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NLM

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Search for SNP on NCBI Reference Assembly
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BUILD 129
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To display 3D structure, download Cn3D v4.0
1 variation mapped to protein NP_003784
PDB Blast Result: View Alignment
Protein:
gi|6042196|1-1 cathepsin F [Homo sapiens]|
Structure Neighbor:
gi|34811401|1-1 Chain A, Crystal Structure Of Human Cathepsin F|


dbSNP

SnpID Position
protein
Amino
Acid
Amino
Acid
Amino
Acid

Position
neighbor
Cn3D
rs572846467ARGARGARG197

Cn3D: Synonymous Nonsynonymous
Additional Links:  MMDB Database CDD Database DART Database

Position protein
Contig reference residue from the translated XP_ protein. Position is given on the protein sequence.
Amino Acid
Residue on the contig reference, variant residue specified by one or more alleles for a variation record in dbSNP (synonymous or nonsynonymous), or the corresponding residue on the neighbored protein with structure information, respectively.
Position neighbor
Position of the variant amino acid on the protein sequence with structure information. The alignment between the contig protein and its neighbor structure can be viewed in Cn3D or by selecting the 'view alignment' button above.
Cn3D
Check box to include the selected variation in the set of highlighted positions in the Cn3D export file.

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Revised: December 30, 2008 3:12 PM .