
Query: 349 KRSVRMHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGS 516
++++R H E N A L+P + GNVG +FTK DL E+ + + KV A AR G+
Sbjct: 62 RKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGA 115
>gi|11693176 ref|NP_071797.1| acidic ribosomal protein P0 [Rattus norvegicus]
>gi|730581|sp|P19945|RLA0_RAT 60S ACIDIC RIBOSOMAL PROTEIN P0
(L10E) >gi|450370|emb|CAA82647.1| (Z29530) acidic ribosomal protein
P0 [Rattus norvegicus]
Length = 317
Frame 1 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | | | | | 317
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 257 (90.5 bits), Expect = 4.4e-21, P = 4.4e-21
Identities = 53/116 (45%), Positives = 76/116 (65%), Frame = +1
Query: 169 PKQTKAEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMM 348
P++ +A K Y K+ L+++Y + +V +DNVGS Q+Q IR LRG +VVLMGKNTMM
Sbjct: 2 PREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMM 61
Query: 349 KRSVRMHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGS 516
++++R H E N A L+P + GNVG +FTK DL E+ + + KV A AR G+
Sbjct: 62 RKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGA 115
>gi|12654583|gb|AAH01127.1|AAH01127 (BC001127) ribosomal protein, large, P0
[Homo sapiens]
Length = 317
Frame 1 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | | | | | 317
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 257 (90.5 bits), Expect = 4.4e-21, P = 4.4e-21
Identities = 53/116 (45%), Positives = 76/116 (65%), Frame = +1
Query: 169 PKQTKAEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMM 348
P++ +A K Y K+ L+++Y + +V +DNVGS Q+Q IR LRG +VVLMGKNTMM
Sbjct: 2 PREDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMM 61
Query: 349 KRSVRMHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGS 516
++++R H E N A L+P + GNVG +FTK DL E+ + + KV A AR G+
Sbjct: 62 RKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGA 115
>gi|5880681|gb|AAD54776.1|AF134852_1 (AF134852) acidic ribosomal phophoprotein
P0 [Danio rerio]
Length = 319
Frame 1 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | | | | | 319
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 252 (88.7 bits), Expect = 1.5e-20, P = 1.5e-20
Identities = 53/116 (45%), Positives = 76/116 (65%), Frame = +1
Query: 169 PKQTKAEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMM 348
P++ +A K Y K+ L++++ + +V +DNVGS Q+Q IR LRG +VVLMGKNTMM
Sbjct: 2 PREDRATWKSNYFLKIIQLLDDFPKCFIVGADNVGSKQMQTIRLSLRGKAVVLMGKNTMM 61
Query: 349 KRSVRMHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGS 516
++++R H E N A L+P + GNVG +FTK DL EV + + KV A AR G+
Sbjct: 62 RKAIRGHLEN--NPALERLLPHIRGNVGFVFTKEDLTEVRDLLLANKVPAAARAGA 115
>gi|3041728|sp|Q95140|RLA0_BOVIN 60S ACIDIC RIBOSOMAL PROTEIN P0 (L10E)
Length = 309
Frame 1 hits (HSPs): _________________
Annotated Domains: ________________ ___________________
__________________________________________________
Database sequence: | | | | | | | | 309
0 50 100 150 200 250 300
__________________
Annotated Domains:
PFAM Ribosomal_L10: Ribosomal protein L10 1..98
PFAM 60s_ribosomal: 60s Acidic ribosomal prot 197..309
__________________
Plus Strand HSPs:
Score = 245 (86.2 bits), Expect = 8.2e-20, P = 8.2e-20
Identities = 51/108 (47%), Positives = 71/108 (65%), Frame = +1
Query: 193 KIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMMKRSVRMHA 372
K Y K+ L+++Y + +V +DNVGS Q+Q IR LRG +VVLMGKNTMM++++R H
Sbjct: 1 KSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHL 60
Query: 373 EKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGS 516
E N A L+P + GNVG +FTK DL E+ + + KV A AR G+
Sbjct: 61 EN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGA 106
>gi|2500216|sp|Q93572|RLA0_CAEEL 60S ACIDIC RIBOSOMAL PROTEIN P0
>gi|7499824|pir||T21351 hypothetical protein F25H2.10 -
Caenorhabditis elegans >gi|3876334|emb|CAB02098.1| (Z79754)
contains similarity to Pfam domain: PF00428 (60s Acidic ribosomal
protein), Score=86.0, E-value=1.6e-26, N=1; PF00466 (Ribosomal
protein L10), Score=174.7, E-value=5e-49, N=1~cDNA EST EMBL:M89073
comes from this gene~cDNA EST EMBL:M89341 comes>
Length = 312
Frame 1 hits (HSPs): ___________________
Annotated Domains: ___________________ ______________________________
__________________________________________________
Database sequence: | | | | | | | | 312
