| Kingdom |
Category |
Genus/Species |
Count |
|
|
|
3 |
| Archaea |
|
|
59 |
| |
|
|
3 |
| |
Crenarchaeota |
|
5 |
| |
|
Caldivirga maquilingensis (cma) |
1 |
| |
|
Nitrosopumilus maritimus (nmr) |
1 |
| |
|
Sulfolobus acidocaldarius (sai) |
1 |
| |
|
Sulfolobus solfataricus (sso) |
2 |
| |
Euryarchaeota |
|
54 |
| |
|
Haloarcula marismortui (hma) |
1 |
| |
|
Methanosarcina acetivorans (mac) |
7 |
| |
|
Methanococcus aeolicus (mae) |
2 |
| |
|
Methanosarcina barkeri (mba) |
6 |
| |
|
Candidatus Methanoregula boonei (mbn) |
1 |
| |
|
Methanococcoides burtonii (mbu) |
3 |
| |
|
Methanoculleus marisnigri (mem) |
3 |
| |
|
Methanospirillum hungatei (mhu) |
2 |
| |
|
Methanococcus jannaschii (mja) |
3 |
| |
|
Methanocorpusculum labreanum (mla) |
3 |
| |
|
Methanosarcina mazei (mma) |
2 |
| |
|
Methanococcus maripaludis S2 (mmp) |
1 |
| |
|
Methanococcus maripaludis C7 (mmz) |
1 |
| |
|
Methanobrevibacter smithii ATCC 35061 (msi) |
4 |
| |
|
Methanosphaera stadtmanae (mst) |
3 |
| |
|
Methanobacterium thermoautotrophicum (mth) |
2 |
| |
|
Pyrococcus furiosus (pfu) |
2 |
| |
|
Uncultured methanogenic archaeon RC-I (rci) |
7 |
| |
|
Thermococcus onnurineus (ton) |
1 |
| Bacteria |
|
|
3034 |
| |
Acidobacteria |
|
12 |
| |
|
Acidobacteria bacterium (aba) |
1 |
| |
|
Solibacter usitatus (sus) |
11 |
| |
Actinobacteria |
|
23 |
| |
|
Acidothermus cellulolyticus (ace) |
1 |
| |
|
Bifidobacterium longum DJO10A (blj) |
2 |
| |
|
Bifidobacterium longum NCC2705 (blo) |
1 |
| |
|
Corynebacterium diphtheriae (cdi) |
1 |
| |
|
Kocuria rhizophila (krh) |
1 |
| |
|
Mycobacterium abscessus ATCC 19977T (mab) |
1 |
| |
|
Mycobacterium bovis BCG Pasteur 1173P2 (mbb) |
2 |
| |
|
Mycobacterium gilvum (mgi) |
2 |
| |
|
Propionibacterium acnes (pac) |
1 |
| |
|
Rubrobacter xylanophilus (rxy) |
2 |
| |
|
Salinispora arenicola (saq) |
2 |
| |
|
Streptomyces coelicolor (sco) |
2 |
| |
|
Streptomyces griseus (sgr) |
3 |
| |
|
Streptomyces avermitilis (sma) |
1 |
| |
|
Thermobifida fusca (tfu) |
1 |
| |
Bacteroides |
|
24 |
| |
|
Bacteroides fragilis YCH46 (bfr) |
1 |
| |
|
Bacteroides fragilis NCTC9343 (bfs) |
3 |
| |
|
Bacteroides thetaiotaomicron (bth) |
2 |
| |
|
Bacteroides vulgatus (bvu) |
1 |
| |
|
Cytophaga hutchinsonii (chu) |
4 |
| |
|
Flavobacterium johnsoniae (fjo) |
6 |
| |
|
Flavobacterium psychrophilum (fps) |
1 |
| |
|
Gramella forsetii (gfo) |
1 |
| |
|
Parabacteroides distasonis (pdi) |
4 |
| |
|
Salinibacter ruber (sru) |
1 |
| |
Cyanobacteria |
|
29 |
| |
|
Acaryochloris marina (amr) |
2 |
| |
|
Anabaena sp. PCC7120 (ana) |
1 |
| |
|
Anabaena variabilis (ava) |
3 |
| |
|
Cyanothece sp. ATCC 51142 (cyt) |
4 |
| |
|
Gloeobacter violaceus (gvi) |
2 |
| |
|
Microcystis aeruginosa (mar) |
3 |
| |
|
Nostoc punctiforme (npu) |
