BLASTX+BEAUTY Search Results

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BLASTX+BEAUTY Search Results

WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.
BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.
BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract
Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract


RepeatMasker repeats found in sequence:
No Repeats Found.

Reference:  Gish, Warren (1994-1997).  unpublished.
Gish, Warren and David J. States (1993).  Identification of protein coding
regions by database similarity search.  Nat. Genet. 3:266-72.

Notice:  statistical significance is estimated under the assumption that the
equivalent of one entire reading frame in the query sequence codes for protein
and that significant alignments will involve only coding reading frames.

Query=  SSH4A09.SEQ(1>260)
        (237 letters)
  Translating both strands of query sequence in all 6 reading frames

Database:  nr
           505,245 sequences; 158,518,215 total letters.


     Observed Numbers of Database Sequences Satisfying
    Various EXPECTation Thresholds (E parameter values)

        Histogram units:      = 6 Sequences     : less than 6 sequences

 EXPECTation Threshold
 (E parameter)
    |
    V   Observed Counts-->
  10000 1918 371 |=============================================================
   6310 1547 189 |===============================
   3980 1358 187 |===============================
   2510 1171 238 |=======================================
   1580  933 129 |=====================
   1000  804 111 |==================
    631  693  87 |==============
    398  606 129 |=====================
    251  477  22 |===
    158  455  32 |=====
    100  423  21 |===
   63.1  402  12 |==
   39.8  390  22 |===
   25.1  368   9 |=
   15.8  359   5 |:
 >>>>>>>>>>>>>>>>>>>>>  Expect = 10.0, Observed = 354  <<<<<<<<<<<<<<<<<
   10.0  354   8 |=
   6.31  346   2 |:
   3.98  344   5 |:
   2.51  339   1 |:
   1.58  338   2 |:
   1.00  336   6 |=
   0.63  330   2 |:
   0.40  328   1 |:
   0.25  327   9 |=
   0.16  318  14 |==
   0.10  304  12 |==
  0.063  292  16 |==
  0.040  276   7 |=
  0.025  269   5 |:
  0.016  264   4 |:
  0.010  260   2 |:
 0.0063  258  11 |=
 0.0040  247   8 |=
 0.0025  239   2 |:


                                                                     Smallest
                                                                       Sum
                                                     Reading  High  Probability
Sequences producing High-scoring Segment Pairs:        Frame Score  P(N)      N
gi|3914600|sp|O64416|RBS_MARPARIBULOSE BISPHOSPHATE C... +3   258  2.8e-21   1
gi|132153|sp|P24007|RBS_PYRPYRIBULOSE BISPHOSPHATE CA... +3   241  1.7e-19   1
gi|403160|gb|AAA33866.1|(L24497) ribulose 1,5-bisphos... +3   240  2.2e-19   1
gi|3914601|sp|O65194|RBS_MEDSARIBULOSE BISPHOSPHATE C... +3   239  2.8e-19   1
gi|464595|sp|Q02980|RBS_MALSPRIBULOSE BISPHOSPHATE CA... +3   238  3.6e-19   1
gi|3928152|emb|CAA10290.1|(AJ131050) ribulose 1,5-bis... +3   238  3.6e-19   1
gi|132120|sp|P26575|RBSA_SOLTURIBULOSE BISPHOSPHATE C... +3   234  9.6e-19   1
gi|132123|sp|P26576|RBSB_SOLTURIBULOSE BISPHOSPHATE C... +3   234  9.6e-19   1
gi|132125|sp|P26577|RBSC_SOLTURIBULOSE BISPHOSPHATE C... +3   234  9.6e-19   1
gi|3914604|sp|Q40250|RBS_LACSARIBULOSE BISPHOSPHATE C... +3   234  9.6e-19   1
gi|6635351|gb|AAF19793.1|AF162210_1(AF162210) ribulos... +3   233  1.2e-18   1
gi|132161|sp|P17673|RBS_TRIRPRIBULOSE BISPHOSPHATE CA... +3   232  1.6e-18   1
gi|132118|sp|P26573|RBS8_NICPLRIBULOSE BISPHOSPHATE C... +3   230  2.6e-18   1
gi|417593|sp|P32764|RBS3_SOLTURIBULOSE BISPHOSPHATE C... +3   230  2.6e-18   1
gi|132080|sp|P22433|RBS1_NICSYRIBULOSE BISPHOSPHATE C... +3   230  2.6e-18   1
gi|132095|sp|P07179|RBS2_LYCESRIBULOSE BISPHOSPHATE C... +3   230  2.6e-18   1
gi|132085|sp|P26574|RBS1_SOLTURIBULOSE BISPHOSPHATE C... +3   229  3.3e-18   1
gi|132079|sp|P08706|RBS1_LYCESRIBULOSE BISPHOSPHATE C... +3   229  3.3e-18   1
gi|170504|gb|AAA34192.1|(M15236) ribulose-1,5-bisphos... +3   229  3.3e-18   1
gi|3914586|sp|O65349|RBS_CAPANRIBULOSE BISPHOSPHATE C... +3   229  3.3e-18   1
gi|132104|sp|P07180|RBS3_LYCESRIBULOSE BISPHOSPHATE C... +3   228  4.2e-18   1
gi|132112|sp|P05349|RBS4_LYCESRIBULOSE BISPHOSPHATE C... +3   228  4.2e-18   1
gi|1673456|emb|CAA70416.1|(Y09214) rubisco small subu... +3   228  4.2e-18   1
gi|132071|sp|P10647|RBS0_SOLTURIBULOSE BISPHOSPHATE C... +3   227  5.3e-18   1
gi|1055368|gb|AAA81328.1|(U39567) ribulose-1,5-bispho... +3   227  5.3e-18   1
gi|1079736|gb|AAA82069.1|(U39856) ribulose 1,5-bispho... +3   227  5.3e-18   1
gi|132160|sp|P00866|RBS_TOBACRIBULOSE BISPHOSPHATE CA... +3   226  6.8e-18   1
gi|132146|sp|P16031|RBS_LARLARIBULOSE BISPHOSPHATE CA... +3   226  6.8e-18   1
gi|132145|sp|P08705|RBS_HELANRIBULOSE BISPHOSPHATE CA... +3   225  8.6e-18   1
gi|132106|sp|P07689|RBS3_PEARIBULOSE BISPHOSPHATE CAR... +3   225  8.6e-18   1
gi|132097|sp|P00869|RBS2_PEARIBULOSE BISPHOSPHATE CAR... +3   225  8.6e-18   1
gi|132147|sp|P05348|RBS_MAIZERIBULOSE BISPHOSPHATE CA... +3   225  8.6e-18   1
gi|167270|gb|AAA33036.1|(M38316) ribulose 1,5-bisphos... +3   225  8.6e-18   1
gi|170502|gb|AAA34191.1|(M15235) ribulose-1,5-bisphos... +3   225  8.6e-18   1
gi|585787|sp|Q04450|RBS2_MESCRRIBULOSE BISPHOSPHATE C... +3   225  8.6e-18   1
gi|585791|sp|Q08186|RBS6_MESCRRIBULOSE BISPHOSPHATE C... +3   225  8.6e-18   1
gi|1405796|emb|CAA67061.1|(X98414) ribulose-bisphosph... +3   225  8.6e-18   1
gi|6063022|gb|AAF03096.1|AF162195_1(AF162195) ribulos... +3   225  8.6e-18   1
gi|167272|gb|AAA33037.1|(M38317) ribulose 1,5-bisphos... +3   224  1.1e-17   1
gi|585788|sp|Q08183|RBS3_MESCRRIBULOSE BISPHOSPHATE C... +3   224  1.1e-17   1
gi|3914608|sp|Q42915|RBS_MANESRIBULOSE BISPHOSPHATE C... +3   223  1.4e-17   1
gi|3914585|sp|O22077|RBS_FAGCRRIBULOSE BISPHOSPHATE C... +3   223  1.4e-17   1
gi|132102|sp|P10797|RBS3_ARATHRIBULOSE BISPHOSPHATE C... +3   222  1.8e-17   1
gi|132110|sp|P10798|RBS4_ARATHRIBULOSE BISPHOSPHATE C... +3   222  1.8e-17   1
gi|132086|sp|P00865|RBS1_SOYBNRIBULOSE BISPHOSPHATE C... +3   222  1.8e-17   1
gi|19464|emb|CAA38346.1|(X54464) ribulose  bisphospha... +3   222  1.8e-17   1
gi|585789|sp|Q08184|RBS4_MESCRRIBULOSE BISPHOSPHATE C... +3   222  1.8e-17   1
gi|68052|pir||RKIXSribulose-bisphosphate carboxylase ... +3   221  2.3e-17   1
gi|585786|sp|P16032|RBS1_MESCRRIBULOSE BISPHOSPHATE C... +3   221  2.3e-17   1
gi|132150|sp|P10053|RBS_PINTHRIBULOSE BISPHOSPHATE CA... +3   220  2.9e-17   1



Locally-aligned regions (HSPs) with respect to query sequence:

