Other Microbial Research Projects
Includes research world-wide, some of which is funded by U.S. Department of Energy. List provided by the Virtual Library on Genetics.
Archaea - Bacteria - Fungi - General Microbial and Microbial Communities - Nematode and Worm - Parasite - Protozoa - Virus - Yeast
Bacteria
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Actinobacillus
- Actinobacillus actinomycetemcomitans Strain HK1651 Genome Sequencing
- Actinobacillus succinogenes 130Z from JGI Microbial Genomics
- Comprehensive Microbial Resource: from TIGR
- University of Oklahoma Advanced Center for Genome Technology
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
- Summary of A. tumefaciens, Strain C58, version 6.5: genome and metabolic pathways predicted by PathoLogic
- Anabaena variabilis ATTCC 29413 from JGI Microbial Genomics
- Comprehensive Microbial Resource: from TIGR
- Anaeromyxobacter dehalogenans 2CP-C from JGI Microbial Genomics
- Comprehensive Microbial Resource: from TIGR
- Anthrax on healthfinder®
- Anthrax: pre-publication and special issue from Nature: this issue freely available
- New York Times article: "Genome Offers 'Fingerprint' for Anthrax"
- NORD disease reports - Anthrax, Smallpox, Botulism and Bubonic Plague
- Science Magazine article: "Taking Anthrax's Genetic Fingerprints"
- Archaeoglobus fulgidus TIGR Database: The Institute for Genomic Research
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
- Bacillus cereus NVH391-98 from JGI Microbial Genomics
- Bacillus stearothermophilus Strain 10 Genome Sequencing
- BioCyc: collection of Pathway/Genome Databases
- Comprehensive Microbial Resource: from TIGR
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
- NRSub, a non-redundant database of Bacillus subtilis France
- SubtiList: Bacillus subtilis
- University of Oklahoma Advanced Center for Genome Technology
- Vibrio harveyi (bioluminescent salt water bacterium): Washington University Sequencing Center
- ABIM Organism Databases: links to many different databases
- Ancient bacteria at hydrothermal vent sites
- Bacteria: from NCBI Taxonomy Browser
- Common Access to Biological Resources and Information (CABRI)
- Comprehensive Microbial Resource: from TIGR
- Computational Molecular Biology At NIH
- Entrez Genome: NCBI: Squenced and unfinished genomes, including viruses, bacteria, archaea, and eukaryotes.
- GeneDB: multiorganism database housing fungi, protozoa, bacterial and vector genomes
- Genetics from Google
- Genoscope Projects: Microbes Sequenced
- GOLD[TM] Genomes OnLine Database: monitors genome sequencing projects
- Institute for Genomic Research (TIGR) is now J. Craig Venter Institute
- Micado: MICrobial Advanced Database Organisation: (formerly MadBase)
- Microbes.info: Microbiology Microbes Bacteria Information and Links
- MicrobesOnline: facilitates multi-species comparison
- NIH Genome Sequencing Proposals (2005)
- Organelle Evolution and Genomics
- Quick Guide to Sequenced Genomes: Sequenced genome projects from the Genome News Network.
- The Gene Index: Plants, animals, fungi, protist
- The SEED: an Annotation/Analysis Tool
- tmRNA Website: bacterial tmRNA
- Bacteroides fragilis Sequencing Project
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
- Bifidobacterium longum DJO10A from JGI Microbial Genomics
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
- Sequencing Project: Bordetella pertussis, B. parapertussis and B. bronchiseptica
- Borrelia burgdorferi: BNL Genome Sequencing Group
- Borrelia burgdorferi TIGR Database: The Institute for Genomic Research
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
- Bradyrhizobium sp. BTAi1 from JGI Microbial Genomics
- Comprehensive Microbial Resource: from TIGR
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
- Burkholderia ambifaria AMMD from JGI Microbial Genomics
- Burkholderia cenocepacia AU 1054 from JGI Microbial Genomics
- Burkholderia cenocepacia HI2424 from JGI Microbial Genomics
- Burkholderia pseudomallei Sequencing Project
- Burkholderia sp. 383 from JGI Microbial Genomics
- Burkholderia vietnamiensis G4 from JGI Microbial Genomics
- Burkholderia xenovorans LB400 from JGI Microbial Genomics
- Comprehensive Microbial Resource: from TIGR
- Campylobacter jejuni Sequencing Project
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
- Summary of Cb. crescentus, Strain CB15, version 6.5: genome and metabolic pathways predicted by PathoLogic
- Chlamydia pneumoniae Genome Database: from TIGR
- Chlamydia trachomatis Genome Database: from TIGR
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
- Chlorobium chlorochromatii CaD3 from JGI Microbial Genomics
- Chlorobium limicola DSM 245 from JGI Microbial Genomics
- Chlorobium phaeobacteroides BS1 from JGI Microbial Genomics
- Chlorobium phaeobacteroides DSM 266 from JGI Microbial Genomics
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
- Clostridium beijerincki NCIMB 8052 from JGI Microbial Genomics
- Clostridium difficile Sequencing Project
- Clostridium thermocellum ATCC 27405 from JGI Microbial Genomics
- Clostridium BC1 Sequencing at Brookhaven National Laboratory
- Comprehensive Microbial Resource: from TIGR
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
- Corynebacterium diphtheriae Sequencing Project
- Corynebacterium efficiens YS-314: DOGAN, a genome database of microorganisms sequenced at NITE
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
- Comprehensive Microbial Resource: from TIGR
- Deinococcus geothermalis DSM 11300 from JGI Microbial Genomics
- Deinococcus radiodurans Genome Database: from TIGR
- Comprehensive Microbial Resource: from TIGR
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
- Desulfitobacterium halfniense DCB-2 from JGI Microbial Genomics
- Comprehensive Microbial Resource: from TIGR
- Desulfovibrio desulfuricans G20 from JGI Microbial Genomics
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
- Ehrlichia canis Jake from JGI Microbial Genomics
- Ehrlichia chaffeensis Sapulpa from JGI Microbial Genomics
- Comprehensive Microbial Resource: from TIGR
- Enterococcus faecium DO from JGI Microbial Genomics
- Comprehensive Microbial Resource: from TIGR
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
- Escherichia coli: from NCBI Taxonomy Browser
- Escherichia coli (E. coli) Genetic Stock Center
- Escherichia coli Genome Project: University of Wisconsin
- coliBASE, an online database for E. coli, Salmonella and Shigella
- Comprehensive Microbial Resource: from TIGR
- EcoCyc: Encyclopedia of Escherichia coli Genes and Metabolism
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
- Summary of E. coli O157:H7, Strain EDL933, serotype O157:H7, version 8.0: genome and metabolic pathways predicted by PathoLogic
- University of Wisconsin Laboratory of Genetics
- WWW Virtual Library: E. coli Index
- Comprehensive Microbial Resource: from TIGR
- Frankia sp. CcI3 from JGI Microbial Genomics
- Frankia sp. EAN1pec from JGI Microbial Genomics
- Comprehensive Microbial Resource: from TIGR
- Genoscope Projects: Microbes Sequenced
- Geobacter metallireducens GS-15 from JGI Microbial Genomics
- Comprehensive Microbial Resource: from TIGR
- Geobacter Project: University of Massachusetts, Amherst
- Microbial Genomes from NCBI
- Haemophilus influenzae TIGR Database: The Institute for Genomic Research
- Haemophilus somnus 129PT from JGI Microbial Genomics
- BioCyc: collection of Pathway/Genome Databases
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
- Helicobacter pylori TIGR database: The Institute for Genomic Research
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
- Nature article "First set of bacterial proteins mapped"
- Summary of Hb. pylori, Strain 26695, version 6.5: genome and metabolic pathways predicted by PathoLogic
- Comprehensive Microbial Resource: from TIGR
- Lactobacillus brevis ATCC 367 from JGI Microbial Genomics
- Lactobacillus bulgaricus - Complete genome sequencing: Genoscope
- Lactobacillus casei ATCC 334 from JGI Microbial Genomics
- Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 from JGI Microbial Genomics
- Lactobacillus gasseri ATCC 33323 from JGI Microbial Genomics
- Comprehensive Microbial Resource: from TIGR
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
- Lactococcus lactis subsp. cremoris SK11 from JGI Microbial Genomics
- Lactococcus lactis - Complete genome sequencing: Genoscope
- Comprehensive Microbial Resource: from TIGR
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
- Legionella pneumophila
- Comprehensive Microbial Resource: from TIGR
- Genoscope Projects: Microbes Sequenced
- Leptosphaeria maculans - Sequencing of a genomic region involved in host specificity: Genoscope
- Comprehensive Microbial Resource: from TIGR
- Genoscope Projects: Fungi Sequenced
- Microbial Genomes from NCBI
- Magnetospirillum magnetotacticum MS-1 from JGI Microbial Genomics
- Comprehensive Microbial Resource: from TIGR
- Broad Institute: fulfulling the promise of genetics for medicine
- Comprehensive Microbial Resource: from TIGR
- Mesorhizobium sp. BNC1 from JGI Microbial Genomics
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
- Methanospirillum hungatei JF1 from JGI Microbial Genomics
- Comprehensive Microbial Resource: from TIGR
- Comprehensive Microbial Resource: from TIGR
- Moorella thermoacetica ATCC 39073 from JGI Microbial Genomics
- Comprehensive Microbial Resource: from TIGR
- Mycobacterium bovis Sequencing Project
- Mycobacterium leprae Sequencing Project
- Mycobacterium tuberculosis
- Mycobacterium tuberculosis Genome Database: from TIGR
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
- Summary of Mb. tuberculosis CDC1551, Strain CDC1551, version 6.5: genome and metabolic pathways predicted by PathoLogic
- Summary of Mb. tuberculosis H37Rv, Strain H37Rv, version 6.5: genome and metabolic pathways predicted by PathoLogic
- Mycoplasma genitalium TIGR database: The Institute for Genomic Research
- Mycoplasma pneumoniae
- Mycoplasma pulmonis - Complete genome sequencing: Genoscope
- BioCyc: collection of Pathway/Genome Databases
- Broad Institute: fulfulling the promise of genetics for medicine
- Comprehensive Microbial Resource: from TIGR
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
- Neisseria gonorrhoeae Genome Sequencing: University of Oklahoma
- Neisseria meningitidis Genome Database: from TIGR
- Neisseria meningitidis Sequencing Project
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
- Nitrobacter hamburgensis X14 from JGI Microbial Genomics
- Nitrobacter winogradskyi Nb-255 from JGI Microbial Genomics
- Comprehensive Microbial Resource: from TIGR
- Nitrosococcus oceani ATCC 19707 from JGI Microbial Genomics
- Comprehensive Microbial Resource: from TIGR
- Nitrosomonas europaea ATCC 19718 from JGI Microbial Genomics
- Nitrosomonas eutropha C71 from JGI Microbial Genomics
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
- Nitrosospira multiformis ATCC 25196 from JGI Microbial Genomics
- Comprehensive Microbial Resource: from TIGR
- Nostoc punctiforme PCC 73102 from JGI Microbial Genomics
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
- Novosphingobium aromaticivorans DSM 12444 from JGI Microbial Genomics
- Comprehensive Microbial Resource: from TIGR
- Pelobacter carbinolicus from JGI Microbial Genomics
