R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|6729038|gb|AAF27034.1|AC009177_24 (AC009177) unknown protein [Arabidopsis
thaliana]
Length = 280
Frame -1 hits (HSPs): ____________________________
Frame -3 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | | 280
0 50 100 150 200 250
Minus Strand HSPs:
Score = 660 (232.3 bits), Expect = 3.4e-72, Sum P(2) = 3.4e-72
Identities = 127/152 (83%), Positives = 139/152 (91%), Frame = -1
Query: 776 ICXTLIFVAASIGTFVTNIAHKLKSKEWDYDINLVTWSAGLFYGYVTIVLLCLYVILKYF 597
IC TLIFVAASIGTFVT IAHK K +EW+YDINLVTWSAG+FYGYVTIV L LYV+LKYF
Sbjct: 129 ICTTLIFVAASIGTFVTYIAHKWKKQEWNYDINLVTWSAGVFYGYVTIVPLALYVVLKYF 188
Query: 596 XAPAGLVQLFCLYGYSLFVFIPALCMSVVPLDIFRWVVAGVAGFMSATFVALNLRAHIKS 417
AP+GLVQLFCLYGYSLFVFIPALC+SVVP++IFRWV+AGVAGFMSATFVALNL+AHI S
Sbjct: 189 SAPSGLVQLFCLYGYSLFVFIPALCLSVVPVEIFRWVIAGVAGFMSATFVALNLKAHINS 248
Query: 416 AGERWFLIVAGIFLLQLALAVVLKLYLFTVSV 321
AGER LI+A IFLLQLALAVVLKLY+F V V
Sbjct: 249 AGERSILIIASIFLLQLALAVVLKLYIFNVKV 280
Score = 97 (34.1 bits), Expect = 3.4e-72, Sum P(2) = 3.4e-72
Identities = 17/23 (73%), Positives = 18/23 (78%), Frame = -3
Query: 849 SLFPFRGSFNEKXGTNPDLYGPF 781
SLFPFRG+F EK PDLYGPF
Sbjct: 105 SLFPFRGTFTEKTADKPDLYGPF 127
>gi|5441322|emb|CAB46721.1| (AL031427) dJ167A19.1 (novel protein) [Homo
sapiens]
Length = 306
Frame -1 hits (HSPs): __________________________
Frame -3 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | | | 306
0 50 100 150 200 250 300
Minus Strand HSPs:
Score = 164 (57.7 bits), Expect = 7.0e-11, Sum P(2) = 7.0e-11
Identities = 43/156 (27%), Positives = 75/156 (48%), Frame = -1
Query: 776 ICXTLIFVAASIGTFVTNIAHKLKSKEWDY--DINLVTWSAGLFYGYVTIVLLCLYVILK 603
IC TL+F A G + H L K + Y + V+ +A + Y Y +V L L+ L
Sbjct: 126 ICATLVFAIAISGNLSNFLIH-LGEKTYHYVPEFRKVSIAATIIYAYAWLVPLALWGFLM 184
Query: 602 YFXAPA------GLVQLFCLYGYSLFVFIPALCMSVVPLDIFRWVVAGVAGFMSATFVAL 441
+ + +++ C+YGYSLF++IP + ++P RW++ +A +S + +A+
Sbjct: 185 WRNSKVMNIVSYSFLEIVCVYGYSLFIYIPTAILWIIPQKAVRWILVMIALGISGSLLAM 244
Query: 440 NLRAHIKSAGERWFLI-VAGIFLLQLALAVVLKLYLF 333
++ R L + I LL + L+V Y F
Sbjct: 245 TFWPAVREDNRRVALATIVTIVLLHMLLSVGCLAYFF 281
Score = 52 (18.3 bits), Expect = 7.0e-11, Sum P(2) = 7.0e-11
Identities = 14/28 (50%), Positives = 16/28 (57%), Frame = -3
Query: 858 IXXSLFPFRG-SFNEKX-GTNPDLYGPF 781
I SL P G +F +NPDLYGPF
Sbjct: 97 IKGSLLPIPGKNFVRLYIRSNPDLYGPF 124
>gi|7509497|pir||T33905 hypothetical protein Y25C1A.7b - Caenorhabditis elegans
>gi|4226129|gb|AAD12839.1| (AF125459) Y25C1A.7b gene product
[Caenorhabditis elegans]
Length = 287
Frame -1 hits (HSPs): ___________________________
