External Resources
No endorsement is made or implied by inclusion here. Organisms listed may not be related to Genomics:GTL work.
Bacteria
Actinobacillus
- Actinobacillus actinomycetemcomitans Strain HK1651 Genome Sequencing
- Comprehensive Microbial Resource: from TIGR
- University of Oklahoma Advanced Center for Genome Technology
Agrobacterium
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
- Summary of A. tumefaciens, Strain C58, version 6.5: genome and metabolic pathways predicted by PathoLogic
Anabaena
- Comprehensive Microbial Resource: from TIGR
Anaeromyxobacter
- Anaeromyxobacter dehalogenans 2CP-C from JGI Microbial Genomics
- Comprehensive Microbial Resource: from TIGR
Aquifex
Archaeoglobus
- Archaeoglobus fulgidus TIGR Database: The Institute for Genomic Research
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
Azotobacter
- Comprehensive Microbial Resource: from TIGR
Bacillus
- Bacillus stearothermophilus Strain 10 Genome Sequencing
- BioCyc: collection of Pathway/Genome Databases
- Comprehensive Microbial Resource: from TIGR
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
- NRSub, a non-redundant database of Bacillus subtilis France
- SubtiList: Bacillus subtilis
- University of Oklahoma Advanced Center for Genome Technology
Bacteria (General)
- Vibrio harveyi (bioluminescent salt water bacterium): Washington University Sequencing Center
- ABIM Organism Databases: links to many different databases
- Ancient bacteria at hydrothermal vent sites
- Bacteria: from NCBI Taxonomy Browser
- Common Access to Biological Resources and Information (CABRI)
- Comprehensive Microbial Resource: from TIGR
- Computational Molecular Biology At NIH
- Entrez Genome: NCBI: Squenced and unfinished genomes, including viruses, bacteria, archaea, and eukaryotes.
- GeneDB: multiorganism database housing fungi, protozoa, bacterial and vector genomes
- Genetics from Google
- Genoscope Projects: Microbes Sequenced
- GOLD[TM] Genomes OnLine Database: monitors genome sequencing projects
- Institute for Genomic Research (TIGR) is now J. Craig Venter Institute
- Micado: MICrobial Advanced Database Organisation: (formerly MadBase)
- Microbes.info: Microbiology Microbes Bacteria Information and Links
- MicrobesOnline: facilitates multi-species comparison
- NIH Genome Sequencing Proposals (2005)
- Organelle Evolution and Genomics
- Quick Guide to Sequenced Genomes: Sequenced genome projects from the Genome News Network.
- The Gene Index: Plants, animals, fungi, protist
- The SEED: an Annotation/Analysis Tool
- tmRNA Website: bacterial tmRNA
Bacteroides
- Bacteroides fragilis Sequencing Project
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
Bdellovibrio
Bifidobacterium
Bordetella
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
- Sequencing Project: Bordetella pertussis, B. parapertussis and B. bronchiseptica
Borrelia
- Borrelia burgdorferi: BNL Genome Sequencing Group
- Borrelia burgdorferi TIGR Database: The Institute for Genomic Research
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
Bradyrhizobium
- Comprehensive Microbial Resource: from TIGR
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
Brevibacillus
Brucella
Buchnera
Burkholderia
Campylobacter
- Campylobacter jejuni Sequencing Project
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
Candidatus
Caulobacter
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
- Summary of Cb. crescentus, Strain CB15, version 6.5: genome and metabolic pathways predicted by PathoLogic
Chlamydia
- Chlamydia pneumoniae Genome Database: from TIGR
- Chlamydia trachomatis Genome Database: from TIGR
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
Chlamydophila
Chlorobium
Chromobacterium
Clostridium
- Clostridium difficile Sequencing Project
- Clostridium BC1 Sequencing at Brookhaven National Laboratory
- Comprehensive Microbial Resource: from TIGR
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
Corynebacterium
- Corynebacterium diphtheriae Sequencing Project
- Corynebacterium efficiens YS-314: DOGAN, a genome database of microorganisms sequenced at NITE
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
Coxiella
Cyanobacteria
Dechloromonas
- Comprehensive Microbial Resource: from TIGR
Dehalococcoides
- Comprehensive Microbial Resource: from TIGR
Deinococcus
- Deinococcus radiodurans Genome Database: from TIGR
- Comprehensive Microbial Resource: from TIGR
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
Desulfitobacterium
- Comprehensive Microbial Resource: from TIGR
Desulfovibrio
Ehrlichia
- Comprehensive Microbial Resource: from TIGR
Enterococcus
- Comprehensive Microbial Resource: from TIGR
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
Escherichia coli
- Escherichia coli: from NCBI Taxonomy Browser
- Escherichia coli (E. coli) Genetic Stock Center
