@book{Bonting, author = {De Point Bonting}, title = "{Membrane Transport - New Comprehensive Biochemistry Volume 2}", publisher= "{Elsevier/ North-Holland Biomedical press}", year = "1981", address= "Amsterdam, Holland"} @book{Darwin, author = {Charles Darwin and Francis Darwin}, title = "{The Power of Movement in Plants }", publisher= "{Da Capo Press}", year = "1966", address= "New York"} @book{timoshenko, author = {S Timoshenko}, title = "{Strength of Materials: Part II: Advanced Theory and Problems}", publisher= "{Robert E Krieger Publishing}", year = "1959", address= "FL, USA"} @book{Darwin2, author = {Charles Darwin}, title = "{Insectivorous Plants}", publisher= "{Murray Publishers}", year = "1875", address= "London"} @book{pphysiology, author = {Lincoln Taiz and Eduardo Zeiger}, title = "{Plant Physiology}", publisher = "{}", year = "", address = ""} @book{elliott, author = {William H Elliott and Daphne C. Elliott}, title = "{Biochemistry and Molecular Biology }", publisher = "Oxford University Press ", year = 1997, address = "New York, New York, USA"} @book{lodish, author = {Harvey Lodish and David Baltimore and Arnold Berk and Lawrence Zipursky and Paul Matsudaira and James Darnell}, title = "{ Molecular Cell Biology }", publisher = "Scientific American Books, Inc. ", year = 1998, address = "New York, New York, USA"} @book{Kotyk, author = {Arnost Kotyk and Karel Janacek}, title = "{Biomembranes, volume 9 - Membrane transport: An interdisciplinary Approach }", publisher = "Plenum press ", year = 1977, address = ""} @book{Crank, author = {J Crank}, title = "{ The Mathematics of Diffusion}", publisher = "Academic Press", year = 1975, address = ""} @book{Evan, author = {Evan A Evans and Richard Skalak}, title = "{Mechanics and thermodynamics of Membranes }", publisher = "CRC Press", year = 1980, address = ""} @article{Getz, author = {H. Getz and M. Klein}, title = "{ Characteristics of Sucrose Transport and Sucrose-Induced $H^+$ Transport on the Tonoplast of Red Beet (Beta vulgaris L.) Storage Tissue}", journal = "{Plant Physiology}", year = "1995", volume = "107", number = "2", pages = "459-467", date_logged = "", logged_by = ""} @article{heath, author = {James R Heath and Ryan S Ries and Hyeon Choi and Rikard Blunck and Francisco Bezanilla}, title = "{ Black Lipid Membranes: Visualizing the Structure, Dynamics and Substrate Dependence of Membranes}", journal = "{Journal of Physical Chemistry B}", year = "2004", volume = "108", number = "", pages = "16040-16049", date_logged = "", logged_by = ""} @book{Segel, author = {Irwin H Segel}, title = "{ Biochemical Calculations - How to Solve Mathematical Problems in General Biochemistry }", publisher = "John Wiley Sons, Inc.", year = 1968, address = ""} @book{Knudsen, author = {Ove Sten-Knudsen}, title = "{Biological Membranes - Theory of transport, potentials and electric impulses}", publisher = "Cambridge University Press", year = 2002, address = ""} @book{ralph, author = {Ralph C Smith}, title = "{Smart Material Systems - Model Development}", publisher= "SIAM, Society for Industrial and Applied Mathematics", year = "2005", address= ""} @book{energyGraph, author = {R Kornbluh and R Pelrine and Q Pei and S Shastri}, title = "{Electroactive Polymer Actuators as Artificial Muscles}", publisher = "SPIE Press", year = 2001, address = "Bellingham, WA, USA"} @book{mechanics, author = {E J Hearn}, title = "{Mechanics of Materials II, Chapter 