R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|7384996|gb|AAF61634.1| (AF153422) lacZ [Cloning vector pTG8]
Length = 197
Frame -2 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | 197
0 50 100 150
Minus Strand HSPs:
Score = 139 (48.9 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 29/53 (54%), Positives = 35/53 (66%), Frame = -2
Query: 174 PSSFIGTLKLGREERTMEPSL*T*RTPRQSLVPNSCSPGDPLVLERPPPRWSS 16
PS+ G L L + ++ P + T SL+ NSCSPGDPLVLERPPPRWSS
Sbjct: 6 PSAQAGQLTLTKGNKSWVPGPPSRSTVSISLISNSCSPGDPLVLERPPPRWSS 58
>gi|560554|gb|AAB31222.1| (S71728) truncated protein [Saccharomyces cerevisiae]
Length = 33
Frame -2 hits (HSPs): ____________________________________
__________________________________________________
Database sequence: | | | 33
0 20
Minus Strand HSPs:
Score = 126 (44.4 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 22/24 (91%), Positives = 23/24 (95%), Frame = -2
Query: 87 SLVPNSCSPGDPLVLERPPPRWSS 16
SL+ NSCSPGDPLVLERPPPRWSS
Sbjct: 7 SLISNSCSPGDPLVLERPPPRWSS 30
>gi|560556|gb|AAB31223.1| (S71730) influenza virus hemagglutinin 5' epitope
tag=fusion protein {N-terminal, frame 1} [Saccharomyces
cerevisiae=yeast, YCpIF15,16,17 cloning vector, Peptide Plasmid
Synthetic Partial, 45 aa]
Length = 45
Frame -2 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | 45
0 20 40
Minus Strand HSPs:
Score = 126 (44.4 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 22/24 (91%), Positives = 23/24 (95%), Frame = -2
Query: 87 SLVPNSCSPGDPLVLERPPPRWSS 16
SL+ NSCSPGDPLVLERPPPRWSS
Sbjct: 19 SLISNSCSPGDPLVLERPPPRWSS 42
>gi|773414|gb|AAB05989.1| (U23751) beta galactosidase [Cloning vector
pBBR1MCS-2] >gi|833819|gb|AAB06689.1| (U25059) LacZ alpha peptide
[Cloning vector pBBR1MCS-3] >gi|833823|gb|AAB06692.1| (U25060) LacZ
alpha peptide [Cloning vector pBBR1MCS-4] >gi|833827|gb|AAB06695.1|
(U25061) LacZ alpha peptide [Cloning vector pBBR1MCS-5]
Length = 121
Frame -2 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | 121
0 50 100
Minus Strand HSPs:
Score = 126 (44.4 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 22/24 (91%), Positives = 23/24 (95%), Frame = -2
Query: 87 SLVPNSCSPGDPLVLERPPPRWSS 16
SL+ NSCSPGDPLVLERPPPRWSS
Sbjct: 32 SLISNSCSPGDPLVLERPPPRWSS 55
>gi|9294786|gb|AAF86670.1|AF178449_1 (AF178449) beta-galactosidase alpha
peptide [Integration vector pCD11PKS]
>gi|9294795|gb|AAF86676.1|AF178452_1 (AF178452) beta-galactosidase
alpha peptide [Integration vector pCD13PKS]
Length = 127
Frame -2 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | 127
0 50 100
Minus Strand HSPs:
Score = 126 (44.4 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 22/24 (91%), Positives = 23/24 (95%), Frame = -2
Query: 87 SLVPNSCSPGDPLVLERPPPRWSS 16
SL+ NSCSPGDPLVLERPPPRWSS
Sbjct: 32 SLISNSCSPGDPLVLERPPPRWSS 55
>gi|11993889|gb|AAG42155.1| (AY012159) virion-associated nuclear-shuttling