Locus_ID                Frame 3 Hits
gi|3914600             |__________________________________________________
gi|132153              |     _____________________________________________
gi|403160              |     _____________________________________________
gi|3914601             |     _____________________________________________
gi|464595              |     _____________________________________________
gi|3928152             |     _____________________________________________
gi|132120              |     _____________________________________________
gi|132123              |     _____________________________________________
gi|132125              |     _____________________________________________
gi|3914604             |      ____________________________________________
gi|6635351             |      ____________________________________________
gi|132161              |     _____________________________________________
gi|132118              |     _____________________________________________
gi|417593              |     _____________________________________________
gi|132080              |     _____________________________________________
gi|132095              |     _____________________________________________
gi|132085              |     _____________________________________________
gi|132079              |     _____________________________________________
gi|170504              |     _____________________________________________
gi|3914586             |     _____________________________________________
gi|132104              |     _____________________________________________
gi|132112              |     _____________________________________________
gi|1673456             |      ___________________________________________ 
gi|132071              |     _____________________________________________
gi|1055368             |     _____________________________________________
gi|1079736             |     _____________________________________________
gi|132160              |     _____________________________________________
gi|132146              |   _______________________________________________
gi|132145              |      ____________________________________________
gi|132106              |     _____________________________________________
gi|132097              |     _____________________________________________
gi|132147              |      ___________________________________________ 
gi|167270              |     _____________________________________________
gi|170502              |     _____________________________________________
gi|585787              |     _____________________________________________
gi|585791              |     _____________________________________________
gi|1405796             |      ____________________________________________
gi|6063022             |      ____________________________________________
gi|167272              |     _____________________________________________
gi|585788              |     _____________________________________________
gi|3914608             |     _____________________________________________
gi|3914585             |     _____________________________________________
gi|132102              |     _____________________________________________
gi|132110              |     _____________________________________________
gi|132086              |     ____________________________________________ 
gi|19464               |   _______________________________________________
gi|585789              |     _____________________________________________
gi|68052               |     _____________________________________________
gi|585786              |     _____________________________________________
gi|132150              |   _______________________________________________
Prosite Hits:                            ______                           
                        __________________________________________________
Query sequence:        |            |           |            |            | 79
                       0           20          40           60
__________________
Prosite hits:
   TYR_PHOSPHO_SITE     Tyrosine kinase phosphorylation site.    29..36
__________________


Use the  and  icons to retrieve links to Entrez:
E = Retrieve Entrez links (e.g., Medline abstracts, FASTA-formatted sequence reports).
R = Retrieve links to Related sequences (neighbors).

Use the  icon (if present) to retrieve links to the Sequence Retrieval System (SRS).

Use the  icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .

Use the  icon (if present) to retrieve links to the Protein Data Bank database.

WARNING:  Descriptions of 304 database sequences were not reported due to the
          limiting value of parameter V = 50.



 >gi|3914600|sp|O64416|RBS_MARPA  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            PRECURSOR (RUBISCO SMALL SUBUNIT) >gi|3168587|dbj|BAA28610.1|
            (AB004883) ribulose 1,5-bisphosphate carboxylase/oxygenase small
            subunit [Marchantia paleacea]
            Length = 180

Frame  3 hits (HSPs):              ______________________                 
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |             |             |             |        | 180
                       0            50           100           150
__________________

Annotated Domains:
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 59..178
   PRODOM               PD055882: RBS_MARPA                      1..57
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      59..177
   PROSITE              ATP_GTP_A: ATP/GTP-binding site motif A  36..43
__________________


  Plus Strand HSPs:

 Score = 258 (90.8 bits), Expect = 2.8e-21, P = 2.8e-21
 Identities = 44/77 (57%), Positives = 55/77 (71%), Frame = +3

Query:     6 GSIGWKRKIVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCL 185
             G   W+ K  +NGS+  CM+ W P NN KFETLSYLPPLS +++AK+IDY +K GW PC+
Sbjct:    41 GKSEWQTKTQTNGSRVSCMQVWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCI 100

Query:   186 EFDELGCVRKENSHMPG 236
             EFD  G V +E S MPG
Sbjct:   101 EFDVQGTVTREGSTMPG 117


 >gi|132153|sp|P24007|RBS_PYRPY  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            PRECURSOR (RUBISCO SMALL SUBUNIT) >gi|218021|dbj|BAA00450.1|
            (D00572) RuBisCO small subunit [Pyrus pyrifolia]
            Length = 183

Frame  3 hits (HSPs):                ____________________                 
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |            |         | 183
                       0            50           100          150
__________________

Annotated Domains:
   DOMO                 DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 61..180
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 61..180
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 23..40
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 49..67
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 70..96
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 98..113
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 120..149
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 154..180
   PRODOM               PD027467: RBS(2)                         1..24
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      26..59
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      61..179
__________________


  Plus Strand HSPs:

 Score = 241 (84.8 bits), Expect = 1.7e-19, P = 1.7e-19
 Identities = 43/70 (61%), Positives = 52/70 (74%), Frame = +3

Query:    30 IVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFD-ELGC 206
             I SNG +  CM+ W P+  KKFETLSYLPPLS ES+AKE+DY L+K W+PCLEF+ E G 
Sbjct:    51 IASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGF 110

Query:   207 VRKENSHMPG 236
             V +EN   PG
Sbjct:   111 VYRENHRSPG 120


 >gi|403160|gb|AAA33866.1|  (L24497) ribulose 1,5-bisphosphate carboxylase small
            subunit [Malus domestica X Pyrus communis]
            Length = 179

Frame  3 hits (HSPs):               _____________________                 
                        __________________________________________________
Database sequence:     |             |             |             |        | 179
                       0            50           100           150

  Plus Strand HSPs:

 Score = 240 (84.5 bits), Expect = 2.2e-19, P = 2.2e-19
 Identities = 43/70 (61%), Positives = 53/70 (75%), Frame = +3

Query:    30 IVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFD-ELGC 206
             I SNG +  CM+ W P+  KKFETLSYLPPLS ES+AKE+DY L+K W+PCLEF+ E G 
Sbjct:    47 IASNGGRVQCMQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGF 106

Query:   207 VRKENSHMPG 236
             V +EN+  PG
Sbjct:   107 VYRENNRSPG 116


 >gi|3914601|sp|O65194|RBS_MEDSA  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            PRECURSOR (RUBISCO SMALL SUBUNIT) >gi|7436564|pir||T09336
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain -
            alfalfa >gi|3044116|gb|AAC13293.1| (AF056315)
            ribulose-1,5-bisphosphate carboxylase small subunit [Medicago
            sativa]
            Length = 180

Frame  3 hits (HSPs):                ____________________                 
Annotated Domains:           ____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 180
                       0            50           100           150
__________________

Annotated Domains:
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 58..177
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 19..36
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 46..64
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 67..93
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 95..110
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 117..146
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 151..177
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      21..56
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      58..176
__________________


  Plus Strand HSPs:

 Score = 239 (84.1 bits), Expect = 2.8e-19, P = 2.8e-19
 Identities = 41/70 (58%), Positives = 53/70 (75%), Frame = +3

Query:    30 IVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFD-ELGC 206
             I SNG +  CM+ W P+  KKFETLSYLPPL++E +AKE++Y ++KGWIPCLEF+ E G 
Sbjct:    48 IASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELEKGF 107

Query:   207 VRKENSHMPG 236
             V +EN   PG
Sbjct:   108 VYRENHRSPG 117


 >gi|464595|sp|Q02980|RBS_MALSP  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            PRECURSOR (RUBISCO SMALL SUBUNIT) >gi|478399|pir||JQ2241
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain
            precursor - apple tree >gi|19581|emb|CAA46475.1| (X65494) ribulose
            bisphosphate carboxylase [Malus sp.]
            Length = 183

Frame  3 hits (HSPs):                ____________________                 
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |            |         | 183
                       0            50           100          150
__________________

Annotated Domains:
   DOMO                 DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 61..180
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 61..180
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 23..40
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 49..67
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 70..96
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 98..113
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 120..149
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 154..180
   PRODOM               PD027467: RBS(2)                         1..24
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      26..59
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      61..179
__________________


  Plus Strand HSPs:

 Score = 238 (83.8 bits), Expect = 3.6e-19, P = 3.6e-19
 Identities = 43/70 (61%), Positives = 52/70 (74%), Frame = +3

Query:    30 IVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFD-ELGC 206
             I SNG +  CM+ W P+  KKFETLSYLPPLS ES+AKE+DY L+K W+PCLEF+ E G 
Sbjct:    51 IASNGGRVQCMQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGF 110

Query:   207 VRKENSHMPG 236
             V +EN   PG
Sbjct:   111 VYRENHRSPG 120


 >gi|3928152|emb|CAA10290.1|  (AJ131050) ribulose 1,5-bisphosphate carboxylase
            small subunit [Cicer arietinum]
            Length = 181

Frame  3 hits (HSPs):                ____________________                 
                        __________________________________________________
Database sequence:     |             |             |             |        | 181
                       0            50           100           150

  Plus Strand HSPs:

 Score = 238 (83.8 bits), Expect = 3.6e-19, P = 3.6e-19
 Identities = 40/70 (57%), Positives = 55/70 (78%), Frame = +3

Query:    30 IVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFD-ELGC 206
             I SNG + +CM+ W PI  KKFETLSYLPPL++E + KE++Y L+KGW+PCLEF+ E G 
Sbjct:    49 IASNGGRVHCMQVWPPIGKKKFETLSYLPPLTEEQLLKEVEYLLRKGWVPCLEFELEKGF 108

Query:   207 VRKENSHMPG 236
             V +E+++ PG
Sbjct:   109 VYREHNNSPG 118


 >gi|132120|sp|P26575|RBSA_SOLTU  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            2A PRECURSOR (RUBISCO SMALL SUBUNIT 2A) >gi|68078|pir||RKPOS2
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) precursor small
            chain rbcS-2a - potato >gi|21565|emb|CAA49414.1| (X69760) ribulose
            bisphosphate carboxylase [Solanum tuberosum]
            Length = 180

Frame  3 hits (HSPs):                ____________________                 
Annotated Domains:           ____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 180
                       0            50           100           150
__________________

Annotated Domains:
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 58..177
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 19..36
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 46..64
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 67..93
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 95..110
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 117..146
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 151..177
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      21..56
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      58..176
__________________


  Plus Strand HSPs:

 Score = 234 (82.4 bits), Expect = 9.6e-19, P = 9.6e-19
 Identities = 42/70 (60%), Positives = 52/70 (74%), Frame = +3

Query:    30 IVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFD-ELGC 206
             I SNG +  CM+ W PIN KK+ETLSYLP LSDE + KE++Y LK GW+PCLEF+ E G 
Sbjct:    48 IASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGF 107

Query:   207 VRKENSHMPG 236
             V +EN+  PG
Sbjct:   108 VYRENNKSPG 117


 >gi|132123|sp|P26576|RBSB_SOLTU  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            2B PRECURSOR (RUBISCO SMALL SUBUNIT 2B) >gi|68079|pir||RKPO2B
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) precursor small
            chain rbcS-2b - potato >gi|21567|emb|CAA49415.1| (X69761) ribulose
            bisphosphate carboxylase [Solanum tuberosum]
            Length = 180

Frame  3 hits (HSPs):                ____________________                 
Annotated Domains:           ____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 180
                       0            50           100           150
__________________

Annotated Domains:
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 58..177
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 19..36
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 46..64
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 67..93
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 95..110
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 117..146
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 151..177
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      21..56
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      58..176
__________________


  Plus Strand HSPs:

 Score = 234 (82.4 bits), Expect = 9.6e-19, P = 9.6e-19
 Identities = 42/70 (60%), Positives = 52/70 (74%), Frame = +3

Query:    30 IVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFD-ELGC 206
             I SNG +  CM+ W PIN KK+ETLSYLP LSDE + KE++Y LK GW+PCLEF+ E G 
Sbjct:    48 IASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGF 107

Query:   207 VRKENSHMPG 236
             V +EN+  PG
Sbjct:   108 VYRENNKSPG 117


 >gi|132125|sp|P26577|RBSC_SOLTU  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            2C PRECURSOR (RUBISCO SMALL SUBUNIT 2C) >gi|68080|pir||RKPO2C
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) precursor small
            chain rbcS-2c - potato >gi|21569|emb|CAA49416.1| (X69762) ribulose
            bisphosphate carboxylase [Solanum tuberosum]
            Length = 180

Frame  3 hits (HSPs):                ____________________                 
Annotated Domains:           ____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 180
                       0            50           100           150
__________________

Annotated Domains:
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 58..177
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 19..36
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 46..64
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 67..93
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 95..110
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 117..146
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 151..177
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      21..56
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      58..176
__________________


  Plus Strand HSPs:

 Score = 234 (82.4 bits), Expect = 9.6e-19, P = 9.6e-19
 Identities = 42/70 (60%), Positives = 52/70 (74%), Frame = +3

Query:    30 IVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFD-ELGC 206
             I SNG +  CM+ W PIN KK+ETLSYLP LSDE + KE++Y LK GW+PCLEF+ E G 
Sbjct:    48 IASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGF 107

Query:   207 VRKENSHMPG 236
             V +EN+  PG
Sbjct:   108 VYRENNKSPG 117


 >gi|3914604|sp|Q40250|RBS_LACSA  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            PRECURSOR (RUBISCO SMALL SUBUNIT) >gi|217946|dbj|BAA03103.1|
            (D14001) riburose-1,5-bisphosphate carboxylase/oxygenase small
            subunit precursor [Lactuca sativa]
            Length = 181

Frame  3 hits (HSPs):                ____________________                 
Annotated Domains:          _____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 181
                       0            50           100           150
__________________

Annotated Domains:
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 58..177
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 19..36
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 46..64
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 67..93
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 95..110
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 117..146
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 151..177
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      21..56
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      58..176
__________________


  Plus Strand HSPs:

 Score = 234 (82.4 bits), Expect = 9.6e-19, P = 9.6e-19
 Identities = 42/68 (61%), Positives = 52/68 (76%), Frame = +3

Query:    36 SNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFD-ELGCVR 212
             SNG +  CMK W PI  KK+ETLSYLPPLSDE+++KEIDY ++  WIPCLEF+ E G V 
Sbjct:    50 SNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVY 109

Query:   213 KENSHMPG 236
             +E+ H PG
Sbjct:   110 REHHHSPG 117


 >gi|6635351|gb|AAF19793.1|AF162210_1  (AF162210) ribulose-1,5-bisphosphate
            carboxylase/oxygenase small subunit [Lactuca sativa]
            Length = 181

Frame  3 hits (HSPs):                ____________________                 
                        __________________________________________________
Database sequence:     |             |             |             |        | 181
                       0            50           100           150

  Plus Strand HSPs:

 Score = 233 (82.0 bits), Expect = 1.2e-18, P = 1.2e-18
 Identities = 41/68 (60%), Positives = 52/68 (76%), Frame = +3

Query:    36 SNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFD-ELGCVR 212
             SNG +  CMK W PI  KK+ETLSYLPPLSDE+++KEIDY ++  W+PCLEF+ E G V 
Sbjct:    50 SNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWVPCLEFELEHGFVY 109

Query:   213 KENSHMPG 236
             +E+ H PG
Sbjct:   110 REHHHSPG 117


 >gi|132161|sp|P17673|RBS_TRIRP  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            PRECURSOR (RUBISCO SMALL SUBUNIT) >gi|68084|pir||RKJYS
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain
            precursor - white clover >gi|295846|emb|CAA36542.1| (X52293)
            ribulose bisphosphate carboxylase [Trifolium repens]
            Length = 178

Frame  3 hits (HSPs):               _____________________                 
Annotated Domains:          _____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 178
                       0            50           100           150
__________________

Annotated Domains:
   DOMO                 DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 56..175
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 56..175
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 18..35
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 44..62
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 65..91
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 93..108
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 115..144
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 149..175
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      20..54
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      56..174
__________________


  Plus Strand HSPs:

 Score = 232 (81.7 bits), Expect = 1.6e-18, P = 1.6e-18
 Identities = 39/70 (55%), Positives = 53/70 (75%), Frame = +3

Query:    30 IVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFD-ELGC 206
             I SNGS+  CM+ W P+  KKFETLSYLPPL+DE + KE++Y L+KGW+PC+EF+ E G 
Sbjct:    46 ITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQLLKEVEYLLRKGWVPCVEFELEKGF 105

Query:   207 VRKENSHMPG 236
             V ++ +  PG
Sbjct:   106 VHRQYNSSPG 115


 >gi|132118|sp|P26573|RBS8_NICPL  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            8B PRECURSOR (RUBISCO SMALL SUBUNIT 8B) >gi|68055|pir||RKNTSV
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain
            precursor - curled-leaved tobacco >gi|19706|emb|CAA31994.1|
            (X13711) ribulose bisphosphate carboxylase [Nicotiana
            plumbaginifolia] >gi|170318|gb|AAA34110.1| (M36685) ribulose
            bisphosphate carboxylase [Nicotiana plumbaginifolia]
            Length = 180

Frame  3 hits (HSPs):                ____________________                 
Annotated Domains:           ____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 180
                       0            50           100           150
__________________

Annotated Domains:
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 58..177
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 19..36
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 46..64
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 67..93
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 95..110
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 117..146
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 151..177
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      21..56
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      58..176
   PROSITE              EF_HAND: EF-hand calcium-binding domain. 77..89
__________________


  Plus Strand HSPs:

 Score = 230 (81.0 bits), Expect = 2.6e-18, P = 2.6e-18
 Identities = 41/70 (58%), Positives = 50/70 (71%), Frame = +3

Query:    30 IVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFD-ELGC 206
             I SNG +  CM+ W PIN KK+ETLSYLP LS E +  EI+Y LK GW+PCLEF+ E G 
Sbjct:    48 IASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEIEYLLKSGWVPCLEFETERGF 107

Query:   207 VRKENSHMPG 236
             V +E+ H PG
Sbjct:   108 VYREHHHSPG 117


 >gi|417593|sp|P32764|RBS3_SOLTU  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 3
            PRECURSOR (RUBISCO SMALL SUBUNIT 3) >gi|322792|pir||S31498
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain -
            potato >gi|21571|emb|CAA49417.1| (X69763) ribulose bisphosphate
            carboxylase [Solanum tuberosum]
            Length = 181

Frame  3 hits (HSPs):                ____________________                 
Annotated Domains:          _____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 181
                       0            50           100           150
__________________

Annotated Domains:
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 59..178
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 19..36
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 47..65
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 68..94
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 96..111
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 118..147
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 152..178
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      21..57
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      59..177
__________________


  Plus Strand HSPs:

 Score = 230 (81.0 bits), Expect = 2.6e-18, P = 2.6e-18
 Identities = 41/70 (58%), Positives = 51/70 (72%), Frame = +3

Query:    30 IVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFD-ELGC 206
             + SNG +  CM+ W PIN KK+ETLSYLP LSDE + KE++Y LK GW+PCLEF+ E G 
Sbjct:    49 LASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGF 108

Query:   207 VRKENSHMPG 236
             V +EN   PG
Sbjct:   109 VYRENHKSPG 118


 >gi|132080|sp|P22433|RBS1_NICSY  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            S41 PRECURSOR (RUBISCO SMALL SUBUNIT S41) >gi|68070|pir||RKNT41
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain SS41
            precursor - wood tobacco >gi|295823|emb|CAA37516.1| (X53426) NySS41
            [Nicotiana sylvestris]
            Length = 181

Frame  3 hits (HSPs):                ____________________                 
Annotated Domains:           ____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 181
                       0            50           100           150
__________________

Annotated Domains:
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 59..178
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 20..37
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 47..65
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 68..94
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 96..111
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 118..147
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 152..178
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      22..57
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      59..177
__________________


  Plus Strand HSPs:

 Score = 230 (81.0 bits), Expect = 2.6e-18, P = 2.6e-18
 Identities = 40/70 (57%), Positives = 52/70 (74%), Frame = +3

Query:    30 IVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFD-ELGC 206
             I SNG +  CM+ W PIN KK+ETLSYLP LS+E + +E++Y LK GW+PCLEF+ E G 
Sbjct:    49 IASNGGRVQCMQVWPPINKKKYETLSYLPDLSEEQLLREVEYLLKNGWVPCLEFETEHGF 108

Query:   207 VRKENSHMPG 236
             V +EN+  PG
Sbjct:   109 VYRENNKSPG 118


 >gi|132095|sp|P07179|RBS2_LYCES  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            2A PRECURSOR (RUBISCO SMALL SUBUNIT 2A) (LESS 5)
            >gi|68074|pir||RKTOS2 ribulose-bisphosphate carboxylase (EC
            4.1.1.39) small chain 2 precursor - tomato
            >gi|170498|gb|AAA34189.1| (M13543) ribulose-1,5-bisphophate
            carboxylase/ oxygenase small subunit (EC 4.1.1.39) [Lycopersicon
            esculentum] >gi|4456641|emb|CAA29401.2| (X05983) ribulose
            1,5-bisphosphate carboxylase/oxygenase [Lycopersicon esculentum]
            Length = 180

Frame  3 hits (HSPs):                ____________________                 
Annotated Domains:           ____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 180
                       0            50           100           150
__________________

Annotated Domains:
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 58..177
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 19..36
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 46..64
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 67..93
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 95..110
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 117..146
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 151..177
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      21..56
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      58..176
   PROSITE              EF_HAND: EF-hand calcium-binding domain. 77..89
__________________


  Plus Strand HSPs:

 Score = 230 (81.0 bits), Expect = 2.6e-18, P = 2.6e-18
 Identities = 42/70 (60%), Positives = 51/70 (72%), Frame = +3

Query:    30 IVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFD-ELGC 206
             I SNG +  CM+ W PIN KK+ETLSYLP LSDE +  EI+Y LK GW+PCLEF+ E G 
Sbjct:    48 IASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGF 107

Query:   207 VRKENSHMPG 236
             V +EN+  PG
Sbjct:   108 VYRENNKSPG 117


 >gi|132085|sp|P26574|RBS1_SOLTU  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1
            PRECURSOR (RUBISCO SMALL SUBUNIT 1) >gi|68077|pir||RKPOS1
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) precursor small
            chain rbcS-1 - potato >gi|21563|emb|CAA49413.1| (X69759) ribulose
            bisphosphate carboxylase [Solanum tuberosum]
            Length = 181

Frame  3 hits (HSPs):                ____________________                 
Annotated Domains:           ____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 181
                       0            50           100           150
__________________

Annotated Domains:
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 59..178
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 20..37
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 47..65
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 68..94
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 96..111
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 118..147
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 152..178
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      22..57
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      59..177
   PROSITE              SOYBEAN_KUNITZ: Soybean trypsin inhibito 76..92
__________________


  Plus Strand HSPs:

 Score = 229 (80.6 bits), Expect = 3.3e-18, P = 3.3e-18
 Identities = 41/70 (58%), Positives = 51/70 (72%), Frame = +3

Query:    30 IVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFD-ELGC 206
             I SNG +  CM+ W PIN KK+ETLSYLP L+DE + KE++Y LK GW+PCLEF+ E G 
Sbjct:    49 IASNGGRVRCMQVWPPINMKKYETLSYLPDLTDEQLLKEVEYLLKNGWVPCLEFETEHGF 108

Query:   207 VRKENSHMPG 236
             V +EN   PG
Sbjct:   109 VYRENHKSPG 118


 >gi|132079|sp|P08706|RBS1_LYCES  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1
            PRECURSOR (RUBISCO SMALL SUBUNIT 1) (LESS17) >gi|68075|pir||RKTOS1
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain 1
            precursor - tomato >gi|170496|gb|AAA34188.1| (M13542)
            ribulose-1,5-bisphophate carboxylase/ oxygenase small subunit
            [Lycopersicon esculentum] >gi|295814|emb|CAA29400.1| (X05982)
            ribulose 1,5-bisphosphate carboxylase/oxygenase [Lycopersicon
            esculentum]
            Length = 181

Frame  3 hits (HSPs):                ____________________                 
Annotated Domains:          _____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 181
                       0            50           100           150
__________________

Annotated Domains:
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 59..178
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 19..36
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 47..65
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 68..94
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 96..111
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 118..147
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 152..178
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      21..57
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      59..177
   PROSITE              EF_HAND: EF-hand calcium-binding domain. 78..90
__________________


  Plus Strand HSPs:

 Score = 229 (80.6 bits), Expect = 3.3e-18, P = 3.3e-18
 Identities = 41/70 (58%), Positives = 51/70 (72%), Frame = +3

Query:    30 IVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFD-ELGC 206
             + SNG +  CM+ W PIN KK+ETLSYLP LSDE +  EI+Y LK GW+PCLEF+ E G 
Sbjct:    49 LASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETERGF 108

Query:   207 VRKENSHMPG 236
             V +EN+  PG
Sbjct:   109 VYRENNSSPG 118


 >gi|170504|gb|AAA34192.1|  (M15236) ribulose-1,5-bisphosphate carboxylase, small
            subunit precursor [Lycopersicon esculentum]
            Length = 180

Frame  3 hits (HSPs):                ____________________                 
                        __________________________________________________
Database sequence:     |             |             |             |        | 180
                       0            50           100           150

  Plus Strand HSPs:

 Score = 229 (80.6 bits), Expect = 3.3e-18, P = 3.3e-18
 Identities = 41/70 (58%), Positives = 51/70 (72%), Frame = +3

Query:    30 IVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFD-ELGC 206
             I SNG +  CM+ W PIN KK+ETLSYLP LSDE +  E++Y LK GW+PCLEF+ E G 
Sbjct:    48 IASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEVEYLLKNGWVPCLEFETEHGF 107

Query:   207 VRKENSHMPG 236
             V +EN+  PG
Sbjct:   108 VYRENNKSPG 117


 >gi|3914586|sp|O65349|RBS_CAPAN  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            PRECURSOR (RUBISCO SMALL SUBUNIT) >gi|3152715|gb|AAC17126.1|
            (AF065615) ribulose 1,5-bisphosphate carboxylase/oxygenase small
            subunit [Capsicum annuum]
            Length = 187

Frame  3 hits (HSPs):               ____________________                  
Annotated Domains:          ____________________________________________  
                        __________________________________________________
Database sequence:     |             |            |            |          | 187
                       0            50          100          150
__________________

Annotated Domains:
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 58..177
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 19..36
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 46..64
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 67..93
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 95..110
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 117..146
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 151..177
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      21..56
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      58..176
__________________


  Plus Strand HSPs:

 Score = 229 (80.6 bits), Expect = 3.3e-18, P = 3.3e-18
 Identities = 42/70 (60%), Positives = 51/70 (72%), Frame = +3

Query:    30 IVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFD-ELGC 206
             I SNG +  CM  W PIN KK+ETLSYLP LSDE + KEI+Y L+KGW+PCLEF+ E G 
Sbjct:    48 IASNGGRVECMLVWPPINKKKYETLSYLPDLSDEQLLKEIEYLLQKGWVPCLEFETEHGF 107

Query:   207 VRKENSHMPG 236
             V +E+   PG
Sbjct:   108 VYREHHRSPG 117


 >gi|132104|sp|P07180|RBS3_LYCES  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            3A/3C PRECURSOR (RUBISCO SMALL SUBUNIT 3A/3C) >gi|68072|pir||RKTO3C
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain 3A
            precursor - tomato >gi|19334|emb|CAA29402.1| (X05984) ribulose
            1,5-bisphosphate carboxylase/oxygenase [Lycopersicon esculentum]
            >gi|19338|emb|CAA29404.1| (X05986) ribulose 1,5-bisphosphate
            carboxylase/oxygenase [Lycopersicon esculentum]
            >gi|170500|gb|AAA34190.1| (M13544) ribulose-1,5-bisphophate
            carboxylase/ oxygenase small subunit [Lycopersicon esculentum]
            Length = 180

Frame  3 hits (HSPs):                ____________________                 
Annotated Domains:           ____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 180
                       0            50           100           150
__________________

Annotated Domains:
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 58..177
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 19..36
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 46..64
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 67..93
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 95..110
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 117..146
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 151..177
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      21..56
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      58..176
   PROSITE              EF_HAND: EF-hand calcium-binding domain. 77..89
__________________


  Plus Strand HSPs:

 Score = 228 (80.3 bits), Expect = 4.2e-18, P = 4.2e-18
 Identities = 42/70 (60%), Positives = 50/70 (71%), Frame = +3

Query:    30 IVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFD-ELGC 206
             I SNG +  CM+ W PIN KK+ETLSYLP LSDE +  EI+Y LK GW+PCLEF+ E G 
Sbjct:    48 IASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGF 107

Query:   207 VRKENSHMPG 236
             V +EN   PG
Sbjct:   108 VYRENHKSPG 117


 >gi|132112|sp|P05349|RBS4_LYCES  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            3B PRECURSOR (RUBISCO SMALL SUBUNIT 3B) >gi|68071|pir||RKTO3B
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain 3B
            precursor - tomato >gi|19336|emb|CAA29403.1| (X05985) ribulose
            1,5-bisphosphate carboxylase/oxyenase [Lycopersicon esculentum]
            >gi|218318|dbj|BAA01888.1| (D11112) ribulose 1,5-bisphosphate
            carboxylase/oxygenase small subunit [Lycopersicon esculentum]
            Length = 180