Frame -3 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | | 287
0 50 100 150 200 250
Minus Strand HSPs:
Score = 155 (54.6 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 44/152 (28%), Positives = 70/152 (46%), Frame = -1
Query: 776 ICXTLIFVAASIGTFVTNIAHKLKSKEWDYDINLVTWSAGLFYGYVTIVLLCLYVIL--K 603
+ TL+F G I + + D +VT ++ L + YV IV L LY +L +
Sbjct: 122 VSVTLVFAIGIFGNLAQFIENDGAKGTYGSDFRMVTSASTLIFLYVVIVPLLLYGLLWNR 181
Query: 602 YFXAPAGLVQLFCLYGYSLFVFIPALCMSVVPLDIFRWVVAGVAGFMSATFVALNLRAHI 423
V L CLYGYSL +FIP + +V + FRW + + +S T +A + +
Sbjct: 182 RSELLHPYVDLVCLYGYSLAIFIPVSVLWIVDIGWFRWALIFASVGLSGTVLARAIWPAV 241
Query: 422 KSAGERW--FLIVAGIFLLQLALAVVLKLYLF 333
++ + F V + +L LA K+Y F
Sbjct: 242 QNDNNKMIAFGTVISVVVLHFLLAFTFKVYFF 273
Score = 43 (15.1 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 10/23 (43%), Positives = 13/23 (56%), Frame = -3
Query: 801 PDLYGPFXDLXYLDICSGIYWHL 733
PDL+GPF L GI+ +L
Sbjct: 114 PDLWGPFWVSVTLVFAIGIFGNL 136
>gi|6455909|emb|CAB61455.1| (AL133156) hypothetical protein
[Schizosaccharomyces pombe]
Length = 249
Frame -1 hits (HSPs): __________________________
Frame -3 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | 249
0 50 100 150 200
Minus Strand HSPs:
Score = 138 (48.6 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 38/128 (29%), Positives = 65/128 (50%), Frame = -1
Query: 689 YDINLVTWSAGLFYGYVTIVLLCLYVILKYFXAPAGLVQLFCLYGYSLFVFIP-ALC--- 522
Y I + +A + YGY TI+ + L+ IL + L+ CLYGY+ V++P +L
Sbjct: 122 YSIKKLISAASIIYGYTTIIAVLLWGILVWNKCNPKLLDCLCLYGYANIVWLPVSLATPP 181
Query: 521 ---MSVVPLDIFRWVVAGVAGFMSATFVALNLRAHIKSAGERWF-LIVAGIFLLQLALAV 354
+S + I ++V+ G+ +S F+ NL + AG L++ GI + LA+
Sbjct: 182 FGLLSTLASHIVKYVLTGIGLLISIVFLTRNLYPICQQAGSNLCKLLLFGIIVFHCLLAL 241
Query: 353 VLKLYLFT 330
L+L F+
Sbjct: 242 SLQLIFFS 249
Score = 44 (15.5 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 8/16 (50%), Positives = 10/16 (62%), Frame = -3
Query: 828 SFNEKXGTNPDLYGPF 781
+F + PDLYGPF
Sbjct: 76 NFFDVVDDRPDLYGPF 91
>gi|7021136|dbj|BAA91389.1| (AK000823) unnamed protein product [Homo sapiens]
Length = 123
Frame -1 hits (HSPs): __________________________________
__________________________________________________
Database sequence: | | | | 123
0 50 100
Minus Strand HSPs:
Score = 119 (41.9 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 24/83 (28%), Positives = 45/83 (54%), Frame = -1
Query: 578 VQLFCLYGYSLFVFIPALCMSVVPLDIFRWVVAGVAGFMSATFVALNLRAHIKSAGERWF 399
+++ C+YGYSLF++IP + ++P RW++ +A +S + +A+ ++ R
Sbjct: 16 LEIVCVYGYSLFIYIPTAILWIIPQKAVRWILVMIALGISGSLLAMTFWPAVREDNRRVA 75
Query: 398 LI-VAGIFLLQLALAVVLKLYLF 333
L + I LL + L+V Y F
Sbjct: 76 LATIVTIVLLHMLLSVGCLAYFF 98