- Escherichia coli Genome Project: University of Wisconsin
- coliBASE, an online database for E. coli, Salmonella and Shigella
- Comprehensive Microbial Resource: from TIGR
- EcoCyc: Encyclopedia of Escherichia coli Genes and Metabolism
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
- Summary of E. coli O157:H7, Strain EDL933, serotype O157:H7, version 8.0: genome and metabolic pathways predicted by PathoLogic
- University of Wisconsin Laboratory of Genetics
- WWW Virtual Library: E. coli Index
Francisella
- Comprehensive Microbial Resource: from TIGR
Frankia
Fusobacterium
Geobacter
- Comprehensive Microbial Resource: from TIGR
- Geobacter Project: University of Massachusetts, Amherst
- Microbial Genomes from NCBI
Haemophilus
- Haemophilus influenzae TIGR Database: The Institute for Genomic Research
- BioCyc: collection of Pathway/Genome Databases
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
Helicobacter
- Helicobacter pylori TIGR database: The Institute for Genomic Research
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
- Nature article "First set of bacterial proteins mapped"
- Summary of Hb. pylori, Strain 26695, version 6.5: genome and metabolic pathways predicted by PathoLogic
Klebsiella
- Comprehensive Microbial Resource: from TIGR
Lactobacillus
- Lactobacillus bulgaricus - Complete genome sequencing: Genoscope
- Comprehensive Microbial Resource: from TIGR
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
Lactococcus
- Lactococcus lactis - Complete genome sequencing: Genoscope
- Comprehensive Microbial Resource: from TIGR
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
Legionella
- Legionella pneumophila
- Comprehensive Microbial Resource: from TIGR
- Genoscope Projects: Microbes Sequenced
Leptosphaeria
- Leptosphaeria maculans - Sequencing of a genomic region involved in host specificity: Genoscope
- Comprehensive Microbial Resource: from TIGR
- Genoscope Projects: Fungi Sequenced
- Microbial Genomes from NCBI
Magnetococcus (Magnetococcus)
- Comprehensive Microbial Resource: from TIGR
Magnetospirillum
- Comprehensive Microbial Resource: from TIGR
Marinobacter
Mesoplasma
- Broad Institute: fulfulling the promise of genetics for medicine
- Comprehensive Microbial Resource: from TIGR
Mesorhizobium
Methanospirillum
- Comprehensive Microbial Resource: from TIGR
Methylobium
Methylococcus
- Comprehensive Microbial Resource: from TIGR
Moorella
- Comprehensive Microbial Resource: from TIGR
Mycobacterium
- Mycobacterium bovis Sequencing Project
- Mycobacterium leprae Sequencing Project
- Mycobacterium tuberculosis
- Mycobacterium tuberculosis Genome Database: from TIGR
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
- Summary of Mb. tuberculosis CDC1551, Strain CDC1551, version 6.5: genome and metabolic pathways predicted by PathoLogic
- Summary of Mb. tuberculosis H37Rv, Strain H37Rv, version 6.5: genome and metabolic pathways predicted by PathoLogic
Mycoplasma
- Mycoplasma genitalium TIGR database: The Institute for Genomic Research
- Mycoplasma pneumoniae
- Mycoplasma pulmonis - Complete genome sequencing: Genoscope
- BioCyc: collection of Pathway/Genome Databases
- Broad Institute: fulfulling the promise of genetics for medicine
- Comprehensive Microbial Resource: from TIGR
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
Neisseria
- Neisseria gonorrhoeae Genome Sequencing: University of Oklahoma
- Neisseria meningitidis Genome Database: from TIGR
- Neisseria meningitidis Sequencing Project
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
Nitrobacter
- Comprehensive Microbial Resource: from TIGR
Nitrosococcus
- Comprehensive Microbial Resource: from TIGR
Nitrosomonas
Nitrosospira
- Comprehensive Microbial Resource: from TIGR
Nocardioides
- Comprehensive Microbial Resource: from TIGR
Nostoc
Novosphingobium
- Comprehensive Microbial Resource: from TIGR
Oceanobacillus
Parachlamydia
Pasteurella
Pelobacter
- Comprehensive Microbial Resource: from TIGR
Pelodictyon
- Comprehensive Microbial Resource: from TIGR
Photorhabdus
Pirellula
Porphyromonas
Prochlorococcus
- Comprehensive Microbial Resource: from TIGR
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
- Nature web focus: Ocean Genomics
Pseudoalteromonas
- Comprehensive Microbial Resource: from TIGR
Pseudomonas
- Pseudomonas fluorescens PfO-1 from JGI Microbial Genomics
- Pseudomonas Genome Project
- Comprehensive Microbial Resource: from TIGR
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
- PseudoCyc pathway/genome database for Pseudomonas aeruginosa PAO1
Psychrobacter
- Comprehensive Microbial Resource: from TIGR
Ralstonia
- Ralstonia solanacearum - Complete genome sequencing: Genoscope
- Comprehensive Microbial Resource: from TIGR
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
