BLASTX+BEAUTY Search Results

Please help us to improve our services and obtain funding for the
BCM Search Launcher
-- take a minute to complete our User Survey
BLASTX+BEAUTY Search Results

WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.
BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.
BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract
Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract




processing output:
cycle 1
cycle 2
cycle 3
cycle 4
Repeat sequence:
   SW  perc perc perc  query             position in query    matching repeat         position in  repeat
score  div. del. ins.  sequence          begin  end (left)    repeat   class/family   begin  end (left)  ID

   32   2.9  0.0  0.0  A01K18_CONSENSUS    625  658    (0) +  AT_rich  Low_complexity     1   34    (0)      

Alignments:
32  2.94  0.00  0.00  A01K18_CONSENSUS  625  658  (0)  C  AT_rich#Low_complexity  (266)  34  1  5

  A01K18_CONSENSU    625 TAANTTAAATTTTTTTAAAAAAAAAAAAAAAAAA 658    
                          vv?  vv      v  vv vvv vvvv vvvvv
C AT_rich#Low_com     34 TTTATTTTATTTTTATATTATTTATTTTATTTTT 1      

Transitions / transversions = 0.00 (0 / 19)
Gap_init rate = 0.00 (0 / 34), avg. gap size = 0.00 (0 / 0)  

Masked Sequence:
>A01K18_CONSENSUS
GCAAAATCTAGGGTTTGTTCGTTCGCTCGTTCGCAACAATGGCGCTGAGG
AGATTCTACAACGAGATCAAGGGGNAGNGGGTGAGCGAGGTCCCTGAGCA
CGTGAAGCCGATGCTGTCCCTGAGCTACATCAAGAAAGCGATTCAGAGAG
GCTTCGACAATTACCATGCCAAGTACATTGAAACCAGTTCCCCTGATCCC
ATCTTCCATGTCTGCTACGGCGGCATGATCTTCTCCTACCTCGTCGCTCT
CCCCCACGAGCGCCGCCACCTCCTCCACGCCCAGGAGCACGCTCAGCAGC
ATCACTGATTCCATCCACCTTCAGGATCCTGGTTGAATTGGAGGTGGTTG
GCTTGCTTGATCTTTGTTTTAAAATCTGAAAAATCAAGGCAGAAAGATAC
TGTCAGCTTCTGTGTTATTTCATCATTTGGATGATAAAATAAGTTCTATT
TGATACAATTCTCAATTTTCTTGCAGTTAAATGTTTAATTGAATGTGTTA
AAAATGANCATACTTTTTTATTTGGTTCTGTCTTTTANGTCCTCTTGATG
TGGTGATGTAATTTTGCNACTGTTCCAATTATGGGATAGGTTTCATATCT
CNAACAAATCNTANACAGTGCCCCNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNN

Summary:
==================================================
file name: /repeatmasker/tmp/RM2seq
sequences:            1
total length:       658 bp
GC level:         42.37 %
bases masked:        34 bp (  5.17 %)
==================================================
               number of      length   percentage
               elements*    occupied  of sequence
--------------------------------------------------
SINEs:                0            0 bp     0.00 %
      ALUs            0            0 bp     0.00 %
      MIRs            0            0 bp     0.00 %

LINEs:                0            0 bp     0.00 %
      LINE1           0            0 bp     0.00 %
      LINE2           0            0 bp     0.00 %
      L3/CR1          0            0 bp     0.00 %

LTR elements:         0            0 bp     0.00 %
      MaLRs           0            0 bp     0.00 %
      ERVL            0            0 bp     0.00 %
      ERV_classI      0            0 bp     0.00 %
      ERV_classII     0            0 bp     0.00 %

DNA elements:         0            0 bp     0.00 %
      MER1_type       0            0 bp     0.00 %
      MER2_type       0            0 bp     0.00 %

Unclassified:         0            0 bp     0.00 %

Total interspersed repeats:        0 bp     0.00 %


Small RNA:            0            0 bp     0.00 %

Satellites:           0            0 bp     0.00 %
Simple repeats:       0            0 bp     0.00 %
Low complexity:       1           34 bp     5.17 %
==================================================

* most repeats fragmented by insertions or deletions
  have been counted as one element

The sequence(s) were assumed to be of primate origin.
RepeatMasker version 07/16/2000               default
ProcessRepeats version 07/16/2000
Repbase version 03/31/2000


Reference:  Gish, Warren (1994-1997).  unpublished.
Gish, Warren and David J. States (1993).  Identification of protein coding
regions by database similarity search.  Nat. Genet. 3:266-72.

Notice:  statistical significance is estimated under the assumption that the
equivalent of one entire reading frame in the query sequence codes for protein
and that significant alignments will involve only coding reading frames.

Query=  A01K18_CONSENSUS
        (658 letters)
  Translating both strands of query sequence in all 6 reading frames

Database:  nr
           625,274 sequences; 197,782,623 total letters.


     Observed Numbers of Database Sequences Satisfying
    Various EXPECTation Thresholds (E parameter values)

        Histogram units:      = 16 Sequences     : less than 16 sequences

 EXPECTation Threshold
 (E parameter)
    |
    V   Observed Counts-->
  10000 4357 955 |===========================================================
   6310 3402 718 |============================================
   3980 2684 648 |========================================
   2510 2036 519 |================================
   1580 1517 394 |========================
   1000 1123 289 |==================
    631  834 216 |=============
    398  618 153 |=========
    251  465 139 |========
    158  326  94 |=====
    100  232  61 |===
   63.1  171  57 |===
   39.8  114  28 |=
   25.1   86  16 |=
   15.8   70  20 |=
 >>>>>>>>>>>>>>>>>>>>>  Expect = 10.0, Observed = 50  <<<<<<<<<<<<<<<<<
   10.0   50  18 |=
   6.31   32   9 |:
   3.98   23   5 |:
   2.51   18   2 |:
   1.58   16   3 |:
   1.00   13   6 |:
   0.63    7   0 |
   0.40    7   0 |
   0.25    7   3 |:
   0.16    4   1 |:
   0.10    3   1 |:
  0.063    2   0 |
  0.040    2   0 |
  0.025    2   0 |
  0.016    2   1 |:


                                                                     Smallest
                                                                       Sum
                                                     Reading  High  Probability
Sequences producing High-scoring Segment Pairs:        Frame Score  P(N)      N
gi|7486514|pir||T08977hypothetical protein F6G3.40 - ... +3   285  4.7e-24   1
gi|7649953|dbj|BAA94196.1|(AB040776) ORF1 [TT virus]     -2    61  0.013     2
gi|9627281ref|NP_041761.1| early protein [Human papil... -2   100  0.088     1
gi|10181184ref|NP_065607.1| ATP synthase, H+ transpor... +3    78  0.11      1
gi|2493089|sp|P56135|ATPK_MOUSEATP SYNTHASE F CHAIN, ... +3    76  0.17      1
gi|7439909|pir||H58208protamine II - black rat snake ... -2    76  0.18      1
gi|5441235|dbj|BAA82345.1|(AB024360) ORF1 [TT virus] ... -2    51  0.19      2
gi|547943|sp||MUC3_HUMAN_2[Segment 2 of 2] MUCIN 3A (... +1    71  0.50      1
gi|1082607|pir||S53366mucin 5AC (clone MAR10) - human... +1    70  0.60      1
gi|8096390|dbj|BAA95861.1|(AP002070) hypothetical pro... +1    70  0.60      1
gi|2134211|pir||F58208protamine II-5 - painted turtle    -2    70  0.60      1
gi|2134207|pir||B58208protamine II-1 - painted turtle    -2    70  0.60      1
gi|7489465|pir||T04144DNA binding protein - rice         -2    76  0.62      1
gi|9628522ref|NP_043398.1| regulatory protein E2 [Hum... -2    92  0.64      1
gi|82087|pir||S19774glycine-rich protein - tomato (fr... -2    69  0.69      1
gi|111978|pir||S24169mucin - rat                         +1    88  0.77      1
gi|1582641|prf||2119210Amucin [Homo sapiens]             +1    83  0.80      1
gi|627549|pir||C33532mucin SMUC-42 - human (fragment)... +1    67  0.86      1
gi|2134209|pir||D58208protamine II-3 - painted turtle    -2    66  0.92      1
gi|2135764|pir||I53641mucin 5AC - human (fragment) >g... +1    81  0.94      1
gi|1169890|sp|P43029|GDF7_MOUSEGROWTH/DIFFERENTIATION... -2    80  0.95      1
gi|5803207ref|NP_006749.1| U2(RNU2) small nuclear RNA... -2    84  0.96      1
gi|12742621ref|XP_009787.2| U2(RNU2) small nuclear RN... -2    84  0.97      1
gi|399783|sp|Q01157|GRW1_LYCESGLYCINE-RICH CELL WALL ... -2    64  0.99      1
gi|7489007|pir||S14979glycine-rich protein (clone uE-... -2    64  0.99      1
gi|2134206|pir||A58208protamine I-1 - painted turtle     -2    64  0.99      1
gi|2134210|pir||E58208protamine II-4 - painted turtle    -2    64  0.99      1
gi|11346533|pir||T44657protein GP80 [imported] - bovi... +1    83  0.994     1
gi|7297949|gb|AAF53193.1|(AE003636) SC35 gene product... -2    73  0.996     1
gi|11362263|pir||T46740microfilarial sheath protein S... +1    84  0.997     1
gi|7292702|gb|AAF48099.1|(AE003487) CG15741 gene prod... +1    76  0.997     1
gi|2911569|emb|CAA75473.1|(Y15176) putative [Human pa... -2    85  0.998     1
gi|7510373|pir||T33925hypothetical protein Y66H1A.4 -... -2    82  0.999     1
gi|1911629|gb|AAB50771.1|(S83377) huntingtin protein ... +2    62  0.9991    1
gi|7940276|gb|AAF70835.1|AC003113_2(AC003113) F24O1.6... +2    62  0.9991    1
gi|8927174|gb|AAF81987.1|AF178693_1(AF178693) gp15 an... +1    62  0.9991    1
gi|11527396ref|NP_068527.1| metastasis-associated GPI... +1    83  0.9995    1
gi|4506819ref|NP_002969.1| sodium channel, nonvoltage... +2    86  0.9995    1
gi|2724058|gb|AAB92659.1|(AF038165) epithelial sodium... +2    86  0.9995    1
gi|12719723ref|XP_001591.2| sodium channel, nonvoltag... +2    86  0.9995    1
gi|9635108ref|NP_057754.1| R-LORF13 [Gallid herpesvir... -2    70  0.9997    1
gi|7504243|pir||T15188hypothetical protein F55A12.6 -... -2    84  0.9997    1
gi|322758|pir||PQ0477pistil extensin-like protein (cl... +2    61  0.9999    1
gi|4008584|emb|CAA12281.1|(AJ224997) huntingtin [Ratt... +2    61  0.9999    1
gi|100219|pir||S14985glycine-rich protein (clone uK-4... -2    61  0.9999    1
gi|266845|sp|P30258|PRT3_SCYCAPROTAMINE Z3 (SCYLLIORH... -2    61  0.9999    1
gi|2134208|pir||C58208protamine II-2 - painted turtle    -2    61  0.9999    1
gi|8099235|gb|AAF72083.1|AC025098_17(AC025098) Hypoth... +2    76  0.99993   1
gi|140547|sp|P25653|FIG2_YEASTFACTOR INDUCED GENE 2 >... +1    89  0.99995   1
gi|10383809ref|NP_010013.2| predicted GPI-anchored ce... +1    89  0.99995   1



Locally-aligned regions (HSPs) with respect to query sequence:

Locus_ID                Frame 3 Hits
gi|7486514             |  _____________________                           
gi|10181184            |         ____________                             
gi|2493089             |         ____________                             
                        __________________________________________________
Query sequence:        |           |          |          |           |    | 220
                       0          50        100        150         200


Locus_ID                Frame 2 Hits
gi|1911629             |                 _____                            
gi|7940276             |                 _____                            
gi|4506819             |                 _________                        
gi|2724058             |                 _________                        
gi|12719723            |                 _________                        
gi|322758              |                 _______                          
gi|4008584             |                 _____                            
gi|8099235             |               ___________                        
                        __________________________________________________
Query sequence:        |           |          |          |           |    | 220
                       0          50        100        150         200


Locus_ID                Frame 1 Hits
gi|547943              |           _____________                          
gi|1082607             |           _____________                          
gi|8096390             |                 _________                        
gi|111978              |           _____________                          
gi|1582641             |    ______________________                        
gi|627549              |            __________                            
gi|2135764             |    ____________________                          
gi|11346533            |         _______________                          
gi|11362263            |          ______________                          
gi|7292702             |           _____________                          
gi|8927174             |           ______________                         
gi|11527396            |   _____________________                          
gi|140547              |         ______________                           
gi|10383809            |         ______________                           
                        __________________________________________________
Query sequence:        |           |          |          |           |    | 220
                       0          50        100        150         200


Locus_ID                Frame -1 Hits
gi|7649953             |                   ___                            
gi|5441235             |                   ___                            
                        __________________________________________________
Query sequence:        |           |          |          |           |    | 220
                       0          50        100        150         200


Locus_ID                Frame -2 Hits
gi|7649953             |               _____                              
gi|9627281             |                                                  
gi|7439909             |               _______                            
gi|5441235             |             _______                              
gi|2134211             |               ______                             
gi|2134207             |               ______                             
gi|7489465             |               ___________                        
gi|9628522             |                                                  
gi|82087               |             _________                            
gi|2134209             |               ______                             
gi|1169890             |             _________                            
gi|5803207             |               ________                           
gi|12742621            |               ________                           
gi|399783              |                ______                            
gi|7489007             |                ______                            
gi|2134206             |               ________                           
gi|2134210             |               ______                             
gi|7297949             |               ________                           
gi|2911569             |                                                  
gi|7510373             |             _____________                        
gi|9635108             |              ____________                        
gi|7504243             |                                                  
gi|100219              |                 _____                            
gi|266845              |               ________                           
gi|2134208             |               ______                             
                        __________________________________________________
Query sequence:        |           |          |          |           |    | 220
                       0          50        100        150         200


Use the  and  icons to retrieve links to Entrez:
E = Retrieve Entrez links (e.g., Medline abstracts, FASTA-formatted sequence reports).
R = Retrieve links to Related sequences (neighbors).

Use the  icon (if present) to retrieve links to the Sequence Retrieval System (SRS).

Use the  icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .

Use the  icon (if present) to retrieve links to the Protein Data Bank database.


 >gi|7486514|pir||T08977  hypothetical protein F6G3.40 - Arabidopsis thaliana
            >gi|4938477|emb|CAB43836.1| (AL078464) putative protein
            [Arabidopsis thaliana] >gi|7269901|emb|CAB80994.1| (AL161576)
            putative protein [Arabidopsis thaliana]
            Length = 90

Frame  3 hits (HSPs):   ________________________________________________  
                        __________________________________________________
Database sequence:     |          |          |          |          |      | 90
                       0         20         40         60         80

  Plus Strand HSPs:

 Score = 285 (100.3 bits), Expect = 4.7e-24, P = 4.7e-24
 Identities = 51/88 (57%), Positives = 70/88 (79%), Frame = +3

Query:    39 MALRRFYNEIKGXXVSEVPEHVKPMLSLSYIKKAIQRGFDNYHAKYIETSSPDPIFHVCY 218
             MALRR Y+EI+G  V+E+P ++K   S+  +K +++RG DNY+ KYI+TSS DPI H+C+
Sbjct:     1 MALRRVYSEIRGKKVTELPGYIKSTFSMETVKTSVKRGLDNYNEKYIQTSSVDPILHICF 60

Query:   219 GGMIFSYLVALPHERRHLLHAQEHAQQH 302
              GM FSYLVALP+ERRHL H Q+HA++H
Sbjct:    61 YGMAFSYLVALPNERRHLEH-QQHAKEH 87


 >gi|7649953|dbj|BAA94196.1|  (AB040776) ORF1 [TT virus]
            Length = 57

Frame -1 hits (HSPs):             ____________                            
Frame -2 hits (HSPs):                             __________________      
                        __________________________________________________
Database sequence:     |                |                 |               | 57
                       0               20                40

  Minus Strand HSPs:

 Score = 61 (21.5 bits), Expect = 0.013, Sum P(2) = 0.013
 Identities = 13/21 (61%), Positives = 14/21 (66%), Frame = -2

Query:   258 RGGERRGRRRSCRRSRHG-RW 199
             R   RRGRRR+ RR R G RW
Sbjct:    31 RPARRRGRRRNVRRRRRGGRW 51

 Score = 42 (14.8 bits), Expect = 0.013, Sum P(2) = 0.013
 Identities = 8/13 (61%), Positives = 8/13 (61%), Frame = -1

Query:   283 WA-WRR--WRRSW 254
             W  WRR  WRR W
Sbjct:    13 WRRWRRRPWRRRW 25


 >gi|9627281  ref|NP_041761.1| early protein [Human papillomavirus type 15]
            >gi|549239|sp|P36784|VE2_HPV15 REGULATORY PROTEIN E2
            >gi|480144|pir||S36476 E2 protein - human papillomavirus type 15
            >gi|396928|emb|CAA52509.1| (X74468) early protein [Human
            papillomavirus type 15]
            Length = 382