0 50 100 150 200 250 300
__________________
Annotated Domains:
PFAM Ribosomal_L10: Ribosomal protein L10 4..106
PFAM 60s_ribosomal: 60s Acidic ribosomal prot 210..311
PRODOM PD001309: RLA0(28) RL10(20) 9..119
PRODOM PD002352: RLA0(28) O04204(1) O74864(1) 126..257
__________________
Plus Strand HSPs:
Score = 243 (85.5 bits), Expect = 1.3e-19, P = 1.3e-19
Identities = 49/115 (42%), Positives = 77/115 (66%), Frame = +1
Query: 172 KQTKAEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMMK 351
++ ++ K Y KL +L EEY + L+V DNVGS Q+Q IR+ +RG + +LMGKNTM++
Sbjct: 3 REDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTMIR 62
Query: 352 RSVRMHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGS 516
+++R H K N + L+P +V NVG +FTK DL E+ ++ + + GAPA+ G+
Sbjct: 63 KALRGHLGK--NPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGA 115
>gi|2293577|gb|AAB65436.1| (AF013214) acidic ribosomal phosphoprotein PO [Bos
taurus]
Length = 302
Frame 1 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | | | || 302
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 236 (83.1 bits), Expect = 7.3e-19, P = 7.3e-19
Identities = 48/101 (47%), Positives = 68/101 (67%), Frame = +1
Query: 214 LCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMMKRSVRMHAEKTGNNA 393
+ L+++Y + +V +DNVGS Q+Q IR LRG +VVLMGKNTMM++++R H E N A
Sbjct: 1 IIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NPA 58
Query: 394 YLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGS 516
L+P + GNVG +FTK DL E+ + + KV A AR G+
Sbjct: 59 LEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGA 99
>gi|6323371 ref|NP_013444.1| 60S ribosomal protein P0 (A0) (L10E); Rpp0p
[Saccharomyces cerevisiae] >gi|2144770|pir||R5BY0E acidic ribosomal
protein P0.e, cytosolic - yeast (Saccharomyces cerevisiae)
>gi|171806|gb|AAA34729.1| (M37326) ribosomal protein L10e
[Saccharomyces cerevisiae] >gi|171808|gb|AAA34730.1| (M26506) L10e
protein [Saccharomyces cerevisiae] >gi|171809|gb|AAA34731.1|
(M26506) L10e protein [Saccharomyces cerevisiae]
>gi|609387|gb|AAB67258.1| (U19028) Rpl10ep [Saccharomyces
cerevisiae]
Length = 312
Frame 1 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | | | | | 312
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 235 (82.7 bits), Expect = 9.4e-19, P = 9.4e-19
Identities = 49/110 (44%), Positives = 68/110 (61%), Frame = +1
Query: 187 EKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMMKRSVRM 366
EKK Y AKL + +EEY + VV DNV S Q+ +RK LRG +VVLMGKNTM++R++R
Sbjct: 6 EKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRG 65
Query: 367 HAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGS 516
+ + L+P + GNVG +FT L E+ + +V APAR G+
Sbjct: 66 FLSDLPD--FEKLLPFVKGNVGFVFTNEPLTEIKNVIVSNRVAAPARAGA 113
>gi|133046|sp|P05317|RLA0_YEAST 60S ACIDIC RIBOSOMAL PROTEIN P0 (L10E)
>gi|4371|emb|CAA30029.1| (X06959) ribosomal protein A0 (AA 1-312)
[Saccharomyces cerevisiae] >gi|218396|dbj|BAA00415.1| (D00529)
acidic ribosomal protein A0 [Saccharomyces cerevisiae]
Length = 312
Frame 1 hits (HSPs): __________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | | 312
0 50 100 150 200 250 300
__________________
Annotated Domains:
DOMO DM00904: RATACIDICRIBOSOMALPROTEINP0 1..310
Entrez phosphorylation site: (BY CK1) (POTENTIA 302
PFAM Ribosomal_L10: Ribosomal protein L10 3..105
PFAM 60s_ribosomal: 60s Acidic ribosomal prot 202..312
PRODOM PD001309: RLA0(28) RL10(20) 5..118
PRODOM PD002352: RLA0(28) O04204(1) O74864(1) 125..256
PROSITE LEUCINE_ZIPPER: Leucine zipper pattern. 225..246
__________________
Plus Strand HSPs:
Score = 227 (79.9 bits), Expect = 6.6e-18, P = 6.6e-18
Identities = 48/110 (43%), Positives = 67/110 (60%), Frame = +1
Query: 187 EKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMMKRSVRM 366
EKK Y AKL + +EEY + VV DNV S Q+ +RK LRG +VVLMGKNTM++R++R
Sbjct: 6 EKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRG 65
Query: 367 HAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGS 516
+ + L+P + G VG +FT L E+ + +V APAR G+
Sbjct: 66 FLSDLPD--FEKLLPFVKGYVGFVFTNEPLTEIKNVIVSNRVAAPARAGA 113
>gi|7492342|pir||T41157 probable 60s acidic ribosomal protein p0 - fission
yeast (Schizosaccharomyces pombe) >gi|3766376|emb|CAA21428.1|
