Vibrio fischeri ES114 chromosome I

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174278-174377 (1-100) 174378-174477 (101-200) 174478-174577 (201-300) 174578-174677 (301-400) 174678-174777 (401-500)
174778-174877 (501-600) 174878-174977 (601-700) 174978-175077 (701-800) 175078-175177 (801-900) [175178-175277 (901-1000)]
175278-175377 (1001-1100) 175378-175477 (1101-1200) 175478-175577 (1201-1300) 175578-175677 (1301-1400) 175678-175777 (1401-1500)
175778-175877 (1501-1600) 175878-175977 (1601-1700) 175978-176077 (1701-1800) 176078-176177 (1801-1900) 176178-176277 (1901-2000)
176278-176377 (2001-2100) 176378-176477 (2101-2200) 176478-176577 (2201-2300) 176578-176677 (2301-2400) 176678-176777 (2401-2500)
176778-176852 (2501-2575)


Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
175178 hypothetical VF0901 transport ATP-binding protein CydD genbank 59711508 YP_204284.1 590 992362 994134
175179 hypothetical VF0902 thioredoxin reductase genbank 59711509 YP_204285.1 321 994287 995252
175180 hypothetical VF0903 alanine dehydrogenase genbank 59711510 YP_204286.1 372 995400 996518
175181 hypothetical VF0904 leucine-responsive regulatory protein genbank 59711511 YP_204287.1 163 996675 997166
175182 hypothetical VF0905 cell division protein FtsK genbank 59711512 YP_204288.1 1144 997389 1000823
175183 hypothetical VF0906 outer-membrane lipoproteins carrier protein genbank 59711513 YP_204289.1 198 1000849 1001445
175184 hypothetical VF0907 ATPase, AAA family genbank 59711514 YP_204290.1 448 1001479 1002825
175185 hypothetical VF0908 seryl-tRNA synthetase
catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
genbank 59711515 YP_204291.1 435 1002947 1004254
175186 hypothetical VF0909 thioredoxin genbank 59711516 YP_204292.1 144 1004343 1004777
175187 hypothetical VF0910 hypothetical protein genbank 59711517 YP_204293.1 107 1004949 1005272
175188 hypothetical VF0911 inosine-guanosine kinase genbank 59711518 YP_204294.1 434 1005455 1006759
175189 hypothetical VF0912 aldose 1-epimerase-like protein genbank 59711519 YP_204295.1 291 1006852 1007727
175190 hypothetical VF0913 glyceraldehyde-3-phosphate dehydrogenase
catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate
genbank 59711520 YP_204296.1 331 1007922 1008917
175191 hypothetical VF0914 methionine sulfoxide reductase B
this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; a fusion protein of this enzyme with MsrA and thioredoxin provides protection against oxidative stress in Neisseria gonorrhoeae
genbank 59711521 YP_204297.1 135 1009254 1009661
175192 hypothetical VF0915 hypothetical protein genbank 59711522 YP_204298.1 280 1009720 1010562
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
175193 hypothetical VF0916 general negative regulator of transcription subunit 1 genbank 59711523 YP_204299.1 95 1010683 1010970
175194 hypothetical VF0917 hypothetical protein genbank 59711524 YP_204300.1 286 1011288 1012148
175195 hypothetical VF0918 acetaldehyde dehydrogenase [acetylating]
alcohol dehydrogenase
genbank 59711525 YP_204301.1 833 1012905 1015406
175196 hypothetical VF0919 short chain dehydrogenase genbank 59711526 YP_204302.1 223 1015595 1016266
175197 hypothetical VF0920 SSU ribosomal protein S4P genbank 59711527 YP_204303.1 168 1016489 1016995
175198 hypothetical VF0921 superoxide dismutase genbank 59711528 YP_204304.1 194 1017198 1017782
175199 hypothetical VF0922 glutaredoxin genbank 59711529 YP_204305.1 111 1018017 1018352
175200 hypothetical VF0923 hypothetical protein genbank 59711530 YP_204306.1 439 1018401 1019720
175201 hypothetical VF0924 transport protein genbank 59711531 YP_204307.1 442 1019890 1021218
175202 hypothetical VF0925 ribonuclease T
Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A)
genbank 59711532 YP_204308.1 222 1021265 1021933
175203 hypothetical VF0926 sodium-type flagellar protein MotY precursor genbank 59711533 YP_204309.1 292 1022120 1022998
175204 hypothetical VF0927 hypothetical protein genbank 59711534 YP_204310.1 144 1023050 1023484
175205 hypothetical VF0928 lactoylglutathione lyase genbank 59711535 YP_204311.1 138 1023626 1024042
175206 hypothetical VF0929 endonuclease III genbank 59711536 YP_204312.1 211 1024056 1024691
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
175207 hypothetical VF0930 NADH-ubiquinone oxidoreductase
Provides the input to the respiratory chain from the NAD-linked dehydrogenases of the citric acid cycle. The complex couples the oxidation of NADH and the reduction of ubiquinone, to the generation of a proton gradient which is then used for ATP synthesis