>gi|7509496|pir||T33904 hypothetical protein Y25C1A.7a - Caenorhabditis elegans
>gi|4226128|gb|AAD12838.1| (AF125459) Y25C1A.7a gene product
[Caenorhabditis elegans]
Length = 362
Frame -1 hits (HSPs): _________________________
__________________________________________________
Database sequence: | | | | 362
0 150 300
Minus Strand HSPs:
Score = 139 (48.9 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 53/178 (29%), Positives = 83/178 (46%), Frame = -1
Query: 830 DLSMKKXVP-TXIC---MVHSGICX--TLIFVAASIGTFVTNIAHKLKS---KEWDYDIN 678
D SMKK +C S C + F S G F+TN K S ++ ++ +
Sbjct: 171 DFSMKKFQKINNLCESFKKKSDFCHQNSPSFCNLSHG-FLTNGNLKTGSFSEQKMNFYTS 229
Query: 677 LVTWSAGLFYGYVTIVLLCLYVIL--KYFXAPAGLVQLFCLYGYSLFVFIPALCMSVVPL 504
+T ++ L + YV IV L LY +L + V L CLYGYSL +FIP + +V +
Sbjct: 230 FITSASTLIFLYVVIVPLLLYGLLWNRRSELLHPYVDLVCLYGYSLAIFIPVSVLWIVDI 289
Query: 503 DIFRWVVAGVAGFMSATFVALNLRAHIKSAGERW--FLIVAGIFLLQLALAVVLKLYLF 333
FRW + + +S T +A + +++ + F V + +L LA K+Y F
Sbjct: 290 GWFRWALIFASVGLSGTVLARAIWPAVQNDNNKMIAFGTVISVVVLHFLLAFTFKVYFF 348
>gi|7292820|gb|AAF48214.1| (AE003490) CG4645 gene product [Drosophila
melanogaster]
Length = 329
Frame -1 hits (HSPs): _____________________
Frame -3 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | 329
0 150 300
Minus Strand HSPs:
Score = 97 (34.1 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 38/148 (25%), Positives = 64/148 (43%), Frame = -1
Query: 776 ICXTLIFVAASIGTFVTNIAHKLKSKEWDYDINLVTWSAGLFYGYVTIVLLCLYVILKYF 597
I TLIF A G + + + +W Y+ +LV+++A + Y I+
Sbjct: 158 ITVTLIFSIAISGNIASYLQQATDAYKWHYNFHLVSYAATSIFLYANIL----------- 206
Query: 596 XAPAGLVQLFCLYGYSLFVFIPALCMSVVPLDIFRWVVAGVAGFMSATFVALNLRAHIKS 417
PA L+ L+ YSL A + + + +W++ A +S T + L +++
Sbjct: 207 --PA---VLWALFKYSLKPVDSADAVETDSISLLQWLLVITAALLSGTVLIAVLTPALRN 261
Query: 416 AGERWFLIVAGIFLLQLALAVVLKLYLF 333
+ FLIV GI + LA LY F
Sbjct: 262 SQFSLFLIV-GILSAHVVLAAGFLLYFF 288
Score = 63 (22.2 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 15/29 (51%), Positives = 16/29 (55%), Frame = -3
Query: 858 IXXSLFPFRGSFNE---KXGTNPDLYGPF 781
I S+ P R S N G NPDLYGPF
Sbjct: 128 IANSMIPKRASGNYLRMNIGENPDLYGPF 156
>gi|535724|gb|AAA99953.1| (L28129) glucose transporter type 2 [Rattus
norvegicus]
Length = 41
Frame -2 hits (HSPs): _________________________________
__________________________________________________
Database sequence: | | | | 41
0 20 40
Minus Strand HSPs:
Score = 84 (29.6 bits), Expect = 0.043, P = 0.043
Identities = 13/27 (48%), Positives = 15/27 (55%), Frame = -2
Query: 526 CVCPLCHWIYLDGWLQVWQGSCQQHLW 446
C PL W LDG Q+W G+C H W
Sbjct: 7 CKQPLVDWSPLDGVFQIWTGTCSHHCW 33