(AL031907) putative 60s acidic ribosomal protein p0
[Schizosaccharomyces pombe]
Length = 312
Frame 1 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | | | | | 312
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 218 (76.7 bits), Expect = 5.9e-17, P = 5.9e-17
Identities = 47/107 (43%), Positives = 64/107 (59%), Frame = +1
Query: 187 EKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMMKRSVRM 366
E K Y KL L E+Y + VVN DNV S Q+ +RK LRG + ++MGKNTM++R++R
Sbjct: 6 ESKAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRG 65
Query: 367 HAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPAR 507
L+P++ GNVG +FT DLKEV E + + APAR
Sbjct: 66 IINDMPELE--RLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPAR 110
>gi|6226694|sp|Q94660|RLA0_PLAF8 60S ACIDIC RIBOSOMAL PROTEIN P0
>gi|4191737|gb|AAD10140.1| (U56663) acidic ribosomal phosphoprotein
PO [Plasmodium falciparum]
Length = 316
Frame 1 hits (HSPs): ___________________
Annotated Domains: _________________________________________
__________________________________________________
Database sequence: | | | | | | | | 316
0 50 100 150 200 250 300
__________________
Annotated Domains:
PFAM Ribosomal_L10: Ribosomal protein L10 5..107
PRODOM PD001309: RLA0(28) RL10(20) 4..124
PRODOM PD002352: RLA0(28) O04204(1) O74864(1) 127..258
__________________
Plus Strand HSPs:
Score = 215 (75.7 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 45/114 (39%), Positives = 73/114 (64%), Frame = +1
Query: 172 KQTKAEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMMK 351
K +K +KK Y KL L+++Y +IL+V+ DNVGSNQ+ ++RK LRG + +LMGKNT ++
Sbjct: 3 KLSKQQKKQMYIEKLSSLIQQYSKILIVHVDNVGSNQMASVRKSLRGKATILMGKNTRIR 62
Query: 352 RSVRMHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGA-PARVG 513
+++ + + L+PL+ N+G +F K DL E+ + K + PAR+G
Sbjct: 63 TALKKNLQAVPQIE--KLLPLVKLNMGFVFCKDDLSEIRNIILDNKSSSHPARLG 115
>gi|2500215|sp|Q29214|RLA0_PIG 60S ACIDIC RIBOSOMAL PROTEIN P0 (L10E)
Length = 93
Frame 1 hits (HSPs): _________________________________________________
Annotated Domains: _______________________________________________
__________________________________________________
Database sequence: | | | | | | 93
0 20 40 60 80
__________________
Annotated Domains:
PFAM Ribosomal_L10: Ribosomal protein L10 5..92
__________________
Plus Strand HSPs:
Score = 214 (75.3 bits), Expect = 1.6e-16, P = 1.6e-16
Identities = 43/93 (46%), Positives = 62/93 (66%), Frame = +1
Query: 169 PKQTKAEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMM 348
P++ +A K Y K+ L+++Y + +V +DNVGS Q+Q IR LRG +VVLMGKNTMM
Sbjct: 2 PREDRAPWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMXLRGKAVVLMGKNTMM 61
Query: 349 KRSVRMHAEKTGNNAYLNLIPLLVGNVGLIFTK 447
++++R H E N A L+P + GNVG +F K
Sbjct: 62 RKAIRGHLEN--NPALGKLLPQIRGNVGFVFXK 92
>gi|71144|pir||R5UTP0 acidic ribosomal protein P0 - Trypanosoma cruzi
>gi|10642|emb|CAA46199.1| (X65066) ribosomal PO protein
[Trypanosoma cruzi]
Length = 321
Frame 1 hits (HSPs): ___________________
__________________________________________________
Database sequence: | | | | | | | | 321
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 178 (62.7 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 42/118 (35%), Positives = 67/118 (56%), Frame = +1
Query: 184 AEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMMKRSVR 363
+E K Y+ + + +YG++L DNV S Q+ ++R+ LRG ++MGK T+ K+ V
Sbjct: 5 SEAKREYEERFNGCLTKYGRVLFCLMDNVRSQQVHDVRRDLRGLGELVMGKKTLQKKIVE 64
Query: 364 MHAEKTGNNAYLNLI-------PLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGS 516
AE +AY L+ LL GN LIFT ++ ++ + K++V APARVG+
Sbjct: 65 RRAEDKKASAYDKLLYNTCIEKKLLCGNTALIFTNEEIPVITAVLDKHRVQAPARVGA 122
>gi|1710588|sp|P26796|RLA0_TRYCR 60S ACIDIC RIBOSOMAL PROTEIN P0
>gi|295372|gb|AAA30236.1| (L15558) ribosomal protein P0
[Trypanosoma cruzi]
Length = 323
Frame 1 hits (HSPs): ___________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | | 323
0 50 100 150 200 250 300
__________________
Annotated Domains:
DOMO DM00904: RATACIDICRIBOSOMALPROTEINP0 1..321
PFAM Ribosomal_L10: Ribosomal protein L10 3..114
PFAM 60s_ribosomal: 60s Acidic ribosomal prot 219..323
PRODOM PD001309: RLA0(28) RL10(20) 8..131
PRODOM PD002352: RLA0(28) O04204(1) O74864(1) 133..266
