BLASTX+BEAUTY Search Results

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BLASTX+BEAUTY Search Results

WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.
BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.
BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract
Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract




processing output:
cycle 1
cycle 2
cycle 3
cycle 4
Repeat sequence:
   SW  perc perc perc  query             position in query    matching repeat         position in  repeat
score  div. del. ins.  sequence          begin  end (left)    repeat   class/family   begin  end (left)  ID

   23   0.0  0.0  0.0  A08F12_CONSENSUS      1   23  (579) +  AT_rich  Low_complexity     1   23    (0)      

Alignments:
23  0.00  0.00  0.00  A08F12_CONSENSUS  1  23  (579)  C  AT_rich#Low_complexity  (277)  23  1  5

  A08F12_CONSENSU      1 TTTTTTTTTTTTTTTTTTTAAAT 23     
                            v v  v   v    v vvv 
C AT_rich#Low_com     23 TTTATATTATTTATTTTATTTTT 1      

Transitions / transversions = 0.00 (0 / 8)
Gap_init rate = 0.00 (0 / 23), avg. gap size = 0.00 (0 / 0)  

Masked Sequence:
>A08F12_CONSENSUS
NNNNNNNNNNNNNNNNNNNNNNNGAAGAGTAAGTTGGCTTCCAAGGAATA
AAGTAAAATGCCTTGAGTTTTATATAGTAAGATGTATTGTACATTTAAGA
GTGGAGAAGAACATAAAGATGATTGATTTACAGAGTTGGAGCCCTCTCAA
CGGAGCCAGCAATCACAGTGAGCAGGTTATTACCAAAAGGGTCACTGAGA
TGTTTTGCTAAGTTCTCAACTGGACCTTCTCCAGTGACATAAGCTTGGAA
GTANAAACCAAGCATTGCAAACATTGCAAGCCTACCATTCTTAATTTCCT
TCACCTTTANAAGTTGCAGCTTGGTCTGGATCCTTTGCTAGGCCCAATGG
GTTCNAATGGACCACCTGGATGAACTTGTCTTCCAAATCCAGGCCATTAA
TTATTCTGTAGTACTCAGCACCACCCACAANAACTATCTCACCAACNACA
GCCAACNATAAAATTGAATGGGAANGGTTTCCCCAAATTNTTTCCNCGTT
TCCCCCCNCCAAAAAACCAACCCCCGGTNTTTAAAACCAAAAACCCCCGG
AACNNNAATTTTCCCCCCTCTTTTTTTTAAGGGCCCCCGGGAATTAAAAA
AT

Summary:
==================================================
file name: /repeatmasker/tmp/RM2seq
sequences:            1
total length:       602 bp
GC level:         40.14 %
bases masked:        23 bp (  3.82 %)
==================================================
               number of      length   percentage
               elements*    occupied  of sequence
--------------------------------------------------
SINEs:                0            0 bp     0.00 %
      ALUs            0            0 bp     0.00 %
      MIRs            0            0 bp     0.00 %

LINEs:                0            0 bp     0.00 %
      LINE1           0            0 bp     0.00 %
      LINE2           0            0 bp     0.00 %
      L3/CR1          0            0 bp     0.00 %

LTR elements:         0            0 bp     0.00 %
      MaLRs           0            0 bp     0.00 %
      ERVL            0            0 bp     0.00 %
      ERV_classI      0            0 bp     0.00 %
      ERV_classII     0            0 bp     0.00 %

DNA elements:         0            0 bp     0.00 %
      MER1_type       0            0 bp     0.00 %
      MER2_type       0            0 bp     0.00 %

Unclassified:         0            0 bp     0.00 %

Total interspersed repeats:        0 bp     0.00 %


Small RNA:            0            0 bp     0.00 %

Satellites:           0            0 bp     0.00 %
Simple repeats:       0            0 bp     0.00 %
Low complexity:       1           23 bp     3.82 %
==================================================

* most repeats fragmented by insertions or deletions
  have been counted as one element

The sequence(s) were assumed to be of primate origin.
RepeatMasker version 07/16/2000               default
ProcessRepeats version 07/16/2000
Repbase version 03/31/2000


Reference:  Gish, Warren (1994-1997).  unpublished.
Gish, Warren and David J. States (1993).  Identification of protein coding
regions by database similarity search.  Nat. Genet. 3:266-72.

Notice:  statistical significance is estimated under the assumption that the
equivalent of one entire reading frame in the query sequence codes for protein
and that significant alignments will involve only coding reading frames.

Query=  A08F12_CONSENSUS
        (602 letters)
  Translating both strands of query sequence in all 6 reading frames

Database:  nr
           625,274 sequences; 197,782,623 total letters.


     Observed Numbers of Database Sequences Satisfying
    Various EXPECTation Thresholds (E parameter values)

        Histogram units:      = 4 Sequences     : less than 4 sequences

 EXPECTation Threshold
 (E parameter)
    |
    V   Observed Counts-->
  10000 1245 202 |==================================================
   6310 1043 173 |===========================================
   3980  870 190 |===============================================
   2510  680 138 |==================================
   1580  542  64 |================
   1000  478  59 |==============
    631  419  58 |==============
    398  361  28 |=======
    251  333  20 |=====
    158  313  13 |===
    100  300   7 |=
   63.1  293   2 |:
   39.8  291   7 |=
   25.1  284   3 |:
   15.8  281   2 |:
 >>>>>>>>>>>>>>>>>>>>>  Expect = 10.0, Observed = 279  <<<<<<<<<<<<<<<<<
   10.0  279   6 |=
   6.31  273   2 |:
   3.98  271   4 |=
   2.51  267   0 |
   1.58  267   2 |:
   1.00  265   0 |
   0.63  265   2 |:
   0.40  263   0 |
   0.25  263   1 |:
   0.16  262   2 |:
   0.10  260   0 |
  0.063  260   1 |:
  0.040  259   0 |
  0.025  259   0 |
  0.016  259   1 |:
  0.010  258   1 |:
 0.0063  257   0 |
 0.0040  257   1 |:
 0.0025  256   0 |
 0.0016  256   1 |:


                                                                     Smallest
                                                                       Sum
                                                     Reading  High  Probability
Sequences producing High-scoring Segment Pairs:        Frame Score  P(N)      N
gi|7443228|pir||T04049chlorophyll a/b-binding protein... -2   280  9.5e-41   2
gi|19184|emb|CAA43590.1|(X61287) Type I (26 kD) CP29 ... -2   256  8.4e-40   2
gi|100200|pir||S16294chlorophyll a/b-binding protein ... -2   256  8.4e-40   2
gi|7443226|pir||T02250chlorophyll a/b-binding protein... -2   254  2.8e-39   2
gi|1644289|emb|CAA65042.1|(X95727) chlorophyll a/b-bi... -2   264  7.4e-39   2
gi|7443227|pir||T02251chlorophyll a/b-binding protein... -2   254  1.2e-38   2
gi|100573|pir||S21386chlorophyll a/b-binding protein ... -2   251  4.0e-38   2
gi|322391|pir||S31865chlorophyll a/b-binding protein ... -2   267  1.2e-36   2
gi|12060444|dbj|BAB20613.1|(AB050007) CP26 [Chlamydom... -2   203  6.6e-25   3
gi|2407314|gb|AAB70556.1|(AF017998) chlorophyll a/b b... -2   167  2.5e-20   2
gi|2119847|pir||S60270chlorophyll a/b binding protein... -2   172  6.5e-19   2
gi|541799|pir||JQ2333light-harvesting chlorophyll a/b... -2   170  1.0e-18   2
gi|115820|sp|P15194|CB2B_PINSYCHLOROPHYLL A-B BINDING... -2   172  1.0e-18   2
gi|556367|gb|AAA50310.1|(L36064) light-harvesting chl... -2   170  1.1e-18   2
gi|3417451|dbj|BAA32346.1|(AB013728) light-harvesting... -2   174  1.2e-18   2
gi|8925554|gb|AAF81518.1|AF268320_1(AF268320) light-h... -2   172  1.5e-18   2
gi|3928140|emb|CAA10284.1|(AJ131044) chlorophyll a/b ... -2   171  1.6e-18   2
gi|2196770|gb|AAB61236.1|(AF003127) chlorophyll a/b-b... -2   170  1.8e-18   2
gi|1085985|pir||S51657light harvesting chlorophyll a ... -2   168  1.8e-18   2
gi|1085986|pir||S51658light harvesting chlorophyll a ... -2   168  1.8e-18   2
gi|8925556|gb|AAF81519.1|AF268321_1(AF268321) light-h... -2   172  1.9e-18   2
gi|421916|pir||S29904chlorophyll a/b-binding protein ... -2   168  1.9e-18   2
gi|115819|sp|P07370|CB2B_LYCESCHLOROPHYLL A-B BINDING... -2   170  2.0e-18   2
gi|224927|prf||1204205Bprotein 1B,chlorophyll binding... -2   170  2.0e-18   2
gi|693916|gb|AAA80591.1|(U21111) chlorophyll a/b bind... -2   170  2.0e-18   2
gi|693922|gb|AAA80594.1|(U21114) chlorophyll a/b bind... -2   170  2.0e-18   2
gi|115798|sp|P04781|CB23_PETSPCHLOROPHYLL A-B BINDING... -2   170  2.2e-18   2
gi|2196772|gb|AAB61237.1|(AF003128) chlorophyll a/b-b... -2   170  2.2e-18   2
gi|1769849|emb|CAA99993.1|(Z75663) chlorophyll a/b bi... -2   168  2.2e-18   2
gi|688315|gb|AAC78690.1|(S73603) chlorophyll a/b-bind... -2   168  2.2e-18   2
gi|16374|emb|CAA27542.1|(X03908) chlorophyll a/b bind... -2   170  2.4e-18   2
gi|12324161|gb|AAG52048.1|AC022455_2(AC022455) chloro... -2   170  2.4e-18   2
gi|8925552|gb|AAF81517.1|AF268319_1(AF268319) light-h... -2   171  2.4e-18   2
gi|115781|sp|P27492|CB21_TOBACCHLOROPHYLL A-B BINDING... -2   170  2.7e-18   2
gi|4757371|dbj|BAA77273.1|(AB026686) chlorophyll a/b-... -2   164  2.7e-18   2
gi|115814|sp|P27490|CB28_PEACHLOROPHYLL A-B BINDING P... -2   171  2.8e-18   2
gi|115767|sp|P04777|CB21_ARATHCHLOROPHYLL A-B BINDING... -2   170  2.8e-18   2
gi|115783|sp|P04778|CB22_ARATHCHLOROPHYLL A-B BINDING... -2   170  2.8e-18   2
gi|115805|sp|P27495|CB24_TOBACCHLOROPHYLL A-B BINDING... -2   170  2.8e-18   2
gi|3036948|dbj|BAA25392.1|(AB012638) light harvesting... -2   170  2.8e-18   2
gi|3036955|dbj|BAA25396.1|(AB012641) light harvesting... -2   170  2.8e-18   2
gi|9587207|gb|AAF89207.1|AF279250_1(AF279250) LHCII t... -2   168  2.8e-18   2
gi|2804572|dbj|BAA24493.1|(AB006081) chlorophyll a/b-... -2   168  2.8e-18   2
gi|99489|pir||S15912chlorophyll a/b-binding protein I... -2   172  3.1e-18   2
gi|115787|sp|P12331|CB22_ORYSACHLOROPHYLL A-B BINDING... -2   170  3.1e-18   2
gi|115791|sp|P09755|CB22_SOYBNCHLOROPHYLL A-B BINDING... -2   168  3.1e-18   2
gi|115792|sp|P27493|CB22_TOBACCHLOROPHYLL A-B BINDING... -2   170  3.2e-18   2
gi|693914|gb|AAA80589.1|(U20983) chlorophyll a/b bind... -2   170  3.2e-18   2
gi|3036942|dbj|BAA25388.1|(AB012636) light harvesting... -2   170  3.2e-18   2
gi|3036944|dbj|BAA25389.1|(AB012637) light harvesting... -2   170  3.2e-18   2



