Gene description

novel protein similar to vertebrate leucine rich repeat and sterile alpha motif containing 1 (LRSAM1)

Locus tag

CH211-208H16.3

Gene type

protein coding

RefSeq status

PREDICTED

Organism

Danio rerio

Lineage

Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio

Also known as

LOC562066

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chromosome: 5See CH211-208H16.3 in MapViewer

GeneRIFs: Gene References Into FunctionWhat's a GeneRIF?

Preferred Names

hypothetical protein LOC562066

Names

hypothetical protein LOC562066

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

1. NM_001100004.1→NP_001093474.1 hypothetical protein LOC562066

   Source sequence(s)

   CR925757

   UniProtKB/TrEMBL

   A2CF42

   Conserved Domains (4) summary

   cd00162
   Location:673–712
   Blast Score:94

   RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in...

   COG0419
   Location:262–497
   Blast Score:96

   SbcC; ATPase involved in DNA repair [DNA replication, recombination, and repair]

   COG4886
   Location:57–189
   Blast Score:163

   COG4886; Leucine-rich repeat (LRR) protein [Function unknown]

   cl00131
   Location:563–616
   Blast Score:101

   SAM; Sterile alpha motif.; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is...

RefSeqs of Annotated Genomes: Build 3.1

The following sections contain reference sequences that belong to a specific genome build. Explain

This section includes genomic Reference Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate assemblies. Model RNAs and proteins are also reported here.

Reference assembly (based on Zv7)

Genomic

1. NC_007116.3 Reference assembly (based on Zv7)

   Range

   27678053..27694851

   Download

   GenBank  FASTA Sequence Viewer (beta)

2. NW_001879008.1

   Range

   3243716..3260514

   Download

   GenBank  FASTA Sequence Viewer (beta)

• UCSC UCSC
• UniGene Dr.92933