>gi|4589255|gb|AAD26420.1|AF132221_1 (AF132221) merozoite surface protein 2
[Plasmodium falciparum]
Length = 179
Frame 2 hits (HSPs): ________
Frame 1 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | 179
0 50 100 150
Plus Strand HSPs:
Score = 82 (28.9 bits), Expect = 0.40, Sum P(2) = 0.33
Identities = 19/50 (38%), Positives = 25/50 (50%), Frame = +1
Query: 442 SATNVADMNPATPATTHLNISSGTTDIHRAGIKTNREYPYRQNSCTRPAG 591
+AT PATPATT ++ TT+ A T+ E P N+ T P G
Sbjct: 49 TATPATPATPATPATTTTTTTTTTTNDAEASTSTSSENPNHNNAKTNPKG 98
Score = 44 (15.5 bits), Expect = 0.40, Sum P(2) = 0.33
Identities = 11/26 (42%), Positives = 16/26 (61%), Frame = +2
Query: 617 TGKEEQW*HSHKTNQQTKSPDLCHNP 694
T + EQ +S T +QT+SP+L P
Sbjct: 140 TAQPEQAENSAPTAEQTESPELQSAP 165
>gi|6649608|gb|AAF21478.1|U91655_1 (U91655) merozoite surface antigen 2
[Plasmodium falciparum]
Length = 191
Frame 2 hits (HSPs): ________
Frame 1 hits (HSPs): ___________________
__________________________________________________
Database sequence: | | | | | 191
0 50 100 150
Plus Strand HSPs:
Score = 83 (29.2 bits), Expect = 0.41, Sum P(2) = 0.34
Identities = 24/69 (34%), Positives = 32/69 (46%), Frame = +1
Query: 388 ATIKNHLSP-ADLICARRFSATNVADMNPATPATTHLNISSGTTDIHRAGIKTNREYPYR 564
A+ N +P AD + AT PATPATT ++ TT+ A T+ E P
Sbjct: 43 ASAGNGANPGADAERSPSTPATPATPATPATPATTTTTTTTTTTNDAEASTSTSSENPNH 102
Query: 565 QNSCTRPAG 591
N+ T P G
Sbjct: 103 NNAKTNPKG 111
Score = 44 (15.5 bits), Expect = 0.41, Sum P(2) = 0.34
Identities = 11/26 (42%), Positives = 16/26 (61%), Frame = +2
Query: 617 TGKEEQW*HSHKTNQQTKSPDLCHNP 694
T + EQ +S T +QT+SP+L P
Sbjct: 153 TAQPEQAENSAPTAEQTESPELQSAP 178
>gi|6649610|gb|AAF21479.1|U91656_1 (U91656) merozoite surface antigen 2
[Plasmodium falciparum]
Length = 203
Frame 2 hits (HSPs): _______
Frame 1 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | || 203
0 50 100 150 200
Plus Strand HSPs:
Score = 81 (28.5 bits), Expect = 0.94, Sum P(2) = 0.61
Identities = 19/49 (38%), Positives = 24/49 (48%), Frame = +1
Query: 445 ATNVADMNPATPATTHLNISSGTTDIHRAGIKTNREYPYRQNSCTRPAG 591
AT PATPATT ++ TT+ A T+ E P N+ T P G
Sbjct: 75 ATPATPATPATPATTTTTTTTTTTNDAEASTSTSSENPNHNNAKTNPKG 123
Score = 44 (15.5 bits), Expect = 0.94, Sum P(2) = 0.61
Identities = 11/26 (42%), Positives = 16/26 (61%), Frame = +2
Query: 617 TGKEEQW*HSHKTNQQTKSPDLCHNP 694
T + EQ +S T +QT+SP+L P
Sbjct: 165 TAQPEQAENSAPTAEQTESPELQSAP 190
>gi|565674|gb|AAA52362.1| (U16695) merozoite surface antigen 2 [Plasmodium
falciparum]
Length = 129
Frame 2 hits (HSPs): _________
Frame 1 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | 129
0 50 100
Plus Strand HSPs:
Score = 70 (24.6 bits), Expect = 2.6, Sum P(2) = 0.92