Locally-aligned regions (HSPs) with respect to query sequence:

Locus_ID                Frame -1 Hits
gi|7443228             |                                                  
gi|19184               |                                                  
gi|100200              |                                                  
gi|7443226             |                                                  
gi|1644289             |                                                  
gi|7443227             |                                                  
gi|100573              |                                                  
gi|322391              |                                                  
gi|12060444            |                         _____   ______________   
gi|2407314             |                                                  
gi|2119847             |                                                  
gi|541799              |                                                  
gi|115820              |                                                  
gi|556367              |                                                  
gi|3417451             |                                                  
gi|8925554             |                                                  
gi|3928140             |                                                  
gi|2196770             |                                                  
gi|1085985             |                                                  
gi|1085986             |                                                  
gi|8925556             |                                                  
gi|421916              |                                                  
gi|115819              |                                                  
gi|224927              |                                                  
gi|693916              |                                                  
gi|693922              |                                                  
gi|115798              |                                                  
gi|2196772             |                                                  
gi|1769849             |                                                  
gi|688315              |                                                  
gi|16374               |                                                  
gi|12324161            |                                                  
gi|8925552             |                                                  
gi|115781              |                                                  
gi|4757371             |                                                  
gi|115814              |                                                  
gi|115767              |                                                  
gi|115783              |                                                  
gi|115805              |                                                  
gi|3036948             |                                                  
gi|3036955             |                                                  
gi|9587207             |                                                  
gi|2804572             |                                                  
gi|99489               |                                                  
gi|115787              |                                                  
gi|115791              |                                                  
gi|115792              |                                                  
gi|693914              |                                                  
gi|3036942             |                                                  
gi|3036944             |                                                  
                        __________________________________________________
Query sequence:        |            |           |            |           || 201
                       0           50         100          150         200


Locus_ID                Frame -2 Hits
gi|7443228             |          _                           ___________ 
gi|19184               |          _                           ________    
gi|100200              |          _                           ________    
gi|7443226             |          _                           ________    
gi|1644289             |          _                           ___________ 
gi|7443227             |          _                           ________    
gi|100573              |          _                           ___________ 
gi|322391              |          _                                       
gi|12060444            |                                                  
gi|2407314             |              ____________                        
gi|2119847             |              ____________                        
gi|541799              |              ____________                        
gi|115820              |              ____________                        
gi|556367              |              ____________                        
gi|3417451             |              ____________                        
gi|8925554             |             _____________                        
gi|3928140             |              ____________                        
gi|2196770             |              ____________                        
gi|1085985             |              ____________                        
gi|1085986             |              ____________                        
gi|8925556             |             _____________                        
gi|421916              |              ____________                        
gi|115819              |              ____________                        
gi|224927              |              ____________                        
gi|693916              |              ____________                        
gi|693922              |              ____________                        
gi|115798              |              ____________                        
gi|2196772             |              ____________                        
gi|1769849             |              ____________                        
gi|688315              |              ____________                        
gi|16374               |              ____________                        
gi|12324161            |              ____________                        
gi|8925552             |             _____________                        
gi|115781              |              ____________                        
gi|4757371             |              ____________                        
gi|115814              |              ____________                        
gi|115767              |              ____________                        
gi|115783              |              ____________                        
gi|115805              |              ____________                        
gi|3036948             |              ____________                        
gi|3036955             |              ____________                        
gi|9587207             |              ____________                        
gi|2804572             |              ____________                        
gi|99489               |              ____________                        
gi|115787              |              ____________                        
gi|115791              |              ____________                        
gi|115792              |              ____________                        
gi|693914              |              ____________                        
gi|3036942             |              ____________                        
gi|3036944             |              ____________                        
                        __________________________________________________
Query sequence:        |            |           |            |           || 201
                       0           50         100          150         200


Locus_ID                Frame -3 Hits
gi|12060444            |                            ___                   
gi|2407314             |                            ____                  
gi|2119847             |                            ___                   
gi|541799              |                            ___                   
gi|115820              |                            ___                   
gi|556367              |                            ___                   
gi|3417451             |                            ___                   
gi|8925554             |                            ___                   
gi|3928140             |                            ___                   
gi|2196770             |                            ___                   
gi|1085985             |                            ___                   
gi|1085986             |                            ___                   
gi|8925556             |                            ___                   
gi|421916              |                            ___                   
gi|115819              |                            ___                   
gi|224927              |                            ___                   
gi|693916              |                            ___                   
gi|693922              |                            ___                   
gi|115798              |                            ___                   
gi|2196772             |                            ___                   
gi|1769849             |                            ___                   
gi|688315              |                            ___                   
gi|16374               |                            ___                   
gi|12324161            |                            ___                   
gi|8925552             |                            ___                   
gi|115781              |                            ___                   
gi|115814              |                            ___                   
gi|115767              |                            ___                   
gi|115783              |                            ___                   
gi|115805              |                            ___                   
gi|3036948             |                            ___                   
gi|3036955             |                            ___                   
gi|9587207             |                            ___                   
gi|2804572             |                            ___                   
gi|99489               |                            ___                   
gi|115787              |                            ___                   
gi|115791              |                            ___                   
gi|115792              |                            ___                   
gi|693914              |                            ___                   
gi|3036942             |                            ___                   
gi|3036944             |                            ___                   
                        __________________________________________________
Query sequence:        |            |           |            |           || 201
                       0           50         100          150         200


Use the  and  icons to retrieve links to Entrez:
E = Retrieve Entrez links (e.g., Medline abstracts, FASTA-formatted sequence reports).
R = Retrieve links to Related sequences (neighbors).

Use the  icon (if present) to retrieve links to the Sequence Retrieval System (SRS).

Use the  icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .

Use the  icon (if present) to retrieve links to the Protein Data Bank database.

WARNING:  Descriptions of 229 database sequences were not reported due to the
          limiting value of parameter V = 50.