13 |
| |
|
Thermosynechococcus elongatus (tel) |
1 |
| |
Deinococcus-Thermus |
|
1 |
| |
|
Thermus thermophilus HB27 (tth) |
1 |
| |
Firmicutes |
|
2556 |
| |
|
Anoxybacillus flavithermus (afl) |
16 |
| |
|
Alkaliphilus metalliredigens (amt) |
54 |
| |
|
Alkaliphilus oremlandii (aoe) |
69 |
| |
|
Bacillus anthracis Sterne (bat) |
8 |
| |
|
Bacillus amyloliquefaciens (bay) |
14 |
| |
|
Bacillus cereus ATCC 10987 (bca) |
28 |
| |
|
Bacillus cereus ATCC 14579 (bce) |
9 |
| |
|
Bacillus clausii (bcl) |
14 |
| |
|
Bacillus cereus subsp. cytotoxis NVH 391-98 (bcy) |
3 |
| |
|
Bacillus cereus ZK (bcz) |
3 |
| |
|
Bacillus halodurans (bha) |
14 |
| |
|
Bacillus licheniformis DSM13 (bld) |
4 |
| |
|
Bacillus pumilus (bpu) |
3 |
| |
|
Bacillus subtilis (bsu) |
10 |
| |
|
Bacillus thuringiensis 97-27 (btk) |
3 |
| |
|
Bacillus thuringiensis Al Hakam (btl) |
5 |
| |
|
Bacillus weihenstephanensis (bwe) |
13 |
| |
|
Clostridium acetobutylicum (cac) |
64 |
| |
|
Clostridium botulinum B1 Okra (cbb) |
13 |
| |
|
Clostridium beijerinckii (cbe) |
93 |
| |
|
Clostridium botulinum F Langeland (cbf) |
29 |
| |
|
Clostridium botulinum A Hall (cbh) |
10 |
| |
|
Clostridium botulinum B Eklund 17B (cbk) |
26 |
| |
|
Clostridium botulinum A3 Loch Maree (cbl) |
30 |
| |
|
Clostridium botulinum A ATCC 3502 (cbo) |
2 |
| |
|
Clostridium botulinum E3 (cbt) |
33 |
| |
|
Clostridium difficile (cdf) |
39 |
| |
|
Carboxydothermus hydrogenoformans (chy) |
13 |
| |
|
Clostridium kluyveri (ckl) |
105 |
| |
|
Clostridium novyi (cno) |
43 |
| |
|
Clostridium perfringens 13 (cpe) |
7 |
| |
|
Clostridium perfringens ATCC 13124 (cpf) |
36 |
| |
|
Coprothermobacter proteolyticus (cpo) |
3 |
| |
|
Clostridium perfringens SM101 (cpr) |
13 |
| |
|
Clostridium phytofermentans (cpy) |
116 |
| |
|
Clostridium tetani E88 (ctc) |
29 |
| |
|
Clostridium thermocellum (cth) |
1190 |
| |
|
Candidatus Desulforudis audaxviator (dau) |
3 |
| |
|
Desulfotomaculum reducens (drm) |
36 |
| |
|
Desulfitobacterium hafniense (dsy) |
68 |
| |
|
Enterococcus faecalis (efa) |
15 |
| |
|
Exiguobacterium sibiricum (esi) |
5 |
| |
|
Finegoldia magna (fma) |
5 |
| |
|
Geobacillus kaustophilus (gka) |
6 |
| |
|
Geobacillus thermodenitrificans (gtn) |
10 |
| |
|
Heliobacterium modesticaldum (hmo) |
52 |
| |
|
Listeria innocua (lin) |
5 |
| |
|
Lactobacillus johnsonii (ljo) |
2 |
| |
|
Lactococcus lactis subsp. cremoris SK11 (llc) |
1 |
| |
|
Lactococcus lactis subsp. cremoris MG1363 (llm) |
2 |
| |
|
Listeria monocytogenes F2365 (lmf) |
1 |
| |
|
Listeria monocytogenes EGD-e (lmo) |
3 |
| |
|
Lactobacillus reuteri F275 (Kitasato) (lrf) |
1 |
| |
|
Lactobacillus sakei (lsa) |
2 |
| |
|
Lactobacillus salivarius (lsl) |
2 |
| |
|
Lysinibacillus sphaericus (lsp) |
9 |
| |
|