__________________
Plus Strand HSPs:
Score = 178 (62.7 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 42/118 (35%), Positives = 67/118 (56%), Frame = +1
Query: 184 AEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMMKRSVR 363
+E K Y+ + + +YG++L DNV S Q+ ++R+ LRG ++MGK T+ K+ V
Sbjct: 5 SEAKREYEERFNGCLTKYGRVLFCLMDNVRSQQVHDVRRDLRGLGELVMGKKTLQKKIVE 64
Query: 364 MHAEKTGNNAYLNLI-------PLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGS 516
AE +AY L+ LL GN LIFT ++ ++ + K++V APARVG+
Sbjct: 65 RRAEDKKASAYDKLLYNTCIEKKLLCGNTALIFTNEEIPVITAVLDKHRVQAPARVGA 122
>gi|320173|pir||JH0752 ribosomal protein P0 - Trypanosoma cruzi
Length = 322
Frame 1 hits (HSPs): ___________________
Annotated Domains: _____
__________________________________________________
Database sequence: | | | | | | | | 322
0 50 100 150 200 250 300
__________________
Annotated Domains:
Entrez region: alanine/glycine-rich 282..304
__________________
Plus Strand HSPs:
Score = 177 (62.3 bits), Expect = 3.2e-12, P = 3.2e-12
Identities = 42/117 (35%), Positives = 66/117 (56%), Frame = +1
Query: 184 AEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMMKRSVR 363
+E K Y+ + + +YG++L DNV S Q+ ++R+ LRG ++MGK T+ K+ V
Sbjct: 5 SEAKREYEERFNGCLTKYGRVLFCLMDNVRSQQVHDVRRDLRGLGELVMGKKTLQKKIVE 64
Query: 364 MHAEKTGNNAYLNLI-------PLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVG 513
AE +AY L+ LL GN LIFT ++ ++ + K++V APARVG
Sbjct: 65 RRAEDKKASAYDKLLYNTCIEKKLLCGNTALIFTNEEIPVITAVLDKHRVQAPARVG 121
>gi|730578|sp|P39096|RLA0_LEICH 60S ACIDIC RIBOSOMAL PROTEIN P0
>gi|459866|gb|AAA29263.1| (L29300) ribosomal protein P0 [Leishmania
chagasi]
Length = 322
Frame 1 hits (HSPs): ___________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | | 322
0 50 100 150 200 250 300
__________________
Annotated Domains:
DOMO DM00904: RATACIDICRIBOSOMALPROTEINP0 1..320
PFAM Ribosomal_L10: Ribosomal protein L10 3..114
PFAM 60s_ribosomal: 60s Acidic ribosomal prot 216..322
PRODOM PD001309: RLA0(28) RL10(20) 8..130
PRODOM PD002352: RLA0(28) O04204(1) O74864(1) 132..265
__________________
Plus Strand HSPs:
Score = 176 (62.0 bits), Expect = 4.2e-12, P = 4.2e-12
Identities = 43/121 (35%), Positives = 69/121 (57%), Frame = +1
Query: 169 PKQTKAEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMM 348
P T A+++ Y+ +L D + +Y +L V DNV S Q+ ++R+G RG + +MGK T+
Sbjct: 2 PSITTAKRE--YEERLVDCLTKYSCVLFVGMDNVRSQQVHDVRRGCRGKAEFIMGKKTLQ 59
Query: 349 KRSVRMHAE-KTGN------NAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPAR 507
+ V A+ K + N LL GN GLIFT ++E++ + ++V APAR
Sbjct: 60 AKIVEKRAQAKDASPEAKPFNDQCEEYNLLSGNTGLIFTNNAVQEITSVLDGHRVKAPAR 119
Query: 508 VGS 516
VG+
Sbjct: 120 VGA 122
>gi|133037|sp|P22685|RLA0_DICDI 60S ACIDIC RIBOSOMAL PROTEIN P0
>gi|71142|pir||R5DOP0 ribosomal protein P0 - slime mold
(Dictyostelium discoideum) >gi|7337|emb|CAA39657.1| (X56194)
ribosomal acidic phosphoprotein P0 [Dictyostelium discoideum]
Length = 305
Frame 1 hits (HSPs): ___________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | || 305
0 50 100 150 200 250 300
__________________
Annotated Domains:
DOMO DM00904: RATACIDICRIBOSOMALPROTEINP0 1..303
PFAM Ribosomal_L10: Ribosomal protein L10 4..106
PFAM 60s_ribosomal: 60s Acidic ribosomal prot 194..305
PRODOM PD001309: RLA0(28) RL10(20) 7..123
PRODOM PD002352: RLA0(28) O04204(1) O74864(1) 125..254
PRODOM PD044755: RLA0_DICDI 284..304
__________________
Plus Strand HSPs:
Score = 172 (60.5 bits), Expect = 9.5e-12, P = 9.5e-12
Identities = 41/110 (37%), Positives = 62/110 (56%), Frame = +1
Query: 184 AEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMMKRSVR 363
+++K + K L Y +++V +D VGS+QLQ IRK +RG VLMGK TM+++ +R
Sbjct: 6 SKRKKLFIEKATKLFTTYDKMIVAEADFVGSSQLQKIRKSIRGIGAVLMGKKTMIRKVIR 65
Query: 364 MHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVG 513
A+ LN L N +IF K ++ EV + +VGAPA+ G
Sbjct: 66 DLADSKPELDALNTY--LKQNTCIIFCKDNIAEVKRVINTQRVGAPAKAG 113
>gi|6469605|gb|AAF13353.1|AF121339_1 (AF121339) acidic ribosomal phosphoprotein
P0 [Eufolliculina uhligi]
Length = 324
Frame 1 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | | | | | 324
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 166 (58.4 bits), Expect = 5.6e-11, P = 5.6e-11