- Ralstonia metallidurans Sequencing at Brookhaven National Laboratory
Rhizobium
Rhodobacter
- Rhodobacter sphaeroides genome project: University of Texas - Houston Health Science Center
- Rhodobacter Research: F. Robert Tabita Laboratory
- BACTER Institute: Bringing Advanced Computational Techniques to Environmental Research (BACTER)
- Comprehensive Microbial Resource: from TIGR
Rhodoferax
- Comprehensive Microbial Resource: from TIGR
Rhodopseudomonas
- Rhodopseudomonas palustris complete genome sequence and annotation
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
Rhodospirillum
- Comprehensive Microbial Resource: from TIGR
Rickettsia
- Rickettsia conorii - Complete genome sequencing: Genoscope
- Comprehensive Microbial Resource: from TIGR
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
Saccharophagus
- Comprehensive Microbial Resource: from TIGR
Salmonella
- Salmonella typhi: University of Wisconsin Genome Project Bacterial Pathogens Genome Initiative
- Salmonella typhi Sequencing Project
- coliBASE, an online database for E. coli, Salmonella and Shigella
- Comprehensive Microbial Resource: from TIGR
- Latest Salmonella News
- Microbial Genomes from NCBI
Shewanella
- BACTER Institute: Bringing Advanced Computational Techniques to Environmental Research (BACTER)
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
- Shewanella Federation: Consortium formed to characterize and model the biology of Shewanella oneidensis MR-1
Shigella
- Shigella flexneri: University of Wisconsin Genome Project Bacterial Pathogens Genome Initiative
- coliBASE, an online database for E. coli, Salmonella and Shigella
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
- Summary of S. flexneri, Strain 2457T, Serotype 2a, version 8.0: genome and metabolic pathways predicted by PathoLogic
Silicibacter
- Comprehensive Microbial Resource: from TIGR
Sinorhizobium
Staphylococcus
- Staphylococcus aureus MW2: DOGAN, a genome database of microorganisms sequenced at NITE
- Staphylococcus aureus N315: DOGAN, a genome database of microorganisms sequenced at NITE
- Staphylococcus aureus NCTC 8325 Genome Sequencing
- Staphylococcus aureus Sequencing Project
- Comprehensive Microbial Resource: from TIGR
- DOGAN (Database Of Genomes Analyzed in NITE)
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
- University of Oklahoma Advanced Center for Genome Technology
Streptococcus
- Streptococcus equi Sequencing Project
- Streptococcus mutans strain UA159 Genome Sequencing
- Streptococcus pyogenes Genome Sequencing: University of Oklahoma
- Streptococcus pyogenesi Sequencing Project
- Streptococcus thermophilus
- Comprehensive Microbial Resource: from TIGR
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
- University of Oklahoma Advanced Center for Genome Technology
Streptomyces
- Steptomyces ambofaciens - Partial sequencing of the linear chromosome: Genoscope
- Streptomyces coelicolor Sequencing Project
- Comprehensive Microbial Resource: from TIGR
- DOGAN (Database Of Genomes Analyzed in NITE)
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
Synechococcus
- Comprehensive Microbial Resource: from TIGR
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
- SNL/ORNL Genomes to Life Project: Carbon Sequestration in Synechococcus sp. From Molecular Machines to Hierarchical Modeling
- Synechococcus sp. WH8102 Knowledgebase
Synechocystis
- Comprehensive Microbial Resource: from TIGR
- CyanoBase Synechocystis sp. PCC 6803
- Microbial Genomes from NCBI
- Synechocystis sp. PCC 6803
Thermoanaerobacter
Thermobifida
- Comprehensive Microbial Resource: from TIGR
Thermosynechococcus
Thermotoga
- Thermotoga maritima Genome Database: from TIGR
- Biologically Derived Hydrogen--Future Fuel?: article from The Scientist, Apr. 21, 2003
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
Thermus
Thiobacillus
- Comprehensive Microbial Resource: from TIGR
Thiomicrospira
- Comprehensive Microbial Resource: from TIGR
Treponema
- Treponema pallidum Genome Database: from TIGR
- BioCyc: collection of Pathway/Genome Databases
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
Tropheryma
- Comprehensive Microbial Resource: from TIGR
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
Ureaplasma
Vibrio
- Vibrio cholerae Genome Database: from TIGR
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
- Summary of V. cholerae, Strain N16961, version 6.5: genome and metabolic pathways predicted by PathoLogic
Wolinella
Xanthomonas
- Comprehensive Microbial Resource: from TIGR
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
Xylella
Yersinia
- Yersinia enterocolitica Sequencing Project
- Yersinia pestis: University of Wisconsin Genome Project Bacterial Pathogens Genome Initiative
- Yersinia pestis Sequencing Project
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
Links Updated 08-Feb-09