 >gi|7443228|pir||T04049  chlorophyll a/b-binding protein F24G24.140 -
            Arabidopsis thaliana >gi|4538963|emb|CAB39787.1| (AL049488)
            chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
            >gi|4741958|gb|AAD28776.1|AF134129_1 (AF134129) Lhcb5 protein
            [Arabidopsis thaliana] >gi|7267731|emb|CAB78157.1| (AL161517)
            chlorophyll a/b-binding protein-like [Arabidopsis thaliana]
            >gi|11908106|gb|AAG41482.1|AF326900_1 (AF326900) chlorophyll
            a/b-binding protein-like protein [Arabidopsis thaliana]
            >gi|12642916|gb|AAK00400.1|AF339718_1 (AF339718) putative
            chlorophyll a/b-binding protein [Arabidopsis thaliana]
            Length = 280

Frame -1 hits (HSPs):                         __________________          
Frame -2 hits (HSPs):                          ________        ___________
                        __________________________________________________
Database sequence:     |        |        |        |        |        |     | 280
                       0       50      100      150      200      250

  Minus Strand HSPs:

 Score = 280 (98.6 bits), Expect = 9.5e-41, Sum P(2) = 9.5e-41
 Identities = 55/61 (90%), Positives = 57/61 (93%), Frame = -2

Query:   313 LXKVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGSVERAPT 134
             L KVKEIKNGRLAMFAMLG + QAYVTGEGPVENLAKHLSDPFGNNLLTVIAG+ ERAPT
Sbjct:   220 LLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGTAERAPT 279

Query:   133 L 131
             L
Sbjct:   280 L 280

 Score = 179 (63.0 bits), Expect = 9.5e-41, Sum P(2) = 9.5e-41
 Identities = 47/98 (47%), Positives = 52/98 (53%), Frame = -1

Query:   599 F*FPGALKKKRGENXXSGGFWF*XPGVGFLXGGNXEXIWGNXSHSILXLAVVGEIVXVGG 420
             F  P AL K  G N      WF   G   L  GN    +G      L LAVV E+V +GG
Sbjct:   128 FIIPEALNKY-GANCGPEAVWF-KTGA-LLLDGNTLNYFGKNIPINLVLAVVAEVVLLGG 184

Query:   419 AEYYRIINGLDLEDKFIQVVHXNPLGLAKDPDQAATXK 306
             AEYYRI NGLD EDK       +PLGLAKDP+Q A  K
Sbjct:   185 AEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLK 222

 Score = 41 (14.4 bits), Expect = 2.8e-26, Sum P(2) = 2.8e-26
 Identities = 13/38 (34%), Positives = 16/38 (42%), Frame = -2

Query:   580 LKKRGGKIXVPGVFGFKXRGLVFWXGETXKXFGETXPI 467
             L K G       V+ FK  G +   G T   FG+  PI
Sbjct:   134 LNKYGANCGPEAVW-FKT-GALLLDGNTLNYFGKNIPI 169


 >gi|19184|emb|CAA43590.1|  (X61287) Type I (26 kD) CP29  polypeptide
            [Lycopersicon esculentum]
            Length = 286

Frame -1 hits (HSPs):                          _________________          
Frame -2 hits (HSPs):                            ______        ___________
                        __________________________________________________
Database sequence:     |        |        |        |       |        |      | 286
                       0       50      100      150     200      250

  Minus Strand HSPs:

 Score = 256 (90.1 bits), Expect = 8.4e-40, Sum P(2) = 8.4e-40
 Identities = 49/61 (80%), Positives = 54/61 (88%), Frame = -2

Query:   313 LXKVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGSVERAPT 134
             + KVKEIKNGRLAMF+MLG + QAYVTG+GPVENLA HLSDPFGNNLLTVI G+ ER PT
Sbjct:   226 ILKVKEIKNGRLAMFSMLGFFIQAYVTGQGPVENLAAHLSDPFGNNLLTVIGGASERVPT 285

Query:   133 L 131
             L
Sbjct:   286 L 286

 Score = 194 (68.3 bits), Expect = 8.4e-40, Sum P(2) = 8.4e-40
 Identities = 51/98 (52%), Positives = 54/98 (55%), Frame = -1

Query:   599 F*FPGALKKKRGENXXSGGFWF*XPGVGFLXGGNXEXIWGNXSHSILXLAVVGEIVXVGG 420
             F  P A  K  G N      WF   G   L  GN    +G      L LAVV E+V VGG
Sbjct:   134 FIIPEAFNKF-GANCGPEAVWF-KTGA-LLLDGNTLNYFGKNIPINLILAVVAEVVLVGG 190

Query:   419 AEYYRIINGLDLEDKFIQVVHXNPLGLAKDPDQAATXK 306
             AEYYRIINGLDLEDK       +PLGLAKDPDQAA  K
Sbjct:   191 AEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAAILK 228

 Score = 39 (13.7 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
 Identities = 10/28 (35%), Positives = 12/28 (42%), Frame = -2

Query:   550 PGVFGFKXRGLVFWXGETXKXFGETXPI 467
             P    FK  G +   G T   FG+  PI
Sbjct:   149 PEAVWFKT-GALLLDGNTLNYFGKNIPI 175


 >gi|100200|pir||S16294  chlorophyll a/b-binding protein type I precursor -
            tomato
            Length = 286

Frame -1 hits (HSPs):                          _________________          
Frame -2 hits (HSPs):                            ______        ___________
                        __________________________________________________
Database sequence:     |        |        |        |       |        |      | 286
                       0       50      100      150     200      250

  Minus Strand HSPs:

 Score = 256 (90.1 bits), Expect = 8.4e-40, Sum P(2) = 8.4e-40
 Identities = 49/61 (80%), Positives = 54/61 (88%), Frame = -2

Query:   313 LXKVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGSVERAPT 134
             + KVKEIKNGRLAMF+MLG + QAYVTG+GPVENLA HLSDPFGNNLLTVI G+ ER PT
Sbjct:   226 ILKVKEIKNGRLAMFSMLGFFIQAYVTGQGPVENLAAHLSDPFGNNLLTVIGGASERVPT 285

Query:   133 L 131
             L
Sbjct:   286 L 286

 Score = 194 (68.3 bits), Expect = 8.4e-40, Sum P(2) = 8.4e-40
 Identities = 51/98 (52%), Positives = 54/98 (55%), Frame = -1

Query:   599 F*FPGALKKKRGENXXSGGFWF*XPGVGFLXGGNXEXIWGNXSHSILXLAVVGEIVXVGG 420
             F  P A  K  G N      WF   G   L  GN    +G      L LAVV E+V VGG
Sbjct:   134 FIIPEAFNKF-GANCGPEAVWF-KTGA-LLLDGNTLNYFGKNIPINLILAVVAEVVLVGG 190

Query:   419 AEYYRIINGLDLEDKFIQVVHXNPLGLAKDPDQAATXK 306
             AEYYRIINGLDLEDK       +PLGLAKDPDQAA  K
Sbjct:   191 AEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAAILK 228

 Score = 39 (13.7 bits), Expect = 1.5e-23, Sum P(2) = 1.5e-23
 Identities = 10/28 (35%), Positives = 12/28 (42%), Frame = -2

Query:   550 PGVFGFKXRGLVFWXGETXKXFGETXPI 467
             P    FK  G +   G T   FG+  PI
Sbjct:   149 PEAVWFKT-GALLLDGNTLNYFGKNIPI 175


 >gi|7443226|pir||T02250  chlorophyll a/b-binding protein CP26 precursor - maize
            >gi|733454|gb|AAA64414.1| (U23188) chlorophyll a/b-binding
            apoprotein CP26 precursor [Zea mays]
            Length = 283

Frame -1 hits (HSPs):                           ________________          
Frame -2 hits (HSPs):                            ______        ___________
                        __________________________________________________
Database sequence:     |        |        |        |        |       |      | 283
                       0       50      100      150      200     250

  Minus Strand HSPs:

 Score = 254 (89.4 bits), Expect = 2.8e-39, Sum P(2) = 2.8e-39
 Identities = 48/61 (78%), Positives = 54/61 (88%), Frame = -2

Query:   313 LXKVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGSVERAPT 134
             + KVKEIKNGRLAMF+M   + QAYVTGEGPVENLAKHLSDPFGNNLLTVI+G+ ER P+
Sbjct:   223 ILKVKEIKNGRLAMFSMFAFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISGAAERTPS 282

Query:   133 L 131
             L
Sbjct:   283 L 283

 Score = 191 (67.2 bits), Expect = 2.8e-39, Sum P(2) = 2.8e-39
 Identities = 46/89 (51%), Positives = 51/89 (57%), Frame = -1

Query:   572 KRGENXXSGGFWF*XPGVGFLXGGNXEXIWGNXSHSILXLAVVGEIVXVGGAEYYRIING 393
             K G N      WF   G   L  GN    +GN     L +AV+ E+V VGGAEYYRIING
Sbjct:   139 KFGANCGPEAVWF-KTGA-LLLDGNTLSYFGNSIPINLVVAVIAEVVLVGGAEYYRIING 196

Query:   392 LDLEDKFIQVVHXNPLGLAKDPDQAATXK 306
             LDLEDK       +PLGLA DPDQAA  K
Sbjct:   197 LDLEDKLHPGGPFDPLGLASDPDQAAILK 225

 Score = 39 (13.7 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
 Identities = 10/28 (35%), Positives = 12/28 (42%), Frame = -2

Query:   550 PGVFGFKXRGLVFWXGETXKXFGETXPI 467
             P    FK  G +   G T   FG + PI
Sbjct:   146 PEAVWFKT-GALLLDGNTLSYFGNSIPI 172


 >gi|1644289|emb|CAA65042.1|  (X95727) chlorophyll a/b-binding protein CP26 in PS
            II [Brassica juncea]
            Length = 283

Frame -1 hits (HSPs):                          _________________          
Frame -2 hits (HSPs):                           _______        ___________
                        __________________________________________________
Database sequence:     |        |        |        |        |       |      | 283
                       0       50      100      150      200     250

  Minus Strand HSPs:

 Score = 264 (92.9 bits), Expect = 7.4e-39, Sum P(2) = 7.4e-39
 Identities = 51/61 (83%), Positives = 55/61 (90%), Frame = -2