Frame -2 hits (HSPs):                         ______________              
                        __________________________________________________
Database sequence:     |                   |                   |          | 382
                       0                 150                 300

  Minus Strand HSPs:

 Score = 100 (35.2 bits), Expect = 0.092, P = 0.088
 Identities = 37/100 (37%), Positives = 48/100 (48%), Frame = -2

Query:   366 QRSSKPTTSNSTRILKVDGI--SDAAERA--PGRGGGGGARGGERRGRRRSCRRSRHGRW 199
             ++ S PTT+ +TR  K  G    D A R+    RG    +RGG +R RRRS   S    W
Sbjct:   172 RKESSPTTT-TTRRQKRQGQRQEDTARRSRSTSRGRQEISRGGNQRRRRRSRETSISPAW 230

Query:   198 DQGNWFQCTWHGNCRSLSESLS*CSSGTASASRAQGPRSPXXP 70
              +G   +       RS S+SLS   S + S SR   PR    P
Sbjct:   231 GRGG--RSRRGPTTRSQSKSLSRSRSRSKSRSRGSSPRGGISP 271


 >gi|10181184  ref|NP_065607.1| ATP synthase, H+ transporting, mitochondrial F0
            complex, subunit f, isoform 2; hypothetical protein, clone:2-31
            [Mus musculus] >gi|7259254|dbj|BAA92756.1| (AB030192) homologue of
            S70447 F1Fo-ATP synthase complex Fo membrane domain f subunit
            [cattle, heart, mRNA, 403 nt] [Mus musculus]
            Length = 88

Frame  3 hits (HSPs):                    _________________________________
                        __________________________________________________
Database sequence:     |          |           |          |          |     | 88
                       0         20          40         60         80

  Plus Strand HSPs:

 Score = 78 (27.5 bits), Expect = 0.12, P = 0.11
 Identities = 22/57 (38%), Positives = 29/57 (50%), Frame = +3

Query:   123 SYIKKAIQRGFDNYHAKYIET--SSPDPIFHVCYGGMIFSYLVA---LPHERRHLLH 278
             S I  A +RG+D Y+ KYI     S   I  V    ++FSY ++   L HERR   H
Sbjct:    32 SGIAGAFRRGYDRYYNKYINVRKGSISGISMVLAAYVVFSYCISYKELKHERRRKYH 88


 >gi|2493089|sp|P56135|ATPK_MOUSE  ATP SYNTHASE F CHAIN, MITOCHONDRIAL
            Length = 88

Frame  3 hits (HSPs):                    _________________________________
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |          |           |          |          |     | 88
                       0         20          40         60         80
__________________

Annotated Domains:
   Entrez               acetylation site: (BY SIMILARITY).       2
   PRODOM               PD015221: ATPK(4) O76079(1)              1..86
__________________


  Plus Strand HSPs:

 Score = 76 (26.8 bits), Expect = 0.19, P = 0.17
 Identities = 22/57 (38%), Positives = 29/57 (50%), Frame = +3

Query:   123 SYIKKAIQRGFDNYHAKYIET--SSPDPIFHVCYGGMIFSYLVA---LPHERRHLLH 278
             S I  A +RG+D Y+ KYI     S   I  V    ++FSY ++   L HERR   H
Sbjct:    32 SGIAGAFRRGYDRYYNKYINVRKGSISGISMVLAAYVVFSYCISYKELKHERRPKYH 88


 >gi|7439909|pir||H58208  protamine II - black rat snake (fragment)
            Length = 41

Frame -2 hits (HSPs):       ________________________________________      
                        __________________________________________________
Database sequence:     |                       |                       |  | 41
                       0                      20                      40

  Minus Strand HSPs:

 Score = 76 (26.8 bits), Expect = 0.19, P = 0.18
 Identities = 18/32 (56%), Positives = 19/32 (59%), Frame = -2

Query:   291 RAPGRGGGGGARGGERRGRRRSCRRS--RHGR 202
             R  GRGG  G R G RRGRRR  + S  R GR
Sbjct:     5 RRKGRGGKSGRRRGRRRGRRRGRKSSGRRRGR 36

 Score = 62 (21.8 bits), Expect = 7.1, P = 1.0
 Identities = 13/23 (56%), Positives = 14/23 (60%), Frame = -2

Query:   279 RGGGGGARGGERRGRRRSCRRSR 211
             R  G G + G RRGRRR  RR R
Sbjct:     5 RRKGRGGKSGRRRGRRRGRRRGR 27


 >gi|5441235|dbj|BAA82345.1|  (AB024360) ORF1 [TT virus]
            >gi|5456955|dbj|BAA82397.1| (AB024361) ORF1 [TT virus]
            Length = 53

Frame -1 hits (HSPs):                 _________                           
Frame -2 hits (HSPs):                             _____________________   
                        __________________________________________________
Database sequence:     |                 |                  |             | 53
                       0                20                 40

  Minus Strand HSPs:

 Score = 51 (18.0 bits), Expect = 0.21, Sum P(2) = 0.19
 Identities = 11/20 (55%), Positives = 11/20 (55%), Frame = -2

Query:   258 RGGERRGRRRSCRRSRHGRW 199
             R   R  RRR  RR R GRW
Sbjct:    31 RPRRRYRRRRHVRRRRRGRW 50

 Score = 42 (14.8 bits), Expect = 2.0, Sum P(2) = 0.87
 Identities = 11/22 (50%), Positives = 12/22 (54%), Frame = -2

Query:   246 RRGRRRSCRRSRH-GRWDQGNW 184
             RR  RR  RR RH  R  +G W
Sbjct:    29 RRRPRRRYRRRRHVRRRRRGRW 50

 Score = 41 (14.4 bits), Expect = 0.21, Sum P(2) = 0.19
 Identities = 6/10 (60%), Positives = 6/10 (60%), Frame = -1

Query:   283 WAWRRWRRSW 254
             W  R WRR W
Sbjct:    16 WKRRPWRRRW 25


 >gi|547943|sp||MUC3_HUMAN_2  [Segment 2 of 2] MUCIN 3A (INTESTINAL MUCIN 3A)
            >gi|107105|pir||B35690 mucin 3 (clone SIB139) - human (fragment)
            >gi|553594|gb|AAA63773.1| (M55406) mucin [Homo sapiens]
            Length = 85

Frame  1 hits (HSPs):       ________________________________              
                        __________________________________________________
Database sequence:     |           |          |           |           |   | 85
                       0          20         40          60          80

  Plus Strand HSPs:

 Score = 71 (25.0 bits), Expect = 0.70, P = 0.50
 Identities = 20/55 (36%), Positives = 29/55 (52%), Frame = +1

Query:   151 ASTITMPSTLKPVPLIPSSMSATAA*SSPTSSLSPTSAATSSTPRSTLSSITDSI 315
             +S  T  +T    P + SSM+AT   S  T S + +   T +T  ST +S+T SI
Sbjct:     8 SSMTTTETTSHSTPSLTSSMTATETTSHSTPSFTSSITTTETTSNST-ASLTSSI 61


 >gi|1082607|pir||S53366  mucin 5AC (clone MAR10) - human (fragment)
            >gi|563383|emb|CAA84035.1| (Z34281) mucin [Homo sapiens]
            Length = 62

Frame  1 hits (HSPs):     ________________________________________________
                        __________________________________________________
Database sequence:     |               |               |               |  | 62
                       0              20              40              60

  Plus Strand HSPs:

 Score = 70 (24.6 bits), Expect = 0.91, P = 0.60
 Identities = 22/59 (37%), Positives = 34/59 (57%), Frame = +1

Query:   148 EASTITMPSTLKPVPLIPSSMSA--TAA*SSPTSSLS--PTSAATSSTPRSTLSSITDS 312
             + ST + P+T        S+ SA  T+  S+P +S+S  PTS+ TS+   ST+S+ T S
Sbjct:     4 QTSTTSSPTTSTTSAPTTSTTSAPTTSTTSTPQTSISSAPTSSTTSAPTASTISAPTTS 62


 >gi|8096390|dbj|BAA95861.1|  (AP002070) hypothetical protein [Oryza sativa]
            >gi|8467943|dbj|BAA96567.1| (AP002480) hypothetical protein [Oryza
            sativa]
            Length = 95

Frame  1 hits (HSPs):       ____________________                          
                        __________________________________________________
Database sequence:     |          |         |          |         |        | 95
                       0         20        40         60        80

  Plus Strand HSPs:

 Score = 70 (24.6 bits), Expect = 0.91, P = 0.60
 Identities = 19/36 (52%), Positives = 23/36 (63%), Frame = +1

Query:   235 PTSSLSP--TSAATSSTPRSTLS-SITDSIHLQDPG 333
             PT+SLSP  TS AT+  P S+LS S T   H+ D G
Sbjct:    10 PTASLSPLSTSGATTDPPASSLSTSTTTEQHVGDGG 45


 >gi|2134211|pir||F58208  protamine II-5 - painted turtle
            Length = 47

Frame -2 hits (HSPs):         ________________________________            
                        __________________________________________________
Database sequence:     |                    |                    |        | 47
                       0                   20                   40

  Minus Strand HSPs:

 Score = 70 (24.6 bits), Expect = 0.92, P = 0.60
 Identities = 17/25 (68%), Positives = 17/25 (68%), Frame = -2

Query:   279 RGGGGGARGGERR--GRRRSCRRSR 211
             RGG GG RG  RR  GRRR  RRSR
Sbjct:     7 RGGRGGRRGRRRRRHGRRRRGRRSR 31

 Score = 70 (24.6 bits), Expect = 0.92, P = 0.60
 Identities = 19/30 (63%), Positives = 19/30 (63%), Frame = -2

Query:   279 RGGGGGARGGERR--GRRRSCRRSRH--GR 202
             RGG GG RG  RR  GRRR  RRSR   GR
Sbjct:     7 RGGRGGRRGRRRRRHGRRRRGRRSRERTGR 36


 >gi|2134207|pir||B58208  protamine II-1 - painted turtle
            Length = 45

Frame -2 hits (HSPs):         ____________________________                
                        __________________________________________________
Database sequence:     |                     |                     |      | 45
                       0                    20                    40

  Minus Strand HSPs:

 Score = 70 (24.6 bits), Expect = 0.92, P = 0.60
 Identities = 17/25 (68%), Positives = 17/25 (68%), Frame = -2

Query:   279 RGGGGGARGGERR--GRRRSCRRSR 211
             RGG GG RG  RR  GRRR  RRSR
Sbjct:     7 RGGRGGRRGRRRRRHGRRRRGRRSR 31


 >gi|7489465|pir||T04144  DNA binding protein - rice
            Length = 109

Frame -2 hits (HSPs):                 ______________________              
                        __________________________________________________
Database sequence:     |        |        |         |        |        |    | 109
                       0       20       40        60       80      100

  Minus Strand HSPs:

 Score = 76 (26.8 bits), Expect = 0.97, P = 0.62
 Identities = 21/46 (45%), Positives = 26/46 (56%), Frame = -2

Query:   339 NSTRILKV-DGISDAAERAPGRGGGGGARGGERRGRRRSCRRSRHGR 202
             N   ++KV     DAA  A GR G G  R  +RR + R+ RR RHGR
Sbjct:    33 NFGAVIKVCSSWVDAAAAAAGRRGDGQRRAAQRRPQVRA-RRRRHGR 78


 >gi|9628522  ref|NP_043398.1| regulatory protein E2 [Human papillomavirus type
            37] >gi|3024797|sp|Q80903|VE2_HPV37 REGULATORY PROTEIN E2
            >gi|1020230|gb|AAA79446.1| (U31786) regulatory protein E2 [Human
            papillomavirus type 37]
            Length = 454

Frame -2 hits (HSPs):                             ____________            
                        __________________________________________________
Database sequence:     |                |               |                || 454
                       0              150             300              450

  Minus Strand HSPs:

 Score = 92 (32.4 bits), Expect = 1.0, P = 0.64
 Identities = 31/100 (31%), Positives = 47/100 (47%), Frame = -2

Query:   369 KQRSSKPTTSNSTRILKVDGISDAAERAPGRGGGGGARGGERRGRRR--SCRRSRHGRWD 196
             ++++S PTT+ + +  + +  +    R+  RG    +RGG+RR RRR  S  R      D
Sbjct:   244 RRKASSPTTTAARQKRQGEDTATRRSRSTSRGKQATSRGGDRRRRRRERSYSRDTSSSPD 303

Query:   195 QGNWFQCTWHGNCRSLSESLS*CSSGTASASRAQGPRSPXXP 70
             +G   +       RS S SLS   S + S SR    R    P
Sbjct:   304 RGRGGRSRGGPETRSQSRSLS--RSRSRSRSRGSSSRGGVAP 343


 >gi|82087|pir||S19774  glycine-rich protein - tomato (fragment)
            >gi|19322|emb|CAA42538.1| (X59883) glycine-rich protein
            [Lycopersicon esculentum]
            Length = 82

Frame -2 hits (HSPs):                              ______________________ 
                        __________________________________________________
Database sequence:     |           |           |           |            | | 82
                       0          20          40          60           80

  Minus Strand HSPs:

 Score = 69 (24.3 bits), Expect = 1.2, P = 0.69
 Identities = 18/36 (50%), Positives = 18/36 (50%), Frame = -2

Query:   291 RAPGRGGGGGARGGERRGRRRSCRRSRHGRWDQGNW 184
             R  G GGGGG  GG  R   RS R    G  D GNW
Sbjct:    46 REGGYGGGGGGYGGGDRYNVRSSRGGGGGGSD-GNW 80


 >gi|111978|pir||S24169  mucin - rat
            Length = 292

Frame  1 hits (HSPs):         __________                                  
                        __________________________________________________
Database sequence:     |        |       |        |        |       |       | 292
                       0       50     100      150      200     250

  Plus Strand HSPs:

 Score = 88 (31.0 bits), Expect = 1.5, P = 0.77
 Identities = 19/54 (35%), Positives = 35/54 (64%), Frame = +1

Query:   151 ASTITMPSTLKPVPLIPSSMSATAA*SSPTSSLSPTSAATSSTPRSTLSSITDS 312
             +ST T  +T+   P  PS++S TA+ +SPT+  + +++ TS TP  T ++I ++
Sbjct:    37 SSTSTPTTTITETPSPPSTISETASSTSPTTESTSSTSTTSQTPTPTPTTIKET 90


 >gi|1582641|prf||2119210A  mucin [Homo sapiens]
            Length = 164

Frame  1 hits (HSPs):           ______________________________            
                        __________________________________________________
Database sequence:     |              |               |              |    | 164
                       0             50             100            150

  Plus Strand HSPs:

 Score = 83 (29.2 bits), Expect = 1.6, P = 0.80
 Identities = 32/95 (33%), Positives = 48/95 (50%), Frame = +1

Query:    55 STTRSRGXG*ARSLST*SRCCP*ATSRKRFREASTITMPSTLKP-VPLIPSSMS-ATAA* 228
             STT   G   +   +T +   P  TS       ST + P+T  P  P   ++++  T+  
Sbjct:    30 STTSGPGTTPSPVPTTSTTSAP-TTSTTSAPTTSTTSAPTTSTPSAPTTSTTLAPTTSTT 88

Query:   229 SSPTSSLS--PTSAATSSTPRSTLSSITDSIHLQDPG 333
             S+PT+S +  PTS+ TS+   ST S+ T SI    PG
Sbjct:    89 SAPTTSTTSTPTSSTTSTPQTSTTSASTTSI-TSGPG 124


 >gi|627549|pir||C33532  mucin SMUC-42 - human (fragment)
            >gi|188876|gb|AAA36335.1| (M22406) intestinal mucin [Homo sapiens]
            Length = 76

Frame  1 hits (HSPs):                     ______________________________  
                        __________________________________________________
Database sequence:     |            |            |            |           | 76
                       0           20           40           60

  Plus Strand HSPs:

 Score = 67 (23.6 bits), Expect = 2.0, P = 0.86
 Identities = 16/45 (35%), Positives = 25/45 (55%), Frame = +1

Query:   160 ITMPSTLKPVPLIPSSMSATAA*SSPTSSLSPTSAATSS-TPRST 291
             IT  +T+ P P    + + T    S T++++PT   T + TPRST
Sbjct:    29 ITTTTTVTPTPTPTGTQTPTTTPISTTTTVTPTPTPTGTQTPRST 73


 >gi|2134209|pir||D58208  protamine II-3 - painted turtle
            Length = 45

Frame -2 hits (HSPs):         ____________________________                
                        __________________________________________________
Database sequence:     |                     |                     |      | 45
                       0                    20                    40

  Minus Strand HSPs:

 Score = 66 (23.2 bits), Expect = 2.5, P = 0.92
 Identities = 16/25 (64%), Positives = 16/25 (64%), Frame = -2

Query:   279 RGGGGGARGGERR--GRRRSCRRSR 211
             RGG GG RG  RR  GRRR  RR R
Sbjct:     7 RGGRGGRRGRRRRRHGRRRRGRRGR 31