7}", publisher = "Butterworth-Heinemann", year = 1997, address = "Burlington, MA, USA"} @book{GyfBer, author = {E P Gyftopoulos and G P Berreta}, title = "{Thermodynamics: Foundations and Applications}", publisher = "Macmillan Publishing Company", year = 1996, address = ""} @book{Curran, author = {A Katachalsky and Peter F Curran}, title = "{Nonequlibrium Thermodynamics in Biophysics}", publisher = "Harvard University Press", year = 1965, address = ""} @article{Lemoine, author = "Lorraine E. Williams and Remi Lemoine and Norbert Sauer", title = "{Sugar Transporters in Higher Plants - A Diversity of Roles And Complex Regulation:REVIEW ARTICLE}", journal= "Trends in Plant Science", volume = "5", pages = "283-290", year = "2000" } @article{Truernit, author = "Elisabeth Truernit", title = "{Plant physiology: The Importance Of Sucrose Transporters}", journal= "Current Biology", volume = "11", pages = "R169-R171", year = "2001" } @article{Kuhn, author = "C Kuhn and L Barker and L Burkle and W Frommer", title = "{Update On Sucrose Transport In Higher Plants}", journal= "Journal of Experimental Botany", volume = "50", pages = "935-953", year = "1999" } @article{Galina, author = "Anelise Costa dos Santos and Wagner Seixas da-Silva and Leopoldo de Meis and Antonio Galina", title = "{Proton Transport in Maize Tonoplasts Supported by Fructose-1,6-Bisphosphate Cleavage. Pyrophosphate- Dependent Phosphofructokinase as a Pyrophosphate-Regenerating System}", journal= "Plant Physiology, American Society of Plant Biologists", volume = "133", pages = "885-892", year = "October 2003" } @article{delrot, author = "Serge Delrot and Rossitza Atanassova and Eric Gomes and Pierre Thevenot", title = "{Plasma Membrane Transporters: A Machinery for Uptake of Organic Solutes and Stress Resistance}", journal= "Plant Science", volume = "161", pages = "391-404", year = "2001" } @book{grimnes, author = "S Grimnes and O.G. Martinsen", title = "Bioimpedance \& Bioelectricity BASICS", publisher= "Academic press", year = "2000", address= ""} @book{voet, author = "Donald Voet and Judith G Voet", title = "Biochemistry", publisher= "John Wiley \& Sons, Inc.", year = "1995", address= ""} @article{galla, author = "Claudia Steinem and Andreas Janshoff and Wolf Peter Ulrich and Manfred Sieber and Hans Joachim Galla", title = "{Impedance Analysis of Supported Lipid Bilayer Membranes: A Scrutiny of Different Preparation Techniques}", journal= "Molecular and Cellular Biology Letters", volume = "1279(2)", pages = "169-180", year = "March 1996" } @article{monika, author = "Monika Naumowicz and Aneta Petelska and Zbigniew A Figaszewski", title = "{The Capacitance And Resistance Of The Two Component Bilayer Lipid Membrane Modelling Of The Cell Membrane}", journal= "Molecular and Cellular Biology Letters", volume = "8", pages = "414", year = "2001"} @article{yokokawa, author = "Ryuji Yokokawa and Shoji Takeuchi and Takahide Kon and Reiko Ohkura and Masaki Edamatsu and Kazuo Sutohand Hiroyuki Fujita", title = "{Transportation of Micromachined Structures by Biomolecular Linear Motors}", journal= "IEEE ", volume = "", pages = "8-11", year = "2003 "} @article{Woehlke, author = "Günther Woehlke and Manfred Schliwa", title = "{Directional Motility Of Kinesin Motor Proteins}", journal= "Biochimica et Biophysica Acta (BBA) - Molecular Cell Research ", volume = "1496(1)", pages = "117-127", year = "March 2000 "} @article{Ishijimaa, author = "Akihiko Ishijimaa and Toshio Yanagida", title = "{Single Molecule Nanobioscience}", journal= "Biochimica et Biophysica Acta (BBA) - Molecular Cell Research ", volume = "26(7)", pages = "438-444", year = "July 2001"} @article{vale, author = "Vale and T.Funatsu and D.W.Pierce and L.Romberg and Y,Harada and T.Yanagida", title = "Direct observation of single kinesin molecules moving along microtubules", journal= "Nature ", volume = "380", pages = "451-453", year = "1996 "} @inproceedings{myASME, author = "Vishnu Baba Sundaresan and Honghui Tan and Donald J Leo and John Cuppoletti", title = "INVESTIGATION ON HIGH ENERGY DENSITY MATERIALS UTILIZING BIOLOGICAL TRANSPORT MECHANISMS", booktitle= "Proceedings of IMECE-2004, Anaheim, CA, USA", editor = "", series = "", volume = "", pages = "", year = "2004" } @inproceedings{mySPIE, author = "Vishnu Baba Sundaresan and Donald J Leo", title = "{Chemo-mechanical Model of Biological Membranes For Actuation Mechanisms}", booktitle= "Proceedings of SPIE-2005", editor = "", series = "", volume = "", pages = "", publisher = "SPIE Press", year = 2001, address = "Bellingham, WA, USA"} @inproceedings{mySPIE2, author = "Vishnu Baba Sundaresan and Donald J Leo", title = "{Protein-based Microhydraulic Transport for Controllable Actuation}", booktitle= "Proceedings of SPIE-2006", editor = "", series = "", volume = "", pages = "", publisher = "SPIE Press", year = 2006, address = "Bellingham, WA, USA"} @inproceedings{tien, author = "H Ti Tien", title = "{Planar Bilayer Lipid Membranes}", booktitle= "Progress in Surface Science", editor = "", series = "", volume = "(19)3", pages = "169-274", year = "1985" } @inproceedings{Mueller, author = "P Mueller and D O Rudin and H T Tien and W Wescott", title = "{Methods For the Formation of Single Bimolecular Lipid Membranes in Aqueous Solutions}", booktitle= "Journal of Physical Chemistry", editor = "", series = "", volume = "67", pages = "534-535", year = "1963" } @article{steinem, author = "Winfried Romer and Claudia Steinem", title = "{Impedance Analysis and Single-Channel Recordings on Nano-Black Lipid Membranes Based on Porous Alumina}", journal= "Biophysical Journal", volume = "86", pages = "955-965", year = "2004" } @article{cheng, author = "Y Cheng and S D Ogier and R J Bushby and S D Evans", title = "{Discrete Membrane Arrays}", journal= "Reviews in Molecular Biotechnology", volume = "74", pages = "159-74", year = "2000" } @article{tien2, author = "H Ti Tien and Angelica L Ottova", title = "{From Self-assembled Bilayer Lipid Membranes {BLMs} to Supported {BLMs} on Metal and Gel Substrates to Practical Applications}", journal= "Colloids and Surfaces A: Physiochemical and Engineering Aspects", volume = "149", pages = "217-233", year = "1999" } @article{tien3, author = "H Ti Tien and Angelica L Ottova", title = "{The Lipid Bilayer Concept and Its Experimental Realization: From Soap Bubbles, Kitchen Sink, to Bilayer Lipid Membranes}", journal= "Journal of Membrane Science", volume = "189", pages = "83-117", year = "2001"} @article{mulchandni, author = "Marek Trojanowicz and Ashok Mulchandni", title = "{Analytical Applications of Planar Bilayer Lipid Membranes}", journal= "Anal Bioanal Chem ", volume = "379", pages = "347-350", year = "2004"} @inproceedings{fujiwara, author = "Hishashi Fujiwara and Masayuki Fujihara and Takahiro Koyama and Takashi Ishiwata", title = "{New Aspect of the Spontaneous Formation