protein [Mus musculus]
Length = 576
Frame 2 hits (HSPs): ___ __
__________________________________________________
Database sequence: | | | | | 576
0 150 300 450
Plus Strand HSPs:
Score = 122 (42.9 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 23/23 (100%), Positives = 23/23 (100%), Frame = +2
Query: 17 ELHRGGGRSRTSGSPGLQEFGTR 85
ELHRGGGRSRTSGSPGLQEFGTR
Sbjct: 6 ELHRGGGRSRTSGSPGLQEFGTR 28
Score = 30 (10.6 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 6/14 (42%), Positives = 7/14 (50%), Frame = +2
Query: 104 HVYNDGSIVRSSRP 145
H Y D S +R P
Sbjct: 505 HAYKDWSQIRYPPP 518
>gi|4028979|emb|CAA06470.1| (AJ005323) glutamate permease [synthetic construct]
>gi|4028985|emb|CAA06473.1| (AJ005326) glutamate permease
[synthetic construct] >gi|4028991|emb|CAA06476.1| (AJ005329)
glutamate permease [synthetic construct]
Length = 459
Frame -2 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | | 459
0 150 300 450
Minus Strand HSPs:
Score = 126 (44.4 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 22/24 (91%), Positives = 23/24 (95%), Frame = -2
Query: 87 SLVPNSCSPGDPLVLERPPPRWSS 16
SL+ NSCSPGDPLVLERPPPRWSS
Sbjct: 205 SLISNSCSPGDPLVLERPPPRWSS 228
>gi|7489187|pir||T02229 protein BYJ15 - common tobacco (fragment)
>gi|2280518|dbj|BAA21615.1| (AB005878) BYJ15 [Nicotiana tabacum]
Length = 172
Frame 2 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | 172
0 50 100 150
Plus Strand HSPs:
Score = 117 (41.2 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 22/22 (100%), Positives = 22/22 (100%), Frame = +2
Query: 17 ELHRGGGRSRTSGSPGLQEFGT 82
ELHRGGGRSRTSGSPGLQEFGT
Sbjct: 2 ELHRGGGRSRTSGSPGLQEFGT 23
>gi|10281475|gb|AAG15510.1|U56995_1 (U56995) mutant green fluorescent protein
[Cloning vector pGreenscript A]
Length = 302
Frame 3 hits (HSPs): _____
Frame 2 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | || 302
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 101 (35.6 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 20/26 (76%), Positives = 22/26 (84%), Frame = +3
Query: 18 SSTAVAAALELVDPPGCRNSAREIVV 95
SSTAVAAALELVDPPGCRNS + +
Sbjct: 20 SSTAVAAALELVDPPGCRNSISSLSI 45
Score = 38 (13.4 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 8/24 (33%), Positives = 11/24 (45%), Frame = +2
Query: 98 VLHVYNDGSIVRSSRPSFNVPIND 169
+ H DGS+ + N PI D
Sbjct: 231 IRHNIKDGSVQLADHYQQNTPIGD 254
>gi|7489188|pir||T02232 protein BYJ6 - common tobacco (fragment)
>gi|2280520|dbj|BAA21616.1| (AB005879) BYJ6 [Nicotiana tabacum]
Length = 177
Frame 2 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | 177
0 50 100 150
Plus Strand HSPs:
Score = 113 (39.8 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 23 HRGGGRSRTSGSPGLQEFGTR 85
HRGGGRSRTSGSPGLQEFGTR
Sbjct: 5 HRGGGRSRTSGSPGLQEFGTR 25
>gi|762925|emb|CAA59990.1| (X85998) elastin like protein [Drosophila
melanogaster]
Length = 110