Frame  3 hits (HSPs):                ____________________                 
Annotated Domains:           ____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 180
                       0            50           100           150
__________________

Annotated Domains:
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 58..177
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 19..36
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 46..64
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 67..93
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 95..110
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 117..146
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 151..177
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      21..56
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      58..176
   PROSITE              EF_HAND: EF-hand calcium-binding domain. 77..89
__________________


  Plus Strand HSPs:

 Score = 228 (80.3 bits), Expect = 4.2e-18, P = 4.2e-18
 Identities = 42/70 (60%), Positives = 50/70 (71%), Frame = +3

Query:    30 IVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFD-ELGC 206
             I SNG +  CM+ W PIN KK+ETLSYLP LSDE +  EI+Y LK GW+PCLEF+ E G 
Sbjct:    48 IASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGF 107

Query:   207 VRKENSHMPG 236
             V +EN   PG
Sbjct:   108 VYRENHKSPG 117


 >gi|1673456|emb|CAA70416.1|  (Y09214) rubisco small subunit [Zea mays]
            Length = 170

Frame  3 hits (HSPs):              ____________________                   
                        __________________________________________________
Database sequence:     |              |              |             |      | 170
                       0             50            100           150

  Plus Strand HSPs:

 Score = 228 (80.3 bits), Expect = 4.2e-18, P = 4.2e-18
 Identities = 40/67 (59%), Positives = 49/67 (73%), Frame = +3

Query:    33 VSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFDELGCVR 212
             VSNG +  CM+ W    NKKFETLSYLPPLS + + K++DY L+ GWIPCLEF +LG V 
Sbjct:    39 VSNGGRIRCMQVWPAYGNKKFETLSYLPPLSTDDLLKQVDYLLRNGWIPCLEFSKLGFVY 98

Query:   213 KENSHMP 233
             +ENS  P
Sbjct:    99 RENSTSP 105


 >gi|132071|sp|P10647|RBS0_SOLTU  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN C
            PRECURSOR (RUBISCO SMALL SUBUNIT C) >gi|68076|pir||RKPOSC
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) precursor small
            chain rbcS-c - potato >gi|169557|gb|AAA33838.1| (J03613) ribulose
            bisphosphate carboxylase (EC 4.1.1.39) [Solanum tuberosum]
            Length = 181

Frame  3 hits (HSPs):                ____________________                 
Annotated Domains:          _____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 181
                       0            50           100           150
__________________

Annotated Domains:
   DOMO                 DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 59..178
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 59..178
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 19..36
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 47..65
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 68..94
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 96..111
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 118..147
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 152..178
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      21..57
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      59..177
__________________


  Plus Strand HSPs:

 Score = 227 (79.9 bits), Expect = 5.3e-18, P = 5.3e-18
 Identities = 40/70 (57%), Positives = 52/70 (74%), Frame = +3

Query:    30 IVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFD-ELGC 206
             + SNG +  CM+ W PIN KK+ETLSYLP LSDE + KE++Y LK GW+PCLEF+ E G 
Sbjct:    49 LASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGF 108

Query:   207 VRKENSHMPG 236
             V +E++  PG
Sbjct:   109 VYREHNSSPG 118


 >gi|1055368|gb|AAA81328.1|  (U39567) ribulose-1,5-bisphosphate carboxylase small
            subunit [Glycine max]
            Length = 178

Frame  3 hits (HSPs):               _____________________                 
                        __________________________________________________
Database sequence:     |             |             |             |        | 178
                       0            50           100           150

  Plus Strand HSPs:

 Score = 227 (79.9 bits), Expect = 5.3e-18, P = 5.3e-18
 Identities = 40/70 (57%), Positives = 51/70 (72%), Frame = +3

Query:    30 IVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFD-ELGC 206
             I SNG +  CM+ W P+  KKFETLSYLP L D  +AKE++Y L+KGWIPCLEF+ E G 
Sbjct:    46 IASNGGRVQCMQVWPPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGF 105

Query:   207 VRKENSHMPG 236
             V +E++  PG
Sbjct:   106 VYREHNRSPG 115


 >gi|1079736|gb|AAA82069.1|  (U39856) ribulose 1,5-bisphosphate carboxylase small
            subunit precursor [Glycine soja]
            Length = 178

Frame  3 hits (HSPs):               _____________________                 
                        __________________________________________________
Database sequence:     |             |             |             |        | 178
                       0            50           100           150

  Plus Strand HSPs:

 Score = 227 (79.9 bits), Expect = 5.3e-18, P = 5.3e-18
 Identities = 40/70 (57%), Positives = 51/70 (72%), Frame = +3

Query:    30 IVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFD-ELGC 206
             I SNG +  CM+ W P+  KKFETLSYLP L D  +AKE++Y L+KGWIPCLEF+ E G 
Sbjct:    46 IASNGGRVQCMQVWPPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGF 105

Query:   207 VRKENSHMPG 236
             V +E++  PG
Sbjct:   106 VYREHNRSPG 115


 >gi|132160|sp|P00866|RBS_TOBAC  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            PRECURSOR (RUBISCO SMALL SUBUNIT) (TSSU3-8) >gi|68056|pir||RKNTSP
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain
            precursor - common tobacco >gi|68068|pir||RKNTSS
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain
            precursor - wood tobacco >gi|19760|emb|CAA25862.1| (X01722) small
            subunit protein precursor [Nicotiana sylvestris]
            >gi|20024|emb|CAA26208.1| (X02353) small subunit ribulose
            1,5-bisphosphate carboxylase [Nicotiana tabacum]
            >gi|224384|prf||1103193A carboxylase,RBP [Nicotiana sylvestris]
            Length = 180

Frame  3 hits (HSPs):                ____________________                 
Annotated Domains:           ____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 180
                       0            50           100           150
__________________

Annotated Domains:
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 58..177
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 19..36
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 46..64
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 67..93
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 95..110
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 117..146
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 151..177
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      21..56
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      58..176
   PROSITE              EF_HAND: EF-hand calcium-binding domain. 77..89
__________________


  Plus Strand HSPs:

 Score = 226 (79.6 bits), Expect = 6.8e-18, P = 6.8e-18
 Identities = 40/70 (57%), Positives = 50/70 (71%), Frame = +3

Query:    30 IVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFD-ELGC 206
             I SNG +  CM+ W PIN KK+ETLSYLP LS E +  E++Y LK GW+PCLEF+ E G 
Sbjct:    48 IASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGF 107

Query:   207 VRKENSHMPG 236
             V +EN+  PG
Sbjct:   108 VYRENNKSPG 117


 >gi|132146|sp|P16031|RBS_LARLA  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            PRECURSOR (RUBISCO SMALL SUBUNIT) >gi|68050|pir||RKKHS
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain
            precursor (clone pGLRu117) - tamarack >gi|295822|emb|CAA34161.1|
            (X16039) ribulose-1,5-carboxylase/oxygenase [Larix laricina]
            Length = 189

Frame  3 hits (HSPs):                 ____________________                
Annotated Domains:          _____________________________________________ 
                        __________________________________________________
Database sequence:     |            |             |            |          | 189
                       0           50           100          150
__________________

Annotated Domains:
   DOMO                 DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 68..186
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 68..186
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 25..42
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 56..74
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 77..103
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 105..120
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 126..155
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 160..186
   PRODOM               PD154032: RBS(2)                         17..66
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      68..185
__________________


  Plus Strand HSPs:

 Score = 226 (79.6 bits), Expect = 6.8e-18, P = 6.8e-18
 Identities = 38/73 (52%), Positives = 52/73 (71%), Frame = +3

Query:    18 WKRKIVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFDE 197
             W++K  SNGS+  CM+ W P  NKKFETLSYLP L+ E + KE++Y LK  W+PCLEF+E
Sbjct:    54 WEQKTTSNGSRVRCMQVWPPYANKKFETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEFEE 113

Query:   198 LGCVRKENSHMPG 236
              G +++   + PG
Sbjct:   114 DGEIKRVYGNSPG 126


 >gi|132145|sp|P08705|RBS_HELAN  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            PRECURSOR (RUBISCO SMALL SUBUNIT) >gi|68087|pir||RKFSS
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain
            precursor - common sunflower >gi|18808|emb|CAA68490.1| (Y00431)
            ribulose bisphosphate carboxylase [Helianthus annuus]
            >gi|755735|emb|CAA28737.1| (X05079) RuBisCO (SSU) [Helianthus
            annuus]
            Length = 178

Frame  3 hits (HSPs):                ____________________                 
Annotated Domains:          _____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 178
                       0            50           100           150
__________________

Annotated Domains:
   DOMO                 DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 56..175
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 56..175
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 18..35
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 44..62
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 65..91
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 93..108
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 115..144
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 149..175
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      20..54
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      56..174
__________________


  Plus Strand HSPs:

 Score = 225 (79.2 bits), Expect = 8.6e-18, P = 8.6e-18
 Identities = 39/68 (57%), Positives = 51/68 (75%), Frame = +3

Query:    36 SNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFD-ELGCVR 212
             SNG +  CMK W P+  KK+ETLSYLPPL++  +AKE+DY L+K W+PCLEF+ E G V 
Sbjct:    48 SNGGRVQCMKVWPPLGLKKYETLSYLPPLTETQLAKEVDYLLRKKWVPCLEFELEHGFVY 107

Query:   213 KENSHMPG 236
             +EN+  PG
Sbjct:   108 RENARSPG 115


 >gi|132106|sp|P07689|RBS3_PEA  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 3A
            PRECURSOR (RUBISCO SMALL SUBUNIT 3A) >gi|68083|pir||RKPMS3
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain 3A
            precursor - garden pea >gi|20855|emb|CAA27864.1| (X04333) ribulose
            bisphosphate carboxylase [Pisum sativum] >gi|225288|prf||1211236A
            carboxylase,ribulose bisphosphate [Arachis hypogaea]
            Length = 180

