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ATP-binding cassette, sub-family F (GCN20), member 3, mRNA (cDNA clone IMAGE:5587596) (ABCF3)
SELECTED PROTEIN SIMILARITIES
Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.
| Reference Protein | Species | Id(%) | Len(aa) |
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XP_516910.2 |
PREDICTED: ATP-binding cassette, sub-family F (GCN20), member 3 isoform 3 |
P. troglodytes |
100.0 |
708 |
|
NP_060828.2 |
ATP-binding cassette, sub-family F (GCN20), member 3 |
H. sapiens |
100.0 |
708 |
|
XP_849485.1 |
PREDICTED: similar to ATP-binding cassette, sub-family F (GCN20), member 3 isoform 2 |
C. lupus familiaris |
99.6 |
708 |
|
XP_001252189.1 |
PREDICTED: similar to ATP-binding cassette, sub-family F (GCN20), member 3 isoform 1 |
B. taurus |
99.6 |
708 |
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XP_001100584.1 |
PREDICTED: similar to ATP-binding cassette, sub-family F (GCN20), member 3 isoform 2 |
M. mulatta |
99.6 |
706 |
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NP_038880.1 |
ATP-binding cassette, sub-family F (GCN20), member 3 |
M. musculus |
98.6 |
708 |
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NP_001082556.1 |
hypothetical protein LOC398565 |
X. laevis |
86.5 |
710 |
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XP_001922895.1 |
PREDICTED: similar to ATP-binding cassette, sub-family F (GCN20), member 3 |
D. rerio |
83.9 |
273 |
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NP_649129.1 |
CG9330 CG9330-PA |
D. melanogaster |
68.8 |
707 |
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NP_498339.1 |
ABC transporter, class F family member (abcf-3) |
C. elegans |
61.7 |
707 |
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XP_323370.1 |
hypothetical protein |
N. crassa |
57.3 |
744 |
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NP_116664.1 |
Positive regulator of the Gcn2p kinase activity, forms a complex with Gcn1p; proposed to stimulate Gcn2p activation by an uncharged tRNA; Gcn20p |
S. cerevisiae |
54.0 |
751 |
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NP_176636.1 |
ATGCN3 (Arabidopsis thaliana general control non-repressible 3) |
A. thaliana |
53.0 |
704 |
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XP_001699527.1 |
flagellar associated protein |
C. reinhardtii |
47.6 |
595 |
GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
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EST Profile: | Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this] |
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GEO profiles: |
Experimental gene expression data (Gene Expression Omnibus). |
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cDNA Sources: |
brain; uncharacterized tissue; testis; mouth; placenta; kidney; lung; connective tissue; spleen; mixed; uterus; mammary gland; skin; cervix; intestine; adrenal gland; liver; bone marrow; prostate; heart; pancreas; thymus; vascular; lymph node; pituitary gland; embryonic tissue; muscle; blood; stomach; eye; trachea; bladder; esophagus; lymph; ovary; ascites; pineal gland; pharynx; bone; nerve; salivary gland; ganglia; epididymis; thyroid; parathyroid |
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
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Chromosome: |
3 |
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Map position: |
3q27.1 |
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UniSTS entry: |
Chr 3 |
A007B05 |
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UniSTS entry: |
Chr 3 |
G29218 |
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UniSTS entry: |
Chr 3 |
(n/a) |
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SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.
mRNA sequences (18)
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BC051884.1 |
Homo sapiens ATP-binding cassette, sub-family F (GCN20), member 3, mRNA (cDNA clone MGC:60284 IMAGE:5105761), complete cds |
PA |
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BC051754.2 |
Homo sapiens ATP-binding cassette, sub-family F (GCN20), member 3, mRNA (cDNA clone MGC:51850 IMAGE:6064628), complete cds |
PA |
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AK126150.1 |
Homo sapiens cDNA FLJ44162 fis, clone THYMU2033079, highly similar to Mus musculus ATP-binding cassette protein (Abcf3) |
P |
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AK002060.1 |
Homo sapiens cDNA FLJ11198 fis, clone PLACE1007697, weakly similar to GCN20 PROTEIN |
P |
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CR616374.1 |
full-length cDNA clone CS0DC012YN23 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) |
P |
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CR607850.1 |
full-length cDNA clone CL0BA005ZD12 of Placenta of Homo sapiens (human) |
P |
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CR597756.1 |
full-length cDNA clone CS0DM001YM21 of Fetal liver of Homo sapiens (human) |
P |
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NM_018358.2 |
Homo sapiens ATP-binding cassette, sub-family F (GCN20), member 3 (ABCF3), mRNA |
PA |
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AK024758.1 |
Homo sapiens cDNA: FLJ21105 fis, clone CAS05114 |
PA |
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AK027288.1 |
Homo sapiens cDNA FLJ14382 fis, clone HEMBA1001913, moderately similar to GCN20 PROTEIN |
P |
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BC009253.2 |
Homo sapiens ATP-binding cassette, sub-family F (GCN20), member 3, mRNA (cDNA clone MGC:4555 IMAGE:3028775), complete cds |
PA |
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AK290106.1 |
Homo sapiens cDNA FLJ78266 complete cds, highly similar to Homo sapiens ATP-binding cassette, sub-family F (GCN20), member 3, mRNA |
PA |
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AK097073.1 |
Homo sapiens cDNA FLJ39754 fis, clone SMINT2018353, moderately similar to GCN20 PROTEIN |
P |
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AK092415.1 |
Homo sapiens cDNA FLJ35096 fis, clone PLACE6006217, weakly similar to GCN20 PROTEIN |
P |
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AK299433.1 |
Homo sapiens cDNA FLJ57179 complete cds, highly similar to Homo sapiens ATP-binding cassette, sub-family F (GCN20), member 3 (ABCF3), mRNA |
PA |
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AK299256.1 |
Homo sapiens cDNA FLJ58418 complete cds, highly similar to Homo sapiens ATP-binding cassette, sub-family F (GCN20), member 3 (ABCF3), mRNA |
P |
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U66685.1 |
Homo sapiens clone EST201864 mRNA sequence |
P |
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BC035652.1 |
Homo sapiens ATP-binding cassette, sub-family F (GCN20), member 3, mRNA (cDNA clone IMAGE:5587596) |
PA |
EST sequences (10 of 677) [Show all sequences]
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AA862715.1 |
Clone IMAGE:1469114 |
uncharacterized tissue |
3' read |
A |
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AA969767.1 |
Clone IMAGE:1573414 |
kidney |
3' read |
A |
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AA977873.1 |
Clone IMAGE:1590354 |
kidney |
3' read |
PA |
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AA991326.1 |
Clone IMAGE:1606987 |
mammary gland |
3' read |
A |
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AI014512.1 |
Clone IMAGE:1628009 |
mixed |
3' read |
A |
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AA926731.1 |
Clone IMAGE:1542402 |
mixed |
3' read |
P |
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AI028246.1 |
Clone IMAGE:1645527 |
testis |
3' read |
A |
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AI126698.1 |
Clone IMAGE:1707729 |
heart |
3' read |
PA |
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AI129155.1 |
Clone IMAGE:1663352 |
skin |
3' read |
A |
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AI184189.1 |
Clone IMAGE:1753097 |
testis |
3' read |
A |
Key to Symbols
P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria
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