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Sample GSM305463 Query DataSets for GSM305463
Status Public on Jul 15, 2008
Title C1
Sample type RNA
 
Source Name CMPCs
Organism(s) Homo sapiens
Characteristics cardiomyocyte progenitor cells (CMPCs), ScaI+ cells isolated from human fetal heart
Extracted molecule total RNA
Extraction protocol NucleoSpin RNA II purification kit (Macherey Nagel)
Label Cy3
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description overexpressing human SM-MYOCD (smooth muscle specific myocardin isoform) also expressed upstream tiny ORF
Data processing Raw data normalized using global variance stabilization normalization (VSN)
 
Submission date Jul 14, 2008
Contact name John van Tuyn
E-mail(s) J.van_tuyn@lumc.nl
Organization name Leiden university Medical Center
Department Cardiology
Street address Albinusdreef 2
City Leiden
ZIP/Postal code 2333ZA
Country Netherlands
 
Platform ID GPL6104
Series (1)
GSE12110 Gene expression profiling of overexpression of myocardin

Data table header descriptions
ID_REF
VALUE Raw data normalized using global variance stabilization normalization (VSN)
Raw Signal
Detection Pval
BEAD_STDEV
Avg_NBEADS

Data table
ID_REF VALUE Raw Signal Detection Pval BEAD_STDEV Avg_NBEADS
ILMN_1804663 202.2887244 296.7039 0.001412429 21.41624 42
ILMN_1651799 4547.34725 4382.594 0 414.6214 52
ILMN_1782558 7.129806142 95.54905 0.9067796 3.571644 51
ILMN_1812262 761.9054408 823.3359 0 21.19844 48
ILMN_1712803 64.41223507 165.6895 0.01412429 12.03878 32
ILMN_1774757 49.29974719 150.8593 0.0240113 5.592976 34
ILMN_1712730 72.06662031 173.1015 0.01129944 9.172647 35
ILMN_1813561 8.68343136 100.2857 0.8022599 2.216786 39
ILMN_1761511 15.15434759 112.7891 0.4477401 3.30683 53
ILMN_1815941 1276.892822 1307.602 0 43.60783 45
ILMN_1711451 20.07276551 119.5242 0.2980226 5.07156 27
ILMN_1728255 15.94525512 113.96 0.4081921 4.065906 47
ILMN_1723582 28.43115366 129.2948 0.1524955 5.248382 43
ILMN_1796374 76.94546325 177.8035 0.009887005 7.458559 45
ILMN_1713272 10.8903888 105.4073 0.6355932 4.632987 29
ILMN_1674380 724.5825843 788.2357 0 33.71848 39
ILMN_1660582 229.9423889 322.7818 0.001412429 12.68955 41
ILMN_1717492 30.06307856 131.0784 0.1299435 4.877237 49
ILMN_1811370 100.7213023 200.5583 0.009887005 12.55751 51
ILMN_1652243 33.85038168 135.1251 0.1002825 3.872615 48

Total number of rows: 20589

Table truncated, full table size 1086 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table

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