Query:   313 LXKVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGSVERAPT 134
             L KVKEIKNGRLAMF+M   + QAYVTGEGPVENL+KHLSDPFGNNLLTVIAG+ ERAPT
Sbjct:   223 LLKVKEIKNGRLAMFSMFAFFIQAYVTGEGPVENLSKHLSDPFGNNLLTVIAGTAERAPT 282

Query:   133 L 131
             L
Sbjct:   283 L 283

 Score = 177 (62.3 bits), Expect = 7.4e-39, Sum P(2) = 7.4e-39
 Identities = 46/95 (48%), Positives = 51/95 (53%), Frame = -1

Query:   590 PGALKKKRGENXXSGGFWF*XPGVGFLXGGNXEXIWGNXSHSILXLAVVGEIVXVGGAEY 411
             P AL K  G N      WF   G   L  GN    +G      L LAVVGE+V +GGAEY
Sbjct:   134 PEALNKY-GANCGPEAVWF-KTGA-LLLDGNTLSYFGKNIPINLVLAVVGEVVLLGGAEY 190

Query:   410 YRIINGLDLEDKFIQVVHXNPLGLAKDPDQAATXK 306
             YRI NGLD EDK       +PL LAKDP+Q A  K
Sbjct:   191 YRITNGLDFEDKLHPGGPFDPLDLAKDPEQGALLK 225

 Score = 41 (14.4 bits), Expect = 1.3e-24, Sum P(2) = 1.3e-24
 Identities = 13/38 (34%), Positives = 16/38 (42%), Frame = -2

Query:   580 LKKRGGKIXVPGVFGFKXRGLVFWXGETXKXFGETXPI 467
             L K G       V+ FK  G +   G T   FG+  PI
Sbjct:   137 LNKYGANCGPEAVW-FKT-GALLLDGNTLSYFGKNIPI 172


 >gi|7443227|pir||T02251  chlorophyll a/b-binding protein CP26 precursor - maize
            >gi|733456|gb|AAA64415.1| (U23189) chlorophyll a/b-binding
            apoprotein CP26 precursor [Zea mays]
            Length = 283

Frame -1 hits (HSPs):                           ________________          
Frame -2 hits (HSPs):                            ______        ___________
                        __________________________________________________
Database sequence:     |        |        |        |        |       |      | 283
                       0       50      100      150      200     250

  Minus Strand HSPs:

 Score = 254 (89.4 bits), Expect = 1.2e-38, Sum P(2) = 1.2e-38
 Identities = 48/61 (78%), Positives = 54/61 (88%), Frame = -2

Query:   313 LXKVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGSVERAPT 134
             + KVKEIKNGRLAMF+M   + QAYVTGEGPVENLAKHLSDPFGNNLLTVI+G+ ER P+
Sbjct:   223 ILKVKEIKNGRLAMFSMFAFFIQAYVTGEGPVENLAKHLSDPFGNNLLTVISGAAERTPS 282

Query:   133 L 131
             L
Sbjct:   283 L 283

 Score = 185 (65.1 bits), Expect = 1.2e-38, Sum P(2) = 1.2e-38
 Identities = 45/89 (50%), Positives = 50/89 (56%), Frame = -1

Query:   572 KRGENXXSGGFWF*XPGVGFLXGGNXEXIWGNXSHSILXLAVVGEIVXVGGAEYYRIING 393
             K G N      WF   G   L  GN    +GN     L +AV+ E+V VGGAEYYRI NG
Sbjct:   139 KFGANCGPEAVWF-KTGA-LLLDGNTLNYFGNSIPINLVVAVIAEVVLVGGAEYYRITNG 196

Query:   392 LDLEDKFIQVVHXNPLGLAKDPDQAATXK 306
             LDLEDK       +PLGLA DPDQAA  K
Sbjct:   197 LDLEDKLHPGGPFDPLGLASDPDQAAILK 225

 Score = 39 (13.7 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
 Identities = 10/28 (35%), Positives = 12/28 (42%), Frame = -2

Query:   550 PGVFGFKXRGLVFWXGETXKXFGETXPI 467
             P    FK  G +   G T   FG + PI
Sbjct:   146 PEAVWFKT-GALLLDGNTLNYFGNSIPI 172


 >gi|100573|pir||S21386  chlorophyll a/b-binding protein CP29 precursor - barley
            >gi|18958|emb|CAA44777.1| (X63052) Precursor of CP29, core
            chlorophyll a/b  binding (CAB) protein of photosystem II (PSII)
            [Hordeum vulgare] >gi|445122|prf||1908428A chlorophyll a/b-binding
            protein [Hordeum vulgare]
            Length = 286

Frame -1 hits (HSPs):                          _________________          
Frame -2 hits (HSPs):                           _______        ___________
Annotated Domains:                      _________________________________ 
                        __________________________________________________
Database sequence:     |        |        |        |       |        |      | 286
                       0       50      100      150     200      250
__________________

Annotated Domains:
   DOMO                 DM00760: CHLOROPHYLLA/B-BINDINGPROTEIN   95..117
   DOMO                 DM00216: CHLOROPHYLLA/B-BINDINGPROTEIN   119..276
__________________


  Minus Strand HSPs:

 Score = 251 (88.4 bits), Expect = 4.0e-38, Sum P(2) = 4.0e-38
 Identities = 48/61 (78%), Positives = 53/61 (86%), Frame = -2

Query:   313 LXKVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGSVERAPT 134
             L KVKEIKNGRLAMF+MLG + QAYVTGEGP ENL  HLSDPFGNNLLTVI+G+ ER P+
Sbjct:   226 LLKVKEIKNGRLAMFSMLGFFIQAYVTGEGPFENLCAHLSDPFGNNLLTVISGAAERVPS 285

Query:   133 L 131
             L
Sbjct:   286 L 286

 Score = 183 (64.4 bits), Expect = 4.0e-38, Sum P(2) = 4.0e-38
 Identities = 48/98 (48%), Positives = 53/98 (54%), Frame = -1

Query:   599 F*FPGALKKKRGENXXSGGFWF*XPGVGFLXGGNXEXIWGNXSHSILXLAVVGEIVXVGG 420
             F  P AL K  G N      WF   G   L  GN    +GN     L LAVV E+V VGG
Sbjct:   134 FIIPEALNKF-GANCGPEAVWF-KTGA-LLLDGNTLNYFGNSIPINLILAVVAEVVLVGG 190

Query:   419 AEYYRIINGLDLEDKFIQVVHXNPLGLAKDPDQAATXK 306
             AEYYRI NGL+ +DK       +PLGLA DPDQAA  K
Sbjct:   191 AEYYRITNGLEFDDKLHPGGPFDPLGLATDPDQAALLK 228

 Score = 40 (14.1 bits), Expect = 3.8e-23, Sum P(2) = 3.8e-23
 Identities = 13/38 (34%), Positives = 16/38 (42%), Frame = -2

Query:   580 LKKRGGKIXVPGVFGFKXRGLVFWXGETXKXFGETXPI 467
             L K G       V+ FK  G +   G T   FG + PI
Sbjct:   140 LNKFGANCGPEAVW-FKT-GALLLDGNTLNYFGNSIPI 175


 >gi|322391|pir||S31865  chlorophyll a/b-binding protein Lhcb5 - Scotch pine
            >gi|22750|emb|CAA78900.1| (Z16408) Lhcb5 protein [Pinus sylvestris]
            >gi|1093837|prf||2104448A Lhcb5 gene [Pinus sylvestris]
            Length = 302

Frame -1 hits (HSPs):                              ______________         
Frame -2 hits (HSPs):                                          ___________
Annotated Domains:                            ___________________________ 
                        __________________________________________________
Database sequence:     |        |       |       |       |        |       || 302
                       0       50     100     150     200      250     300
__________________

Annotated Domains:
   DOMO                 DM00216: CHLOROPHYLLA/B-BINDINGPROTEIN   137..292
__________________


  Minus Strand HSPs:

 Score = 267 (94.0 bits), Expect = 1.2e-36, Sum P(2) = 1.2e-36
 Identities = 51/61 (83%), Positives = 56/61 (91%), Frame = -2

Query:   313 LXKVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGSVERAPT 134
             L KVKEIKNGRLAMF+MLG + QAYVTGEGPVENLA HLSDPFGNN+LTV+ GS+ERAPT
Sbjct:   242 LLKVKEIKNGRLAMFSMLGFFLQAYVTGEGPVENLAAHLSDPFGNNILTVLGGSLERAPT 301

Query:   133 L 131
             L
Sbjct:   302 L 302

 Score = 153 (53.9 bits), Expect = 1.2e-36, Sum P(2) = 1.2e-36
 Identities = 36/78 (46%), Positives = 44/78 (56%), Frame = -1

Query:   539 WF*XPGVGFLXGGNXEXIWGNXSHSILXLAVVGEIVXVGGAEYYRIINGLDLEDKFIQVV 360
             WF   G   L GG       +   +++  AVV E+V VGGAEYYR  NGL+ +DK     
Sbjct:   169 WF-KTGALLLDGGTLSYFGASIPINLIA-AVVAEVVLVGGAEYYRATNGLNFDDKLHPGG 226

Query:   359 HXNPLGLAKDPDQAATXK 306
               +PLGLAKDPDQ A  K
Sbjct:   227 PFDPLGLAKDPDQFALLK 244


 >gi|12060444|dbj|BAB20613.1|  (AB050007) CP26 [Chlamydomonas reinhardtii]
            Length = 289

Frame -1 hits (HSPs):                 ___    ___________     __           
Frame -2 hits (HSPs):                                          ___________
Frame -3 hits (HSPs):                                       __            
                        __________________________________________________
Database sequence:     |        |        |       |        |        |      | 289
                       0       50      100     150      200      250