- Pelobacter propionicus from JGI Microbial Genomics
- Comprehensive Microbial Resource: from TIGR
- Pelodictyon luteolum DSM 273 from JGI Microbial Genomics
- Pelodictyon phaeoclathratiforme BU-1 from JGI Microbial Genomics
- Comprehensive Microbial Resource: from TIGR
- Prochlorococcus marinus MIT 9313 from JGI Microbial Genomics
- Prochlorococcus marinus subsp. pastoris CCMP1986 from JGI Microbial Genomics
- Prochlorococcus sp. MIT 9312 from JGI Microbial Genomics
- Prochlorococcus sp. NATL2A from JGI Microbial Genomics
- Comprehensive Microbial Resource: from TIGR
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
- Nature web focus: Ocean Genomics
- Prosthecochloris aestuarii DSM 271 from JGI Microbial Genomics
- Prosthecochloris vibrioformis DSM 265 from JGI Microbial Genomics
- Pseudoalteromonas atlantica T6c from JGI Microbial Genomics
- Comprehensive Microbial Resource: from TIGR
- Pseudomonas fluorescens PfO-1 from JGI Microbial Genomics
- Pseudomonas putida F1 from JGI Microbial Genomics
- Pseudomonas syringae pv. syringae B728a from JGI Microbial Genomics
- Pseudomonas Genome Project
- Comprehensive Microbial Resource: from TIGR
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
- PseudoCyc pathway/genome database for Pseudomonas aeruginosa PAO1
- Psychrobacter arcticus 273-4 from JGI Microbial Genomics
- Psychrobacter cryohalolentis K5 from JGI Microbial Genomics
- Comprehensive Microbial Resource: from TIGR
- Ralstonia eutropha JMP134 from JGI Microbial Genomics
- Ralstonia metallidurans CH34 from JGI Microbial Genomics
- Ralstonia solanacearum - Complete genome sequencing: Genoscope
- Comprehensive Microbial Resource: from TIGR
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
- Ralstonia metallidurans Sequencing at Brookhaven National Laboratory
- Rhodobacter sphaeroides 2.4.1 from JGI Microbial Genomics
- Rhodobacter sphaeroides ATCC 17025 from JGI Microbial Genomics
- Rhodobacter sphaeroides ATCC 17029 from JGI Microbial Genomics
- Rhodobacter sphaeroides genome project: University of Texas - Houston Health Science Center
- Rhodobacter Research: F. Robert Tabita Laboratory
- BACTER Institute: Bringing Advanced Computational Techniques to Environmental Research (BACTER)
- Comprehensive Microbial Resource: from TIGR
- Rhodoferax ferrireducens DSM 15236 from JGI Microbial Genomics
- Comprehensive Microbial Resource: from TIGR
- Rhodopseudomonas palustris BisA53 from JGI Microbial Genomics
- Rhodopseudomonas palustris BisB18 from JGI Microbial Genomics
- Rhodopseudomonas palustris BisB5 from JGI Microbial Genomics
- Rhodopseudomonas palustris CGA009 from JGI Microbial Genomics
- Rhodopseudomonas palustris HaA29 from JGI Microbial Genomics
- Rhodopseudomonas palustris complete genome sequence and annotation
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
- Rhodospirillum rubrum ATCC 11170 from JGI Microbial Genomics
- Comprehensive Microbial Resource: from TIGR
- Rickettsia conorii - Complete genome sequencing: Genoscope
- Comprehensive Microbial Resource: from TIGR
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
- Saccharophagus degradans 2-40 from JGI Microbial Genomics
- Comprehensive Microbial Resource: from TIGR
- Salmonella enterica serovar Paratyphi B: Washington University Sequencing Center
- Salmonella typhi: University of Wisconsin Genome Project Bacterial Pathogens Genome Initiative
- Salmonella typhi Sequencing Project
- coliBASE, an online database for E. coli, Salmonella and Shigella
- Comprehensive Microbial Resource: from TIGR
- Latest Salmonella News
- Microbial Genomes from NCBI
- Shewanella amazonensis SB2B from JGI Microbial Genomics
- Shewanella baltica OS155 from JGI Microbial Genomics
- Shewanella denitrificans OS217 from JGI Microbial Genomics
- Shewanella frigidimarina NCIMB 400 from JGI Microbial Genomics
- Shewanella putrefaciens CN-32 from JGI Microbial Genomics
- Shewanella sp. ANA-3 from JGI Microbial Genomics
- Shewanella sp. MR-4 from JGI Microbial Genomics
- Shewanella sp. MR-7 from JGI Microbial Genomics
- Shewanella sp. PV-4 from JGI Microbial Genomics
- Shewanella sp. W3-18-1 from JGI Microbial Genomics
