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Library:592 (dbEST ID)
GuayWoodford Beier mouse kidney day 0
Library Description
| Organism: | Mus musculus |
| Strain: | C57BL/6J |
| Developmental stage: | newborn (day 0) |
| Organ: | kidney |
| Tissue: | kidney |
| Vector: | pBluescript SK- |
| Vector type: | phagemid (ampicillin resistant) |
| Cloning site 1: | EcoRI |
| Cloning site 2: | XhoI |
| Lab host: | SOLR (kanamycin resistant) |
Cloned unidirectionally. Primer: Oligo dT. Average insert size: 1.0 kb; Uni-ZAP XR Vector; ~5' adaptor sequence: 5' GAATTCGGCACGAG 3' ~3' adaptor sequence: 5' CTCGAGTTTTTTTTTTTTTTTTTT 3' Library provided Lisa Guay-Woodford.
Source: Marra M/Mouse EST Project, Washington University School of MedicineP
Gene Content Analysis
1,660 ESTs from this library were grouped into 1,133 UniGene entries (putative genes) [UniGene build #177, 29-Nov-2008]. EST counts for each entry may be used to calculate an approximate expression level in transcripts per million (TPM).
| ESTs | TPM | UniGene Entry | ||
|---|---|---|---|---|
| 13 | 7831 |  |
Mm.196110 | Hemoglobin alpha, adult chain 1 (Hba-a1), mRNA. |
| 11 | 6627 | |
Mm.477472 | Transcribed locus, strongly similar to NP_904328.1 NADH dehydrogenase subunit 1 [Mus musculus]. |
| 11 | 6627 | |
Mm.425090 | Ribosomal protein S6, mRNA (cDNA clone MGC:6573 IMAGE:3481640). |
| 10 | 6024 |  |
Mm.279839 | Ribosomal protein S7, mRNA (cDNA clone MGC:5812 IMAGE:3484169). |
| 10 | 6024 | |
Mm.262021 | Ribosomal protein L6 (Rpl6), mRNA. |
| 8 | 4819 |  |
Mm.66 | Ribosomal protein S4, X-linked, mRNA (cDNA clone MGC:6575 IMAGE:3482299). |
| 8 | 4819 | |
Mm.5291 | Ribosomal protein S5 (Rps5), mRNA. |
| 8 | 4819 | |
Mm.371545 | Ribosomal protein, large, P0 (Rplp0), mRNA. |
| 8 | 4819 | |
Mm.297482 | Tumor protein, translationally-controlled 1 (Tpt1), mRNA. |
| 7 | 4217 | |
Mm.305750 | Ribosomal protein L27a (Rpl27a), mRNA. |
| 7 | 4217 | |
Mm.13944 | Ribosomal protein S9, mRNA (cDNA clone MGC:19433 IMAGE:3494314). |
| 6 | 3614 | |
Mm.347545 | Leucine rich repeat containing 45 (Lrrc45), mRNA. |
| 6 | 3614 | |
Mm.3158 | Ribosomal protein, large, P1 (Rplp1), mRNA. |
| 6 | 3614 | |
Mm.288567 | Hemoglobin, beta adult minor chain, mRNA (cDNA clone MGC:40691 IMAGE:3988455). |
| 5 | 3012 |  |
Mm.5305 | Guanine nucleotide binding protein (G protein), beta polypeptide 2 like 1 (Gnb2l1), mRNA. |
| 5 | 3012 | |
Mm.5286 | Ribosomal protein, large, P0, mRNA (cDNA clone MGC:18649 IMAGE:3982438). |
| 5 | 3012 | |
Mm.457947 | Transcribed locus, strongly similar to NP_904340.1 cytochrome b [Mus musculus]. |
| 5 | 3012 | |
Mm.391967 | Actin, beta (Actb), mRNA. |
| 5 | 3012 | |