genbank 59711537 YP_204313.1 227 1024762 1025445
175208 hypothetical VF0931 electron transport complex protein RnfG
part of membrane-bound complex hought to be involved in electron transport to nitrogen
genbank 59711538 YP_204314.1 210 1025445 1026077
175209 hypothetical VF0932 electron transport complex protein RnfD genbank 59711539 YP_204315.1 331 1026082 1027077
175210 hypothetical VF0933 electron transport complex protein RnfC
part of membrane-bound complexthought to be involved in electrontransport to nitrogen
genbank 59711540 YP_204316.1 827 1027140 1029623
175211 hypothetical VF0934 electron transport complex protein RnfB
part of membrane-bound complex hought to be involved in electron transport to nitrogen
genbank 59711541 YP_204317.1 194 1029627 1030211
175212 hypothetical VF0935 Na(+)-translocating NADH-quinone reductase subunit E genbank 59711542 YP_204318.1 193 1030214 1030795
175213 hypothetical VF0936 excinuclease ABC subunit B
The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion
genbank 59711543 YP_204319.1 676 1031618 1033648
175214 hypothetical VF0937 repressor protein LuxO genbank 59711544 YP_204320.1 476 1033942 1035372
175215 hypothetical VF0938 hypothetical protein genbank 59711545 YP_204321.1 118 1035362 1035718
175216 hypothetical VF0939 hypothetical cytosolic protein genbank 59711546 YP_204322.1 292 1035707 1036585
175217 hypothetical VF0940 molybdenum cofactor biosynthesis protein A
Together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z
genbank 59711547 YP_204323.1 329 1036968 1037957
175218 moaC hypothetical VF0941 molybdenum cofactor biosynthesis protein C
MoaC; along with MoaA is involved in conversion of a guanosine derivative into molybdopterin precursor Z; involved in molybdenum cofactor biosynthesis
genbank 59711548 YP_204324.1 159 1037970 1038449
175219 hypothetical VF0942 molybdopterin converting factor, small subunit genbank 59711549 YP_204325.1 81 1038446 1038691
175220 hypothetical VF0943 molybdopterin converting factor, large subunit genbank 59711550 YP_204326.1 148 1038693 1039139
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
175221 hypothetical VF0944 glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) genbank 59711551 YP_204327.1 321 1039245 1040210
175222 hypothetical VF0945 hypothetical protein genbank 59711552 YP_204328.1 502 1040214 1041722
175223 hypothetical VF0946 ATP-dependent Zn protease genbank 59711553 YP_204329.1 256 1041831 1042601
175224 hypothetical VF0947 methyltransferase genbank 59711554 YP_204330.1 324 1042681 1043655
175225 hypothetical VF0948 methyltransferase genbank 59711555 YP_204331.1 242 1043692 1044420
175226 hypothetical VF0949 aspartyl-tRNA synthetase
Catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
genbank 59711556 YP_204332.1 591 1044807 1046582
175227 ruvC hypothetical VF0950 Holliday junction resolvase
Cleaves the cruciform structure in supercoiled DNA by nicking strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms
genbank 59711557 YP_204333.1 173 1046735 1047256
175228 ruvA hypothetical VF0951 Holliday junction DNA helicase motor protein
plays an essential role in ATP-dependent branch migration of the Holliday junction
genbank 59711558 YP_204334.1 207 1047362 1047985
175229 hypothetical VF0952 Holliday junction DNA helicase RuvB
promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA durin gbranch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms
genbank 59711559 YP_204335.1 337 1048013 1049026
175230 hypothetical VF0953 cytochrome d ubiquinol oxidase subunit I genbank 59711560 YP_204336.1 529 1049405 1050994
175231 hypothetical VF0954 cytochrome d ubiquinol oxidase subunit II genbank 59711561 YP_204337.1 378 1051012 1052148
175232 hypothetical VF0955 protein YbgT genbank 59711562 YP_204338.1 35 1052161 1052268
175233 hypothetical VF0956 hypothetical protein genbank 59711563 YP_204339.1 100 1052261 1052563
175234 hypothetical VF0957 short chain acyl-CoA thioesterase YbgC genbank 59711564 YP_204340.1 136 1052741 1053151
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
175235 hypothetical VF0958 TolQ protein genbank 59711565 YP_204341.1 228 1053141 1053827
175236 hypothetical VF0959 TolR protein genbank 59711566 YP_204342.1 148 1053827 1054273
175237 hypothetical VF0960 TolA protein genbank 59711567 YP_204343.1 127 1054290 1054673
175238 hypothetical VF0961 TolA protein genbank 59711568 YP_204344.1 346 1055381 1056421