 >gi|2135764|pir||I53641  mucin 5AC - human (fragment) >gi|945219|gb|AAC41774.1|
            (L46721) mucin [Homo sapiens]
            Length = 164

Frame  1 hits (HSPs):           ____________________________              
                        __________________________________________________
Database sequence:     |              |               |              |    | 164
                       0             50             100            150

  Plus Strand HSPs:

 Score = 81 (28.5 bits), Expect = 2.9, P = 0.94
 Identities = 30/90 (33%), Positives = 46/90 (51%), Frame = +1

Query:    55 STTRSRGXG*ARSLST*SRCCP*ATSRKRFREASTITMPSTLKP-VPLIPSSMS-ATAA* 228
             STT   G   +   +T +   P  TS       ST + P+T  P  P   ++++  T+  
Sbjct:    30 STTSGPGTTPSPVPTTSTTSAP-TTSTTSAPTTSTTSAPTTSTPSAPTTSTTLAPTTSTT 88

Query:   229 SSPTSSLS--PTSAATSSTPRSTLSSITDSI 315
             S+PT+S +  PTS+ TS+   ST S+ T SI
Sbjct:    89 SAPTTSTTSTPTSSTTSTPQTSTTSASTTSI 119


 >gi|1169890|sp|P43029|GDF7_MOUSE  GROWTH/DIFFERENTIATION FACTOR 7 PRECURSOR
            (GDF-7) >gi|631648|pir||S43296 bone morphogenetic protein-related
            protein (GDF7) - mouse >gi|488466|gb|AAA18780.1| (U08339) GDF7 [Mus
            musculus]
            Length = 151

Frame -2 hits (HSPs):            ____________                             
Annotated Domains:      __  __________  __________________________________
                        __________________________________________________
Database sequence:     |                |               |                || 151
                       0               50             100              150
__________________

Annotated Domains:
   Entrez               Domain: POLY-ARG.                        1..5
   Entrez               Domain: POLY-GLY.                        16..41
   PFAM                 TGF-beta: Transforming growth factor bet 50..151
   PROSITE              TGF_BETA: TGF-beta family signature.     68..83
__________________


  Minus Strand HSPs:

 Score = 80 (28.2 bits), Expect = 2.9, P = 0.95
 Identities = 18/34 (52%), Positives = 21/34 (61%), Frame = -2

Query:   282 GRGGGGGA-RGGERRGRRRSCRRSRHGRWDQGNW 184
             G GGGGGA RG  RRGR R  R+S H  + +  W
Sbjct:    31 GGGGGGGAGRGHGRRGRSRCSRKSLHVDFKELGW 64


 >gi|5803207  ref|NP_006749.1| U2(RNU2) small nuclear RNA auxillary factor 1
            (non-standard symbol); U2(RNU2) small nuclear RNA auxillary factor
            1; human U2 snRNP auxiliary factor small subunit [Homo sapiens]
            >gi|267187|sp|Q01081|U2AG_HUMAN SPLICING FACTOR U2AF 35 KDA SUBUNIT
            (U2 AUXILIARY FACTOR 35 KDA SUBUNIT) (U2 SNRNP AUXILIARY FACTOR
            SMALL SUBUNIT) >gi|423138|pir||A46179 U2 snRNP auxiliary factor
            small chain - human >gi|338263|gb|AAA36619.1| (M96982) U2 snRNP
            auxiliary factor small subunit [Homo sapiens]
            >gi|7768747|dbj|BAA95534.1| (AP001748) U2 snRNP auxiliary factor
            small subunit [Homo sapiens] >gi|12654677|gb|AAH01177.1|AAH01177
            (BC001177) U2(RNU2) small nuclear RNA auxillary factor 1
            (non-standard symbol) [Homo sapiens]
            Length = 240

Frame -2 hits (HSPs):                                             ________
                        __________________________________________________
Database sequence:     |          |         |          |         |        | 240
                       0         50       100        150       200

  Minus Strand HSPs:

 Score = 84 (29.6 bits), Expect = 3.1, P = 0.96
 Identities = 20/37 (54%), Positives = 23/37 (62%), Frame = -2

Query:   306 SDAAERAPGRGGGGGARGGER-RGRRRSCRRSRHGRW 199
             S + +R  G GGGGG  GG R R RRRS  R R GR+
Sbjct:   204 SRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGRF 240


 >gi|12742621  ref|XP_009787.2| U2(RNU2) small nuclear RNA auxillary factor 1
            (non-standard symbol) [Homo sapiens]
            Length = 252

Frame -2 hits (HSPs):                                             ________
                        __________________________________________________
Database sequence:     |         |         |         |         |         || 252
                       0        50       100       150       200       250

  Minus Strand HSPs:

 Score = 84 (29.6 bits), Expect = 3.4, P = 0.97
 Identities = 20/37 (54%), Positives = 23/37 (62%), Frame = -2

Query:   306 SDAAERAPGRGGGGGARGGER-RGRRRSCRRSRHGRW 199
             S + +R  G GGGGG  GG R R RRRS  R R GR+
Sbjct:   216 SRSRDRGRGGGGGGGGGGGGRERDRRRSRDRERSGRF 252


 >gi|399783|sp|Q01157|GRW1_LYCES  GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN
            (CLONE W10-1) >gi|388257|emb|CAA39222.1| (X55693) glycine-rich
            protein [Lycopersicon esculentum]
            Length = 43

Frame -2 hits (HSPs):                             ______________________  
Annotated Domains:      _____________________________________________   __
                        __________________________________________________
Database sequence:     |                      |                      |    | 43
                       0                     20                     40
__________________

Annotated Domains:
   Entrez               Domain: 7 X TANDEM REPEATS OF G(2,6)-R.  1..39
   Entrez               glycosylation site: POTENTIAL.           20
   Entrez               glycosylation site: POTENTIAL.           43
__________________


  Minus Strand HSPs:

 Score = 64 (22.5 bits), Expect = 4.3, P = 0.99
 Identities = 13/20 (65%), Positives = 14/20 (70%), Frame = -2

Query:   282 GRGGGGGARGGERRGRRRSC 223
             GRGGGGG RGG   G R+ C
Sbjct:    24 GRGGGGG-RGGRGGGGRKCC 42


 >gi|7489007|pir||S14979  glycine-rich protein (clone uE-7) - tomato (fragment)
            >gi|1345532|emb|CAA39220.1| (X55690) glycine-rich protein
            [Lycopersicon esculentum]
            Length = 36

Frame -2 hits (HSPs):                         __________________________  
                        __________________________________________________
Database sequence:     |                          |                       | 36
                       0                         20

  Minus Strand HSPs:

 Score = 64 (22.5 bits), Expect = 4.3, P = 0.99
 Identities = 13/20 (65%), Positives = 14/20 (70%), Frame = -2

Query:   282 GRGGGGGARGGERRGRRRSC 223
             GRGGGGG RGG   G R+ C
Sbjct:    17 GRGGGGG-RGGRGGGGRKCC 35


 >gi|2134206|pir||A58208  protamine I-1 - painted turtle
            Length = 58

Frame -2 hits (HSPs):          ______________________________             
Annotated Domains:      __________                                        
                        __________________________________________________
Database sequence:     |                |                |                | 58
                       0               20               40
__________________

Annotated Domains:
   PROSITE              PROTAMINE_P1: Protamine P1 signature.    1..12
__________________


  Minus Strand HSPs:

 Score = 64 (22.5 bits), Expect = 4.3, P = 0.99
 Identities = 17/35 (48%), Positives = 18/35 (51%), Frame = -2

Query:   306 SDAAERAPGRGGGGGARGGERRGRRRSCRRSRHGR 202
             S +  R   RGG GG RG  RR R    RR R GR
Sbjct:    10 SRSRRRRRRRGGRGGRRGRRRR-RHGQRRRGRRGR 43


 >gi|2134210|pir||E58208  protamine II-4 - painted turtle
            Length = 47

Frame -2 hits (HSPs):         ___________________________                 
                        __________________________________________________
Database sequence:     |                    |                    |        | 47
                       0                   20                   40

  Minus Strand HSPs:

 Score = 64 (22.5 bits), Expect = 4.3, P = 0.99
 Identities = 16/25 (64%), Positives = 16/25 (64%), Frame = -2

Query:   279 RGGGGGARGGERR--GRRRSCRRSR 211
             RGG GG  G  RR  GRRR  RRSR
Sbjct:     7 RGGRGGRSGRRRRRHGRRRRGRRSR 31


 >gi|11346533|pir||T44657  protein GP80 [imported] - bovine herpesvirus 4
            >gi|1834361|emb|CAB06616.1| (Z84818) GP80 [Bovine herpesvirus 4]
            Length = 273

