NCBI

NLM

PubMed Nucleotide Protein Genome Structure PopSet Taxonomy OMIM Books SNP
Search for SNP on NCBI Reference Assembly
Spacer gif
BUILD 129
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Report in Submission Format
SNP:  Handle|local_snp_id:   SI_MHC_SNP | AL669914.2_42186_TC
  NCBI Assay Id(ss#):    ss12682572
  Reference SNP Id(rs#): rs259943

Batch Detail:
Submitter Handle:           SI_MHC_SNP
Submitter Batch ID:         2005_03_29
Entry Date:                 Mar 29, 2005
Molecular type:             Genomic
No. of Chromosomes sampled: 4
Synonym defined:            
Organism:                   Homo sapiens
Population:                 Not submitted
Submitter Method ID:        MHC_XM20030904
Citation:
   1. Complete MHC Haplotype Sequencing for Common Disease Gene Mapping

   View citation details:[1] 

  SubSNP Detail:
  NCBI Assay ID:       ss12682572
  Submitter SNP ID:    AL669914.2_42186_TC
  Synonyms:            
  LOCUSID:             Not submitted
  Submitter STS ID:    Not submitted
  STS Accession:       Not submitted
  GenBanK Accession:   AL669914.2 
  Comment:
     sequence: CR759960.3
     position: 44705
     quality: [40]
     sequence: CR388205.7
     position: 74495
     quality: [40]
     sequence: AL671859.3
     position: 27134
     quality: [40]

  Gene Name:           
  Length:              801
  Flanking Sequence Information:

  5' Assay:   TATGCATTGC TTTAAAGAAA TACATGAAAC TGGATAATTT ATAAAGAAAA GAGGTTTAAT
              TGGCTAAAGG TTCTGCAGGC TATACAGGTT TCTGCTCCTG GGGAGGCCTC AGGAAACACA
              ATAATGGTGG AAGGTGAATG GGAAGTTAGT ACATCTTACA TGGCTGAAGC AGGAAGAAGA
              GAGAAGGGGG AGGTGGCACA CATGTTTAAA AAGCCAAATC TCACTACAAA ATCTCAACGA
              AAATTCACTA TCATGAGAAC AGCAAGGGGG AAGTCCACCC CCATGACCCA ATCACCTCCC
              ACCACACCCT TCCTCCAACA CTGGGGACTA CAGTTTGACA TAAGATTTGG GCGGGTACAC
              AAATCCAAAC CACATCAATA TTTAATGGTG AAAGACTGGT
  Observed:   T/C
  3' Assay:   GCTTTCCTCC TAAGATCAGC AATTAAAACA AGAATATCCA CTCCCACTAT GTCTATTCAA
              CATTACCAAA GGTTCTAGCT AAGATAATTA GACAAGAAAA AAGCAATAAA GTATATTCAG
              ATTGGAAAGA AAGAAGTAAA ACTATATTCA CAGATGACAT GATCTTTTAT ATAAAAAAAT
              GCTAAATGAT CCATTAAAGA GCTATTAGAA CTACTAACTT CAGCAAGGAT AAAGGATATA
              ACACCAGTAT ACAAAAATCA ATTGTATTTC TAAACCCTTG CAATGACAAA TCCAGAAATG
              AAATTAAGAA AACAATTCCA TTTGTAATAG CTTTAAAGGA ACAAAATACT TAGAAGCAAA
              TTTAACAAAA GAAGTGCAAC TCAAACATCA ATGAAAGAAA

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION:
FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
HAPLOTYPE:Submission | Specifications | Sample HapSet | Sample Individual
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement

Revised: May 25, 2006 1:38 PM .