#$Id: bqrc, v1.2 1999/04/27 17:12:42 shavirin Exp $ # # The main configuration file for the BLAST service related # programs including WWW blast.cgi, Blast Queue and "quemon" # # ---------- This info is used by "queuemon" program ------------ [Queue] # --------- This info is used by WWW Blast program blast.cgi ----- # QUEUEMON_ENABLE -- controls submission to the queuemon, # by default TRUE # SPLITDB_ENABLE -- controls submission to the SPLITDB system # ( queueing to the DB) by default FALSE # ReadTimeout=60 HostName=iblast11 HostName2=iblast31 QueuePort=9092 SPLITDB_ENABLE=TRUE QUEUEMON_ENABLE=FALSE # ---------------------------------------------------------------- WebPort=80 IQDir=/blast/blastqueue/Q/IQ OQDir=/blast/blastqueue/Q/OQ SMDir=/blast/blastqueue/Q/SM TmpDir=/blast/blastqueue/Tmp ErrLogFileName=Log/errors.log RequestsLogDirName=Log/Requests SNOOP_BLASTOBJECT=FALSE # # different settings, related to the SPLITDB project # # USE_GETREQ_SERVICE -- {TRUE}FALSE} -- run getreq.cgi remotly using load balancer # GETREQ_SERVICE_NAME -- {STRING} -- getreq.cgi service name as introduced by load balancer # # FORMAT_DUAL_MODE=TRUE -- {TRUE|FALSE} -- format allre quests using DB first. # # BLASTQ4 - MSSQL21 primary # BLASTQ3 - MSSQL22 primary # ATTENTION! # DBLB_SERVER settings has higher priority then DB_SERVER [SPLITDB] DBLB_SERVER=SD_DBLDD:10 #DBLB_SERVER=TESTBLAST_DBLDD:10 DB_SERVER=BLASTQ4 ##DB_SERVER=MSSQL21,MSSQL22 #DB_ALIASES=BLASTQ3/MSSQL21;BLASTQ3/MSSQL30.nac.ncbi.nlm.nih.gov DB_DATABASE=BlastQNew DB_DRIVER=ftds DB_USER=support DB_ENCPASS=b6bc0098503296228ea5911f36c2fff9 #///////SUBMIT/PUT part////////////////////// SPLITD_TAG=NEWDB #SPLITD_TAG=TESTBLAST DEFAULT_PARAMETER_TYPE_SET=2 LL_DB_SEPARATION=TRUE #-- cdd checking parameters CDD_CHECK_TIMEOUT=1 CDD_CHECK_COUNT=9 USE_GETREQ_SERVICE=TRUE REMOTE_SERVICE_RW_TIMEOUT=200 #-- dblb settings . start DBLB_DETECT_LL=TRUE DBLB_PROC_0=NEWDB_GetStdQSize:100 Normal searches ( default) DBLB_PROC_1=NEWDB_GetNbrQSize:100 Neighboring ( inc. nabrcdd ) DBLB_PROC_2=NEWDB_GetRpsQSize:100 RPS searches DBLB_PROC_3=NEWDB_GetTrcQSize:100 Trace searches DBLB_PROC_4=NEWDB_GetXltQSize:100 tblastn and tblastx searches DBLB_PROC_5=NEWDB_GetNbrCddXpressQSize:100 express cdd neigboring DBLB_PROC_6=NEWDB_GetIndexedQSize:100 search against indexed DB DBLB_PROC_10=NEWDB_GetLLQSize:100 any long life search DBLB_PROC_20=NEWDB_GetTMSRestrictedQSize:1000 TMSmart restricted #-- dblb settings . end #-- accept only in-house searches to SPLITD system, default TRUE # ACCEPT_INHOUSE_ONLY=FALSE #-- accept only LLQ requests to SPLITD system, default TRUE ACCEPT_LLQ_ONLY=FALSE #-- submit search to the SPLITD system if it satisfy requrements ( default FALSE ) # only relevant if [Queue]QUEUEMON_ENABLE=TRUE SPLITD_SUBMIT_PREFERENCE=TRUE #-- rules to generate RID, default 'DEFAULT' -- QBLAST stile RID's #RID_NAMING_SCHEMA=DBALIAS RID_NAMING_SCHEMA=BASE32 RID_ALIAS_RULE0=0:TESTBLAST;1-31:BLASTQ%d #-- enable partial outside jobs submission to the SPLITD system ( default FALSE ) PARTIAL_WEB_PROCESSING=TRUE #-- take specified percentage of outside jobs to SPLITD ( default 1.0 ) PARTIAL_WEB_PERCENTAGE=100.0 #-- set the New Entrez Query status to trigger ezcached