Identities = 48/125 (38%), Positives = 70/125 (56%), Frame = +1
Query: 187 EKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMMK----- 351
E K Y KL L+EE +IL+ ++NVGS QLQ++R+ LR + +L GKNT+++
Sbjct: 1 EAKYDYWEKLWTLIEEAPRILICEANNVGSKQLQDLRRVLRNKATILFGKNTLIRAGLKH 60
Query: 352 RSVRMHAE----KTGNNAYL------NLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAP 501
R +AE + N + +LIPLL GNV LIF ++ EV V + KV A
Sbjct: 61 RLTEPNAEDEDFEKRKNTWTPKPELEHLIPLLRGNVCLIFCHAEMGEVLSAVEESKVPAE 120
Query: 502 ARVGS 516
A+ G+
Sbjct: 121 AKAGT 125
>gi|296172|emb|CAA50532.1| (X71408) protective antigen [Plasmodium falciparum]
Length = 81
Frame 1 hits (HSPs): ____________________________________
__________________________________________________
Database sequence: | | | | | | 81
0 20 40 60 80
Plus Strand HSPs:
Score = 159 (56.0 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 30/57 (52%), Positives = 43/57 (75%), Frame = +1
Query: 172 KQTKAEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNT 342
K +K +KK Y KL L+++Y +IL+V+ DNVGSNQ+ ++RK LRG + +LMGKNT
Sbjct: 25 KLSKQQKKQMYIEKLSSLIQQYSKILIVHVDNVGSNQMASVRKSLRGKATILMGKNT 81
>gi|730579|sp|P39097|RLA0_LEIIN 60S ACIDIC RIBOSOMAL PROTEIN P0
>gi|430759|emb|CAA51264.1| (X72714) ribosomal PO protein
[Leishmania infantum] >gi|430760|emb|CAA51263.1| (X72714) ribosomal
PO protein [Leishmania infantum]
Length = 323
Frame 1 hits (HSPs): ___________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | | 323
0 50 100 150 200 250 300
__________________
Annotated Domains:
PFAM Ribosomal_L10: Ribosomal protein L10 3..114
PFAM 60s_ribosomal: 60s Acidic ribosomal prot 217..323
PRODOM PD001309: RLA0(28) RL10(20) 8..131
PRODOM PD002352: RLA0(28) O04204(1) O74864(1) 133..266
__________________
Plus Strand HSPs:
Score = 149 (52.5 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 39/121 (32%), Positives = 65/121 (53%), Frame = +1
Query: 169 PKQTKAEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMM 348
P T A+++ Y+ +L D + +Y +L V DNV S Q+ ++ + LR + +MGK T+
Sbjct: 2 PSITTAKRE--YEERLVDCLTKYSCVLFVGMDNVRSQQVHDVGRALRAKAEFMMGKKTLQ 59
Query: 349 KRSVRMHAE-KTGN------NAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPAR 507
+ V A+ K + N LL GN GLIFT ++E++ + ++V AR
Sbjct: 60 GKIVEKRAQAKDASPEAKHFNDQCEEYNLLSGNTGLIFTNNAVQEITSVLDAHRVKRAAR 119
Query: 508 VGS 516
VG+
Sbjct: 120 VGA 122
>gi|1649041|gb|AAB17671.1| (U75275) acidic ribosomal phosphoprotein P0 [Bos
taurus]
Length = 50
Frame 1 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | 50
0 20 40
Plus Strand HSPs:
Score = 133 (46.8 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 26/50 (52%), Positives = 35/50 (70%), Frame = +1
Query: 193 KIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNT 342
K Y K+ L+++Y + +V +DNVGS Q+Q IR LRG +VVLMGKNT
Sbjct: 1 KSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNT 50
>gi|133038|sp|P17006|RLA0_HALCU ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG (L10E)
>gi|71145|pir||R5HS0C ribosomal protein L10 - Halobacterium
cutirubrum >gi|43454|emb|CAA33180.1| (X15078) L10e ribosomal
protein [Halobacterium cutirubrum]
Length = 352
Frame 1 hits (HSPs): _______________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 352
0 150 300
__________________
Annotated Domains:
DOMO DM00904: RATACIDICRIBOSOMALPROTEINP0 1..347
PFAM Ribosomal_L10: Ribosomal protein L10 11..110
PRODOM PD001309: RLA0(28) RL10(20) 16..127
PRODOM PD002352: RLA0(28) O04204(1) O74864(1) 129..261
PRODOM PD016489: RLA0(4) 263..309
__________________
Plus Strand HSPs:
Score = 137 (48.2 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 34/102 (33%), Positives = 56/102 (54%), Frame = +1
Query: 208 AKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMMKRSVRMHAEKTGN 387
A+L DL+E Y + VVN + S QLQ++R+GL G + V M +NT++ R++ E+ G+
Sbjct: 21 AELVDLLETYDSVGVVNVTGIPSKQLQDMRRGLHGQAAVRMSRNTLLVRAL----EEAGD 76
Query: 388 NAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVG 513
L + G VGL+ T + + +++ K AP G
Sbjct: 77 GLD-TLTEYVEGEVGLVATNDNPFGLYQQLENSKTPAPINAG 117
>gi|133039|sp|P13553|RLA0_HALHA ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG (L10E)
>gi|71146|pir||R5HSL0 ribosomal protein L10 [similarity] -
