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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs352015          
refSNP ID: rs352015
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:79/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:A/T
Ancestral Allele:A
Clinical Association:unknown
HGVS Names
Links , Linkout

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss44569929 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs352015 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss447228KWOK|OVLP-000621-368138fwd/TA/Ttgactttgagaggcagacaacaatgtcaacgtacctgagacttttggggcaaataaacta06/30/0010/10/0379Genomic99 %
ss448468KWOK|OVLP-000621-371522fwd/TA/Ttgactttgagaggcagacaacaatgtcaacgtacctgagacttttggggcaaataaacta06/30/0010/10/0385Genomic99 %
ss555201SC_JCM|AC011989.3_53102fwd/TA/Ttgactttgagaggcagacaacaatgtcaacgtacctgagacttttggggcaaataaacta07/12/0010/10/0385Genomicunknown
ss908642KWOK|OVLP-000804-187818fwd/TA/Ttgactttgagaggcagacaacaatgtcaacgtacctgagacttttggggcaaataaacta09/01/0010/10/0386Genomic99 %
ss909925KWOK|OVLP-000804-193595byFreqfwd/TA/Ttgactttgagaggcagacaacaatgtcaacgtacctgagacttttggggcaaataaacta09/01/0004/07/0486Genomic99 %
ss1889948KWOK|OVLP-000925-292631fwd/TA/Ttgactttgagaggcagacaacaatgtcaacgtacctgagacttttggggcaaataaacta10/06/0010/10/0387Genomic99 %
ss2238106TSC-CSHL|TSC0639803fwd/TA/Ttgactttgagaggcagacaacaatgtcaacgtacctgagacttttggggcaaataaacta10/20/0010/10/0388Genomic95 %
ss5518092TSC-CSHL|TSC0650698fwd/TA/Ttgactttgagaggcagacaacaatgtcaacgtacctgagacttttggggcaaataaacta09/21/0210/10/03108Genomicunknown
ss44569929ABI|hCV1015663byFreqrev/A/Ttagtttatttgccccaaaagtctcaggtacgttgacattgttgtctgcctctcaaagtca07/19/0511/03/06126Genomicunknown
ss84178413HGSV|Cor19240_SNV_20070510.chr4_75172714rev/A/Ttagtttatttgccccaaaagtctcaggtacgttgacattgttgtctgcctctcaaagtca11/30/0712/06/07130Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs352015|allelePos=301|totalLen=601|taxid=9606|snpclass=1|alleles='A/T'|mol=Genomic|build=130
 GGTCCCTGGA TCAATGTTTA TCTTTGGTAC TCTAGCCCAC TGTCATTTAT ATCAATGTAT
 TATTGGAGCA AGTCGTAATA GCAAAAGTGA GTACCACATT AAATTCTCTG TGAAAATTTG
 GAGTGCAAGC AGACCTCCAT TTAGGTCATC AAGGTAGCGG GTGGCAGATA GGGTTATTTG
 AGGGAATGGT CACCAGATGA TGAGGGCAGA AAACAGATGT TCTCTGTATT CAAAGATCAG
 TCTTAGAACA GTGTGACACA GCATGACCTG TGACTTTGAG AGGCAGACAA CAATGTCAAC
 W
 GTACCTGAGA CTTTTGGGGC AAATAAACTA CAAGAGAAAA AGAGGAATGA TGGATGACCC
 CACTCTGTTA TTACGATTCC TTATTTGAGA ATTATCCTGA AATCTCCTGT TAGAGATTTC
 CAGAAACTGG TGGGATGTGA GAGATACAGA GATGGAGCTT CTGCAATAGC CAGTTTGGGC
 AATGTTTCCT CTGCTGGAAT ATCAAAGTTA TAAGACAGGA GTTCATTTGT ACTAGATTTC
 CCATGAAGAC CGAGACAAAG GCTTATGTGG CTATACCAAT TCTAAGTCCG CAAGCCCACA

  GeneView back to top
GeneView: no link established by analysis of contig annotation
GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs352015 maps exactly once on NCBI human chromosome 4
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
4NW_001838914.11492036770618653minusTalt_assembly_8HuRefHuRefview300
4NW_922162.12199280872167834minusTalt_assembly_1CeleraCeleraview300
4NT_006216.14331468975026543minusTref_assemblyreferencereferenceview300

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
AC011989 AC010784 AC011989.3 AC046188.4
dbSNP Blast Analysis
GenBank HTGS Finished:GenBank HTGS Draft:
AC097709.3 NC_000004.10 AC010784.5 AC046188.4

  Population Diversity back to top

Sample AscertainmentGenotype Detailnew.gifAlleles
ss#PopulationIndividual
Group		Chrom.
Sample Cnt.
SourceA/A
A/T
T/T
HWPA
T
ss44569929HapMap-CEUEuropean 118IG 1.000 1.000
HapMap-HCBAsian 78IG 1.000 1.000
HapMap-JPTAsian 82IG 0.976 0.024 1.000 0.988 0.012
HapMap-YRISub-Saharan African 114IG 0.386 0.509 0.105 0.439 0.640 0.360
ss909925SC_12_AAsian 18IG 1.000 1.000
SC_12_AAAfrican American 16IG 0.250 0.750 0.752 0.125 0.875

SummaryAverage
Het.+/- std err:		Individual
Count		Founders
Count		Individual
Overlap		Genotype
Conflict
0.287+/-0.24729423400

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
byFreqwith2hitwithHapMapFreq
DoubleHit found by:  BCM_SSAHASNP, NCBI
UNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .