prokMSA_id: 74465
prokMSAname: Actinobacillus succinogenes str. CCUG 28028
GenBank ACCESSION: AF224303.1
GenBank GI: 8489226
Pubmed/Medline:
RDP_id: S000389449
NCBI_tax_id: 67854
Study_id: 18042
Chimera Test Result
bellerophon=checked, not chimeric
bel3_div_ratio=
G2_chip_tax_string=NA
Hugenholtz_tax_string=Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellaceae
Ludwig_tax_string=prokaryotes; Bacteria; Beta_gamma_proteo; Gammaproteobacteria_1; Pasteurellales et rel.; Pasteurellales
Pace_tax_string=Bacteria; Proteobacteria; Alpha-, Beta, Gamma proteobact; Gamma(beta)proteobacteria; Gamma proteobacteria A; Enterobacteriaceae, Pasteurell; Pasteurellales
RDP_tax_string=Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Pasteurella
ncbi_tax_string=Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Actinobacillus
authors(alphabetically)=Busse,H.-J., Dewhirst,F.E., Olsen,I., Paster,B.J.
blast_perc_ident_to_template=84.7
chi_checked=1
contact_info=Molecular Genetics, The Forsyth Institute, 140 Fenway, Boston, MA 02115, USA
create_date=13-JUN-2000
decision=named_isolate
description=Pasteurella sp. CCUG 28028 16S ribosomal RNA gene, partial sequence
journal=(in) Brenner,D.J., Krieg,N.R., Staley,J.T. and Garrity,G.M. (Eds.); BERGEY'S MANUAL OF SYSTEMATIC BACTERIOLOGY; (2001) In press
longest_insertion=2
ncbi_acc=AF224303
non_ACGT_count=1
non_ACGT_percent=0.0653
organism=Actinobacillus succinogenes
perc_ident_to_invariant_core=99.2
prokMSA_id=74465
prokMSAname=Actinobacillus succinogenes str. CCUG 28028
small_gap_intrusions=2
source=Actinobacillus succinogenes
span_aligned=2..1531
strain=CCUG 28028
submit_date=13-JAN-2000
template=8201
timestamp=20060407135635
title=Family Pasteurellaceae POHL 1981, 382VP
unaligned_length=1530
update_date=13-JUN-2000
>Actinobacillus succinogenes str. CCUG 28028 prokMSA_id:74465 AF224303.1
TGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCTTAACAC
ATGCAAGTCGAACGGTAGCGGATGAAAGCTTGCTTTTATTCGTGAGAGTG
GCGGACGGGTGAGTAATGCTTGGGAATCTGGCCTATGGAGGGGGATAACA
ACGGGAAACTGTTGCTAATACCGCGTAGTATCGGGAGATGAAAGGGGGCG
TAAGCTCCTGCCATGGGATGAGCCCAAGTGGGATTAGGTAGTTGGTGGGG
TAATGGCTCACCAAGCCTGCGATCTCTAGCTGGTCTGAGAGGATGRCCAG
CCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGTGG
GGAATATTGCGCAATGGGGGGAACCCTGACGCAGCCATGCCGCGTGAATG
AAGAAGGCCTTCGGGTTGTAAAGTTCTTTCGGTGATGAGGAAGGTAACAT
TGCTAATACCAATGTTAATTGACGTTAATTACAGAAGAAGCACCGGCTAA
CTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCGAGCGTTAATCGGAA
TAACTGGGCGTAAAGGGCACGCAGGCGGGCTTTTAAGTGAGGTGTGAAAT
CCCCGGGCTTAACCTGGGAATAGCATTTCAGACTGGGAGTCTAGAGTACT
TTAGGGAGGGGTAGAATTCCACGTGTAGCGGTGAAATGCGTAGAGATGTG
GAGGAATACCGAAGGCGAAGGCAGCCCCTTGGGAATGTACTGACGCTCAT
GTGCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGC
TGTAAACGCTGTCGATTTGGGGATTGGGGTTTGACCTTGGTGCCCGAAGC
TAACGTGATAAATCGACCGCCTGGGGAGTACGGCCGCAAGGTTAAAACTC
AAATGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTC
GATGCAACGCGAAGAACCTTACCTACTCTTGACATCCTAAGAAGAACTCA
GAGATGAGTTTGTGCCTTCGGGAACTTAGAGACAGGTGCTGCATGGCTGT
CGTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTCCCGCAACGAGCGCAAC
CCTTATCCTTTGTTGCCAGCGTTTTGGACGGGAACTCAAAGGAGACTGCC
GGTGATAAACCGGAGGAAGGTGGGGATGACGTCAAGTCATCATGGCCCTT
ACGAGTAGGGCTACACACGTGCTACAATGGTGCATACAGAGGGCGGCGAA
GCTGTAAGGTGGAGCGAATCTCAGAAAGTGCATCTAAGTCCGGATTGGCG
TCTGCAACTCGACGCCATGAAGTCGGAATCGCTAGTAATCGCAAATCAGA
ATGTTGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACC
ATGGGAGTGGGTTGTACCAGAAGTAGATAGCTTAACCTTTTGGGGGGCGT
TTACCACGGTATGATTCATGACTGGGGTGAAGTCGTAACAAGGTAACCGT
AGGGGAACCTGCGGCTGGATCACCTCCTTA
>Actinobacillus succinogenes str. CCUG 28028 prokMSA_id:74465 AF224303.1
..................................................