Frame 3 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | | | 110
0 20 40 60 80 100
Plus Strand HSPs:
Score = 111 (39.1 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 22/23 (95%), Positives = 23/23 (100%), Frame = +3
Query: 18 SSTAVAAALELVDPPGCRNSARE 86
SSTAVAAALELVDPPGCRNSAR+
Sbjct: 2 SSTAVAAALELVDPPGCRNSARD 24
>gi|3402817|emb|CAA07704.1| (AJ007829) lacZ' [Cloning vector pGreen]
Length = 120
Frame 3 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | 120
0 50 100
Plus Strand HSPs:
Score = 101 (35.6 bits), Expect = 0.00015, P = 0.00015
Identities = 20/26 (76%), Positives = 22/26 (84%), Frame = +3
Query: 18 SSTAVAAALELVDPPGCRNSAREIVV 95
SSTAVAAALELVDPPGCRNS + +
Sbjct: 20 SSTAVAAALELVDPPGCRNSISSLSI 45
>gi|9294789|gb|AAF86672.1|AF178450_1 (AF178450) beta-galactosidase alpha
peptide [Integration vector pCD11PSK]
>gi|9294798|gb|AAF86678.1|AF178453_1 (AF178453) beta-galactosidase
alpha peptide [Integration vector pCD13PSK]
Length = 127
Frame 3 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | 127
0 50 100
Plus Strand HSPs:
Score = 101 (35.6 bits), Expect = 0.00015, P = 0.00015
Identities = 20/26 (76%), Positives = 22/26 (84%), Frame = +3
Query: 18 SSTAVAAALELVDPPGCRNSAREIVV 95
SSTAVAAALELVDPPGCRNS + +
Sbjct: 20 SSTAVAAALELVDPPGCRNSISSLSI 45
>gi|560560|gb|AAB31225.1| (S71745) influenza virus hemagglutinin 5' epitope
tag=fusion protein {N-terminal, frame 3} [Saccharomyces
cerevisiae=yeast, YCpIF15,16,17 cloning vector, Peptide Plasmid
Synthetic Partial, 56 aa]
Length = 56
Frame -1 hits (HSPs): __________________________________________
__________________________________________________
Database sequence: | | | | 56
0 20 40
Minus Strand HSPs:
Score = 97 (34.1 bits), Expect = 0.00039, P = 0.00039
Identities = 26/46 (56%), Positives = 29/46 (63%), Frame = -1
Query: 130 YYGTVVIDMKNATTISRA-----EFLQPGGSTSSRAAATAVELLXA 8
Y + V + A I R+ EFLQPGGSTSSRAAATAVEL A
Sbjct: 11 YASSTVSGIPRAAGIHRSDKLDIEFLQPGGSTSSRAAATAVELQFA 56
>gi|560558|gb|AAB31224.1| (S71742) influenza virus hemagglutinin 5' epitope
tag=fusion protein {N-terminal} [Saccharomyces cerevisiae=yeast,
YCpIF15,16,17 cloning vector, Peptide Plasmid Synthetic Partial, 50
aa]
Length = 50
Frame -1 hits (HSPs): _______________________
__________________________________________________
Database sequence: | | | | 50
0 20 40
Minus Strand HSPs:
Score = 96 (33.8 bits), Expect = 0.00050, P = 0.00050
Identities = 21/23 (91%), Positives = 21/23 (91%), Frame = -1
Query: 76 EFLQPGGSTSSRAAATAVELLXA 8
EFLQPGGSTSSRAAATAVEL A
Sbjct: 28 EFLQPGGSTSSRAAATAVELQFA 50
>gi|1684629|emb|CAA70550.1| (Y09374) lacZ-PhoC [synthetic construct]
Length = 316
Frame 3 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | | | 316
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 101 (35.6 bits), Expect = 0.00079, P = 0.00079