  Minus Strand HSPs:

 Score = 203 (71.5 bits), Expect = 6.6e-25, Sum P(3) = 6.6e-25
 Identities = 42/63 (66%), Positives = 49/63 (77%), Frame = -2

Query:   319 LQLXKVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNNLLTVIAGSVERA 140
             LQ  KVKEIKNGRLAM ++LG   Q+YVTGEGP  N  KH++DPFG NLLTV+ G+ ER 
Sbjct:   228 LQELKVKEIKNGRLAMVSVLGFAVQSYVTGEGPYANWTKHVADPFGYNLLTVL-GAEERT 286

Query:   139 PTL 131
             PTL
Sbjct:   287 PTL 289

 Score = 69 (24.3 bits), Expect = 6.6e-25, Sum P(3) = 6.6e-25
 Identities = 20/56 (35%), Positives = 26/56 (46%), Frame = -1

Query:   566 GENXXSGGFWF*XPGVGFLXGGNXEXI---WGNXSHSILXLAVVG-EIVXVGGAEYYR 405
             G N   GG WF   G   L GG        WG  S+ +   AV+  E+  +G  E+YR
Sbjct:   128 GANI-KGGTWF-ETGAEMLNGGTLNYFAVPWGIVSNPLPLFAVIAVEVGLMGAVEFYR 183

 Score = 45 (15.8 bits), Expect = 6.6e-25, Sum P(3) = 6.6e-25
 Identities = 6/11 (54%), Positives = 10/11 (90%), Frame = -3

Query:   375 VHPGGPXEPIG 343
             ++PGGP +P+G
Sbjct:   210 LYPGGPFDPLG 220

 Score = 45 (15.8 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
 Identities = 8/13 (61%), Positives = 10/13 (76%), Frame = -1

Query:   353 NPLGLAKDPDQAA 315
             +PLGL KDP+  A
Sbjct:    86 DPLGLGKDPETVA 98

 Score = 40 (14.1 bits), Expect = 2.2e-24, Sum P(3) = 2.2e-24
 Identities = 7/10 (70%), Positives = 9/10 (90%), Frame = -1

Query:   353 NPLGLAKDPD 324
             +PLGLA DP+
Sbjct:   217 DPLGLADDPE 226


 >gi|2407314|gb|AAB70556.1|  (AF017998) chlorophyll a/b binding protein
            [Tetraselmis sp. RG-15]
            Length = 251

Frame -1 hits (HSPs):                      ____________________           
Frame -2 hits (HSPs):                                         __________  
Frame -3 hits (HSPs):                                     ___             
                        __________________________________________________
Database sequence:     |         |         |         |         |         || 251
                       0        50       100       150       200       250

  Minus Strand HSPs:

 Score = 167 (58.8 bits), Expect = 2.5e-20, Sum P(2) = 2.5e-20
 Identities = 31/44 (70%), Positives = 38/44 (86%), Frame = -2

Query:   307 KVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNN 176
             KVKEIKNGRLAMF+M G + QA VTG+GPVEN A+H++DP G+N
Sbjct:   196 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPVENWAEHIADPSGSN 239

 Score = 97 (34.1 bits), Expect = 2.5e-20, Sum P(2) = 2.5e-20
 Identities = 35/97 (36%), Positives = 47/97 (48%), Frame = -1

Query:   590 PGALKKKRGENXXSGGFWF*XPGVGFLXGGNXEXIWGNXS--HSILXLAVVG-EIVXVGG 420
             P  L K  G        WF   G      G  + + GN S  H+   LA++G ++V +GG
Sbjct:   100 PELLSKYAGVEFGEA-VWF-KAGAQIFADGGLDYL-GNSSLVHAQSILAILGCQVVLMGG 156

Query:   419 AEYYRIINGL---DLEDKFIQVVHXNPLGLAKDPDQAATXK 306
             AE +R+  G    DL DK       +PLGLA DPD  +  K
Sbjct:   157 AEAFRVNGGPLGEDL-DKLHPGGAFDPLGLADDPDTFSELK 196

 Score = 44 (15.5 bits), Expect = 8.4e-15, Sum P(2) = 8.4e-15
 Identities = 6/12 (50%), Positives = 10/12 (83%), Frame = -3

Query:   378 QVHPGGPXEPIG 343
             ++HPGG  +P+G
Sbjct:   173 KLHPGGAFDPLG 184


 >gi|2119847|pir||S60270  chlorophyll a/b binding protein precursor - shore pine
            >gi|467794|emb|CAA47950.1| (X67714) chlorophyll a/b binding protein
            [Pinus contorta]
            Length = 274

Frame -1 hits (HSPs):                            _______________          
Frame -2 hits (HSPs):                                          _________  
Frame -3 hits (HSPs):                                      ___            
                        __________________________________________________
Database sequence:     |        |         |        |        |        |    | 274
                       0       50       100      150      200      250

  Minus Strand HSPs:

 Score = 172 (60.5 bits), Expect = 6.5e-19, Sum P(2) = 6.5e-19
 Identities = 32/44 (72%), Positives = 37/44 (84%), Frame = -2

Query:   307 KVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNN 176
             KVKEIKNGRLAMF+M G + QA VTG+GP+ENLA HL+DP  NN
Sbjct:   219 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVSNN 262

 Score = 80 (28.2 bits), Expect = 6.5e-19, Sum P(2) = 6.5e-19
 Identities = 27/81 (33%), Positives = 38/81 (46%), Frame = -1

Query:   539 WF*XPGVGFLXGGNXEXIWGNXS--HSILXLAVVG-EIVXVGGAEYYRIINGL--DLEDK 375
             WF   G      G  + + GN S  H+   LA+   +++ +G  E YRI  G   ++ D 
Sbjct:   139 WF-KAGAQIFSEGGLDYL-GNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDP 196

Query:   374 FIQVVHXNPLGLAKDPDQAATXK 306
                    +PLGLA DPD  A  K
Sbjct:   197 IYPGGSFDPLGLADDPDAFAELK 219

 Score = 39 (13.7 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
 Identities = 5/11 (45%), Positives = 9/11 (81%), Frame = -3

Query:   375 VHPGGPXEPIG 343
             ++PGG  +P+G
Sbjct:   197 IYPGGSFDPLG 207


 >gi|541799|pir||JQ2333  light-harvesting chlorophyll a/b-binding protein -
            ginkgo >gi|349443|gb|AAA60965.1| (L23107) light-harvesting
            chlorophyll a/b binding protein of photosystem II [Ginkgo biloba]
            Length = 270

Frame -1 hits (HSPs):                           ________________          
Frame -2 hits (HSPs):                                          _________  
Frame -3 hits (HSPs):                                      ___            
                        __________________________________________________
Database sequence:     |         |        |        |        |         |   | 270
                       0        50      100      150      200       250

  Minus Strand HSPs:

 Score = 170 (59.8 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
 Identities = 31/44 (70%), Positives = 37/44 (84%), Frame = -2

Query:   307 KVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNN 176
             KVKE+KNGRLAMF+M G + QA VTG+GP+ENLA HL+DP  NN
Sbjct:   215 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 258

 Score = 80 (28.2 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
 Identities = 27/81 (33%), Positives = 38/81 (46%), Frame = -1

Query:   539 WF*XPGVGFLXGGNXEXIWGNXS--HSILXLAVVG-EIVXVGGAEYYRIINGL--DLEDK 375
             WF   G      G  + + GN S  H+   LA+   +++ +G  E YRI  G   ++ D 
Sbjct:   135 WF-KAGSQIFSDGGLDYL-GNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEITDP 192

Query:   374 FIQVVHXNPLGLAKDPDQAATXK 306
                    +PLGLA DPD  A  K
Sbjct:   193 IYPGGSFDPLGLADDPDAFAELK 215

 Score = 39 (13.7 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
 Identities = 5/11 (45%), Positives = 9/11 (81%), Frame = -3

Query:   375 VHPGGPXEPIG 343
             ++PGG  +P+G
Sbjct:   193 IYPGGSFDPLG 203


 >gi|115820|sp|P15194|CB2B_PINSY  CHLOROPHYLL A-B BINDING PROTEIN TYPE II 1B
            PRECURSOR (CAB) (LHCP) >gi|81416|pir||S07999 chlorophyll
            a/b-binding protein II/1B precursor - Scotch pine
            >gi|20665|emb|CAA32658.1| (X14506) chlorophyll a/b-binding protein
            precursor (AA -40 to 234) [Pinus sylvestris]
            Length = 274

Frame -1 hits (HSPs):                            _______________          
Frame -2 hits (HSPs):                                          _________  
Frame -3 hits (HSPs):                                      ___            
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |        |         |        |        |        |    | 274
                       0       50       100      150      200      250
__________________

Annotated Domains:
   Entrez               Transmembrane region: POTENTIAL.         228..244
   PFAM                 chloroa_b-bind: Chlorophyll A-B binding  44..273
   PRODOM               PD008399: CB2A(2)                        1..38
   PRODOM               PD000275: CB21(11) CB23(9) CB22(8)       40..272
__________________


  Minus Strand HSPs:

 Score = 172 (60.5 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
 Identities = 32/44 (72%), Positives = 37/44 (84%), Frame = -2

Query:   307 KVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNN 176
             KVKEIKNGRLAMF+M G + QA VTG+GP+ENLA HL+DP  NN
Sbjct:   219 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 262