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.....TGAAGAGTTT-GA--T-CA-T-G-GCTC-AG-AT-TGAA-C-GC-
-TGG-C--G-GC-A-GG--C----T-T--AACACA-T-GC-A-AGT-CGA
-A-CG----------G-TAG-CG-G-------------------------
---ATGA-A-AG--------------------------------------
--------------CTT-G-------------------------------
--------------------------------------------------
-CTT-TTAT----------------T-CG--T--GA--G--AG-T-GG-C
-GG-A--C-------------GGG-TGAGT-A--AT-GC-T-T-G-GG--
-A-A--T-CT-G--G-C-CTA--TG-G-----------------------
-------------------------------------------A-GG---
-GGG-AT-AA-CAA-------------------------C-G-G------
-----------------GAA-A---CTG-TTG-CTAA-TA---CC-G--C
-GT-A----------G--------------------T-------------
------------------------AT-C----------------------
--------------------------------------------------
-----------------------------------------------G-G
G-A-----------------------------------------------
--------------------------------------------------
-------------------------------------G-A-T--------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
---------------------------GAAA--G-G-G-GG---------
-----C--------------------------------------------
--------------------------------------------------
----------------------GTA-A-----------------------
--------------------------------------------------
---------------------------------------------G-C--
TC-C-------T-G--------------C----C-A---T-GG-G---AT
---G-A-----G-CCC-AAG--T-GGG--A------TT--A--G-GT-A-
---G---TTGG-T-G-GG-G-T----AAT-GG-C-T-C-ACCA--A-GC-
C-T--G-CG-A------------TCT-C-T------AG-CT-G-G-TCT-
G-AG----A--GG-AT--G-RC-C-AG-CCAC-A-CTGGA--A-C-TG-A
-GA-C-AC-G-G-TCCAGA-CTCC-TAC-G--G-G-A-G-GC-A-GC-A-
G-TG---GG-G-A-ATA-TTGCG-C-AA-T-GG--GG-GG-A----A-C-
CC-T-GA-CG-CA-GCCA-TGCC-G-CG-T---G-A-A--T--GA-A-G-
-A--A-G-G-CC-----TT-CG---------G-G-T-T-G-T--A---AA
-G-TTC--------TT-TC-G-G--T-GAT----GA-G--G---AA-GGT
A---ACAT-TG----C--T--AA-T---A----C-----CA-A-TGT-TA
A-TT-GA-CG-TT-A-A-TT-A-CA-G---------AA-----------G
AAGC-ACC-GG-C-TAA---C--T-CCGT--GCCA--G-C---A--GCCG
---C-GG--TA-AT--AC---GG-AG-GGT-GCG-A-G-CG-TTAA-T-C
GG-AA-TA-A--C-T--GGGC-GTA----AA-GGGC-AC--G-CA-G-G-
C-G------------G--G-CT-T-T-T-AA----G-T-G-A---G-GTG
-TG-A-AA-TC--CC-CGG-G-----------------------------
---------------------------------------CT-T-AA----
--------------------------------------------------
-------------------CC-T-G-GG-AA-T----A-G-C-A-T-T--
------T--CA-G-A-C-T-G-GGA--G-T-C------------------
--------------------------------------------------
--------------------------------------------------
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---------------------T-A-G-A-G-T-A-----C-TT--TA-G-
G------------G-AG-G-GG-T----AG--AATT-CCA-C-GT--GT-
A-GCG-GTGAAA-TG-CGT-AGAG-A-TG-T-GGA--GG-A-AT-A-CC-