Identities = 20/26 (76%), Positives = 22/26 (84%), Frame = +3
Query: 18 SSTAVAAALELVDPPGCRNSAREIVV 95
SSTAVAAALELVDPPGCRNS + +
Sbjct: 20 SSTAVAAALELVDPPGCRNSISSLSI 45
>gi|4028981|emb|CAA06471.1| (AJ005324) glutamate permease [synthetic construct]
>gi|4028987|emb|CAA06474.1| (AJ005327) glutamate permease
[synthetic construct] >gi|4028993|emb|CAA06477.1| (AJ005330)
glutamate permease [synthetic construct]
Length = 459
Frame 3 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | 459
0 150 300 450
Plus Strand HSPs:
Score = 101 (35.6 bits), Expect = 0.0014, P = 0.0014
Identities = 20/26 (76%), Positives = 22/26 (84%), Frame = +3
Query: 18 SSTAVAAALELVDPPGCRNSAREIVV 95
SSTAVAAALELVDPPGCRNS + +
Sbjct: 193 SSTAVAAALELVDPPGCRNSISSLSI 218
>gi|2108238|gb|AAB63364.1| (U97360) HFLK homolog [Treponema pallidum]
Length = 220
Frame -2 hits (HSPs): ___ _____
__________________________________________________
Database sequence: | | | | | | 220
0 50 100 150 200
Minus Strand HSPs:
Score = 67 (23.6 bits), Expect = 0.016, Sum P(2) = 0.016
Identities = 13/19 (68%), Positives = 14/19 (73%), Frame = -2
Query: 84 LVPNSCSPGDPLVLERPPP 28
L +SC PG PLVLERP P
Sbjct: 195 LQKDSCRPGGPLVLERPHP 213
Score = 36 (12.7 bits), Expect = 0.016, Sum P(2) = 0.016
Identities = 6/13 (46%), Positives = 9/13 (69%), Frame = -2
Query: 150 KLGREERTMEPSL 112
+ G+ RT+EP L
Sbjct: 46 RFGKYHRTLEPGL 58
>gi|2231161|gb|AAB61958.1| (L81159) immunoglobulin mu [Equus caballus]
Length = 154
Frame 3 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | 154
0 50 100 150
Plus Strand HSPs:
Score = 76 (26.8 bits), Expect = 0.098, P = 0.094
Identities = 17/31 (54%), Positives = 21/31 (67%), Frame = +3
Query: 51 VDPPGCRNSAREIV--VAFFMSITTVP*YVL 137
VDPPGCRNSARE + + FF+ + P VL
Sbjct: 1 VDPPGCRNSARENMNHLWFFLFLVAAPRCVL 31
>gi|10956629 ref|NP_066765.1| virulence associated protein VapA [Rhodococcus
equi] >gi|10657877|gb|AAG21716.1| (AF116907) virulence associated
protein VapA [Rhodococcus equi]
Length = 189
Frame 3 hits (HSPs): _____
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | 189
0 50 100 150
Plus Strand HSPs:
Score = 48 (16.9 bits), Expect = 0.15, Sum P(2) = 0.14
Identities = 10/20 (50%), Positives = 15/20 (75%), Frame = +3
Query: 18 SSTAVAAALELVDPPGCRNS 77
++TAVAAA ++ P GC N+
Sbjct: 13 AATAVAAAAAMI-PAGCANA 31
Score = 45 (15.8 bits), Expect = 0.15, Sum P(2) = 0.14
Identities = 9/15 (60%), Positives = 10/15 (66%), Frame = +1
Query: 121 FHSTFFTSKLQRTYK 165
F T FT+ LQR YK
Sbjct: 125 FWGTLFTNDLQRLYK 139
>gi|3093383|emb|CAA06601.1| (AJ005572) hypothetical protein [Plasmodium
falciparum]
Length = 186
Frame 2 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | 186
0 50 100 150
Plus Strand HSPs:
Score = 75 (26.4 bits), Expect = 0.21, P = 0.19
Identities = 16/25 (64%), Positives = 18/25 (72%), Frame = +2
Query: 44 RTSGSPGLQEFGTRDCRGVLHVYND 118
RTSGSPGLQEF T CR + H N+