Frame  1 hits (HSPs):           ____________                              
                        __________________________________________________
Database sequence:     |        |         |        |        |        |    | 273
                       0       50       100      150      200      250

  Plus Strand HSPs:

 Score = 83 (29.2 bits), Expect = 5.1, P = 0.99
 Identities = 24/64 (37%), Positives = 39/64 (60%), Frame = +1

Query:   124 ATSRKRFREASTITMPSTLKPVPLIPSSMSATAA*SSPTSS-LSPTSAATSSTPRSTLSS 300
             +TS      AST ++ S       +PS+  AT++ SSPTS+  + T+ ATSST  +T SS
Sbjct:    48 STSTSTSSNASTSSVSSPSPSSSSVPST--ATSSSSSPTSTPTATTTTATSSTSTNTTSS 105

Query:   301 ITDSI 315
             ++ ++
Sbjct:   106 VSTTV 110


 >gi|7297949|gb|AAF53193.1|  (AE003636) SC35 gene product [alt 1] [Drosophila
            melanogaster]
            Length = 112

Frame -2 hits (HSPs):            __________________                       
                        __________________________________________________
Database sequence:     |                     |                      |     | 112
                       0                    50                    100

  Minus Strand HSPs:

 Score = 73 (25.7 bits), Expect = 5.5, P = 1.0
 Identities = 20/39 (51%), Positives = 21/39 (53%), Frame = -2

Query:   306 SDAAERAPGR--GGGGGARGGERRGRRRSC--RRSRHGR 202
             S     + GR  GGGGG  GG RR R RS   RRSR  R
Sbjct:    22 SSPTRSSSGRRGGGGGGGSGGRRRSRSRSPMRRRSRSPR 60


 >gi|11362263|pir||T46740  microfilarial sheath protein SHP3 [imported] -
            Litomosoides sigmodontis >gi|6012073|gb|AAB82017.2| (U54556)
            microfilarial sheath protein SHP3 [Litomosoides sigmodontis]
            Length = 354

Frame  1 hits (HSPs):           ____________                              
                        __________________________________________________
Database sequence:     |                     |                    |       | 354
                       0                   150                  300

  Plus Strand HSPs:

 Score = 84 (29.6 bits), Expect = 5.9, P = 1.0
 Identities = 20/56 (35%), Positives = 32/56 (57%), Frame = +1

Query:   145 REASTITMPSTLKPVPLIPSSMSATAA*SSPTSSLSPTSAATSSTPRSTLSSITDS 312
             +  ++ T  ST KP     SS + T   S+ +S+  PT++ TSST ++T +S T S
Sbjct:    64 KTTTSSTTSSTTKPTTSKTSSTTKTTTASTTSSTTKPTTSKTSSTTKTTTASTTSS 119

 Score = 83 (29.2 bits), Expect = 7.6, P = 1.0
 Identities = 20/50 (40%), Positives = 29/50 (58%), Frame = +1

Query:   163 TMPSTLKPVPLIPSSMSATAA*SSPTSSLSPTSAATSSTPRSTLSSITDS 312
             T  ST KP     SS + T   S+ +S+  PT++ TSST ++T +S T S
Sbjct:    93 TTSSTTKPTTSKTSSTTKTTTASTTSSTTKPTTSKTSSTTKTTTASTTSS 142


 >gi|7292702|gb|AAF48099.1|  (AE003487) CG15741 gene product [Drosophila
            melanogaster]
            Length = 135

Frame  1 hits (HSPs):          ____________________                       
                        __________________________________________________
Database sequence:     |                  |                 |             | 135
                       0                 50               100

  Plus Strand HSPs:

 Score = 76 (26.8 bits), Expect = 6.0, P = 1.0
 Identities = 20/55 (36%), Positives = 34/55 (61%), Frame = +1

Query:   151 ASTITMPSTLKPVPLIPSSMSATAA*SSPTSSLSPTSAATSSTPRSTLSSITDSI 315
             +ST    ST       P+S ++  + +SPTSS SPTS+++SS+  ST ++ T ++
Sbjct:    20 SSTSPASSTSPASSTSPTSSTSPTSSTSPTSSTSPTSSSSSSSS-STATTTTTTV 73


 >gi|2911569|emb|CAA75473.1|  (Y15176) putative [Human papillomavirus type 80]
            Length = 444

Frame -2 hits (HSPs):                             ____________            
                        __________________________________________________
Database sequence:     |                |                |                | 444
                       0              150              300

  Minus Strand HSPs:

 Score = 85 (29.9 bits), Expect = 6.2, P = 1.0
 Identities = 37/98 (37%), Positives = 47/98 (47%), Frame = -2

Query:   369 KQRSSKPTTSNSTRILKVDGI----SDAAERAPGRGGGGGARGGERRGRRRS------CR 220
             K+++S PTT+ +TR  K  G     S    R+  RG     RGG+RR RRRS        
Sbjct:   233 KRKASSPTTT-TTRRQKRQGQRQEDSTRRSRSTSRGRQQIPRGGDRRRRRRSRETSTSSE 291

Query:   219 RSRHGRWDQGNWFQCTWHGNCRSLSESLS*CSSGTASASRAQG 91
             R R GR  +G     T     RSLS S S   S +  +S   G
Sbjct:   292 RGRGGRSRRGP----TTRSQSRSLSRSRSRSKSRSGGSSSGGG 330


 >gi|7510373|pir||T33925  hypothetical protein Y66H1A.4 - Caenorhabditis elegans
            >gi|4226151|gb|AAD12858.1| (AF125462) similar GAR1 related proteins
            (small nucleolar protein required for pre-rRNA splicing)
            [Caenorhabditis elegans]
            Length = 276

Frame -2 hits (HSPs):      __________                                     
                        __________________________________________________
Database sequence:     |        |        |        |         |        |    | 276
                       0       50      100      150       200      250

  Minus Strand HSPs:

 Score = 82 (28.9 bits), Expect = 6.8, P = 1.0
 Identities = 22/54 (40%), Positives = 30/54 (55%), Frame = -2

Query:   339 NSTRILKVDGISDAAERAPGRGGGGGARGGERRGRRRSCRRSRHGRWDQGNWFQ 178
             N+ ++ K+  IS+ + R  GRGGGGG RGG   G     R  R G  D+G  F+
Sbjct:    20 NNFKVQKLFDISEMSFRG-GRGGGGGFRGGRGGGGGGGFRGGRGG--DRGGGFR 70


 >gi|1911629|gb|AAB50771.1|  (S83377) huntingtin protein {poly Glu and poly Pro
            region} [gorilla, white blood cells, Peptide Partial, 33 aa]
            [Gorilla gorilla]
            Length = 33

Frame  2 hits (HSPs):                   _____________________________     
                        __________________________________________________
Database sequence:     |                            |                     | 33
                       0                           20

  Plus Strand HSPs:

 Score = 62 (21.8 bits), Expect = 7.0, P = 1.0
 Identities = 12/19 (63%), Positives = 13/19 (68%), Frame = +2

Query:   233 LLPRRSP-PRAPPPPPRPG 286
             LLP+  P P  PPPPP PG
Sbjct:    12 LLPQPQPQPPPPPPPPPPG 30


 >gi|7940276|gb|AAF70835.1|AC003113_2  (AC003113) F24O1.6 [Arabidopsis thaliana]
            Length = 70

Frame  2 hits (HSPs):                             ____________            
                        __________________________________________________
Database sequence:     |             |             |              |       | 70
                       0            20            40             60

  Plus Strand HSPs:

 Score = 62 (21.8 bits), Expect = 7.0, P = 1.0
 Identities = 11/17 (64%), Positives = 11/17 (64%), Frame = +2

Query:   239 PRRSPPRAPPPPPRPGA 289
             P   PPR  PPPP PGA
Sbjct:    38 PPPPPPRPDPPPPLPGA 54


 >gi|8927174|gb|AAF81987.1|AF178693_1  (AF178693) gp15 antigen [Cryptosporidium
            parvum]
            Length = 68

Frame  1 hits (HSPs):          __________________________________________ 
                        __________________________________________________
Database sequence:     |             |              |              |      | 68
                       0            20             40             60

  Plus Strand HSPs:

 Score = 62 (21.8 bits), Expect = 7.0, P = 1.0
 Identities = 19/59 (32%), Positives = 33/59 (55%), Frame = +1

Query:   151 ASTITMPSTLKPVPLIPSSMSATAA*SSPTSSLSPTSAATSSTPRSTLSSITDSIHLQD 327
             A  + +  TLK VP+  SS S+++  SS +SS S +S+ ++  P +   +  D+   QD
Sbjct:    11 APAVPLRGTLKDVPVEGSSSSSSS--SSSSSSSSSSSSTSTVAPANKARTGEDAEGSQD 67