Halobacterium salinarum >gi|43534|emb|CAA31431.1| (X13008) ORF B
ribosomal protein (AA 1-352) [Halobacterium halobium]
>gi|10580651|gb|AAG19499.1| (AE005042) 50S ribosomal protein L10P;
Rpl10p [Halobacterium sp. NRC-1]
Length = 352
Frame 1 hits (HSPs): _______________
Annotated Domains: ___________________________________________
__________________________________________________
Database sequence: | | | | 352
0 150 300
__________________
Annotated Domains:
PFAM Ribosomal_L10: Ribosomal protein L10 11..110
PRODOM PD001309: RLA0(28) RL10(20) 16..127
PRODOM PD002352: RLA0(28) O04204(1) O74864(1) 129..261
PRODOM PD016489: RLA0(4) 263..309
__________________
Plus Strand HSPs:
Score = 134 (47.2 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 33/102 (32%), Positives = 56/102 (54%), Frame = +1
Query: 208 AKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMMKRSVRMHAEKTGN 387
A+L DL+E Y + VVN + S QLQ++R+GL G + + M +NT++ R++ E+ G+
Sbjct: 21 AELVDLLETYDSVGVVNVTGIPSKQLQDMRRGLHGQAALRMSRNTLLVRAL----EEAGD 76
Query: 388 NAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVG 513
L + G VGL+ T + + +++ K AP G
Sbjct: 77 GLD-TLTEYVEGEVGLVATNDNPFGLYQQLENSKTPAPINAG 117
>gi|5923684|gb|AAD56335.1|AC009326_22 (AC009326) putative 60S acidic ribosomal
protein, 5' partial [Arabidopsis thaliana]
Length = 230
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | 230
0 50 100 150 200
Plus Strand HSPs:
Score = 129 (45.4 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 26/26 (100%), Positives = 26/26 (100%), Frame = +1
Query: 436 IFTKGDLKEVSEEVAKYKVGAPARVG 513
IFTKGDLKEVSEEVAKYKVGAPARVG
Sbjct: 1 IFTKGDLKEVSEEVAKYKVGAPARVG 26
>gi|7674331|sp|Q9Y8J3|RLA0_METVO ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG (L10E)
>gi|4894939|gb|AAD32665.1|AF139164_2 (AF139164) ribosomal protein
L10 [Methanococcus voltae]
Length = 297
Frame 1 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | | | | 297
0 50 100 150 200 250
Plus Strand HSPs:
Score = 126 (44.4 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 37/119 (31%), Positives = 63/119 (52%), Frame = +1
Query: 175 QTKAEKKIA---YDA--KLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKN 339
+ K E KIA D L +L++ I +++ V S QLQ IR +R + M +N
Sbjct: 3 EVKFEHKIASWKVDEVNSLKELLKSGNVIALIDMMEVPSVQLQEIRDTIRDSMTLKMSRN 62
Query: 340 TMMKRSVRMHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGS 516
T+MKR++ AE+TGN ++ LI + LI T+ + ++ + + + K AP + G+
Sbjct: 63 TLMKRAIEEVAEETGNPSFTKLIDCMEKGAALIATEMNPFKLYKTLNESKSPAPIKAGA 121
>gi|3914776|sp|O52705|RLA0_METTL ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG (L10E)
>gi|2895648|gb|AAC64511.1| (AF044919) ribosomal protein L10
[Methanococcus thermolithotrophicus]
Length = 338
Frame 1 hits (HSPs): _________________
Annotated Domains: ____________________________________________
__________________________________________________
Database sequence: | | | | 338
0 150 300
__________________
Annotated Domains:
PFAM Ribosomal_L10: Ribosomal protein L10 9..113
PRODOM PD001309: RLA0(28) RL10(20) 14..130
PRODOM PD002352: RLA0(28) O04204(1) O74864(1) 132..263
PRODOM PD034531: RLA0(2) 265..305
__________________
Plus Strand HSPs:
Score = 117 (41.2 bits), Expect = 0.00019, P = 0.00019
Identities = 33/108 (30%), Positives = 61/108 (56%), Frame = +1
Query: 193 KIAYDAKLCDLMEEYGQIL-VVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMMKRSVRMH 369
KI KL +L++ GQI+ +V+ V + QLQ IR +RG + M +NT+++R+++
Sbjct: 14 KIEEVNKLKELLKN-GQIVALVDMMEVPARQLQEIRDKIRGTMTLKMSRNTLIERAIKEV 72
Query: 370 AEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGS 516
AE+TGN + L + +I T + ++ + + + K AP + G+
Sbjct: 73 AEETGNPEFAKLADYIDKGAAIITTDMNPFKLYKTLEESKSPAPIKGGA 121
>gi|133042|sp|P15826|RLA0_METVA ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG (L10E)
(ML2) >gi|71148|pir||R5MX10 ribosomal protein L10 - Methanococcus
vannielii >gi|44743|emb|CAA33410.1| (X15352) ribosomal protein L10
[Methanococcus vannielii]
Length = 336
Frame 1 hits (HSPs): ________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 336
0 150 300
__________________
Annotated Domains:
DOMO DM00904: RATACIDICRIBOSOMALPROTEINP0 1..334
PFAM Ribosomal_L10: Ribosomal protein L10 9..113
PRODOM PD001309: RLA0(28) RL10(20) 14..126