Sbjct: 1 RTSGSPGLQEFCTSSCR-IRHEENN 24
>gi|7649667|emb|CAB88874.1| (AJ005810) phosphatidylinositol 4-kinase [Solanum
tuberosum]
Length = 517
Frame 3 hits (HSPs): __
__________________________________________________
Database sequence: | | | | | 517
0 150 300 450
Plus Strand HSPs:
Score = 80 (28.2 bits), Expect = 0.30, P = 0.26
Identities = 17/18 (94%), Positives = 17/18 (94%), Frame = +3
Query: 33 AAALELVDPPGCRNSARE 86
AAALELVDPPGCRNS RE
Sbjct: 1 AAALELVDPPGCRNS-RE 17
>gi|6523468|emb|CAB62404.1| (Y17270) UDP-N-acetylglucosamin
1-carboxyvinyltransferase [Streptomyces viridochromogenes]
Length = 140
Frame -3 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | 140
0 50 100
Minus Strand HSPs:
Score = 48 (16.9 bits), Expect = 1.1, Sum P(2) = 0.68
Identities = 14/37 (37%), Positives = 18/37 (48%), Frame = -3
Query: 122 NRRYRHEERHDNLSCRIPAARGIH*F*SGR-HRGGAP 15
+RR +ER + R+ A G H R HRGG P
Sbjct: 15 HRREDEQERVRGAAVRLTAQPGAHGAAPRRSHRGGVP 51
Score = 32 (11.3 bits), Expect = 1.1, Sum P(2) = 0.68
Identities = 5/5 (100%), Positives = 5/5 (100%), Frame = -3
Query: 179 RCHRR 165
RCHRR
Sbjct: 13 RCHRR 17
>gi|1083956|pir||JC4072 virulence-associated 15-17K antigen precursor -
Rhodococcus equi >gi|456378|gb|AAC43307.1| (U05250) 17-kDa
virulence associated protein [Corynebacterium hoagii]
>gi|496381|dbj|BAA04768.1| (D21236) virulence-associated 15-17-kDa
antigens [Rhodococcus equi] >gi|10801067|dbj|BAB16621.1| (AP001204)
virulence-associated 15-17kDa antigen (R. equi VapA protein)
[Corynebacterium hoagii]
Length = 189
Frame 3 hits (HSPs): _____
Frame 1 hits (HSPs): _____
Annotated Domains: ______
__________________________________________________
Database sequence: | | | | | 189
0 50 100 150
__________________
Annotated Domains:
Entrez domain: signal sequence 1..21
PROSITE AA_TRANSFER_CLASS_2: Aminotransferases c 7..16
__________________
Plus Strand HSPs:
Score = 45 (15.8 bits), Expect = 1.6, Sum P(2) = 0.80
Identities = 9/15 (60%), Positives = 10/15 (66%), Frame = +1
Query: 121 FHSTFFTSKLQRTYK 165
F T FT+ LQR YK
Sbjct: 125 FWGTLFTNDLQRLYK 139
Score = 38 (13.4 bits), Expect = 1.6, Sum P(2) = 0.80
Identities = 9/20 (45%), Positives = 14/20 (70%), Frame = +3
Query: 18 SSTAVAAALELVDPPGCRNS 77
++TAVAAA ++ P G N+
Sbjct: 13 AATAVAAAAAMI-PAGVANA 31
>gi|1296517|emb|CAA63639.1| (X93090) NADPH--ferrihemoprotein reductase
[Drosophila melanogaster]
Length = 679
Frame 2 hits (HSPs): __ ____
__________________________________________________
Database sequence: | | | | | | 679
0 150 300 450 600
Plus Strand HSPs:
Score = 47 (16.5 bits), Expect = 3.1, Sum P(2) = 0.95
Identities = 14/37 (37%), Positives = 24/37 (64%), Frame = +2
Query: 38 RSRTSGSP-GLQEFGT--RD-CRGVLHVYNDGSIVRSSRP 145
RS S SP G +++ + +D CR ++H+ D ++S RP
Sbjct: 407 RSMASISPEGKEKYQSWIQDACRNIVHILED---IKSCRP 443
Score = 46 (16.2 bits), Expect = 3.1, Sum P(2) = 0.95