Frame  3 hits (HSPs):                ____________________                 
Annotated Domains:           ____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 180
                       0            50           100           150
__________________

Annotated Domains:
   DOMO                 DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 58..177
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 58..177
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 20..37
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 46..64
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 67..93
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 95..110
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 117..146
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 151..177
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      24..56
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      58..176
__________________


  Plus Strand HSPs:

 Score = 225 (79.2 bits), Expect = 8.6e-18, P = 8.6e-18
 Identities = 39/70 (55%), Positives = 52/70 (74%), Frame = +3

Query:    30 IVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFD-ELGC 206
             I SNG +  CM+ W PI  KKFETLSYLPPL+ + + KE++Y L+KGW+PCLEF+ E G 
Sbjct:    48 ITSNGGRVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELEKGF 107

Query:   207 VRKENSHMPG 236
             V +E++  PG
Sbjct:   108 VYREHNKSPG 117


 >gi|132097|sp|P00869|RBS2_PEA  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 3C
            PRECURSOR (RUBISCO SMALL SUBUNIT 3C) (PSS15) >gi|68082|pir||RKPMS5
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain 3C
            precursor - garden pea >gi|20857|emb|CAA27865.1| (X04334) ribulose
            1.5-bisphosphate carboxylase (RBC) [Pisum sativum]
            >gi|20859|emb|CAA25390.1| (X00806) ribulose bisphosphate
            carboxylase [Pisum sativum] >gi|225289|prf||1211236B
            carboxylase,ribulose bisphosphate [Arachis hypogaea]
            Length = 180

Frame  3 hits (HSPs):                ____________________                 
Annotated Domains:           ____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 180
                       0            50           100           150
__________________

Annotated Domains:
   DOMO                 DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 58..177
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 58..177
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 20..37
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 46..64
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 67..93
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 95..110
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 117..146
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 151..177
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      24..56
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      58..176
__________________


  Plus Strand HSPs:

 Score = 225 (79.2 bits), Expect = 8.6e-18, P = 8.6e-18
 Identities = 39/70 (55%), Positives = 52/70 (74%), Frame = +3

Query:    30 IVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFD-ELGC 206
             I SNG +  CM+ W PI  KKFETLSYLPPL+ + + KE++Y L+KGW+PCLEF+ E G 
Sbjct:    48 ITSNGGRVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELEKGF 107

Query:   207 VRKENSHMPG 236
             V +E++  PG
Sbjct:   108 VYREHNKSPG 117


 >gi|132147|sp|P05348|RBS_MAIZE  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            PRECURSOR (RUBISCO SMALL SUBUNIT) >gi|68089|pir||RKZMS
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain
            precursor - maize >gi|22474|emb|CAA29784.1| (X06535)
            ribulose-1,5-bisphosphate carboxylase  (RuBPC) precursor [Zea mays]
            >gi|217964|dbj|BAA00120.1| (D00170) ribulose 1,5-bisphosphate
            carboxylase small subunit [Zea mays] >gi|359512|prf||1312317A
            ribulosebisphosphate carboxylase [Zea mays]
            Length = 170

Frame  3 hits (HSPs):              ____________________                   
Annotated Domains:        _______________________________________________ 
                        __________________________________________________
Database sequence:     |              |              |             |      | 170
                       0             50            100           150
__________________

Annotated Domains:
   DOMO                 DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 48..166
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 48..166
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 10..27
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 36..54
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 57..83
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 85..100
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 106..135
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 140..166
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      14..46
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      48..165
__________________


  Plus Strand HSPs:

 Score = 225 (79.2 bits), Expect = 8.6e-18, P = 8.6e-18
 Identities = 39/67 (58%), Positives = 49/67 (73%), Frame = +3

Query:    33 VSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFDELGCVR 212
             VSNG +  CM+ W    NKKFETLSYLPPLS + + K++DY L+ GWIPCLEF ++G V 
Sbjct:    39 VSNGGRIRCMQVWPAYGNKKFETLSYLPPLSTDDLLKQVDYLLRNGWIPCLEFSKVGFVY 98

Query:   213 KENSHMP 233
             +ENS  P
Sbjct:    99 RENSTSP 105


 >gi|167270|gb|AAA33036.1|  (M38316) ribulose 1,5-bisphosphate
            carboxylase/oxygenase small subunit [Mesembryanthemum crystallinum]
            Length = 180

Frame  3 hits (HSPs):               ____________________                  
                        __________________________________________________
Database sequence:     |             |             |             |        | 180
                       0            50           100           150

  Plus Strand HSPs:

 Score = 225 (79.2 bits), Expect = 8.6e-18, P = 8.6e-18
 Identities = 39/70 (55%), Positives = 50/70 (71%), Frame = +3

Query:    30 IVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFDEL-GC 206
             I SNG +  CM+ W P+  KKFETLSYLPPLS+ES+ KE+ Y L  GW+PCLEF+   G 
Sbjct:    46 IASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGF 105

Query:   207 VRKENSHMPG 236
             V +E+ + PG
Sbjct:   106 VYREHGNTPG 115


 >gi|170502|gb|AAA34191.1|  (M15235) ribulose-1,5-bisphosphate carboxylase, small
            subunit precursor [Lycopersicon esculentum]
            Length = 181

Frame  3 hits (HSPs):                ____________________                 
                        __________________________________________________
Database sequence:     |             |             |             |        | 181
                       0            50           100           150

  Plus Strand HSPs:

 Score = 225 (79.2 bits), Expect = 8.6e-18, P = 8.6e-18
 Identities = 40/70 (57%), Positives = 50/70 (71%), Frame = +3

Query:    30 IVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFD-ELGC 206
             + SNG +  CM+ W PIN KK+ETLSYLP  SDE +  EI+Y LK GW+PCLEF+ E G 
Sbjct:    49 LASNGGRVRCMQVWPPINMKKYETLSYLPDFSDEQLLSEIEYLLKNGWVPCLEFETERGF 108

Query:   207 VRKENSHMPG 236
             V +EN+  PG
Sbjct:   109 VYRENNSSPG 118


 >gi|585787|sp|Q04450|RBS2_MESCR  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 2
            PRECURSOR (RUBISCO SMALL SUBUNIT 2) >gi|479723|pir||S35246
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain -
            common ice plant >gi|304444|gb|AAA03694.1| (L10214) rubisco small
            subunit [Mesembryanthemum crystallinum]
            Length = 180

Frame  3 hits (HSPs):               ____________________                  
Annotated Domains:          _____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 180
                       0            50           100           150
__________________

Annotated Domains:
   DOMO                 DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 56..175
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 56..175
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 18..35
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 44..62
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 65..91
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 93..108
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 115..144
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 149..175
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      20..54
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      56..174
__________________


  Plus Strand HSPs:

 Score = 225 (79.2 bits), Expect = 8.6e-18, P = 8.6e-18
 Identities = 39/70 (55%), Positives = 50/70 (71%), Frame = +3

Query:    30 IVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFDEL-GC 206
             I SNG +  CM+ W P+  KKFETLSYLPPLS+ES+ KE+ Y L  GW+PCLEF+   G 
Sbjct:    46 IASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGF 105

Query:   207 VRKENSHMPG 236
             V +E+ + PG
Sbjct:   106 VYREHGNTPG 115


 >gi|585791|sp|Q08186|RBS6_MESCR  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 6
            PRECURSOR (RUBISCO SMALL SUBUNIT 6) >gi|479719|pir||S35242
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain -
            common ice plant >gi|304447|gb|AAA03698.1| (L10213) rubisco small
            subunit [Mesembryanthemum crystallinum]
            Length = 186

Frame  3 hits (HSPs):                ____________________                 
Annotated Domains:           ____________________________________________ 
                        __________________________________________________
Database sequence:     |             |            |             |         | 186
                       0            50          100           150
__________________

Annotated Domains:
   DOMO                 DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 62..181
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 62..181
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 23..40
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 50..68
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 71..97
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 99..114
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 121..150
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 155..181
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      25..60
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      62..180
__________________


  Plus Strand HSPs:

 Score = 225 (79.2 bits), Expect = 8.6e-18, P = 8.6e-18
 Identities = 39/70 (55%), Positives = 50/70 (71%), Frame = +3

Query:    30 IVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFDEL-GC 206
             + SNG K  CM+ W P+  KKFETLSYLPPLS+ES+ KE+ Y L  GW+PCLEF+   G 
Sbjct:    52 VPSNGGKVQCMQVWPPLGKKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGF 111

Query:   207 VRKENSHMPG 236
             V +E+ + PG
Sbjct:   112 VYREHGNTPG 121


 >gi|1405796|emb|CAA67061.1|  (X98414) ribulose-bisphosphate carboxylase [Pteris
            vittata]
            Length = 174

Frame  3 hits (HSPs):               ____________________                  
                        __________________________________________________
Database sequence:     |              |             |             |       | 174
                       0             50           100           150

  Plus Strand HSPs:

 Score = 225 (79.2 bits), Expect = 8.6e-18, P = 8.6e-18
 Identities = 37/68 (54%), Positives = 52/68 (76%), Frame = +3

Query:    33 VSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFDELGCVR 212
             +SNGS+   M  W P +NKKFETLSYLPPL+++ IAK+++Y ++KGW PC+EFD +G V 
Sbjct:    45 ISNGSRISAMLVWKPYDNKKFETLSYLPPLTNDQIAKQVEYMVRKGWTPCIEFDTIGSVY 104