 Score = 78 (27.5 bits), Expect = 1.0e-18, Sum P(2) = 1.0e-18
 Identities = 26/81 (32%), Positives = 39/81 (48%), Frame = -1

Query:   539 WF*XPGVGFLXGGNXEXIWGNXS--HSILXLAVVG-EIVXVGGAEYYRIINGL--DLEDK 375
             WF   G      G  + + GN S  H+   LA+   +++ +G  E YRI  G   ++ D 
Sbjct:   139 WF-KAGAQIFSEGGLDYL-GNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDP 196

Query:   374 FIQVVHXNPLGLAKDPDQAATXK 306
                    +PLGLA+DP+  A  K
Sbjct:   197 IYPGGSFDPLGLAEDPEAFAELK 219

 Score = 39 (13.7 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
 Identities = 5/11 (45%), Positives = 9/11 (81%), Frame = -3

Query:   375 VHPGGPXEPIG 343
             ++PGG  +P+G
Sbjct:   197 IYPGGSFDPLG 207


 >gi|556367|gb|AAA50310.1|  (L36064) light-harvesting chlorophyll a/b-binding
            protein [Prunus persica]
            Length = 267

Frame -1 hits (HSPs):                           ________________          
Frame -2 hits (HSPs):                                          _________  
Frame -3 hits (HSPs):                                      ___            
                        __________________________________________________
Database sequence:     |         |        |        |         |        |   | 267
                       0        50      100      150       200      250

  Minus Strand HSPs:

 Score = 170 (59.8 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
 Identities = 31/44 (70%), Positives = 37/44 (84%), Frame = -2

Query:   307 KVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNN 176
             KVKE+KNGRLAMF+M G + QA VTG+GP+ENLA HL+DP  NN
Sbjct:   212 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255

 Score = 79 (27.8 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
 Identities = 25/81 (30%), Positives = 39/81 (48%), Frame = -1

Query:   539 WF*XPGVGFLXGGNXEXIWGNXS--HSILXLAV-VGEIVXVGGAEYYRIINGL--DLEDK 375
             WF   G      G  + + GN S  H+   LA+   +++ +G  E YR+  G   ++ D 
Sbjct:   132 WF-KAGAQIFSEGGLDYL-GNPSLVHAQSILAIWATQVILMGAVEGYRVAGGPLGEITDP 189

Query:   374 FIQVVHXNPLGLAKDPDQAATXK 306
                    +PLGLA+DP+  A  K
Sbjct:   190 LYPGGSFDPLGLAEDPEAFAELK 212

 Score = 37 (13.0 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
 Identities = 5/11 (45%), Positives = 9/11 (81%), Frame = -3

Query:   375 VHPGGPXEPIG 343
             ++PGG  +P+G
Sbjct:   190 LYPGGSFDPLG 200


 >gi|3417451|dbj|BAA32346.1|  (AB013728) light-harvesting chlorophyll a/b-binding
            protein of photosystem II [Cryptomeria japonica]
            Length = 266

Frame -1 hits (HSPs):                           ________________          
Frame -2 hits (HSPs):                                          _________  
Frame -3 hits (HSPs):                                      ___            
                        __________________________________________________
Database sequence:     |         |        |         |        |        |   | 266
                       0        50      100       150      200      250

  Minus Strand HSPs:

 Score = 174 (61.3 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
 Identities = 33/44 (75%), Positives = 37/44 (84%), Frame = -2

Query:   307 KVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNN 176
             KVKEIKNGRLAMF+M G Y QA VTG+GP+ENLA HL+DP  NN
Sbjct:   211 KVKEIKNGRLAMFSMFGFYVQAIVTGKGPLENLADHLADPVNNN 254

 Score = 74 (26.0 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
 Identities = 25/81 (30%), Positives = 38/81 (46%), Frame = -1

Query:   539 WF*XPGVGFLXGGNXEXIWGNXS--HSILXLAVVG-EIVXVGGAEYYRIINGL--DLEDK 375
             WF   G      G  + + GN S  H+   LA+   +++ +G  E YR+  G   ++ D 
Sbjct:   131 WF-KAGSQIFSEGGLDYL-GNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEITDP 188

Query:   374 FIQVVHXNPLGLAKDPDQAATXK 306
                    +PLGLA DP+  A  K
Sbjct:   189 LYPGGSFDPLGLADDPEAFAELK 211

 Score = 37 (13.0 bits), Expect = 8.4e-15, Sum P(2) = 8.4e-15
 Identities = 5/11 (45%), Positives = 9/11 (81%), Frame = -3

Query:   375 VHPGGPXEPIG 343
             ++PGG  +P+G
Sbjct:   189 LYPGGSFDPLG 199


 >gi|8925554|gb|AAF81518.1|AF268320_1  (AF268320) light-harvesting complex
            protein LHCG11 [Chlorarachnion CCMP621]
            Length = 333

Frame -1 hits (HSPs):                                _____________        
Frame -2 hits (HSPs):                                            ________ 
Frame -3 hits (HSPs):                                         __          
                        __________________________________________________
Database sequence:     |                      |                     |     | 333
                       0                    150                   300

  Minus Strand HSPs:

 Score = 172 (60.5 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
 Identities = 34/47 (72%), Positives = 39/47 (82%), Frame = -2

Query:   307 KVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNNLLT 167
             KVKEIKNGRLAMF+MLG Y QA  TG+GPVEN A+H++DP G N LT
Sbjct:   278 KVKEIKNGRLAMFSMLGFYVQAIATGKGPVENWAEHIADPAGVNGLT 324

 Score = 84 (29.6 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
 Identities = 30/81 (37%), Positives = 41/81 (50%), Frame = -1

Query:   539 WF*XPGVGFLXGGNXEXIWGNXS--HSILXLAVVG-EIVXVGGAEYYRIINGLDLE--DK 375
             WF      F  GG  + + GN S  H+   LA++  +++ +GGAE YR+  G   E  D 
Sbjct:   198 WFKAGSQIFAEGG-LDYL-GNPSLVHAQSILAILACQVILMGGAEAYRVNGGPAGEGLDA 255

Query:   374 FIQVVHXNPLGLAKDPDQAATXK 306
                    +PLGLA DPD  A  K
Sbjct:   256 INPGGAFDPLGLADDPDTFAELK 278

 Score = 38 (13.4 bits), Expect = 9.0e-14, Sum P(2) = 9.0e-14
 Identities = 5/11 (45%), Positives = 9/11 (81%), Frame = -3

Query:   375 VHPGGPXEPIG 343
             ++PGG  +P+G
Sbjct:   256 INPGGAFDPLG 266


 >gi|3928140|emb|CAA10284.1|  (AJ131044) chlorophyll a/b binding protein [Cicer
            arietinum]
            Length = 266

Frame -1 hits (HSPs):                           ________________          
Frame -2 hits (HSPs):                                          _________  
Frame -3 hits (HSPs):                                      ___            
                        __________________________________________________
Database sequence:     |         |        |         |        |        |   | 266
                       0        50      100       150      200      250

  Minus Strand HSPs:

 Score = 171 (60.2 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
 Identities = 32/44 (72%), Positives = 37/44 (84%), Frame = -2

Query:   307 KVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNN 176
             KVKE+KNGRLAMF+M G + QA VTG+GP+ENLA HLSDP  NN
Sbjct:   211 KVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 254

 Score = 76 (26.8 bits), Expect = 1.6e-18, Sum P(2) = 1.6e-18
 Identities = 27/81 (33%), Positives = 38/81 (46%), Frame = -1

Query:   539 WF*XPGVGFLXGGNXEXIWGNXS--HSILXLAV-VGEIVXVGGAEYYRIINGL--DLEDK 375
             WF   G      G  + + GN S  H+   LA+   ++V +G  E YRI  G   ++ D 
Sbjct:   131 WF-KAGSQIFSEGGLDYL-GNPSLVHAQSILAIWATQVVLMGAVEGYRIAGGPLGEVTDP 188

Query:   374 FIQVVHXNPLGLAKDPDQAATXK 306
                    +PLGLA DP+  A  K
Sbjct:   189 LYPGGSFDPLGLADDPEAFAELK 211

 Score = 37 (13.0 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
 Identities = 5/11 (45%), Positives = 9/11 (81%), Frame = -3

Query:   375 VHPGGPXEPIG 343
             ++PGG  +P+G
Sbjct:   189 LYPGGSFDPLG 199


 >gi|2196770|gb|AAB61236.1|  (AF003127) chlorophyll a/b-binding protein
            [Mesembryanthemum crystallinum]
            Length = 267

Frame -1 hits (HSPs):                           ________________          
Frame -2 hits (HSPs):                                          _________  
Frame -3 hits (HSPs):                                      ___            
                        __________________________________________________
Database sequence:     |         |        |        |         |        |   | 267
                       0        50      100      150       200      250

  Minus Strand HSPs:

 Score = 170 (59.8 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
 Identities = 32/44 (72%), Positives = 37/44 (84%), Frame = -2

Query:   307 KVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNN 176
             KVKEIKNGRLAMF+M G + QA VTG+GP+ENLA HL+DP  NN
Sbjct:   212 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255

 Score = 77 (27.1 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
 Identities = 26/81 (32%), Positives = 39/81 (48%), Frame = -1

Query:   539 WF*XPGVGFLXGGNXEXIWGNXS--HSILXLAVVG-EIVXVGGAEYYRIINGL--DLEDK 375
             WF   G      G  + + GN S  H+   LA+   ++V +G  E YR+  G   ++ D 
Sbjct:   132 WF-KAGAQIFSEGGLDYL-GNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGPLGEVTDP 189