Identities = 8/9 (88%), Positives = 9/9 (100%), Frame = +2
Query: 17 ELHRGGGRS 43
ELH+GGGRS
Sbjct: 295 ELHKGGGRS 303
>gi|12643739|sp|Q27597|NCPR_DROME NADPH-CYTOCHROME P450 REDUCTASE (CPR) (P450R)
>gi|7297099|gb|AAF52367.1| (AE003613) Cpr gene product [Drosophila
melanogaster]
Length = 679
Frame 2 hits (HSPs): __ ____
__________________________________________________
Database sequence: | | | | | | 679
0 150 300 450 600
Plus Strand HSPs:
Score = 47 (16.5 bits), Expect = 3.1, Sum P(2) = 0.95
Identities = 14/37 (37%), Positives = 24/37 (64%), Frame = +2
Query: 38 RSRTSGSP-GLQEFGT--RD-CRGVLHVYNDGSIVRSSRP 145
RS S SP G +++ + +D CR ++H+ D ++S RP
Sbjct: 407 RSMASISPEGKEKYQSWIQDACRNIVHILED---IKSCRP 443
Score = 46 (16.2 bits), Expect = 3.1, Sum P(2) = 0.95
Identities = 8/9 (88%), Positives = 9/9 (100%), Frame = +2
Query: 17 ELHRGGGRS 43
ELH+GGGRS
Sbjct: 295 ELHKGGGRS 303
>gi|11281919|pir||T51103 2,3-dehydratase [validated] - Streptomyces
antibioticus (ATCC 11891) >gi|5902167|gb|AAD55451.1| (AF055579)
2,3-dehydratase [Streptomyces antibioticus]
Length = 474
Frame 2 hits (HSPs): _ ___
__________________________________________________
Database sequence: | | | | | 474
0 150 300 450
Plus Strand HSPs:
Score = 56 (19.7 bits), Expect = 4.3, Sum P(2) = 0.99
Identities = 12/17 (70%), Positives = 12/17 (70%), Frame = +2
Query: 59 PGLQEFGTRDCRGVLHV 109
PGL F TR RGVLHV
Sbjct: 338 PGLAAFVTRRIRGVLHV 354
Score = 32 (11.3 bits), Expect = 4.3, Sum P(2) = 0.99
Identities = 5/6 (83%), Positives = 6/6 (100%), Frame = +2
Query: 20 LHRGGG 37
+HRGGG
Sbjct: 144 VHRGGG 149
>gi|7329192|gb|AAF59932.1| (AF237895) dTDP-4-keto-6-deoxyglucose
2,3-dehydratase [Streptomyces antibioticus]
Length = 474
Frame 2 hits (HSPs): _ ___
__________________________________________________
Database sequence: | | | | | 474
0 150 300 450
Plus Strand HSPs:
Score = 56 (19.7 bits), Expect = 4.3, Sum P(2) = 0.99
Identities = 12/17 (70%), Positives = 12/17 (70%), Frame = +2
Query: 59 PGLQEFGTRDCRGVLHV 109
PGL F TR RGVLHV
Sbjct: 338 PGLAAFVTRRIRGVLHV 354
Score = 32 (11.3 bits), Expect = 4.3, Sum P(2) = 0.99
Identities = 5/6 (83%), Positives = 6/6 (100%), Frame = +2
Query: 20 LHRGGG 37
+HRGGG
Sbjct: 144 VHRGGG 149
>gi|3928682|gb|AAC79661.1| (AF068264) pyrroloquinoline quinone synthesis B
[Pseudomonas aeruginosa]
Length = 52
Frame 2 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | 52
0 20 40
Plus Strand HSPs:
Score = 58 (20.4 bits), Expect = 5.3, P = 1.0
Identities = 12/31 (38%), Positives = 18/31 (58%), Frame = +2
Query: 83 RDCRGVLHVYNDGSIVRSSRPSFNVPINDDG 175
R+CRGV DGS+ R ++ ++DDG
Sbjct: 22 RNCRGV----RDGSVAAQPRTQSSIALSDDG 48
>gi|4902498|emb|CAB43528.1| (Y14249) Gs protein, alpha subunit [Geodia
cydonium]
Length = 381
Frame -2 hits (HSPs): ____
Frame -3 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | 381
0 150 300
Minus Strand HSPs:
Score = 47 (16.5 bits), Expect = 5.6, Sum P(2) = 1.0
Identities = 12/24 (50%), Positives = 13/24 (54%), Frame = -2
Query: 75 NSCSPGDPLVLERPPPRWSSXXLK 4
NS P D L L + PP SS LK
Sbjct: 300 NSYRPPDNLDLSKEPPGSSSTFLK 323
Score = 38 (13.4 bits), Expect = 5.6, Sum P(2) = 1.0
Identities = 7/16 (43%), Positives = 11/16 (68%), Frame = -3
Query: 158 VR*SLDVKNVLWNRRY 111
+R SLD+ +WN R+
Sbjct: 251 LRESLDLFEQIWNNRW 266
>gi|11351313|pir||B83625 probable gamma-glutamyltranspeptidase PA0164
[imported] - Pseudomonas aeruginosa (strain PAO1)
>gi|9945996|gb|AAG03554.1|AE004454_6 (AE004454) probable
gamma-glutamyltranspeptidase [Pseudomonas aeruginosa]
Length = 538
Frame 3 hits (HSPs): __
Frame 2 hits (HSPs): __
__________________________________________________
Database sequence: | | | | | 538
0 150 300 450
Plus Strand HSPs:
Score = 49 (17.2 bits), Expect = 5.9, Sum P(2) = 1.0
Identities = 10/20 (50%), Positives = 14/20 (70%), Frame = +3
Query: 9 AXRSSTAVAAALELVDPPGC 68
A ++ A AAAL +V+P GC
Sbjct: 46 AIDAAIATAAALTVVEPTGC 65
Score = 39 (13.7 bits), Expect = 5.9, Sum P(2) = 1.0
Identities = 7/12 (58%), Positives = 7/12 (58%), Frame = +2
Query: 71 EFGTRDCRGVLH 106
EFG RDC H
Sbjct: 286 EFGERDCARTWH 297
>gi|4966275|gb|AAD34651.1|AF039046_12 (AF039046) R09B5.12 gene product
[Caenorhabditis elegans]
Length = 388
Frame -1 hits (HSPs): ___ ____
__________________________________________________
Database sequence: | | | | 388
0 150 300
Minus Strand HSPs:
Score = 50 (17.6 bits), Expect = 7.2, Sum P(2) = 1.0
Identities = 10/22 (45%), Positives = 16/22 (72%), Frame = -1
Query: 130 YYGTVVIDMKNATTISRAEFLQ 65
+YG + +++K ATTI+ FLQ
Sbjct: 301 FYG-IELNLKGATTITAKRFLQ 321
Score = 34 (12.0 bits), Expect = 7.2, Sum P(2) = 1.0
Identities = 4/14 (28%), Positives = 9/14 (64%), Frame = -1
Query: 181 NGAIVVYRYVEAWT 140
+G + Y +++ WT
Sbjct: 252 SGLVAAYYHLQLWT 265
>gi|1684626|emb|CAA70548.1| (Y09373) lacZ-PhoC fusion [synthetic construct]
Length = 262
Frame 3 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | | 262
0 50 100 150 200 250
Plus Strand HSPs:
Score = 63 (22.2 bits), Expect = 8.3, P = 1.0
Identities = 14/14 (100%), Positives = 14/14 (100%), Frame = +3
Query: 18 SSTAVAAALELVDP 59
SSTAVAAALELVDP
Sbjct: 20 SSTAVAAALELVDP 33
>gi|11344879|gb|AAG34521.1| (AF298784) enhanced green fluorescent protein 3
[N-terminal GFP fusion vector pUG34] >gi|11344904|gb|AAG34539.1|
(AF298791) enhanced green fluorescent protein 3 [N-terminal GFP
fusion vector pUG36]
Length = 264
Frame 2 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | | 264
0 50 100 150 200 250
Plus Strand HSPs:
Score = 63 (22.2 bits), Expect = 8.4, P = 1.0
Identities = 12/13 (92%), Positives = 13/13 (100%), Frame = +2
Query: 38 RSRTSGSPGLQEF 76
+SRTSGSPGLQEF
Sbjct: 238 KSRTSGSPGLQEF 250
>gi|6491882|gb|AAF14059.1| (AF045538) Mamu IgG-rh3 heavy chain [Macaca mulatta]
Length = 353