of a Bilayer Lipid Membrane}", booktitle= "Slow Dynamics in Complex Systems, 3rd International Symposium", editor = "M Tokuyama and I Oppenheim", series = "American Institute of Physics", volume = "(19)3", pages = "724-726", year = "2004" } @article{worsfold, author = "O Worsfold and C Toma and T Nishiya", title = "{Development of a Novel Optical Bionanosensor}", journal= "Biosensors and Bioelectronics", volume = "19", pages = "1505-1511", year = "2004"} @article{jana, author = "Jana Jass and Tjarnhage and Gertrud Puu", title = "{From Liposomes to supported, planar bilayer structures on hydrophylic and hydrophobic surfaces: An Atomic Force Microscopy Study}", journal= "Biophysical Journal", volume = "79", pages = "3153-3163", year = "2000"} @article{yang, author = "Won Young Yang and Yoon Bong Hahn and Kee Suck Nahm and Youn-Sik Lee", title = "{Chemical Modification of Skeletonized Vesicles via Hydrolysis}", journal= "Bulletin - Korean Chemical Society", volume = "22 - 12", pages = "1291-1292", year = "2001"} @article{Sackmann, author = "E Sackmann", title = "{Supported Membranes: Scientific and Practical Applications}", journal= "Science", volume = "271", pages = "43-48", year = "1996"} @article{wagner, author = "Michael L Wagner and Lukas K Tamm", title = "{Tethered Polymer-Supported Planar Lipid Bilayers for Reconstitution of Integral Membrane Proteins: Silane-Polyethyleneglycol-Lipid as a Cushion and Covalent Linker}", journal= "Biophysical Journal", volume = "79", pages = "1400-1414", year = "2000"} @article{saccani, author = "Julie Saccani and S. Castano and B. Desbat and D. Blaudezy", title = "{A Phospholipid Bilayer Supported under a Polymerized Langmuir Film}", journal= "Biophysical Journal", volume = "85", pages = "3781-3787", year = "2003"} @article{ide, author = "Toru Ide and Takehiko Ichikawa", title = "{Short Communication: A Novel Method for Artificial Lipid Bilayer Formation}", journal= "Biosensors and Bioelectronics", pages = "672-677", year = "2005"} @article{ye, author = "Jian-Shan Ye and Hui-Fang Cui and Ying Wen and Wei De Zhang and Angelica Ottova and H. Ti Tien and Guo Qin Xu and Fwu-Shan Sheu", title = "{Self-assembly of Bilayer Lipid Membrane at Multi-walled Carbon Nanotubes Toward The Development Of Photo-switched Functional Device}", journal= "Electrochemistry communications", volume = "7", pages = "81-86", year = "2005"} @misc{gpib, author = "National Instruments", title = "{NI Developer Zone- Instrument Driver Network}", howpublished = "Website", year = {2004}, note = {\url{http://sine.ni.com}}} @misc{rcsb, author = "RCSB", title = "{Research Collaboratory for Structural Bioinformatics (RCSB)Protein Data Bank}", howpublished = "Website", year = {2005}, note = {\url{http://www.rcsb.org/pdb} - generated using RasWin Molecule viewer}} @book{Nicholls, author = "Nicholls, David G. and Ferguson, Stuart J", title = "{Bioenergetics 3}", publisher = "Clarendon Press", year = 2001, address = "525 B Street, Suite 1900, San Diego, California 92101-4495, USA"} @book{weiss, author = "Thomas Fischer Weiss", title = "Cellular Biophysics", publisher = "The MIT Press", year = 1996, address = "Cambridge, MA, USA"} @book{steinbook, author = "Stein,Wilfried D. ", title = "Transport and Diffusion across Cell Membranes", publisher = "Academic Press, Inc.", year = 1986, address = "Orlando, FL, USA"} @book{friedman, author = "Morton H. Friedman", title = "{Principles and