 >gi|11527396  ref|NP_068527.1| metastasis-associated GPI-anchored protein
            [Rattus norvegicus] >gi|2764583|emb|CAA04497.1| (AJ001043)
            metastasis-associated GPI-anchored protein [Rattus norvegicus]
            Length = 352

Frame  1 hits (HSPs):                               _____________         
                        __________________________________________________
Database sequence:     |                     |                    |       | 352
                       0                   150                  300

  Plus Strand HSPs:

 Score = 83 (29.2 bits), Expect = 7.5, P = 1.0
 Identities = 29/90 (32%), Positives = 43/90 (47%), Frame = +1

Query:    52 DSTTRSRGXG*ARSLST*SRCC--P*ATSRKRFREASTITMPS-TLKPVPLIPSSMSATA 222
             ++ TR    G   +LS    CC  P   S  R +   +  +P   L P P  P+  + T 
Sbjct:   199 EACTRDGVTGPGFTLS--GSCCQGPRCNSDLRNKTYFSPRIPPLVLLPPPTTPAPSTRTQ 256

Query:   223 A*SSPTSSLSPTSAATSSTPRSTLSSITDSIH 318
               SS TS+ +PT+A T+  P +  +S T S H
Sbjct:   257 NSSSTTSTTAPTTATTTIKPTTVQASHTSSTH 288


 >gi|4506819  ref|NP_002969.1| sodium channel, nonvoltage-gated 1, delta; Sodium
            channel, voltage-gated, type I, delta polypeptide; dNaCh [Homo
            sapiens] >gi|1710872|sp|P51172|SCAD_HUMAN AMILORIDE-SENSITIVE
            SODIUM CHANNEL DELTA-SUBUNIT (EPITHELIAL NA+ CHANNEL DELTA SUBUNIT)
            (DELTA ENAC) (NONVOLTAGE-GATED SODIUM CHANNEL 1 DELTA SUBUNIT)
            (SCNED) (DELTA NACH) >gi|2134746|pir||I39196 amiloride sensitive
            sodium channel delta subunit - human >gi|1066457|gb|AAC50283.1|
            (U38254) amiloride sensitive sodium channel delta subunit [Homo
            sapiens]
            Length = 638

Frame  2 hits (HSPs):     ___                                             
                        __________________________________________________
Database sequence:     |           |           |           |          |   | 638
                       0         150         300         450        600

  Plus Strand HSPs:

 Score = 86 (30.3 bits), Expect = 7.6, P = 1.0
 Identities = 15/32 (46%), Positives = 21/32 (65%), Frame = +2

Query:   239 PRRSPPRAPPPPPRPGARSAASLIPSTFRILV 334
             PR  PP APPPPP+ G +     +P++FR L+
Sbjct:    29 PRPGPPSAPPPPPKEGHQEGLVELPASFRELL 60


 >gi|2724058|gb|AAB92659.1|  (AF038165) epithelial sodium channel delta subunit
            [Pan troglodytes]
            Length = 638

Frame  2 hits (HSPs):     ___                                             
                        __________________________________________________
Database sequence:     |           |           |           |          |   | 638
                       0         150         300         450        600

  Plus Strand HSPs:

 Score = 86 (30.3 bits), Expect = 7.6, P = 1.0
 Identities = 15/32 (46%), Positives = 21/32 (65%), Frame = +2

Query:   239 PRRSPPRAPPPPPRPGARSAASLIPSTFRILV 334
             PR  PP APPPPP+ G +     +P++FR L+
Sbjct:    29 PRPGPPSAPPPPPKEGHQEGLVELPASFRELL 60


 >gi|12719723  ref|XP_001591.2| sodium channel, nonvoltage-gated 1, delta [Homo
            sapiens]
            Length = 638

Frame  2 hits (HSPs):     ___                                             
                        __________________________________________________
Database sequence:     |           |           |           |          |   | 638
                       0         150         300         450        600

  Plus Strand HSPs:

 Score = 86 (30.3 bits), Expect = 7.6, P = 1.0
 Identities = 15/32 (46%), Positives = 21/32 (65%), Frame = +2

Query:   239 PRRSPPRAPPPPPRPGARSAASLIPSTFRILV 334
             PR  PP APPPPP+ G +     +P++FR L+
Sbjct:    29 PRPGPPSAPPPPPKEGHQEGLVELPASFRELL 60


 >gi|9635108  ref|NP_057754.1| R-LORF13 [Gallid herpesvirus 2]
            >gi|7673185|gb|AAF66809.1|AF147806_73 (AF147806) R-LORF13 [Gallid
            herpesvirus 2]
            Length = 104

Frame -2 hits (HSPs):                      __________________________     
                        __________________________________________________
Database sequence:     |         |        |         |        |         |  | 104
                       0        20       40        60       80       100

  Minus Strand HSPs:

 Score = 70 (24.6 bits), Expect = 8.2, P = 1.0
 Identities = 22/53 (41%), Positives = 27/53 (50%), Frame = -2

Query:   333 TRILKVDGISDAAERAPGRGGGGGARGGERRGR----RRSCRRSRH---GRWDQ 193
             +R  + DG+     R+PG   GGG R G RRGR    R   RR R    GR D+
Sbjct:    41 SRTRRPDGVL-GRPRSPGWKRGGGPRRGRRRGRAWENRSGMRRGRREMRGRRDE 93


 >gi|7504243|pir||T15188  hypothetical protein F55A12.6 - Caenorhabditis elegans
            >gi|2088666|gb|AAB54124.1| (AF003130) F55A12.6 gene product
            [Caenorhabditis elegans]
            Length = 448

Frame -2 hits (HSPs):                              _________              
                        __________________________________________________
Database sequence:     |                |                |                | 448
                       0              150              300

  Minus Strand HSPs:

 Score = 84 (29.6 bits), Expect = 8.3, P = 1.0
 Identities = 23/70 (32%), Positives = 32/70 (45%), Frame = -2

Query:   378 QILKQRSSKPTTS--NSTRILK---VDGISDAAERAPGRGGGGGARGGERRGRRRSCRRS 214
             ++++ +  KP  S  + T+ LK      +   A+R  GRGGGG   GG R G  R     
Sbjct:   247 RVIRNQGLKPNVSLFSQTKTLKEFFFFSVESDAQRGGGRGGGGSRGGGGRGGGGRGGGGG 306

Query:   213 RHGRWDQGNW 184
             R G    G W
Sbjct:   307 RGGGGRGGGW 316


 >gi|322758|pir||PQ0477  pistil extensin-like protein (clone pMG09) - common
            tobacco  (fragment)
            Length = 80

Frame  2 hits (HSPs):              _______________                        
                        __________________________________________________
Database sequence:     |           |            |           |             | 80
                       0          20           40          60

  Plus Strand HSPs:

 Score = 61 (21.5 bits), Expect = 9.1, P = 1.0
 Identities = 12/25 (48%), Positives = 14/25 (56%), Frame = +2

Query:   239 PRRSPPRAPPPPPRPGARSAASLIP 313
             P   PP+ PPPPP P A+   S  P
Sbjct:    19 PLSQPPKPPPPPPPP-AKQPPSAKP 42


 >gi|4008584|emb|CAA12281.1|  (AJ224997) huntingtin [Rattus norvegicus]
            Length = 67

Frame  2 hits (HSPs):                      ___________                    
                        __________________________________________________
Database sequence:     |              |              |              |     | 67
                       0             20             40             60

  Plus Strand HSPs:

 Score = 61 (21.5 bits), Expect = 9.1, P = 1.0
 Identities = 9/15 (60%), Positives = 12/15 (80%), Frame = +2

Query:   239 PRRSPPRAPPPPPRP 283
             P ++PP  PPPPP+P
Sbjct:    27 PPQAPPPPPPPPPQP 41


 >gi|100219|pir||S14985  glycine-rich protein (clone uK-4) - tomato
            >gi|1345534|emb|CAA39225.1| (X55696) glycine-rich protein
            [Lycopersicon esculentum]
            Length = 59

Frame -2 hits (HSPs):                      ______________                 
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                |                |                | 59
                       0               20               40
__________________

Annotated Domains:
   DOMO                 DM05815:                                 1..59
__________________


  Minus Strand HSPs:

 Score = 61 (21.5 bits), Expect = 9.2, P = 1.0
 Identities = 12/16 (75%), Positives = 12/16 (75%), Frame = -2