GA--A--G--GC-GAA-G--G-C---A----G--C-C-CCTTG------G
-GA-AT--------------------------------------------
------------------GT-A-C-T--GA--CG-----CT-CA-TG--T
-G-CGA--AA-G-C--------------G-TGGG-GAG-C-A-AACA--G
G-ATTA-G-ATA-C-----CC-T-G-GTA-G-T----C-CA--C-G-CTG
-T-AAA--C-GCTG-TC--GA-TT---------T-GG--G--G-A-TT-G
-GG-G---------------------------------------------
---------------------------------------------TT-TG
--------------------------------------------------
--------------------------------------------------
----------------------------------------------A-C-
C-TT--G-G-T-G-CC-C------GA--A----GC-TAA--CG-T-G-A-
-T--AA-AT--C----G-ACC-GCC-T-G-GG-GAG-TA---CGG-----
C-C--G-C-A-A-GGT-T--AAA-ACTC-AAA---------TGAA-TTG-
ACGGG-G-G-CCCG----C-A--C-A-A-GCG-GT-G--G--AG-CA-T-
-GT-GGT-TT-AATT-C-G-ATG-CAAC-G-CG-A-AG-A-A-CC-TT-A
-CC-TACTC-TT-G-AC-A-T-C--------------CTA-A-G------
-------A-AG-A-A-C--TC--A-GA-G-A-T--G-A-G--T-T-T-G-
-T-G-----CC-------------------------------------T-
-TC-G------------------------------------------GG-
---A----A---CT-TAG---A--GA------------------------
---------------------------C-A-G-G-T-GCTG-CA-TGG-C
T--GTC-GTC-A-GC-TC---G-TG-TT-G--TGA-AA-TGT-T-GG-G-
TT-AA-GT-CCCGC-AA--------C-GAG-CGC-A-ACC-C-T-TA--T
C--C-TTTG--T-T-G-C-C---AG-CGT--T------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
---------------TTGG-------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
--------------------------------------------------
----------------------------------A----C-G--------
----G----G---A-A--CT---------------C-A-A-A-G-GA-G-
-AC-T-G-CCG--G-T----------------------------------
--G-A---TAA----------------------------------A-C-C
-G--G-A-GG-A--AGG-T--GGGG-A-TGAC-GTC--AAGT-C---ATC
-A-T-G-G-C-C-CTT----AC-G--AG-T-A-GG-GC-TA-CAC-ACGT
G-C--TA--CAATG---G-TGCA-T-A--C-AGA-GG-GC----------
--------------------------------------------------
--------------------------------------G-G-C-G-A--A
-GCTG-T--A---------------------------------------A
-GG-T-G-----------G--A-G-CG---A----------A--TCT-C-
-----A-G-AAAGT-GC-A-T-C-T-AAG-TCC--------GGA-T-TGG
CG-TC--T-GCAA-CT-C--------------------------------
--------------------------------------------------
---------------G-ACGCC-A-T-G-AA-G-TC-GGAAT-CG-C-TA
--G-TA-AT-C-G-C----AAA-TC-A-G--A------AT--GTT-GC-G
-GT-G-AAT-ACGT-T-CCCGGGCCT-TGTA----CACACCG-CCC-GTC
-----A---CA--CCA-TG-GG-A--G---TGG-G-TT-GT-ACC--A-G
AA------G--T-AGA-TA-G-C-T-T-AA-C-C----------------
-------------------------------------------TTT----
T-------------------------------------------------
--------------------------------------------------
---GG-G--GG-G--C---GT-TTA--CC--ACG-G----T-ATG-AT-T
CA------------------------TG--ACT-GGGG-TG-AAG-TCGT
AACAA-GGTAACCG-T-AGGGGAA-CCTG-CGGC-TGGATCACCTCCTTA
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