Listeria welshimeri SLCC5334 (lwe) |
14 |
| |
|
Moorella thermoacetica (mta) |
10 |
| |
|
Natranaerobius thermophilus (nth) |
11 |
| |
|
Oceanobacillus iheyensis (oih) |
6 |
| |
|
Pelotomaculum thermopropionicum (pth) |
10 |
| |
|
Staphylococcus epidermidis RP62A (ser) |
1 |
| |
|
Streptococcus equi (sez) |
1 |
| |
|
Streptococcus gordonii (sgo) |
1 |
| |
|
Staphylococcus haemolyticus (sha) |
3 |
| |
|
Streptococcus pyogenes MGAS10394 (serotype M6) (spa) |
1 |
| |
|
Streptococcus pneumoniae D39 (spd) |
1 |
| |
|
Streptococcus pyogenes MGAS2096 (serotype M3) (spj) |
8 |
| |
|
Streptococcus pneumoniae Hungary19A 6 (spv) |
1 |
| |
|
Streptococcus sanguinis (ssa) |
1 |
| |
|
Staphylococcus saprophyticus (ssp) |
1 |
| |
|
Streptococcus thermophilus CNRZ1066 (stc) |
1 |
| |
|
Symbiobacterium thermophilum (sth) |
6 |
| |
|
Streptococcus thermophilus LMG18311 (stl) |
1 |
| |
|
Thermoanaerobacter sp. X514 (tex) |
18 |
| |
|
Thermoanaerobacter pseudethanolicus (tpd) |
28 |
| |
|
Thermoanaerobacter tengcongensis (tte) |
40 |
| |
Fusobacteria |
|
5 |
| |
|
Fusobacterium nucleatum (fnu) |
5 |
| |
Green nonsulfur bacteria |
|
16 |
| |
|
Chloroflexus aurantiacus (cau) |
6 |
| |
|
Dehalococcoides sp. BAV1 (deb) |
1 |
| |
|
Dehalococcoides sp. CBDB1 (deh) |
1 |
| |
|
Dehalococcoides ethenogenes (det) |
2 |
| |
|
Herpetosiphon aurantiacus (hau) |
5 |
| |
|
Roseiflexus castenholzii DSM13941 (rca) |
1 |
| |
Green sulfur bacteria |
|
8 |
| |
|
Chlorobium chlorochromatii (cch) |
1 |
| |
|
Chlorobium phaeobacteroides DSM 266 (cph) |
1 |
| |
|
Chloroherpeton thalassium (cts) |
4 |
| |
|
Prosthecochloris aestuarii (paa) |
2 |
| |
Hyperthermophilic bacteria |
|
30 |
| |
|
Dictyoglomus thermophilum (dth) |
7 |
| |
|
Fervidobacterium nodosum (fno) |
1 |
| |
|
Hydrogenobaculum sp. Y04AAS1 (hya) |
1 |
| |
|
Petrotoga mobilis (pmo) |
5 |
| |
|
Thermotoga lettingae (tle) |
3 |
| |
|
Thermotoga maritima (tma) |
1 |
| |
|
Thermosipho melanesiensis (tme) |
3 |
| |
|
Thermotoga petrophila (tpt) |
1 |
| |
|
Thermotoga sp. RQ2 (trq) |
3 |
| |
|
Thermodesulfovibrio yellowstonii (tye) |
5 |
| |
Planctomyces |
|
1 |
| |
|
Rhodopirellula baltica (rba) |
1 |
| |
Proteobacteria |
|
206 |
| |
|
Acinetobacter baumannii SDF (abm) |
1 |
| |
|
Acinetobacter baumannii AYE (aby) |
1 |
| |
|
Anaeromyxobacter dehalogenans (ade) |
2 |
| |
|
Alkalilimnicola ehrlichei (aeh) |
1 |
| |
|
Anaeromyxobacter sp. Fw109-5 (afw) |
1 |
| |
|
Actinobacillus succinogenes (asu) |
1 |
| |
|
Agrobacterium tumefaciens C58 (Cereon) (atc) |
1 |
| |
|
Azoarcus sp. BH72 (azo) |
1 |
| |
|
Bdellovibrio bacteriovorus (bba) |
1 |
| |
|
Burkholderia cenocepacia J2315 (bcj) |
1 |
| |
|
Brucella canis (bcs) |
2 |
| |
|
Bradyrhizobium japonicum (bja) |
1 |
| |
|
Brucella abortus S19 (bmc) |
1 |
| |