Query:   213 KENSHMPG 236
             +E+ H  G
Sbjct:   105 REHFHGSG 112


 >gi|6063022|gb|AAF03096.1|AF162195_1  (AF162195) ribulose-1,5-bisphosphate
            carboxylase/oxygenase small subunit precursor [Lactuca sativa]
            Length = 174

Frame  3 hits (HSPs):                 ____________________                
                        __________________________________________________
Database sequence:     |              |             |             |       | 174
                       0             50           100           150

  Plus Strand HSPs:

 Score = 225 (79.2 bits), Expect = 8.6e-18, P = 8.6e-18
 Identities = 41/68 (60%), Positives = 51/68 (75%), Frame = +3

Query:    36 SNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFD-ELGCVR 212
             SNG +  CMK W PI  KK+ETLS LPPLSDE+++KEIDY ++  WIPCLEF+ E G V 
Sbjct:    50 SNGGRVQCMKVWPPIGLKKYETLSCLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVY 109

Query:   213 KENSHMPG 236
             +E+ H PG
Sbjct:   110 REHHHSPG 117


 >gi|167272|gb|AAA33037.1|  (M38317) ribulose 1,5-bisphosphate
            carboxylase/oxygenase small subunit [Mesembryanthemum crystallinum]
            Length = 183

Frame  3 hits (HSPs):                ___________________                  
                        __________________________________________________
Database sequence:     |             |             |            |         | 183
                       0            50           100          150

  Plus Strand HSPs:

 Score = 224 (78.9 bits), Expect = 1.1e-17, P = 1.1e-17
 Identities = 38/70 (54%), Positives = 50/70 (71%), Frame = +3

Query:    30 IVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFDEL-GC 206
             + SNG +  CM+ W P+  KKFETLSYLPPLS+ES+ KE+ Y L  GW+PCLEF+   G 
Sbjct:    49 VASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLIKEVQYLLNNGWVPCLEFEPTHGF 108

Query:   207 VRKENSHMPG 236
             V +E+ + PG
Sbjct:   109 VYREHGNTPG 118


 >gi|585788|sp|Q08183|RBS3_MESCR  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 3
            PRECURSOR (RUBISCO SMALL SUBUNIT 3) >gi|479722|pir||S35245
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain -
            common ice plant >gi|436487|gb|AAA03695.1| (L10215) rubisco small
            subunit [Mesembryanthemum crystallinum]
            Length = 183

Frame  3 hits (HSPs):                ___________________                  
Annotated Domains:           ____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |            |         | 183
                       0            50           100          150
__________________

Annotated Domains:
   DOMO                 DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 59..178
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 59..178
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 21..38
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 47..65
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 68..94
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 96..111
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 118..147
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 152..178
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      23..57
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      59..177
__________________


  Plus Strand HSPs:

 Score = 224 (78.9 bits), Expect = 1.1e-17, P = 1.1e-17
 Identities = 38/70 (54%), Positives = 50/70 (71%), Frame = +3

Query:    30 IVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFDEL-GC 206
             + SNG +  CM+ W P+  KKFETLSYLPPLS+ES+ KE+ Y L  GW+PCLEF+   G 
Sbjct:    49 VASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGF 108

Query:   207 VRKENSHMPG 236
             V +E+ + PG
Sbjct:   109 VYREHGNTPG 118


 >gi|3914608|sp|Q42915|RBS_MANES  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            PRECURSOR (RUBISCO SMALL SUBUNIT) >gi|168363|gb|AAA99429.1|
            (M96583) ribulose 1,5-bisphosphate carboxylase [Manihot esculenta]
            >gi|6272549|gb|AAF06099.1| (AF101231) ribulose 1,5-bisphosphate
            carboxylase small chain precursor [Manihot esculenta]
            Length = 182

Frame  3 hits (HSPs):                ____________________                 
Annotated Domains:           ____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |            |         | 182
                       0            50           100          150
__________________

Annotated Domains:
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 60..179
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 21..38
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 48..66
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 69..95
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 97..112
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 119..148
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 153..179
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      24..58
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      60..178
__________________


  Plus Strand HSPs:

 Score = 223 (78.5 bits), Expect = 1.4e-17, P = 1.4e-17
 Identities = 40/70 (57%), Positives = 51/70 (72%), Frame = +3

Query:    30 IVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFD-ELGC 206
             I SNG K  CMK W  +  KKFETLSYLPPL+ E +A E++Y L+ GWIPCLEF+ E G 
Sbjct:    50 ITSNGGKVQCMKVWPTLGMKKFETLSYLPPLTREQLASEVEYLLRSGWIPCLEFELEHGL 109

Query:   207 VRKENSHMPG 236
             V +E++ +PG
Sbjct:   110 VYREHARVPG 119


 >gi|3914585|sp|O22077|RBS_FAGCR  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            PRECURSOR (RUBISCO SMALL SUBUNIT) >gi|2588890|dbj|BAA23214.1|
            (AB006080) small subunit of ribulose-1,5-bisphosphate
            carboxylase/oxygenase [Fagus crenata]
            Length = 182

Frame  3 hits (HSPs):                ____________________                 
Annotated Domains:           ____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |            |         | 182
                       0            50           100          150
__________________

Annotated Domains:
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 60..179
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 21..38
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 48..66
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 69..95
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 97..112
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 119..148
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 153..179
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      24..58
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      60..178
__________________


  Plus Strand HSPs:

 Score = 223 (78.5 bits), Expect = 1.4e-17, P = 1.4e-17
 Identities = 41/70 (58%), Positives = 52/70 (74%), Frame = +3

Query:    30 IVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFD-ELGC 206
             + SNG +  CMK W P+  +KFETLSYLPPLS ES+AK+I+Y + KGWIPCLEF+ E   
Sbjct:    50 LASNGGRVQCMKVWPPLGLQKFETLSYLPPLSIESLAKQIEYLILKGWIPCLEFELEHPF 109

Query:   207 VRKENSHMPG 236
             V +EN+  PG
Sbjct:   110 VYRENNRSPG 119


 >gi|132102|sp|P10797|RBS3_ARATH  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            2B PRECURSOR (RUBISCO SMALL SUBUNIT 2B) >gi|68061|pir||RKMUB2
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain B2
            precursor - Arabidopsis thaliana >gi|16194|emb|CAA32701.1| (X14564)
            ribulose bisphosphate carboxylase [Arabidopsis thaliana]
            Length = 181

Frame  3 hits (HSPs):               ____________________                  
Annotated Domains:          _____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 181
                       0            50           100           150
__________________

Annotated Domains:
   DOMO                 DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 56..175
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 56..175
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 17..34
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 44..62
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 65..91
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 93..108
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 115..144
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 149..175
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      20..54
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      56..174
__________________


  Plus Strand HSPs:

 Score = 222 (78.1 bits), Expect = 1.8e-17, P = 1.8e-17
 Identities = 41/70 (58%), Positives = 50/70 (71%), Frame = +3

Query:    30 IVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFD-ELGC 206
             I SNG +  CMK W PI  KKFETLSYLP LSD  +AKE+DY L+  WIPC+EF+ E G 
Sbjct:    46 ITSNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGF 105

Query:   207 VRKENSHMPG 236
             V +E+ + PG
Sbjct:   106 VYREHGNTPG 115


 >gi|132110|sp|P10798|RBS4_ARATH  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            3B PRECURSOR (RUBISCO SMALL SUBUNIT 3B) >gi|68060|pir||RKMUB3
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain B3
            precursor - Arabidopsis thaliana >gi|16195|emb|CAA32702.1| (X14564)
            ribulose bisphosphate carboxylase [Arabidopsis thaliana]
            Length = 181

Frame  3 hits (HSPs):               ____________________                  
Annotated Domains:          _____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 181
                       0            50           100           150
__________________

Annotated Domains:
   DOMO                 DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 56..175
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 56..175
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 17..34
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 44..62
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 65..91
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 93..108
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 115..144
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 149..175
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      20..54
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      56..174
__________________


  Plus Strand HSPs:

 Score = 222 (78.1 bits), Expect = 1.8e-17, P = 1.8e-17
 Identities = 41/70 (58%), Positives = 50/70 (71%), Frame = +3

Query:    30 IVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFD-ELGC 206
             I SNG +  CMK W PI  KKFETLSYLP LSD  +AKE+DY L+  WIPC+EF+ E G 
Sbjct:    46 ITSNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGF 105

Query:   207 VRKENSHMPG 236
             V +E+ + PG
Sbjct:   106 VYREHGNTPG 115


 >gi|132086|sp|P00865|RBS1_SOYBN  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1
            PRECURSOR (RUBISCO SMALL SUBUNIT 1) >gi|68053|pir||RKSYS
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain
            precursor SRS1 - soybean >gi|18742|emb|CAA23736.1| (V00458)
            rubpcase [Glycine max]
            Length = 178

Frame  3 hits (HSPs):               ____________________                  
Annotated Domains:          _____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |             |        | 178
                       0            50           100           150
__________________

Annotated Domains:
   DOMO                 DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 56..175
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 56..175
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 18..35
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 44..62
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 65..91
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 93..108
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 115..144
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 149..175
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      21..54
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      56..174
__________________


  Plus Strand HSPs:

 Score = 222 (78.1 bits), Expect = 1.8e-17, P = 1.8e-17
 Identities = 40/69 (57%), Positives = 50/69 (72%), Frame = +3

Query:    30 IVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFD-ELGC 206
             I SNG +  CM+ W PI  KKFETLSYLP L D  +AKE++Y L+KGWIPCLEF+ E G 
Sbjct:    46 IASNGGRVQCMQVWPPIGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGF 105