Mm.250564 | Histone cluster 1, H2ad, mRNA (cDNA clone MGC:182309 IMAGE:9056203). |
| 5 | 3012 | |
Mm.236868 | Ribosomal protein S3, mRNA (cDNA clone MGC:6565 IMAGE:2811930). |
| 5 | 3012 | |
Mm.21938 | Ribosomal protein S20, mRNA (cDNA clone MGC:7167 IMAGE:3257215). |
| 4 | 2410 |  |
Mm.476742 | Eukaryotic translation elongation factor 1 alpha 1, mRNA (cDNA clone IMAGE:1179629). |
| 4 | 2410 | |
Mm.442130 | Ribosomal protein S12 (Rps12), mRNA. |
| 4 | 2410 | |
Mm.396243 | Ribosomal protein L3, mRNA (cDNA clone MGC:6334 IMAGE:3485069). |
| 4 | 2410 | |
Mm.379004 | Ribosomal protein L7 (Rpl7), mRNA. |
| 4 | 2410 | |
Mm.360075 | Eukaryotic translation elongation factor 1 alpha 1, mRNA (cDNA clone MGC:8209 IMAGE:3590965). |
| 4 | 2410 | |
Mm.335460 | Ubiquinol-cytochrome c reductase core protein 1, mRNA (cDNA clone MGC:41051 IMAGE:1400271). |
| 4 | 2410 | |
Mm.332667 | Anaphase-promoting complex subunit 5 (Anapc5), transcript variant 1, mRNA. |
| 4 | 2410 | |
Mm.326167 | Pyruvate kinase, muscle, mRNA (cDNA clone MGC:11908 IMAGE:3598842). |
| 4 | 2410 | |
Mm.324762 | Ribosomal protein S18 (Rps18), mRNA. |
| 4 | 2410 | |
Mm.29357 | Myo-inositol 1-phosphate synthase A1, mRNA (cDNA clone MGC:6809 IMAGE:2648362). |
| 4 | 2410 | |
Mm.291442 | Secreted acidic cysteine rich glycoprotein, mRNA (cDNA clone MGC:6232 IMAGE:3586402). |
| 4 | 2410 | |
Mm.250030 | Ribosomal protein L12, mRNA (cDNA clone MGC:7907 IMAGE:3583073). |
| 4 | 2410 | |
Mm.247762 | Transcribed locus, strongly similar to NP_001395.1 eukaryotic translation elongation factor 1 gamma [Homo sapiens]. |
| 4 | 2410 | |
Mm.182962 | Eukaryotic translation initiation factor 3, subunit F (Eif3f), mRNA. |
| 4 | 2410 | |
Mm.16775 | Ribosomal protein S24 (Rps24), transcript variant 1, mRNA. |
| 4 | 2410 | |
Mm.138471 | MRNA fragment for elongation factor TU (N-terminus). |
| 3 | 1807 | |
Mm.9745 | Lactate dehydrogenase B (Ldhb), mRNA. |
| 3 | 1807 | |
Mm.643 | Ribosomal protein S15, mRNA (cDNA clone MGC:18520 IMAGE:4234356). |
| 3 | 1807 | |
Mm.472851 | Transcribed locus, strongly similar to NP_904334.1 cytochrome c oxidase subunit III [Mus musculus]. |
| 3 | 1807 | |
Mm.471956 | Transcribed locus, strongly similar to NP_062225.1 translocase of inner mitochondrial membrane 23 homolog [Rattus norvegicus]. |
| 3 | 1807 | |
Mm.469717 | Transcribed locus, strongly similar to NP_571106.1 bactin1 [Danio rerio]. |
| 3 | 1807 | |
Mm.453598 | Transcribed locus. |
| 3 | 1807 | |
Mm.441926 | Fragile histidine triad gene, mRNA (cDNA clone MGC:13824 IMAGE:4036815). |
| 3 | 1807 | |
Mm.441099 | Transcribed locus. |
| 3 | 1807 | |
Mm.439877 | Gene rich cluster, C10 gene, mRNA (cDNA clone MGC:11436 IMAGE:3154555). |
| 3 | 1807 | |