USE_ENTREZ_CACHE=TRUE #-- list of clients considered NOT a long life NOT_LL_CLIENT_LIST = web,Generic client,Netblast client,nabrcl,NabrCdd,NabrCdd_Express,SOAP #-- DENAIL OF SERVICE DOS_LIMIT_IQ_SIZE=TRUE DOS_LIMIT_IQ_IN_PEAK_HOURS_ONLY=FALSE DOS_REJECT_OVER_LIMIT_QUERY=TRUE DOS_IQ_LIMIT=50,100 DOS_PEAK_WINDOW=6,20 DEBUG_DOS=TRUE # -- DEBUG FLAGS ##DEBUG_PUT_LOGIC=TRUE #DEBUG_PARTIAL_WEB_LOGIC=TRUE #DEBUG_TOE=TRUE ##DEBUG_DBLB=TRUE DEBUG_CUBBY=TRUE # -- USABILITY CHEKING USABILITY_CHECK_PUT=TRUE USABILITY_CHECK_GET=TRUE USABILITY_CHECK_WEB=TRUE USABILITY_CHECK_INFO=TRUE USABILITY_CHECK_DELETE=TRUE USABILITY_CHECK_BIOSEQ_HASH=TRUE # --- MyBLAST tests MYBLAST_TIMEOUT=7 MYBLAST_AUTH=TRUE MYBLAST_APPLICATION=AREA51 # MYBLAST_SERVER=SD_DBLDD MYBLAST_SAVE_BOBJ=FALSE MYBLAST_ALIAS=CUBBY # ... format request MYBLAST_FORMAT_LOG=FALSE MYBLAST_MAKE_SEARCH=FALSE ##MYBLAST_SEARCH_STRING=VisibleName LIKE '%' PROFILE_CUBBY=TRUE PROFILE_DBPUT=TRUE # -- enable NyNCBI/MyBLAST user id printing DEBUG_CUBBY=TRUE # -- specify available indexed BLAST DB BLASTDB_INDEXED=dbindex/9606/allcontig_and_rna,dbindex/10090/allcontig_and_rna # -- enable History Trace Backend logging ( HTB) HTB_LOG=TRUE HTB_LOG_DEBUG=TRUE # -- enable cookie data signing SIGNED_MYBLAST_COOKIE=TRUE #///////FORMAT/GET part////////////////////// USE_GETREQ_SERVICE=TRUE GETREQ_SERVICE_NAME=SPLITD_GETREQ RESTRICTED_GETREQ_SERVICE_NAME=SPLITD_TMS_GETREQ #GETREQ_SERVICE_NAME=TESTBLAST_GETREQ #GETREQ_SERVICE_NAME=MOON #GETREQ_SERVICE_NAME=IRINA_GETREQ_PROD FAST_STATUS_CHECK=TRUE SHOW_EXTENDED_SEARCH_INFO=TRUE # -- minimal number of unfinished jobs to start notify user if above # default 2 SHOW_EXTENDED_SEARCH_INFO_MIN_UNF_JOBS=20 #-- enable to format LLQ requests using DB first # LLQ_FORMAT_DUAL_MODE=TRUE #-- enable to format ALL IN-HOUSE request using DB first INHOUSE_FORMAT_DUAL_MODE=TRUE #.. format ALL request using DB first # FORMAT_DUAL_MODE=TRUE #.. record format requests statistics LOG_FORMAT_REQUEST=TRUE # # EXPERIMENTAL. IN RECORD MODE NO LIMITATION GETREQ_FMTQ=RECORD DEBUG_GETREQ_FMTQ=FALSE # EXPERIMENTAL. UPDATE USER CUBBY INFORMATION FROM MyNCBI REG ##UPDATE_CUBBY_INFO=TRUE #BL2DBLB_SERVER=BL2SEQ_DBLDD [IQ_COUNT_REPORT] WEB=web BLAST3CL=blast3 WEB_ADRESSES_MAX=5 BLAST3CL_ADDRESSES_MAX=5 CLIENT_LIST_ORDER=refseq,refseqexpress,dirsub,dirsubexpress,tmsmart,tmsmart_express,mgc_whoops,nabrcl,nabrcdd [Get] LogFileName=/tmp/get.log GetURL=www.ncbi.nlm.nih.gov/blast/blast.cgi GetcgiURL=www.ncbi.nlm.nih.gov/blast/Blast.cgi CPULimit=1000 DATALimit=1512000000 BYPASS_BQ_SEMAPHORE=TRUE [Ports] Put=8001 Web=8002 Adm=8003 SemaKey=74718192 DoneNotify=9094 [Mail] SendMailCommand=/usr/lib/sendmail -t [Time] blastp=1 blastn=1 blastx=6 tblastn=10 tblastx=36 gapped=10 ungapped=8 filtered=1 unfiltered=3 WeightsFile=/blast/blastqueue/weights.timer StatMatFile=statmat.timer DBInfoFile=dbinfo.timer #month=1 #nr=100 #swissprot=70 nr = 155342427 month = 2794970 swissprot = 34709118 dbest = 1087582576 dbsts = 28052972 est_mouse = 228893471 est_human = 618494095 est_others = 240195010 pdb = 213007 pat = 39704683 vector = 2301261 kabat = 6149895 mito = 1815696 alu = 225461 epd = 872088 yeast = 14229504 ecoli = 4799924 gss = 320587697 htgs = 237188633