Identities = 18/48 (37%), Positives = 26/48 (54%), Frame = +1
Query: 457 ADMNPATPATTHLNISSGTTDIHRAGIKTNREYPYRQNSCTRPAGAXK 600
A+ +P+TPATT ++ TT+ A T+ E P N+ T P G K
Sbjct: 23 AERSPSTPATT---TTTTTTNDAEASTSTSSENPNHNNAETNPKGNGK 67
Score = 43 (15.1 bits), Expect = 2.6, Sum P(2) = 0.92
Identities = 10/22 (45%), Positives = 15/22 (68%), Frame = +2
Query: 617 TGKEEQW*HSHKTNQQTKSPDL 682
T + EQ +S T +QT+SP+L
Sbjct: 106 TAQPEQAENSAPTAEQTESPEL 127
>gi|4589253|gb|AAD26419.1|AF132220_1 (AF132220) merozoite surface protein 2
[Plasmodium falciparum]
Length = 187
Frame 2 hits (HSPs): _______
Frame 1 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | 187
0 50 100 150
Plus Strand HSPs:
Score = 74 (26.0 bits), Expect = 4.5, Sum P(2) = 0.99
Identities = 18/49 (36%), Positives = 23/49 (46%), Frame = +1
Query: 445 ATNVADMNPATPATTHLNISSGTTDIHRAGIKTNREYPYRQNSCTRPAG 591
AT PATPAT ++ TT+ A T+ E P N+ T P G
Sbjct: 58 ATPATPATPATPATPATTTTTTTTNDAEASTSTSSENPNHNNAETNPKG 106
Score = 44 (15.5 bits), Expect = 4.5, Sum P(2) = 0.99
Identities = 11/26 (42%), Positives = 16/26 (61%), Frame = +2
Query: 617 TGKEEQW*HSHKTNQQTKSPDLCHNP 694
T + EQ +S T +QT+SP+L P
Sbjct: 148 TAQPEQAENSAPTAEQTESPELQSAP 173
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.98
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.351 0.155 0.562
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.343 0.149 0.507
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.343 0.146 0.496
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.342 0.150 0.496
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.369 0.167 0.697
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.343 0.152 0.569
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 323 305 10. 79 3 12 22 0.11 36
33 0.10 40
+2 0 323 305 10. 79 3 12 22 0.11 36
33 0.10 40
+1 0 323 306 10. 79 3 12 22 0.11 36
33 0.10 40
-1 0 323 306 10. 79 3 12 22 0.11 36
33 0.10 40
-2 0 323 305 10. 79 3 12 22 0.11 36
33 0.10 40
-3 0 323 304 10. 79 3 12 22 0.11 36
33 0.10 40
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 8:50 PM CDT May 27, 2000
Format: BLAST
# of letters in database: 158,518,215
# of sequences in database: 505,245
# of database sequences satisfying E: 13
No. of states in DFA: 597 (59 KB)
Total size of DFA: 326 KB (384 KB)
Time to generate neighborhood: 0.04u 0.00s 0.04t Elapsed: 00:00:00
No. of threads or processors used: 4
Search cpu time: 451.80u 1.26s 453.06t Elapsed: 00:04:05
Total cpu time: 451.88u 1.30s 453.18t Elapsed: 00:04:05
Start: Mon Oct 16 18:52:09 2000 End: Mon Oct 16 18:56:14 2000
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000