|
Bordetella petrii (bpt) |
2 |
| |
|
Bradyrhizobium sp. ORS278 (bra) |
2 |
| |
|
Burkholderia thailandensis (bte) |
2 |
| |
|
Caulobacter sp. K31 (cak) |
1 |
| |
|
Campylobacter curvus (ccv) |
1 |
| |
|
Cellvibrio japonicus (cja) |
3 |
| |
|
Campylobacter jejuni 81116 (cju) |
1 |
| |
|
Chromohalobacter salexigens (csa) |
1 |
| |
|
Delftia acidovorans (dac) |
1 |
| |
|
Desulfovibrio desulfuricans (dde) |
6 |
| |
|
Candidatus Desulfococcus oleovorans (dol) |
3 |
| |
|
Desulfotalea psychrophila (dps) |
1 |
| |
|
Desulfovibrio vulgaris DP4 (dvl) |
3 |
| |
|
Desulfovibrio vulgaris Hildenborough (dvu) |
1 |
| |
|
Francisella tularensis subsp. holarctica FTNF002-00 (fta) |
1 |
| |
|
Francisella tularensis subsp. holarctica OSU18 (fth) |
1 |
| |
|
Geobacter bemidjiensis (gbm) |
4 |
| |
|
Geobacter lovleyi (glo) |
3 |
| |
|
Geobacter metallireducens (gme) |
4 |
| |
|
Geobacter sulfurreducens (gsu) |
9 |
| |
|
Geobacter uraniumreducens (gur) |
8 |
| |
|
Hahella chejuensis (hch) |
1 |
| |
|
Helicobacter hepaticus (hhe) |
1 |
| |
|
Haemophilus influenzae 86-028NP (nontypeable) (hit) |
1 |
| |
|
Hyphomonas neptunium (hne) |
1 |
| |
|
Lawsonia intracellularis (lip) |
1 |
| |
|
Legionella pneumophila Corby (lpc) |
2 |
| |
|
Legionella pneumophila Lens (lpf) |
26 |
| |
|
Magnetospirillum magneticum (mag) |
5 |
| |
|
Marinobacter aquaeolei (maq) |
1 |
| |
|
Methylobacterium extorquens (mex) |
1 |
| |
|
Mesorhizobium loti (mlo) |
1 |
| |
|
Minibacterium massiliensis (mms) |
1 |
| |
|
Mannheimia succiniciproducens (msu) |
1 |
| |
|
Myxococcus xanthus (mxa) |
1 |
| |
|
Novosphingobium aromaticivorans (nar) |
2 |
| |
|
Nitrosomonas eutropha (net) |
1 |
| |
|
Nitratiruptor sp. SB155-2 (nis) |
2 |
| |
|
Neisseria meningitidis 053442 (serogroup C) (nmn) |
1 |
| |
|
Nitrosospira multiformis (nmu) |
1 |
| |
|
Nitrosococcus oceani (noc) |
2 |
| |
|
Nitrobacter winogradskyi (nwi) |
1 |
| |
|
Ochrobactrum anthropi (oan) |
2 |
| |
|
Pseudomonas aeruginosa PAO1 (pae) |
1 |
| |
|
Pelobacter carbinolicus (pca) |
2 |
| |
|
Pseudomonas fluorescens Pf0-1 (pfo) |
1 |
| |
|
Pseudoalteromonas haloplanktis (pha) |
1 |
| |
|
Psychromonas ingrahamii (pin) |
1 |
| |
|
Photorhabdus luminescens (plu) |
3 |
| |
|
Proteus mirabilis (pmr) |
2 |
| |
|
Pasteurella multocida (pmu) |
1 |
| |
|
Pseudomonas mendocina (pmy) |
1 |
| |
|
Polaromonas naphthalenivorans (pna) |
3 |
| |
|
Pelobacter propionicus (ppd) |
5 |
| |
|
Photobacterium profundum (ppr) |
1 |
| |
|
Pseudomonas stutzeri (psa) |
1 |
| |
|
Pseudomonas syringae pv. syringae B728a (psb) |
1 |
| |
|
Pseudomonas syringae pv. phaseolicola 1448A (psp) |
1 |
| |
|
Roseobacter denitrificans (rde) |
1 |
| |
|
Ralstonia eutropha JMP134 (reu) |
2 |
| |
|
Rhodoferax ferrireducens (rfr) |
2 |
| |
|