Models of Biological Transport}", publisher = "Springer-Verlag Berlin", year = 1986, address = "Heidelberg, Germany"} @article{lalonde, author = "Sylvie Lalonde and Eckhard Boles and Hanjo Hellmann and Laurence Barker and John W. Patrick and Wolf B. Frommer and John M. Ward", title = "{The Dual Function of Sugar Carriers: Transport and Sugar Sensing}", journal= "Plant Cell", volume = "11", pages = "707-726", year = "1999", month = "4"} @article{burkle, author = "Lukas Burkle and Julian M. Hibberd and W. Paul Quick and Christina {K$\rm{\ddot{u}}$hn} and Brigitte Hirner and Wolf B. Frommer", title = "{The H$^+$-Sucrose Cotransporter AtSUT1 Is Essential for Sugar Export from Tobacco Leaves}", journal= "Plant Physiology", volume = "118(1)", pages = "59-68", year = "1998"} @article{weise, author = "Andreas Weise and Laurence Barker and Christina Kuhn and Sylvie Lalonde and Henrik Buschmann and Wolf B. Frommer and John M. Ward", title = "{A New Subfamily of Sucrose Transporters, SUT4, with Low Affinity/High Capacity Localized in Enucleate Sieve Elements of Plants}", journal = "Plant Cell", year = "2000", volume = "12", number = "", pages = "1345-1355", month = "August"} @article{oster1, author = "Michael Grabe and Hongyun Wang and George Oster", title = "The Mechanochemistry of V-ATPase Proton Pumps", journal= " Biophysical Journal ", volume = "78 ", pages = "27982813", year = "June 2000"} @article{oster2, author = "Hongyun Wang and George Oster", title = "Rotary Protein Motors", journal= "TRENDS in Cell Biology ", volume = "114 -Issue 121", pages = "2798-2813", year = "March 2003"} @article{lieb, author = "Wilfried D Stein and W.R. Lieb", title = "Testing and Characterizing the Simple Carrier", journal= "Biochemical Biophysica Acta ", volume = "373 ", pages = "178-196", year = "1974"} @article{buzatu, author = "Stefan Buzatu and Virgil Darie", title = "A facilitated diffusion mechanism modeling", journal= "Romanian Biotechnological Letters ", volume = "6-No.3 ", pages = "259-265", year = "2001"} @article{starzak, author = "Ann Janauer and Michael E. Starzak", title = "Carrier mediated transport in model membranes monitored by EU(III) fluorescence", journal= "Journal of Luminescence", volume = "91", pages = "13-18", year = "2000"} @article{lisboa, author = "Julio A. Hernández and Juan Carlos Valle Lisboa ", title = "Reduced Kinetic Models of Facilitative Transport", journal= "Biochimica et Biophysica Acta (BBA) - Biomembranes", volume = "1665 - Issues 1-2", pages = "65-74", year = "11 October 2004"} @CONFERENCE{myASME2, AUTHOR = "Vishnu Baba Sundaresan and Donald J Leo", TITLE = "{Experimental Investigation for Chemo-mechanical Actuation Using Biological Transport Mechanisms}", BOOKTITLE = "Proceedings of IMECE-2005", YEAR = "2005", EDITOR = "", PAGES = "", ORGANIZATION = "American Society of Mechanical Engineers", PUBLISHER = "ASME", ADDRESS = "Orlando, FL, USA", MONTH = "November", NOTE = "" } @article{briskin1, author = "Donald P Briskin", title = "Intermediate Reaction States of the Red Beet Plasma Membrane ATPase", journal= "Archives of Biochemistry and Biophysics", volume = "248", number = "1", pages = "106-115", year = "2005", month = "July"} @article{cheng2, author = "Yaling Cheng and Richard J. Bushby and Stephen D. Evans and Peter F. Knowles and Robert E. Miles and Simon D. Ogier", title = "Single Ion Channel Sensitivity in Suspended Bilayers on Micromachined