Mm.43778 | Ribosomal protein S14 (Rps14), mRNA. |
| 3 | 1807 | |
Mm.432342 | CDNA clone IMAGE:5256411. |
| 3 | 1807 | |
Mm.431334 | Ribosomal protein L18A, mRNA (cDNA clone MGC:46957 IMAGE:5011713). |
| 3 | 1807 | |
Mm.425949 | Lymphocyte antigen 6 complex, locus A, mRNA (cDNA clone MGC:6188 IMAGE:3486025). |
| 3 | 1807 | |
Mm.423078 | Fructose bisphosphatase 1, mRNA (cDNA clone MGC:18799 IMAGE:4194764). |
| 3 | 1807 | |
Mm.413078 | Small nuclear ribonucleoprotein polypeptide A', mRNA (cDNA clone MGC:25531 IMAGE:3588138). |
| 3 | 1807 | |
Mm.395613 | Transcribed locus. |
| 3 | 1807 | |
Mm.391708 | PREDICTED: Mus musculus similar to 37kDa oncofetal antigen (LOC100040633), mRNA. |
| 3 | 1807 | |
Mm.383622 | Transcribed locus. |
| 3 | 1807 | |
Mm.380435 | Ribosomal protein, large P2, mRNA (cDNA clone MGC:6693 IMAGE:3583752). |
| 3 | 1807 | |
Mm.379100 | TRNA splicing endonuclease 34 homolog (S. cerevisiae) (Tsen34), mRNA. |
| 3 | 1807 | |
Mm.372039 | Collapsin/semaphorin III. |
| 3 | 1807 | |
Mm.371592 | Ubiquitin B, mRNA (cDNA clone MGC:29922 IMAGE:5123849). |
| 3 | 1807 | |
Mm.371563 | H3 histone, family 3B, mRNA (cDNA clone MGC:47401 IMAGE:4500770). |
| 3 | 1807 | |
Mm.371547 | ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c (subunit 9), isoform 1, mRNA (cDNA clone MGC:6436 IMAGE:3601516). |
| 3 | 1807 | |
Mm.3542 | Parathyroid hormone receptor 1, mRNA (cDNA clone MGC:18447 IMAGE:4241234). |
| 3 | 1807 | |
Mm.344071 | Coiled-coil domain containing 46 (Ccdc46), transcript variant 1, mRNA. |
| 3 | 1807 | |
Mm.337074 | Myosin, light polypeptide 6, alkali, smooth muscle and non-muscle, mRNA (cDNA clone MGC:25573 IMAGE:3990090). |
| 3 | 1807 | |
Mm.336955 | Ribosomal protein L10A, mRNA (cDNA clone MGC:7602 IMAGE:3494193). |
| 3 | 1807 | |
Mm.33344 | DNA segment, Chr 14, ERATO Doi 449, expressed, mRNA (cDNA clone MGC:25850 IMAGE:4194400). |
| 3 | 1807 | |
Mm.330160 | Heat shock 70kD protein 5 (glucose-regulated protein), mRNA (cDNA clone IMAGE:3603676). |
| 3 | 1807 | |
Mm.328360 | RIKEN cDNA 4631422O05 gene, mRNA (cDNA clone IMAGE:1430163). |
| 3 | 1807 | |
Mm.30049 | Complement component 1, q subcomponent binding protein, mRNA (cDNA clone MGC:46915 IMAGE:3154276). |
| 3 | 1807 | |
Mm.296922 | PREDICTED: Mus musculus similar to tumor protein, translationally-controlled 1 (LOC100043703), mRNA. |
| 3 | 1807 | |
Mm.296158 | STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae) (Stt3b), mRNA. |
| 3 | 1807 | |
Mm.29324 | Lactate dehydrogenase A, mRNA (cDNA clone IMAGE:3491850). |
| 3 | 1807 | |
Mm.291928 | Catenin (cadherin associated protein), beta 1, mRNA (cDNA clone IMAGE:3156732). |
| 3 | 1807 | |
Mm.289810 | Ribosomal protein L14, mRNA (cDNA clone IMAGE:3588708). |
