Cancer Genome Anatomy Project

NCI > CGAP > GAI > SNP Maps > Chr 13 > SNPs Localized to Interval 4

D13S263 - D13S153 31.3 cM - 40.8 cM     /     132.87 cR - 151.97 cR

Chromosome:	1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 X Interval: all 0 1 2 3 4 5 6 7 8 9 10 11 12
Tissue:	any adipose adrenal cortex adrenal medulla b-cell blood bone bone marrow brain breast / mammary gland cerebellum cerebrum cervix colon ear (inner) esophagus eye gastrointestinal tract genitourinary system germ cell head and neck heart kidney liver lung lymph node muscle nervous ovary pancreas pancreatic islet parathyroid peripheral nervous system pineal gland pituitary gland placenta prostate retina salivary gland skin soft tissue spleen stomach synovium t-cell testis thymus thyroid uterus vascular whole body uncharacterized tissue [ ? ]
Histology:	any cancer +/- normal normal +/- cancer cancer, not normal normal, not cancer [ ? ]

 

UniGene	Gene Symbol	Description	SNP IDs	SNP Summary	CGAP Gene Info
Validated SNPs
Hs.546467	EPSTI1	Epithelial stromal interaction 1 (breast)	CGAP-C-257911 CGAP-C-266066	SNPs	Gene Info
Hs.438830	DNAJC15	DnaJ (Hsp40) homolog, subfamily C, member 15	CGAP-C-58006 CGAP-C-262662 CGAP-C-262663 CGAP-C-262664	SNPs	Gene Info
Hs.507916	TSC22D1	TSC22 domain family, member 1	CGAP-C-240988	SNPs	Gene Info
Hs.368282	KIAA0564	KIAA0564	CGAP-C-61689	SNPs	Gene Info
Hs.512937	CPB2	Carboxypeptidase B2 (plasma)	CGAP-C-56769 CGAP-C-263253	SNPs	Gene Info
Hs.546323	SUCLA2	Succinate-CoA ligase, ADP-forming, beta subunit	CGAP-C-60638	SNPs	Gene Info
Hs.388220	CDADC1	Cytidine and dCMP deaminase domain containing 1	CGAP-C-245738	SNPs	Gene Info
Hs.87159	CAB39L	Calcium binding protein 39-like	CGAP-C-258391	SNPs	Gene Info
Predicted SNPs
Hs.546467	EPSTI1	Epithelial stromal interaction 1 (breast)	CGAP-C-2465030 CGAP-C-2465031	SNPs	Gene Info
Hs.438830	DNAJC15	DnaJ (Hsp40) homolog, subfamily C, member 15	CGAP-C-2442328	SNPs	Gene Info
Hs.507948	COG3	Component of oligomeric golgi complex 3	CGAP-C-2464320	SNPs	Gene Info
Hs.654582	GTF2F2	General transcription factor IIF, polypeptide 2, 30kDa	CGAP-C-2487250	SNPs	Gene Info
Hs.507866	C13orf15	Chromosome 13 open reading frame 15	CGAP-C-2398023	SNPs	Gene Info
Hs.507922	KIAA1704	KIAA1704	CGAP-C-2469869 CGAP-C-2469874	SNPs	Gene Info
Hs.381099	LCP1	Lymphocyte cytosolic protein 1 (L-plastin)	CGAP-C-2456530	SNPs	Gene Info
Hs.534383	COX17	COX17 cytochrome c oxidase assembly homolog (S. cerevisiae)	CGAP-C-2448486 CGAP-C-2448487	SNPs	Gene Info
Hs.105105	AKAP11	A kinase (PRKA) anchor protein 11	CGAP-C-2429911	SNPs	Gene Info
Hs.507916	TSC22D1	TSC22 domain family, member 1	CGAP-C-2445842 CGAP-C-2445851 CGAP-C-2445852 CGAP-C-2445853 CGAP-C-2445854	SNPs	Gene Info
Hs.432491	ESD	Esterase D/formylglutathione hydrolase	CGAP-C-2488862 CGAP-C-2488872 CGAP-C-2488878 CGAP-C-2488880 CGAP-C-2488881	SNPs	Gene Info
Hs.368282	KIAA0564	KIAA0564	CGAP-C-2482949	SNPs	Gene Info
Hs.601168	-	Transcribed locus	CGAP-C-2443067	SNPs	Gene Info
Hs.592490	FH	Fumarate hydratase	CGAP-C-2401590 CGAP-C-2401600 CGAP-C-2401601 CGAP-C-2401604 CGAP-C-2401606 CGAP-C-2401607 CGAP-C-2401608 CGAP-C-2401609	SNPs	Gene Info
Hs.123464	P2RY5	Purinergic receptor P2Y, G-protein coupled, 5	CGAP-C-2418750 CGAP-C-2418751 CGAP-C-2418754	SNPs	Gene Info
Hs.546323	SUCLA2	Succinate-CoA ligase, ADP-forming, beta subunit	CGAP-C-2453854 CGAP-C-2453855 CGAP-C-2453856 CGAP-C-2453857	SNPs	Gene Info
Hs.643683	ITM2B	Integral membrane protein 2B	CGAP-C-2418125 CGAP-C-2418130 CGAP-C-2418131 CGAP-C-2418137 CGAP-C-2418138 CGAP-C-2418140 CGAP-C-2418141 CGAP-C-2418142 CGAP-C-2418143	SNPs	Gene Info
Hs.87159	CAB39L	Calcium binding protein 39-like	CGAP-C-2480378	SNPs	Gene Info
Hs.181112	MED4	Mediator complex subunit 4	CGAP-C-2390300 CGAP-C-2390301 CGAP-C-2390302 CGAP-C-2390303	SNPs	Gene Info
Hs.512963	ALG11	UTP14, U3 small nucleolar ribonucleoprotein, homolog C (yeast)	CGAP-C-2443069	SNPs	Gene Info

Comments, questions and suggestions to: Bob Clifford ( clifforr@mail.nih.gov )