Query:   374 FIQVVHXNPLGLAKDPDQAATXK 306
                    +PLGLA+DP+  A  K
Sbjct:   190 LYPGGSFDPLGLAEDPEAFAELK 212

 Score = 37 (13.0 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
 Identities = 5/11 (45%), Positives = 9/11 (81%), Frame = -3

Query:   375 VHPGGPXEPIG 343
             ++PGG  +P+G
Sbjct:   190 LYPGGSFDPLG 200


 >gi|1085985|pir||S51657  light harvesting chlorophyll a protein precursor -
            Norway spruce >gi|607150|emb|CAA57408.1| (X81809) light harvesting
            chlorophyll a /b-binding protein Lhcb1*2-1 [Picea abies]
            Length = 274

Frame -1 hits (HSPs):                            _______________          
Frame -2 hits (HSPs):                                          _________  
Frame -3 hits (HSPs):                                      ___            
                        __________________________________________________
Database sequence:     |        |         |        |        |        |    | 274
                       0       50       100      150      200      250

  Minus Strand HSPs:

 Score = 168 (59.1 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
 Identities = 31/44 (70%), Positives = 37/44 (84%), Frame = -2

Query:   307 KVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNN 176
             KVKE+KNGRLAMF+M G + QA VTG+GP+ENLA HL+DP  NN
Sbjct:   219 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVTNN 262

 Score = 81 (28.5 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
 Identities = 27/81 (33%), Positives = 38/81 (46%), Frame = -1

Query:   539 WF*XPGVGFLXGGNXEXIWGNXS--HSILXLAVVG-EIVXVGGAEYYRIINGL--DLEDK 375
             WF   G      G  + + GN S  H+   LA+   +++ +G  E YRI  G   ++ D 
Sbjct:   139 WF-KAGAQIFSEGGLDYL-GNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEITDP 196

Query:   374 FIQVVHXNPLGLAKDPDQAATXK 306
                    +PLGLA DPD  A  K
Sbjct:   197 IYPGGSFDPLGLADDPDAFAELK 219

 Score = 39 (13.7 bits), Expect = 4.1e-14, Sum P(2) = 4.1e-14
 Identities = 5/11 (45%), Positives = 9/11 (81%), Frame = -3

Query:   375 VHPGGPXEPIG 343
             ++PGG  +P+G
Sbjct:   197 IYPGGSFDPLG 207


 >gi|1085986|pir||S51658  light harvesting chlorophyll a protein precursor -
            Norway spruce >gi|607152|emb|CAA57409.1| (X81810) light harvesting
            chlorophyll a /b-binding protein Lhcb1*2-2 [Picea abies]
            Length = 275

Frame -1 hits (HSPs):                            _______________          
Frame -2 hits (HSPs):                                          _________  
Frame -3 hits (HSPs):                                      ___            
                        __________________________________________________
Database sequence:     |        |         |        |        |        |    | 275
                       0       50       100      150      200      250

  Minus Strand HSPs:

 Score = 168 (59.1 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
 Identities = 31/44 (70%), Positives = 37/44 (84%), Frame = -2

Query:   307 KVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNN 176
             KVKE+KNGRLAMF+M G + QA VTG+GP+ENLA HL+DP  NN
Sbjct:   220 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVTNN 263

 Score = 81 (28.5 bits), Expect = 1.8e-18, Sum P(2) = 1.8e-18
 Identities = 27/81 (33%), Positives = 38/81 (46%), Frame = -1

Query:   539 WF*XPGVGFLXGGNXEXIWGNXS--HSILXLAVVG-EIVXVGGAEYYRIINGL--DLEDK 375
             WF   G      G  + + GN S  H+   LA+   +++ +G  E YRI  G   ++ D 
Sbjct:   140 WF-KAGAQIFSEGGLDYL-GNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEITDP 197

Query:   374 FIQVVHXNPLGLAKDPDQAATXK 306
                    +PLGLA DPD  A  K
Sbjct:   198 IYPGGSFDPLGLADDPDAFAELK 220

 Score = 39 (13.7 bits), Expect = 4.3e-14, Sum P(2) = 4.3e-14
 Identities = 5/11 (45%), Positives = 9/11 (81%), Frame = -3

Query:   375 VHPGGPXEPIG 343
             ++PGG  +P+G
Sbjct:   198 IYPGGSFDPLG 208


 >gi|8925556|gb|AAF81519.1|AF268321_1  (AF268321) light-harvesting complex
            protein LHCG12 [Chlorarachnion CCMP621]
            Length = 346

Frame -1 hits (HSPs):                                 ____________        
Frame -2 hits (HSPs):                                            ________ 
Frame -3 hits (HSPs):                                         ___         
                        __________________________________________________
Database sequence:     |                     |                     |      | 346
                       0                   150                   300

  Minus Strand HSPs:

 Score = 172 (60.5 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
 Identities = 34/47 (72%), Positives = 39/47 (82%), Frame = -2

Query:   307 KVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNNLLT 167
             KVKEIKNGRLAMF+MLG Y QA  TG+GPVEN A+H++DP G N LT
Sbjct:   291 KVKEIKNGRLAMFSMLGFYVQAIATGKGPVENWAEHIADPAGVNGLT 337

 Score = 84 (29.6 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
 Identities = 30/81 (37%), Positives = 41/81 (50%), Frame = -1

Query:   539 WF*XPGVGFLXGGNXEXIWGNXS--HSILXLAVVG-EIVXVGGAEYYRIINGLDLE--DK 375
             WF      F  GG  + + GN S  H+   LA++  +++ +GGAE YR+  G   E  D 
Sbjct:   211 WFKAGSQIFAEGG-LDYL-GNPSLVHAQSILAILACQVILMGGAEAYRVNGGPAGEGLDA 268

Query:   374 FIQVVHXNPLGLAKDPDQAATXK 306
                    +PLGLA DPD  A  K
Sbjct:   269 INPGGAFDPLGLADDPDTFAELK 291

 Score = 38 (13.4 bits), Expect = 1.1e-13, Sum P(2) = 1.1e-13
 Identities = 5/11 (45%), Positives = 9/11 (81%), Frame = -3

Query:   375 VHPGGPXEPIG 343
             ++PGG  +P+G
Sbjct:   269 INPGGAFDPLG 279


 >gi|421916|pir||S29904  chlorophyll a/b-binding protein - English ivy (fragment)
            >gi|12582|emb|CAA48410.1| (X68333) light harvesting chlorophyll a
            /b binding protein [Hedera helix]
            Length = 193

Frame -1 hits (HSPs):                 ______________________              
Frame -2 hits (HSPs):                                      ____________   
Frame -3 hits (HSPs):                                ____                 
                        __________________________________________________
Database sequence:     |            |            |            |           | 193
                       0           50          100          150

  Minus Strand HSPs:

 Score = 168 (59.1 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
 Identities = 31/44 (70%), Positives = 37/44 (84%), Frame = -2

Query:   307 KVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNN 176
             KVKE+KNGRLAMF+M G + QA VTG+GP+ENLA HL+DP  NN
Sbjct:   138 KVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 181

 Score = 78 (27.5 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
 Identities = 26/81 (32%), Positives = 39/81 (48%), Frame = -1

Query:   539 WF*XPGVGFLXGGNXEXIWGNXS--HSILXLAV-VGEIVXVGGAEYYRIINGL--DLEDK 375
             WF   G      G  + + GN S  H+   LA+   +++ +G  E YRI  G   ++ D 
Sbjct:    58 WF-KAGAQIFSEGGLDYL-GNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP 115

Query:   374 FIQVVHXNPLGLAKDPDQAATXK 306
                    +PLGLA+DP+  A  K
Sbjct:   116 LYPGGSFDPLGLAEDPEAFAELK 138

 Score = 37 (13.0 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
 Identities = 5/11 (45%), Positives = 9/11 (81%), Frame = -3

Query:   375 VHPGGPXEPIG 343
             ++PGG  +P+G
Sbjct:   116 LYPGGSFDPLG 126


 >gi|115819|sp|P07370|CB2B_LYCES  CHLOROPHYLL A-B BINDING PROTEIN 1B PRECURSOR
            (LHCII TYPE I CAB-1B) (LHCP) >gi|72741|pir||CDTO1B chlorophyll
            a/b-binding protein 1B precursor - tomato >gi|170402|gb|AAA34147.1|
            (M14443) chlorophyll a/b-binding protein Cab-1B [Lycopersicon
            esculentum]
            Length = 265

Frame -1 hits (HSPs):                           ________________          
Frame -2 hits (HSPs):                                          _________  
Frame -3 hits (HSPs):                                      ___            
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |         |        |         |        |        |   | 265
                       0        50      100       150      200      250
__________________

Annotated Domains:
   Entrez               Transmembrane region: POTENTIAL.         99..118
   Entrez               Transmembrane region: POTENTIAL.         151..171
   Entrez               Transmembrane region: POTENTIAL.         219..235
   PFAM                 chloroa_b-bind: Chlorophyll A-B binding  35..264
   PRODOM               PD001000: CB21(6) CB22(5) CB23(3)        1..32
   PRODOM               PD000275: CB21(11) CB23(9) CB22(8)       37..263
__________________


  Minus Strand HSPs:

 Score = 170 (59.8 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
 Identities = 32/44 (72%), Positives = 37/44 (84%), Frame = -2