PRODOM PD002352: RLA0(28) O04204(1) O74864(1) 132..263
PRODOM PD034531: RLA0(2) 265..305
__________________
Plus Strand HSPs:
Score = 113 (39.8 bits), Expect = 0.00074, P = 0.00074
Identities = 28/101 (27%), Positives = 55/101 (54%), Frame = +1
Query: 214 LCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMMKRSVRMHAEKTGNNA 393
L +L++ I +++ V + QLQ IR +R + M +NT++KR+V AE+TGN
Sbjct: 21 LKELLKSANVIALIDMMEVPAVQLQEIRDKIRDQMTLKMSRNTLIKRAVEEVAEETGNPE 80
Query: 394 YLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGS 516
+ L+ L ++ T+ + ++ + + + K AP + G+
Sbjct: 81 FAKLVDYLDKGAAIVVTEMNPFKLFKTLEESKSPAPIKGGA 121
>gi|730577|sp|P41198|RLA0_HALVO ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG (L10E)
>gi|421721|pir||S34136 ribosomal protein L10 - Haloferax volcanii
>gi|313018|emb|CAA41724.1| (X58924) ribosomal protein L10e
[Haloferax volcanii]
Length = 350
Frame 1 hits (HSPs): ______________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 350
0 150 300
__________________
Annotated Domains:
DOMO DM00904: RATACIDICRIBOSOMALPROTEINP0 1..349
PFAM Ribosomal_L10: Ribosomal protein L10 11..110
PRODOM PD001309: RLA0(28) RL10(20) 16..127
PRODOM PD002352: RLA0(28) O04204(1) O74864(1) 129..254
PRODOM PD016489: RLA0(4) 261..301
__________________
Plus Strand HSPs:
Score = 112 (39.4 bits), Expect = 0.0011, P = 0.0011
Identities = 30/101 (29%), Positives = 52/101 (51%), Frame = +1
Query: 211 KLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMMKRSVRMHAEKTGNN 390
+L D +E Y + VV + S QLQ++R+ L G + V M +NT++ R++ ++ N+
Sbjct: 22 ELVDFIESYESVGVVGVAGIPSRQLQSMRRELHGSAAVRMSRNTLVNRAL----DEV-ND 76
Query: 391 AYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVG 513
+ L + G V LI T + + +E+ K AP G
Sbjct: 77 GFEELKEYIAGQVALIGTNDNPFALFKELEASKTPAPINAG 117
>gi|3642676|gb|AAC36526.1| (U89419) 60S acidic ribosomal protein P0 [Mus
musculus]
Length = 131
Frame 1 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | 131
0 50 100
Plus Strand HSPs:
Score = 94 (33.1 bits), Expect = 0.0032, P = 0.0032
Identities = 24/59 (40%), Positives = 33/59 (55%), Frame = +1
Query: 340 TMMKRSVRMHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGS 516
TMM+R VR H E N A ++ + NV +FTK DL E+ + + KV A AR G+
Sbjct: 2 TMMRRDVRGHLEN--NPALEKMLAHIRWNVVFVFTKEDLTEIRDMLVANKVPAAARAGA 58
>gi|6322843 ref|NP_012916.1| involved in mRNA decay; Mrt4p [Saccharomyces
cerevisiae] >gi|465665|sp|P33201|YKA9_YEAST HYPOTHETICAL 27.1 KD
PROTEIN UFD4-CAP1 INTERGENIC REGION >gi|320758|pir||S30013
hypothetical protein YKL009w - yeast (Saccharomyces cerevisiae)
>gi|263500|gb|AAB24904.1| (S53418) ribosomal protein L10 homolog
[Saccharomyces cerevisiae=yeast, Peptide, 236 aa]
>gi|485985|emb|CAA81844.1| (Z28009) ORF YKL009w [Saccharomyces
cerevisiae]
Length = 236
Frame 1 hits (HSPs): _________________________
__________________________________________________
Database sequence: | | | | | | 236
0 50 100 150 200
Plus Strand HSPs:
Score = 106 (37.3 bits), Expect = 0.0033, P = 0.0033
Identities = 32/115 (27%), Positives = 59/115 (51%), Frame = +1
Query: 142 SSLSSSSMAPKQTKAEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSV 321
S L + + K+ + K+ +D ++ + ++ Y + V++ D+V + LQ IR G S
Sbjct: 7 SKLVTLAQTDKKGRENKERIFD-EVREALDTYRYVWVLHLDDVRTPVLQEIRTSWAG-SK 64
Query: 322 VLMGKNTMMKRSV-RMHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKY 486
++MGK ++++++ E+ N Y L L G GL+FT D+ V E Y
Sbjct: 65 LIMGKRKVLQKALGEKREEEYKENLY-QLSKLCSGVTGLLFTDEDVNTVKEYFKSY 119
>gi|133040|sp|P15825|RLA0_HALMA ACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG (L10E)
(HMAL10) >gi|71147|pir||R5HS10 ribosomal protein L10 [similarity] -
Haloarcula marismortui >gi|43605|emb|CAA35795.1| (X51430) L10
ribosomal protein (AA 1-348) [Haloarcula marismortui]
Length = 348
Frame 1 hits (HSPs): _________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 348
0 150 300
__________________
Annotated Domains:
DOMO DM00904: RATACIDICRIBOSOMALPROTEINP0 1..345
PFAM Ribosomal_L10: Ribosomal protein L10 11..110
PRODOM PD001309: RLA0(28) RL10(20) 10..127
PRODOM PD002352: RLA0(28) O04204(1) O74864(1) 129..259
PRODOM PD016489: RLA0(4) 263..309
__________________
Plus Strand HSPs:
Score = 108 (38.0 bits), Expect = 0.0039, P = 0.0039