Query:   207 VRKENSHMP 233
             V +E++  P
Sbjct:   106 VYREHNRSP 114


 >gi|19464|emb|CAA38346.1|  (X54464) ribulose  bisphosphate carboxylase [Larix
            laricina]
            Length = 171

Frame  3 hits (HSPs):             ______________________                  
                        __________________________________________________
Database sequence:     |              |             |              |      | 171
                       0             50           100            150

  Plus Strand HSPs:

 Score = 222 (78.1 bits), Expect = 1.8e-17, P = 1.8e-17
 Identities = 37/73 (50%), Positives = 52/73 (71%), Frame = +3

Query:    18 WKRKIVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFDE 197
             W+RK  SNG++  CM+ W P  NKK+ETLSYLP L+ E + KE++Y LK  W+PCLEF+E
Sbjct:    36 WERKTTSNGARVRCMQVWPPYANKKWETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEFEE 95

Query:   198 LGCVRKENSHMPG 236
              G +++   + PG
Sbjct:    96 DGEIKRVYGNSPG 108


 >gi|585789|sp|Q08184|RBS4_MESCR  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 4
            PRECURSOR (RUBISCO SMALL SUBUNIT 4) >gi|479721|pir||S35244
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain
            precursor - common ice plant >gi|167274|gb|AAA33038.1| (M38318)
            ribulose 1,5-bisphosphate carboxylase/oxygenase small subunit
            [Mesembryanthemum crystallinum] >gi|436488|gb|AAA03696.1| (L10215)
            rubisco small subunit [Mesembryanthemum crystallinum]
            Length = 183

Frame  3 hits (HSPs):                ___________________                  
Annotated Domains:           ____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |            |         | 183
                       0            50           100          150
__________________

Annotated Domains:
   DOMO                 DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 59..178
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 59..178
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 21..38
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 47..65
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 68..94
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 96..111
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 118..147
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 152..178
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      23..57
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      59..177
__________________


  Plus Strand HSPs:

 Score = 222 (78.1 bits), Expect = 1.8e-17, P = 1.8e-17
 Identities = 38/70 (54%), Positives = 50/70 (71%), Frame = +3

Query:    30 IVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFDEL-GC 206
             + SNG +  CM+ W P+  KKFETLSYLPPLS+ES+ KE+ Y L  GW+PCLEF+   G 
Sbjct:    49 VASNGGRVQCMQVWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGF 108

Query:   207 VRKENSHMPG 236
             V +E+ + PG
Sbjct:   109 VYREHGNTPG 118


 >gi|68052|pir||RKIXS  ribulose-bisphosphate carboxylase (EC 4.1.1.39) small
            chain precursor - common ice plant >gi|167268|gb|AAA33035.1|
            (M31640) ribulose-1-5-bisphosphate carboxylase [Mesembryanthemum
            crystallinum]
            Length = 182

Frame  3 hits (HSPs):               ____________________                  
Annotated Domains:      ________________                                  
                        __________________________________________________
Database sequence:     |             |             |            |         | 182
                       0            50           100          150
__________________

Annotated Domains:
   Entrez               domain: transit peptide (chloroplast)    1..57
__________________


  Plus Strand HSPs:

 Score = 221 (77.8 bits), Expect = 2.3e-17, P = 2.3e-17
 Identities = 37/70 (52%), Positives = 50/70 (71%), Frame = +3

Query:    30 IVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFDEL-GC 206
             + +NG +  CM+ W P+  KKFETLSYLPPLS+ES+ KE+ Y L  GW+PCLEF+   G 
Sbjct:    48 VATNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGF 107

Query:   207 VRKENSHMPG 236
             V +E+ + PG
Sbjct:   108 VYREHGNTPG 117


 >gi|585786|sp|P16032|RBS1_MESCR  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1
            PRECURSOR (RUBISCO SMALL SUBUNIT 1) >gi|479724|pir||S35247
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain -
            common ice plant >gi|304442|gb|AAA03693.1| (L10212) rubisco small
            subunit [Mesembryanthemum crystallinum] >gi|228311|prf||1802403A
            RuBisCO:SUBUNIT=small [Mesembryanthemum crystallinum]
            Length = 182

Frame  3 hits (HSPs):               ____________________                  
Annotated Domains:           ____________________________________________ 
                        __________________________________________________
Database sequence:     |             |             |            |         | 182
                       0            50           100          150
__________________

Annotated Domains:
   DOMO                 DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 58..177
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 58..177
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 20..37
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 46..64
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 67..93
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 95..110
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 117..146
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 151..177
   PRODOM               PD000564: RBS(27) RBS2(12) RBS1(12)      22..56
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      58..176
__________________


  Plus Strand HSPs:

 Score = 221 (77.8 bits), Expect = 2.3e-17, P = 2.3e-17
 Identities = 37/70 (52%), Positives = 50/70 (71%), Frame = +3

Query:    30 IVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFDEL-GC 206
             + +NG +  CM+ W P+  KKFETLSYLPPLS+ES+ KE+ Y L  GW+PCLEF+   G 
Sbjct:    48 VATNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGF 107

Query:   207 VRKENSHMPG 236
             V +E+ + PG
Sbjct:   108 VYREHGNTPG 117


 >gi|132150|sp|P10053|RBS_PINTH  RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN
            PRECURSOR (RUBISCO SMALL SUBUNIT) >gi|68051|pir||RKSZSJ
            ribulose-bisphosphate carboxylase (EC 4.1.1.39) small chain
            precursor - Japanese black pine >gi|20958|emb|CAA31774.1| (X13408)
            ribulose bisphosphate carboxylase preprotein [Pinus thunbergii]
            Length = 171

Frame  3 hits (HSPs):             ______________________                  
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |              |             |              |      | 171
                       0             50           100            150
__________________

Annotated Domains:
   DOMO                 DM00075: RIBULOSE-BISPHOSPHATECARBOXYLAS 52..170
   PFAM                 RuBisCO_small: Ribulose bisphosphate car 52..170
   PRINTS               RUBISCOSMALL1: RUBISCO small subunit mot 9..26
   PRINTS               RUBISCOSMALL2: RUBISCO small subunit mot 40..58
   PRINTS               RUBISCOSMALL3: RUBISCO small subunit mot 61..87
   PRINTS               RUBISCOSMALL4: RUBISCO small subunit mot 89..104
   PRINTS               RUBISCOSMALL5: RUBISCO small subunit mot 110..139
   PRINTS               RUBISCOSMALL6: RUBISCO small subunit mot 144..170
   PRODOM               PD154032: RBS(2)                         1..50
   PRODOM               PD000290: RBS(65) RBS1(21) RBS2(17)      52..169
__________________


  Plus Strand HSPs:

 Score = 220 (77.4 bits), Expect = 2.9e-17, P = 2.9e-17
 Identities = 35/73 (47%), Positives = 50/73 (68%), Frame = +3

Query:    18 WKRKIVSNGSKTYCMKTWNPINNKKFETLSYLPPLSDESIAKEIDYTLKKGWIPCLEFDE 197
             W++K  SNG +  CM+ W P  N KFETLSYLP L++E + KE++Y L+  W+PCLEFD 
Sbjct:    38 WEQKTTSNGGRVRCMQVWPPFGNPKFETLSYLPTLTEEQLVKEVEYLLRNKWVPCLEFDL 97

Query:   198 LGCVRKENSHMPG 236
              G + ++ +  PG
Sbjct:    98 EGSISRKYNRSPG 110


WARNING:  HSPs involving 304 database sequences were not reported due to the
          limiting value of parameter B = 50.


Parameters:
  filter=none
  matrix=BLOSUM62
  V=50
  B=50
  E=10
  gi
  H=1
  sort_by_pvalue
  echofilter

  ctxfactor=5.96

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   Std.    0   BLOSUM62                                 0.318   0.135   0.401  
   +3      0   BLOSUM62        0.315   0.135   0.437    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +2      0   BLOSUM62        0.318   0.135   0.401    0.379   0.174   0.757  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +1      0   BLOSUM62        0.318   0.135   0.401    0.340   0.148   0.501  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -1      0   BLOSUM62        0.318   0.135   0.401    0.342   0.144   0.534  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -2      0   BLOSUM62        0.318   0.135   0.401    0.341   0.153   0.543  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -3      0   BLOSUM62        0.318   0.135   0.401    0.347   0.155   0.528  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +3      0       78        78       10.  57 3  13 23  0.12    31
                                                    27  0.11    32
   +2      0       78        77       10.  57 3  12 22  0.10    31
                                                    27  0.11    32
   +1      0       79        78       10.  57 3  12 22  0.10    31
                                                    27  0.11    32
   -1      0       79        78       10.  57 3  12 22  0.10    31
                                                    27  0.11    32
   -2      0       78        78       10.  57 3  12 22  0.10    31
                                                    27  0.11    32
   -3      0       78        78       10.  57 3  12 22  0.10    31
                                                    27  0.11    32


Statistics:

  Database:  /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
    Title:  nr
    Release date:  unknown
    Posted date:  8:50 PM CDT May 27, 2000
    Format:  BLAST
  # of letters in database:  158,518,215
  # of sequences in database:  505,245
  # of database sequences satisfying E:  354
  No. of states in DFA:  582 (57 KB)
  Total size of DFA:  133 KB (192 KB)
  Time to generate neighborhood:  0.00u 0.02s 0.02t  Elapsed: 00:00:00
  No. of threads or processors used:  4
  Search cpu time:  104.12u 1.15s 105.27t  Elapsed: 00:00:47
  Total cpu time:  104.18u 1.21s 105.39t  Elapsed: 00:00:47
  Start:  Wed Feb 14 17:28:05 2001   End:  Wed Feb 14 17:28:52 2001

WARNINGS ISSUED:  2


Annotated Domains Database:   March 14, 2000 

Release Date:  March 14, 2000