Rhizobium leguminosarum (rle) |
3 |
| |
|
Rhodopseudomonas palustris HaA2 (rpb) |
2 |
| |
|
Rhodopseudomonas palustris BisB5 (rpd) |
1 |
| |
|
Ralstonia solanacearum (rso) |
1 |
| |
|
Syntrophus aciditrophicus (sat) |
4 |
| |
|
Shewanella baltica OS195 (sbn) |
2 |
| |
|
Sorangium cellulosum (scl) |
7 |
| |
|
Shewanella denitrificans (sdn) |
1 |
| |
|
Salmonella enterica subsp. enterica serovar Dublin (sed) |
1 |
| |
|
Syntrophobacter fumaroxidans (sfu) |
2 |
| |
|
Shewanella halifaxensis (shl) |
2 |
| |
|
Sinorhizobium medicae (smd) |
1 |
| |
|
Shewanella putrefaciens (spc) |
1 |
| |
|
Sulfurovum sp. NBC37-1 (sun) |
1 |
| |
|
Shewanella woodyi ATCC51908 (swd) |
4 |
| |
|
Shewanella piezotolerans WP3 (swp) |
1 |
| |
|
Thiobacillus denitrificans (tbd) |
2 |
| |
|
Verminephrobacter eiseniae (vei) |
1 |
| |
|
Vibrio parahaemolyticus (vpa) |
2 |
| |
|
Vibrio vulnificus YJ016 (vvy) |
1 |
| |
|
Wolbachia pipientis (wpi) |
1 |
| |
|
Wolinella succinogenes (wsu) |
2 |
| |
|
Yersinia pestis Angola (ypg) |
1 |
| |
|
Yersinia pseudotuberculosis IP31758 (ypi) |
1 |
| |
|
Yersinia pestis Mediaevails (ypm) |
1 |
| |
|
Yersinia pestis Pestoides (ypp) |
1 |
| |
Spirochete |
|
8 |
| |
|
Borrelia afzelii (baf) |
1 |
| |
|
Borrelia hermsii (bhr) |
1 |
| |
|
Leptospira biflexa serovar Patoc Patoc 1 (Ames) (lbf) |
1 |
| |
|
Leptospira borgpetersenii L550 (lbl) |
1 |
| |
|
Treponema denticola (tde) |
4 |
| |
Synergistetes |
|
96 |
| |
|
Caldicellulosiruptor saccharolyticus (csc) |
81 |
| |
|
Syntrophomonas wolfei (swo) |
15 |
| |
Tenericutes |
|
6 |
| |
|
Acholeplasma laidlawii (acl) |
2 |
| |
|
Mycoplasma arthritidis (mat) |
3 |
| |
|
Mesoplasma florum (mfl) |
1 |
| |
Termite group |
|
5 |
| |
|
Uncultured Termite group 1 bacterium phylotype Rs-D17 (rsd) |
5 |
| |
Verrucomicrobia |
|
8 |
| |
|
Akkermansia muciniphila (amu) |
1 |
| |
|
Opitutus terrae (ote) |
7 |
| Eukaryotes |
|
|
29 |
| |
Animals |
|
7 |
| |
|
Brugia malayi (filaria) (bmy) |
1 |
| |
|
Danio rerio (zebrafish) (dre) |
2 |
| |
|
Ornithorhynchus anatinus (platypus) (oaa) |
2 |
| |
|
Strongylocentrotus purpuratus (purple sea urchin) (spu) |
2 |
| |
Fungi |
|
2 |
| |
|
Yarrowia lipolytica (yli) |
2 |
| |
Plants |
|
5 |
| |
|
Ostreococcus lucimarinus (olu) |
1 |
| |
|
Physcomitrella patens subsp. patens (ppp) |
4 |
| |
Protists |
|
15 |
| |
|
Cryptosporidium parvum (cpv) |
1 |
| |
|
Dictyostelium discoideum (ddi) |
1 |
| |
|
Plasmodium falciparum 3D7 (pfa) |
3 |
| |
|
Plasmodium falciparum Dd2 (pfd) |
1 |
| |
|
Tetrahymena thermophila (tet) |
2 |
| |
|
Trichomonas vaginalis (tva) |
7 |
| NULL |
|
|
211 |
| TOTAL |
|
|
3336 |
![[space]](http://compbio.ornl.gov/public/images/bluespacer.gif){kind=small}
![[space]](http://maple.lsd.ornl.gov/common/images/bluespacer.gif){kind=small}