175239 tolB hypothetical VF0962 translocation protein TolB precursor
forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA
genbank 59711569 YP_204345.1 450 1056432 1057784
175240 hypothetical VF0963 peptidoglycan-associated lipoprotein genbank 59711570 YP_204346.1 188 1057820 1058386
175241 hypothetical VF0964 Tol system periplasmic component YbgF genbank 59711571 YP_204347.1 252 1058412 1059170
175242 hypothetical VF0965 quinolinate synthetase
3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate
genbank 59711572 YP_204348.1 349 1059302 1060351
175243 hypothetical VF0966 hypothetical protein genbank 59711573 YP_204349.1 196 1060425 1061015
175244 hypothetical VF0967 hypothetical protein genbank 59711574 YP_204350.1 150 1061326 1061778
175245 hypothetical VF0968 beta-lactamase family protein genbank 59711575 YP_204351.1 351 1062701 1063756
175246 hypothetical VF0969 hypothetical protein genbank 59711576 YP_204352.1 128 1064211 1064597
175247 hypothetical VF0970 C factor cell-cell signaling protein genbank 59711577 YP_204353.1 236 1064629 1065339
175248 hypothetical VF0971 GTP-binding protein HflX genbank 59711578 YP_204354.1 452 1065545 1066903
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
175249 hypothetical VF0972 RNA polymerase sigma-70 factor
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
genbank 59711579 YP_204355.1 181 1067080 1067625
175250 hypothetical VF0973 glutamate--cysteine ligase genbank 59711580 YP_204356.1 532 1067782 1069380
175251 hypothetical VF0974 multidrug resistance ABC transporter ATP-binding and permease protein genbank 59711581 YP_204357.1 599 1069385 1071184
175252 hypothetical VF0975 multidrug resistance ABC transporter ATP-binding and permease protein genbank 59711582 YP_204358.1 605 1071177 1072994
175253 hypothetical VF0976 glutathione synthetase genbank 59711583 YP_204359.1 486 1073019 1074479
175254 hypothetical VF0977 acetyltransferase genbank 59711584 YP_204360.1 140 1074909 1075331
175255 hypothetical VF0978 quinone oxidoreductase genbank 59711585 YP_204361.1 326 1075353 1076333
175256 hypothetical VF0979 hypothetical protein genbank 59711586 YP_204362.1 105 1076465 1076782
175257 hypothetical VF0980 transporter, MFS superfamily genbank 59711587 YP_204363.1 386 1076846 1078006
175258 hypothetical VF0981 alternative oxidase 2 precursor genbank 59711588 YP_204364.1 198 1078285 1078881
175259 hypothetical VF0982 transporter, drug/metabolite exporter family genbank 59711589 YP_204365.1 285 1078931 1079788
175260 hypothetical VF0983 hypothetical protein genbank 59711590 YP_204366.1 120 1079909 1080271
175261 hypothetical VF0984 hypothetical protein genbank 59711591 YP_204367.1 129 1080299 1080688
175262 hypothetical VF0985 sensory box/GGDEF family protein genbank 59711592 YP_204368.1 827 1080986 1083469
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
175263 hypothetical VF0986 chitodextrinase precursor genbank 59711593 YP_204369.1 1053 1083554 1086715
175264 hypothetical VF0987 methyl-accepting chemotaxis protein genbank 59711594 YP_204370.1 650 1087244 1089196
175265 hypothetical VF0988 hypothetical protein genbank 59711595 YP_204371.1 249 1089670 1090419
175266 hypothetical VF0989 sensory box/GGDEF family protein genbank 59711596 YP_204372.1 631 1090606 1092501
175267 hypothetical VF0990 serine/threonine protein kinase genbank 59711597 YP_204373.1 319 1092502 1093461
175268 hypothetical VF0991 protein phosphatase 2C genbank 59711598 YP_204374.1 223 1093458 1094129
175269 hypothetical VF0992 IcmF protein genbank 59711599 YP_204375.1 1024 1094126 1097200
175270 hypothetical VF0993 IcmF-related protein genbank 59711600 YP_204376.1 452 1097627 1098985
175271 hypothetical VF0994 hypothetical membrane associated protein genbank 59711601 YP_204377.1 277 1098996 1099829
175272 hypothetical VF0995 hypothetical protein genbank 59711602 YP_204378.1 440 1099831 1101153
175273 hypothetical VF0996 probable lipoprotein [imported] genbank 59711603 YP_204379.1 163 1101165 1101656
175274 hypothetical VF0997 phospho-specific protein-protein interaction motif FHA genbank 59711604 YP_204380.1 436 1101693 1103003
175275 hypothetical VF0998 transcriptional regulator genbank 59711605 YP_204381.1 522 1103138 1104706
175276 hypothetical VF0999 ATP-dependent protease subunit genbank 59711606 YP_204382.1 860 1104712 1107294
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
175277 hypothetical VF1000 quinoprotein dehydrogenase genbank 59711607 YP_204383.1 346 1107291 1108331


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