Frame -1 hits (HSPs): _______
Frame -2 hits (HSPs): __
__________________________________________________
Database sequence: | | | | 353
0 150 300
Minus Strand HSPs:
Score = 47 (16.5 bits), Expect = 9.3, Sum P(2) = 1.0
Identities = 15/42 (35%), Positives = 18/42 (42%), Frame = -1
Query: 136 RTYYGTVVIDMKNATTISRAEFLQPGGSTSSRAA-ATAVELL 14
+TY VV + N R EF P G T+ A ELL
Sbjct: 84 QTYVCNVVHEPSNTKVDKRVEFTPPCGDTTPPCPPCPAPELL 125
Score = 35 (12.3 bits), Expect = 9.3, Sum P(2) = 1.0
Identities = 7/9 (77%), Positives = 8/9 (88%), Frame = -2
Query: 180 TVPSSFIGT 154
TVPSS +GT
Sbjct: 75 TVPSSSLGT 83
>gi|8394057 ref|NP_058565.1| corin; Low Density Lipoprotein Receptor Related
Protein 4 [Mus musculus] >gi|7513714|pir||JE0315 low-density
lipoprotein receptor-related protein - mouse
>gi|3869145|dbj|BAA34371.1| (AB013874) Low Density Lipoprotein
Receptor Related Protein 4 [Mus musculus]
Length = 1113
Frame -2 hits (HSPs): __ __
Frame -3 hits (HSPs): _
__________________________________________________
Database sequence: | | | | | | | | | 1113
0 150 300 450 600 750 900 1050
Minus Strand HSPs:
Score = 47 (16.5 bits), Expect = 9.5, Sum P(3) = 1.0
Identities = 10/21 (47%), Positives = 13/21 (61%), Frame = -2
Query: 75 NSC--SPGDPLVLERPPPRWS 19
+SC G PLV ERP +W+
Sbjct: 1046 DSCMGDSGGPLVCERPGGQWT 1066
Score = 33 (11.6 bits), Expect = 9.5, Sum P(3) = 1.0
Identities = 6/7 (85%), Positives = 7/7 (100%), Frame = -2
Query: 168 SFIGTLK 148
SF+GTLK
Sbjct: 134 SFVGTLK 140
Score = 30 (10.6 bits), Expect = 9.5, Sum P(3) = 1.0
Identities = 5/10 (50%), Positives = 7/10 (70%), Frame = -3
Query: 104 EERHDNLSCR 75
++RH L CR
Sbjct: 271 DDRHGLLPCR 280
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.93
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.343 0.142 0.430
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.328 0.147 0.463
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.362 0.158 0.696
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.325 0.134 0.386
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.331 0.145 0.474
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.371 0.168 0.701
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 59 58 10. 58 3 12 22 0.093 30
26 0.089 30
+2 0 60 59 10. 58 3 12 22 0.095 30
26 0.094 30
+1 0 60 58 10. 58 3 12 22 0.093 30
26 0.089 30
-1 0 60 59 10. 58 3 12 22 0.095 30
26 0.094 30
-2 0 60 58 10. 58 3 12 22 0.093 30
26 0.089 30
-3 0 59 58 10. 58 3 12 22 0.093 30
26 0.089 30
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 36
No. of states in DFA: 571 (56 KB)
Total size of DFA: 107 KB (128 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 67.63u 1.11s 68.74t Elapsed: 00:00:12
Total cpu time: 67.66u 1.15s 68.81t Elapsed: 00:00:12
Start: Mon Oct 1 20:42:01 2001 End: Mon Oct 1 20:42:13 2001
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000