| 3 | 1807 | |
Mm.289716 | Solute carrier family 35, member B2, mRNA (cDNA clone MGC:46984 IMAGE:5003855). |
| 3 | 1807 | |
Mm.289086 | Exosome component 1 (Exosc1), mRNA. |
| 3 | 1807 | |
Mm.288974 | Actin related protein 2/3 complex, subunit 5 (Arpc5), mRNA. |
| 3 | 1807 | |
Mm.280083 | Ribosomal protein L4, mRNA (cDNA clone MGC:6283 IMAGE:2648518). |
| 3 | 1807 | |
Mm.276337 | Ribosomal protein L17, mRNA (cDNA clone IMAGE:3594373). |
| 3 | 1807 | |
Mm.27358 | Within bgcn homolog (Drosophila) (Wibg), mRNA. |
| 3 | 1807 | |
Mm.273267 | Progestin and adipoQ receptor family member V, mRNA (cDNA clone MGC:118370 IMAGE:30919009). |
| 3 | 1807 | |
Mm.269248 | Zinc finger protein 330 (Zfp330), mRNA. |
| 3 | 1807 | |
Mm.261842 | RIKEN cDNA 4931406C07 gene (4931406C07Rik), mRNA. |
| 3 | 1807 | |
Mm.25610 | Ubiquitin associated protein 2-like (Ubap2l), transcript variant 2, mRNA. |
| 3 | 1807 | |
Mm.249555 | Collagen, type III, alpha 1, mRNA (cDNA clone IMAGE:2812464). |
| 3 | 1807 | |
Mm.24882 | Chloride channel Kb, mRNA (cDNA clone MGC:28502 IMAGE:4188062). |
| 3 | 1807 | |
Mm.246965 | Succinate dehydrogenase complex, subunit B, iron sulfur (Ip), mRNA (cDNA clone MGC:19177 IMAGE:4225025). |
| 3 | 1807 | |
Mm.245355 | Chitinase domain containing 1, mRNA (cDNA clone MGC:6792 IMAGE:2647540). |
| 3 | 1807 | |
Mm.24005 | Transmembrane protein AMIGO2 (Amigo2). |
| 3 | 1807 | |
Mm.239675 | Rho GTPase activating protein 12, mRNA (cDNA clone IMAGE:4038635). |
| 3 | 1807 | |
Mm.238973 | ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit, mRNA (cDNA clone IMAGE:4920887). |
| 3 | 1807 | |
Mm.234342 | Guanine nucleotide binding protein (G protein), gamma 12 (Gng12), mRNA. |
| 3 | 1807 | |
Mm.227924 | Lipin 2, mRNA (cDNA clone MGC:46819 IMAGE:5101211). |
| 3 | 1807 | |
Mm.218665 | RIKEN cDNA E430025E21 gene (E430025E21Rik), mRNA. |
| 3 | 1807 | |
Mm.21529 | Ribosomal protein L37a (Rpl37a), mRNA. |
| 3 | 1807 | |
Mm.2050 | Ribosomal protein L15 (Rpl15), mRNA. |
| 3 | 1807 | |
Mm.182654 | Synaptotagmin VII (Syt7), transcript variant 1, mRNA. |
| 3 | 1807 | |
Mm.1776 | Ferritin heavy chain 1, mRNA (cDNA clone MGC:19422 IMAGE:3488821). |
| 3 | 1807 | |
Mm.158264 | Prefoldin 5, mRNA (cDNA clone MGC:30379 IMAGE:3666296). |
| 3 | 1807 | |
Mm.157534 | PRP38 pre-mRNA processing factor 38 (yeast) domain containing A, mRNA (cDNA clone MGC:170932 IMAGE:8862327). |
Source: NCBI UniGene
EST Sequences
2,001 EST sequences from this library have been submitted to the public sequence database as of 29-Nov-2008.
Source: NCBI GenBank
Click the button to save sequences to a file (FASTA format)
Keywords
- kidney
- neonate
- C57 mouse
Source: NCBI Clone Registry