- BACTER Institute: Bringing Advanced Computational Techniques to Environmental Research (BACTER)
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
- Shewanella Federation: Consortium formed to characterize and model the biology of Shewanella oneidensis MR-1
- Shigella flexneri: University of Wisconsin Genome Project Bacterial Pathogens Genome Initiative
- coliBASE, an online database for E. coli, Salmonella and Shigella
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
- Summary of S. flexneri, Strain 2457T, Serotype 2a, version 8.0: genome and metabolic pathways predicted by PathoLogic
- Staphylococcus aureus MW2: DOGAN, a genome database of microorganisms sequenced at NITE
- Staphylococcus aureus N315: DOGAN, a genome database of microorganisms sequenced at NITE
- Staphylococcus aureus NCTC 8325 Genome Sequencing
- Staphylococcus aureus Sequencing Project
- Comprehensive Microbial Resource: from TIGR
- DOGAN (Database Of Genomes Analyzed in NITE)
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
- University of Oklahoma Advanced Center for Genome Technology
- Streptococcus equi Sequencing Project
- Streptococcus mutans strain UA159 Genome Sequencing
- Streptococcus pyogenes Genome Sequencing: University of Oklahoma
- Streptococcus pyogenesi Sequencing Project
- Streptococcus suis 89/1591 from JGI Microbial Genomics
- Streptococcus thermophilus LMD-9 from JGI Microbial Genomics
- Streptococcus thermophilus
- Comprehensive Microbial Resource: from TIGR
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
- University of Oklahoma Advanced Center for Genome Technology
- Steptomyces ambofaciens - Partial sequencing of the linear chromosome: Genoscope
- Streptomyces coelicolor Sequencing Project
- Comprehensive Microbial Resource: from TIGR
- DOGAN (Database Of Genomes Analyzed in NITE)
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
- Synechococcus sp. CC9605 from JGI Microbial Genomics
- Synechococcus sp. CC9902 from JGI Microbial Genomics
- Synechococcus sp. PCC 7942 from JGI Microbial Genomics
- Synechococcus sp. WH8102 from JGI Microbial Genomics
- Comprehensive Microbial Resource: from TIGR
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
- SNL/ORNL Genomes to Life Project: Carbon Sequestration in Synechococcus sp. From Molecular Machines to Hierarchical Modeling
- Synechococcus sp. WH8102 Knowledgebase
- Comprehensive Microbial Resource: from TIGR
- CyanoBase Synechocystis sp. PCC 6803
- Microbial Genomes from NCBI
- Synechocystis sp. PCC 6803
- Thermoanaerobacter ethanolicus 39E from JGI Microbial Genomics
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
- Thermotoga maritima Genome Database: from TIGR
- Biologically Derived Hydrogen--Future Fuel?: article from The Scientist, Apr. 21, 2003
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
- Thiobacillus denitrificans ATCC 25259 from JGI Microbial Genomics
- Comprehensive Microbial Resource: from TIGR
- Thiomicrospira crunogena XCL-2 from JGI Microbial Genomics
- Thiomicrospira denitrificans ATCC 33889 from JGI Microbial Genomics
- Comprehensive Microbial Resource: from TIGR
- Treponema pallidum Genome Database: from TIGR
- BioCyc: collection of Pathway/Genome Databases
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
- Comprehensive Microbial Resource: from TIGR
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
- Vibrio cholerae Genome Database: from TIGR
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
- Summary of V. cholerae, Strain N16961, version 6.5: genome and metabolic pathways predicted by PathoLogic
- Comprehensive Microbial Resource: from TIGR
- Genoscope Projects: Microbes Sequenced
- Microbial Genomes from NCBI
- Xylella fastidiosa Ann-1 from JGI Microbial Genomics
- Xylella fastidiosa Dixon from JGI Microbial Genomics
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
- Yersinia enterocolitica Sequencing Project
- Yersinia pestis: University of Wisconsin Genome Project Bacterial Pathogens Genome Initiative
- Yersinia pestis Sequencing Project
- Comprehensive Microbial Resource: from TIGR
- Microbial Genomes from NCBI
Updated 08-Feb-09