Query:   282 GRGGGGGARGGERRGR 235
             GRGGGGG  GG  RGR
Sbjct:    24 GRGGGGGRFGGGGRGR 39


 >gi|266845|sp|P30258|PRT3_SCYCA  PROTAMINE Z3 (SCYLLIORHININE Z3)
            >gi|422544|pir||S29829 protamine Z3 - smaller spotted catshark
            >gi|299275|gb|AAB25749.1| protamine Z3 [Scylliorhinus
            caniculus=dog-fish, Peptide, 37 aa] >gi|445971|prf||1911213A
            protamine Z3 [Scyliorhinus canicula]
            Length = 37

Frame -2 hits (HSPs):   ______________________________________________    
Annotated Domains:       _______________________________________________  
                        __________________________________________________
Database sequence:     |                         |                        | 37
                       0                        20
__________________

Annotated Domains:
   PRODOM               PD001830: HSP1(29) VE2(21) GAG(12)       2..36
__________________


  Minus Strand HSPs:

 Score = 61 (21.5 bits), Expect = 9.2, P = 1.0
 Identities = 17/34 (50%), Positives = 18/34 (52%), Frame = -2

Query:   300 AAERAPGRGGGGGARGGERRGRRRSCRRS-RHGR 202
             A  R+    G G  RGG RR RRR  RR  R GR
Sbjct:     1 ARSRSRRSYGRGRRRGGRRRRRRRRRRRGGRRGR 34


 >gi|2134208|pir||C58208  protamine II-2 - painted turtle
            Length = 45

Frame -2 hits (HSPs):         ____________________________                
                        __________________________________________________
Database sequence:     |                     |                     |      | 45
                       0                    20                    40

  Minus Strand HSPs:

 Score = 61 (21.5 bits), Expect = 9.2, P = 1.0
 Identities = 15/25 (60%), Positives = 15/25 (60%), Frame = -2

Query:   279 RGGGGGARGGERR--GRRRSCRRSR 211
             RGG GG RG  RR  GRRR   R R
Sbjct:     7 RGGRGGRRGRRRRRHGRRRRGHRGR 31


 >gi|8099235|gb|AAF72083.1|AC025098_17  (AC025098) Hypothetical protein [Oryza
            sativa]
            Length = 154

Frame  2 hits (HSPs):                                     ________________
                        __________________________________________________
Database sequence:     |               |                |               | | 154
                       0              50              100             150

  Plus Strand HSPs:

 Score = 76 (26.8 bits), Expect = 9.6, P = 1.0
 Identities = 19/48 (39%), Positives = 24/48 (50%), Frame = +2

Query:   206 PCLLRRHDLLLPRRSPPRAPP--PPPRPGARSAASLIPSTFRILVELE 343
             P   RRH +++PRRS    PP   PPR G     S +P   R+  E E
Sbjct:   106 PSAARRHGVVVPRRSAAAFPPRAEPPRLGPSRWPSAVPPLHRMREEEE 153


 >gi|140547|sp|P25653|FIG2_YEAST  FACTOR INDUCED GENE 2 >gi|283309|pir||S25345
            probable membrane protein YCR089w - yeast (Saccharomyces
            cerevisiae) >gi|1907227|emb|CAA42254.1| (X59720) YCR089w, len:1609
            [Saccharomyces cerevisiae]
            Length = 1609

Frame  1 hits (HSPs):                                         ___         
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |               |               |              |   | 1609
                       0             500            1000           1500
__________________

Annotated Domains:
   DOMO                 DM00474:                                 383..454
   DOMO                 DM00474:                                 456..491
   DOMO                 DM00474:                                 493..563
   DOMO                 DM00474:                                 565..620
   DOMO                 DM05216:                                 745..816
   DOMO                 DM05216:                                 877..937
   DOMO                 DM05216:                                 939..999
   DOMO                 DM00474:                                 1108..1166
   DOMO                 DM00474:                                 1168..1247
   PRODOM               PD109595: FIG2_YEAST                     1..113
   PRODOM               PD000651: VL2(74) O18758(34) MUC2(10)    115..385
   PRODOM               PD154737: FIG2_YEAST                     387..425
   PRODOM               PD000651: VL2(74) O18758(34) MUC2(10)    427..599
   PRODOM               PD072981: FIG2_YEAST                     601..645
   PRODOM               PD000651: VL2(74) O18758(34) MUC2(10)    647..912
   PRODOM               PD132653: FIG2_YEAST                     914..964
   PRODOM               PD000651: VL2(74) O18758(34) MUC2(10)    966..1217
   PRODOM               PD046266: FIG2_YEAST                     1219..1247
   PRODOM               PD000651: VL2(74) O18758(34) MUC2(10)    1254..1550
   PRODOM               PD118890: FIG2_YEAST                     1552..1608
__________________


  Plus Strand HSPs:

 Score = 89 (31.3 bits), Expect = 9.9, P = 1.0
 Identities = 29/65 (44%), Positives = 38/65 (58%), Frame = +1

Query:   127 TSRKRFREASTITMPSTLKPVPLIPSSMSATAA*SSPTSSLS---PTSAATSST-PRST- 291
             +S   F   +  T+ ST   VPL+PSS S +A+  S TS LS   P+ A TSST P +T 
Sbjct:  1255 SSSSSFSTTTASTLTSTHTSVPLLPSSSSISASSPSSTSLLSTSLPSPAFTSSTLPTATA 1314

Query:   292 LSSIT 306
             +SS T
Sbjct:  1315 VSSST 1319


 >gi|10383809  ref|NP_010013.2| predicted GPI-anchored cell wall protein; Fig2p
            [Saccharomyces cerevisiae]
            Length = 1609

Frame  1 hits (HSPs):                                         ___         
                        __________________________________________________
Database sequence:     |               |               |              |   | 1609
                       0             500            1000           1500

  Plus Strand HSPs:

 Score = 89 (31.3 bits), Expect = 9.9, P = 1.0
 Identities = 29/65 (44%), Positives = 38/65 (58%), Frame = +1

Query:   127 TSRKRFREASTITMPSTLKPVPLIPSSMSATAA*SSPTSSLS---PTSAATSST-PRST- 291
             +S   F   +  T+ ST   VPL+PSS S +A+  S TS LS   P+ A TSST P +T 
Sbjct:  1255 SSSSSFSTTTASTLTSTHTSVPLLPSSSSISASSPSSTSLLSTSLPSPAFTSSTLPTATA 1314

Query:   292 LSSIT 306
             +SS T
Sbjct:  1315 VSSST 1319


Parameters:
  filter=none
  matrix=BLOSUM62
  V=50
  B=50
  E=10
  gi
  H=1
  sort_by_pvalue
  echofilter

  ctxfactor=5.97

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   Std.    0   BLOSUM62                                 0.318   0.135   0.401  
   +3      0   BLOSUM62        0.318   0.135   0.401    0.345   0.152   0.515  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +2      0   BLOSUM62        0.318   0.135   0.401    0.346   0.156   0.530  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +1      0   BLOSUM62        0.318   0.135   0.401    0.359   0.154   0.559  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -1      0   BLOSUM62        0.318   0.135   0.401    0.354   0.155   0.588  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -2      0   BLOSUM62        0.318   0.135   0.401    0.334   0.142   0.464  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -3      0   BLOSUM62        0.318   0.135   0.401    0.345   0.154   0.498  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +3      0      218       201       10.  77 3  12 22  0.094   35
                                                    31  0.10    38
   +2      0      219       201       10.  77 3  12 22  0.094   35
                                                    31  0.10    38
   +1      0      219       201       10.  77 3  12 22  0.094   35
                                                    31  0.10    38
   -1      0      219       200       10.  77 3  12 22  0.094   35
                                                    31  0.10    38
   -2      0      219       202       10.  77 3  12 22  0.095   35
                                                    31  0.11    38
   -3      0      218       201       10.  77 3  12 22  0.094   35
                                                    31  0.10    38


Statistics:

  Database:  /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
    Title:  nr
    Release date:  unknown
    Posted date:  4:06 PM CST Feb 28, 2001
    Format:  BLAST
  # of letters in database:  197,782,623
  # of sequences in database:  625,274
  # of database sequences satisfying E:  50
  No. of states in DFA:  595 (59 KB)
  Total size of DFA:  219 KB (256 KB)
  Time to generate neighborhood:  0.02u 0.00s 0.02t  Elapsed: 00:00:00
  No. of threads or processors used:  6
  Search cpu time:  214.26u 1.22s 215.48t  Elapsed: 00:00:38
  Total cpu time:  214.33u 1.24s 215.57t  Elapsed: 00:00:38
  Start:  Mon Oct  1 17:55:02 2001   End:  Mon Oct  1 17:55:40 2001


Annotated Domains Database:   March 14, 2000 

Release Date:  March 14, 2000