Identities = 34/122 (27%), Positives = 64/122 (52%), Frame = +1
Query: 148 LSSSSMAPKQTKAE-KKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVV 324
+S+ S +T E K+ DA + +++E Y + VVN + S QLQ++R+ L G + +
Sbjct: 1 MSAESERKTETIPEWKQEEVDA-IVEMIESYESVGVVNIAGIPSRQLQDMRRDLHGTAEL 59
Query: 325 LMGKNTMMKRSVRMHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPA 504
+ +NT+++R++ ++ +L + G VGLI T + + +E+ K AP
Sbjct: 60 RVSRNTLLERAL-----DDVDDGLEDLNGYITGQVGLIGTDDNPFSLFQELEASKTPAPI 114
Query: 505 RVG 513
G
Sbjct: 115 GAG 117
>gi|7303797|gb|AAF58844.1| (AE003831) CG1381 gene product [Drosophila
melanogaster]
Length = 256
Frame 1 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | | | | 256
0 50 100 150 200 250
Plus Strand HSPs:
Score = 104 (36.6 bits), Expect = 0.0074, P = 0.0074
Identities = 32/109 (29%), Positives = 56/109 (51%), Frame = +1
Query: 187 EKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMMKRSV-R 363
+++I D + C + +Y I V N+ ++ L+++R+ L+ +S + GKN +M+ + R
Sbjct: 23 KQRIVDDIRFC--VGKYPNIFVFQVQNMRNSLLKDLRQELKKNSRFIFGKNRVMQIGLGR 80
Query: 364 MHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVG 513
+E+ + L L G VGL+FT +EV E Y AR G
Sbjct: 81 TKSEEVEPELH-KLSKRLTGQVGLLFTDKSKEEVLEWAENYWAVEYARSG 129
>gi|6323372 ref|NP_013443.1| Ylr339cp [Saccharomyces cerevisiae]
>gi|2132712|pir||S69313 probable membrane protein YLR339c - yeast
(Saccharomyces cerevisiae) >gi|2340035|gb|AAB67268.1| (U19028)
Ylr339cp [Saccharomyces cerevisiae]
Length = 183
Frame -3 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | | 183
0 50 100 150
Minus Strand HSPs:
Score = 98 (34.5 bits), Expect = 0.018, P = 0.017
Identities = 37/111 (33%), Positives = 46/111 (41%), Frame = -3
Query: 512 PTRAGAPTLYLATSSLTSFRSPLVKINPTLPTRSGIRLR*ALFPVFSACILTERFIMVFF 333
P AGA TL + L S LVK PTLP G + L MVF
Sbjct: 39 PALAGAATLLETITFLISVNGSLVKTKPTLPLTKGNNF--SKSGKSDKKPLMALLTMVFL 96
Query: 332 PMRTTESPRRPLRMFWSWFDPTLSEFTTRIWPYSSIRSHSFAS*AIFFSAL 180
P++TT P ++ TLS TT YSS S + A + FFS +
Sbjct: 97 PIKTTALPLNSFLTSCICWEETLSTPTTNKDLYSSKYSLNLAKYSAFFSRM 147
>gi|7705875 ref|NP_057267.1| 60S acidic ribosomal protein PO [Homo sapiens]
>gi|5815233|gb|AAD52608.1|AF173378_1 (AF173378) 60S acidic
ribosomal protein PO [Homo sapiens]
Length = 239
Frame 1 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | | | 239
0 50 100 150 200
Plus Strand HSPs:
Score = 97 (34.1 bits), Expect = 0.049, P = 0.048
Identities = 31/123 (25%), Positives = 65/123 (52%), Frame = +1
Query: 148 LSSSSMAPKQTKAEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVL 327
+S + A K + ++ + + + C ++ Y + + + N+ +++L++IR + S +
Sbjct: 10 VSLTKTAKKGLELKQNLIEELRKC--VDTYKYLFIFSVANMRNSKLKDIRNAWK-HSRMF 66
Query: 328 MGKNTMMKRSV-RMHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPA 504
GKN +M ++ R +++ +N + + L G VGL+FT +EV+E KY A
Sbjct: 67 FGKNKVMMVALGRSPSDEYKDNLH-QVSKTLRGEVGLLFTNRTKEEVNEWFTKYTEMDYA 125
Query: 505 RVGS 516
R G+
Sbjct: 126 RAGN 129
WARNING: HSPs involving 34 database sequences were not reported due to the
limiting value of parameter B = 50.
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.98
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.338 0.151 0.546
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.345 0.142 0.513
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.317 0.133 0.360 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.336 0.140 0.500
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.347 0.156 0.480
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.341 0.147 0.502
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 171 170 10. 75 3 12 22 0.11 34
31 0.11 37
+2 0 172 171 10. 75 3 12 22 0.11 34
31 0.11 37
+1 0 172 171 10. 75 3 12 22 0.11 34
31 0.11 37
-1 0 172 171 10. 75 3 12 22 0.11 34
31 0.11 37
-2 0 172 171 10. 75 3 12 22 0.11 34
31 0.11 37
-3 0 171 171 10. 75 3 12 22 0.11 34
31 0.11 37
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 84
No. of states in DFA: 588 (58 KB)
Total size of DFA: 199 KB (256 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 184.51u 1.07s 185.58t Elapsed: 00:00:31
Total cpu time: 184.55u 1.11s 185.66t Elapsed: 00:00:31
Start: Fri Feb 1 22:07:08 2002 End: Fri Feb 1 22:07:39 2002
WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000