Supports", journal= "Langmuir", volume = "17", pages = "1240-1242", year = "2001"} @article{groves, author = "Jay T. Groves and Nick Ulman and Steven G. Boxer", title = "Micropatterning Fluid Lipid Bilayers on Solid Supports", journal= "Nature", volume = "275", pages = "651-653", year = "1997"} @article{shao, author = "Yong Shao and Yongdong Jin and Jianlong Wang and Li Wang and Feng Zhao and Shaojun Dong", title = "Conducting polymer polypyrrole supported bilayer lipid membranes", journal= "Biosensors and Bioelectronics", volume = "20", pages = "1373-1379", year = "2005"} @article{supriya, author = "Lakshmi Supriya and Richard O Claus", title = "Solution-based Assembly of Conductive Gold Film on Flexible Polymer Substrates", journal= "Langmuir", volume = "20", pages = "8870-8876", year = "2004"} @article{monica, author = "Monika Naumowicza and Aneta D. Petelskaa and Zbigniew A. Figaszewskia", title = "Impedance Analysis of Phosphatidylcholine -cholesterol System in Bilayer Lipid Membranes", journal= "Electrochimica Acta", volume = "50 ", pages = "2155-2161", year = "2005"} @article{boorer, author = "Kathryn J Boorer and Donald D F Loo and Wolf B Frommer and Ernest Wright", title = "Transport Mechanism of the Cloned Potato H1/Sucrose Cotransporter StSUT1", journal= "The Journal of Biological Chemistry", volume = "271-(41)", pages = "25139-25144", year = "1996"} @article{laser, author = "D J Laser and J G Santiago", title = "{A Review of Micropumps}", journal = "{Journal of Micromechanics and Microengineering}", volume = "{14}", number = "{6}", pages = "{R35-R64}", url = "{http://stacks.iop.org/0960-1317/14/R35}", year = "{2004}" } @article{hodick, author = {D Hodick and A Sievers}, title = "{On the Mechanism of Trap Closure of Venus flytrap (Dionaea muscipula Ellis)}", journal = "{Planta}", volume = "{179}", pages = "{32-42}", year = "{1989}", month = "{June}" } @article{siboka, author = {T Sibaoka}, title = "{Physiology of Rapid Movements in Higher Plants}", journal = "{Annual Review of Plant Physiology}", volume = "{20}", pages = "{165-184}", url = "{http://stacks.iop.org/0960-1317/14/R35}", year = "{1969}" } @article{mahadevan, author = {Yoel Forterre and Jan M Skotheim and Jacques Dumais and L Mahadevan}, title = "{How the Venus flytrap snaps}", journal = "{Nature}", volume = "{433}", pages = "{421-425}", url = "{http://www.nature.com/nature/journal/v433/n7024/suppinfo/nature03185_S1.html}", year = "{2005}", month = "{January}" } @article{morillon, author = {Raphael Morillon and David Lienard and Maarten J Chrispeels and Jean-Paul Lassalles}, title = "{Rapid Movements of Plants Organs Require Solute-Water Cotransporters or Contractile Proteins}", journal = "{Plant Physiology}", volume = {127}, number = {3}, pages = {720-723}, doi = {10.1104/pp.010732}, year = {2001}, URL = {http://www.plantphysiol.org}, eprint = {http://www.plantphysiol.org/cgi/reprint/127/3/720.pdf} } @article{hill, author = {B S Hill and G P Findlay}, title = "{The Power of Movement in Plants: The Role of Osmotic Machines}", journal = "{Quaterly Review in Biophysics}", volume = {14}, number = {2}, pages = {173-222}, year = {1981}, month = {May} } @phdthesis{bakle, author = "Barbar Akle", title = "Characterization and Modeling of the Ionomer-Conductor Interface in Ionic Polymer Transducers", school = "Virginia Polytechnic Institute and State University", year = "2005", address = "Blacksburg, VA - 24061, USA", month = "July" }