Query:   307 KVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNN 176
             KVKEIKNGRLAMF+M G + QA VTG+GP+ENLA HL+DP  NN
Sbjct:   210 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253

 Score = 76 (26.8 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
 Identities = 27/81 (33%), Positives = 39/81 (48%), Frame = -1

Query:   539 WF*XPGVGFLXGGNXEXIWGNXS--HSILXLAVVG-EIVXVGGAEYYRIINGL--DLEDK 375
             WF   G      G  + + GN S  H+   LA+   ++V +G  E YRI  G   ++ D 
Sbjct:   130 WF-KAGSQIFSEGGLDYL-GNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP 187

Query:   374 FIQVVHXNPLGLAKDPDQAATXK 306
                    +PLGLA+DP+  A  K
Sbjct:   188 LYPGGSFDPLGLAEDPEAFAELK 210

 Score = 37 (13.0 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
 Identities = 5/11 (45%), Positives = 9/11 (81%), Frame = -3

Query:   375 VHPGGPXEPIG 343
             ++PGG  +P+G
Sbjct:   188 LYPGGSFDPLG 198


 >gi|224927|prf||1204205B  protein 1B,chlorophyll binding [Lycopersicon
            esculentum]
            Length = 265

Frame -1 hits (HSPs):                           ________________          
Frame -2 hits (HSPs):                                          _________  
Frame -3 hits (HSPs):                                      ___            
                        __________________________________________________
Database sequence:     |         |        |         |        |        |   | 265
                       0        50      100       150      200      250

  Minus Strand HSPs:

 Score = 170 (59.8 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
 Identities = 32/44 (72%), Positives = 37/44 (84%), Frame = -2

Query:   307 KVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNN 176
             KVKEIKNGRLAMF+M G + QA VTG+GP+ENLA HL+DP  NN
Sbjct:   210 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253

 Score = 76 (26.8 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
 Identities = 27/81 (33%), Positives = 39/81 (48%), Frame = -1

Query:   539 WF*XPGVGFLXGGNXEXIWGNXS--HSILXLAVVG-EIVXVGGAEYYRIINGL--DLEDK 375
             WF   G      G  + + GN S  H+   LA+   ++V +G  E YRI  G   ++ D 
Sbjct:   130 WF-KAGSQIFSQGGLDYL-GNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP 187

Query:   374 FIQVVHXNPLGLAKDPDQAATXK 306
                    +PLGLA+DP+  A  K
Sbjct:   188 LYPGGSFDPLGLAEDPEAFAELK 210

 Score = 37 (13.0 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
 Identities = 5/11 (45%), Positives = 9/11 (81%), Frame = -3

Query:   375 VHPGGPXEPIG 343
             ++PGG  +P+G
Sbjct:   188 LYPGGSFDPLG 198


 >gi|693916|gb|AAA80591.1|  (U21111) chlorophyll a/b binding protein [Solanum
            tuberosum]
            Length = 265

Frame -1 hits (HSPs):                           ________________          
Frame -2 hits (HSPs):                                          _________  
Frame -3 hits (HSPs):                                      ___            
                        __________________________________________________
Database sequence:     |         |        |         |        |        |   | 265
                       0        50      100       150      200      250

  Minus Strand HSPs:

 Score = 170 (59.8 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
 Identities = 32/44 (72%), Positives = 37/44 (84%), Frame = -2

Query:   307 KVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNN 176
             KVKEIKNGRLAMF+M G + QA VTG+GP+ENLA HL+DP  NN
Sbjct:   210 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253

 Score = 76 (26.8 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
 Identities = 27/81 (33%), Positives = 39/81 (48%), Frame = -1

Query:   539 WF*XPGVGFLXGGNXEXIWGNXS--HSILXLAVVG-EIVXVGGAEYYRIINGL--DLEDK 375
             WF   G      G  + + GN S  H+   LA+   ++V +G  E YRI  G   ++ D 
Sbjct:   130 WF-KAGSQIFSEGGLDYL-GNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP 187

Query:   374 FIQVVHXNPLGLAKDPDQAATXK 306
                    +PLGLA+DP+  A  K
Sbjct:   188 LYPGGSFDPLGLAEDPEAFAELK 210

 Score = 37 (13.0 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
 Identities = 5/11 (45%), Positives = 9/11 (81%), Frame = -3

Query:   375 VHPGGPXEPIG 343
             ++PGG  +P+G
Sbjct:   188 LYPGGSFDPLG 198


 >gi|693922|gb|AAA80594.1|  (U21114) chlorophyll a/b binding protein [Solanum
            tuberosum]
            Length = 265

Frame -1 hits (HSPs):                           ________________          
Frame -2 hits (HSPs):                                          _________  
Frame -3 hits (HSPs):                                      ___            
                        __________________________________________________
Database sequence:     |         |        |         |        |        |   | 265
                       0        50      100       150      200      250

  Minus Strand HSPs:

 Score = 170 (59.8 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
 Identities = 32/44 (72%), Positives = 37/44 (84%), Frame = -2

Query:   307 KVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNN 176
             KVKEIKNGRLAMF+M G + QA VTG+GP+ENLA HL+DP  NN
Sbjct:   210 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253

 Score = 76 (26.8 bits), Expect = 2.0e-18, Sum P(2) = 2.0e-18
 Identities = 27/81 (33%), Positives = 39/81 (48%), Frame = -1

Query:   539 WF*XPGVGFLXGGNXEXIWGNXS--HSILXLAVVG-EIVXVGGAEYYRIINGL--DLEDK 375
             WF   G      G  + + GN S  H+   LA+   ++V +G  E YRI  G   ++ D 
Sbjct:   130 WF-KAGSQIFSEGGLDYL-GNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP 187

Query:   374 FIQVVHXNPLGLAKDPDQAATXK 306
                    +PLGLA+DP+  A  K
Sbjct:   188 LYPGGSFDPLGLAEDPEAFAELK 210

 Score = 37 (13.0 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
 Identities = 5/11 (45%), Positives = 9/11 (81%), Frame = -3

Query:   375 VHPGGPXEPIG 343
             ++PGG  +P+G
Sbjct:   188 LYPGGSFDPLG 198


 >gi|115798|sp|P04781|CB23_PETSP  CHLOROPHYLL A-B BINDING PROTEIN 22R PRECURSOR
            (LHCII TYPE I CAB-22R) (LHCP) >gi|72733|pir||CDPJ2R chlorophyll
            a/b-binding protein 22R precursor - petunia
            >gi|20479|emb|CAA26213.1| (X02360) cab 22R precursor polypeptide
            (aa -34 to 233) [Petunia sp.]
            Length = 267

Frame -1 hits (HSPs):                           ________________          
Frame -2 hits (HSPs):                                          _________  
Frame -3 hits (HSPs):                                      ___            
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |         |        |        |         |        |   | 267
                       0        50      100      150       200      250
__________________

Annotated Domains:
   Entrez               Transmembrane region: POTENTIAL.         101..120
   Entrez               Transmembrane region: POTENTIAL.         153..173
   Entrez               Transmembrane region: POTENTIAL.         221..237
   PFAM                 chloroa_b-bind: Chlorophyll A-B binding  35..266
   PRODOM               PD001000: CB21(6) CB22(5) CB23(3)        1..32
   PRODOM               PD000275: CB21(11) CB23(9) CB22(8)       36..265
__________________


  Minus Strand HSPs:

 Score = 170 (59.8 bits), Expect = 2.2e-18, Sum P(2) = 2.2e-18
 Identities = 32/44 (72%), Positives = 37/44 (84%), Frame = -2

Query:   307 KVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNN 176
             KVKEIKNGRLAMF+M G + QA VTG+GP+ENLA HL+DP  NN
Sbjct:   212 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255

 Score = 76 (26.8 bits), Expect = 2.2e-18, Sum P(2) = 2.2e-18
 Identities = 26/81 (32%), Positives = 39/81 (48%), Frame = -1

Query:   539 WF*XPGVGFLXGGNXEXIWGNXS--HSILXLAVVG-EIVXVGGAEYYRIINGL--DLEDK 375
             WF   G      G  + + GN S  H+   LA+   ++V +G  E YR+  G   ++ D 
Sbjct:   132 WF-KAGAQIFSEGGLDYL-GNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVIDP 189

Query:   374 FIQVVHXNPLGLAKDPDQAATXK 306
                    +PLGLA+DP+  A  K
Sbjct:   190 LYPGGSFDPLGLAEDPEAFAELK 212

 Score = 37 (13.0 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
 Identities = 5/11 (45%), Positives = 9/11 (81%), Frame = -3

Query:   375 VHPGGPXEPIG 343
             ++PGG  +P+G
Sbjct:   190 LYPGGSFDPLG 200


 >gi|2196772|gb|AAB61237.1|  (AF003128) chlorophyll a/b-binding protein
            [Mesembryanthemum crystallinum]
            Length = 267

Frame -1 hits (HSPs):                           ________________          
Frame -2 hits (HSPs):                                          _________  
Frame -3 hits (HSPs):                                      ___            
                        __________________________________________________
Database sequence:     |         |        |        |         |        |   | 267
                       0        50      100      150       200      250

  Minus Strand HSPs:

 Score = 170 (59.8 bits), Expect = 2.2e-18, Sum P(2) = 2.2e-18
 Identities = 32/44 (72%), Positives = 37/44 (84%), Frame = -2

Query:   307 KVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNN 176
             KVKEIKNGRLAMF+M G + QA VTG+GP+ENLA HL+DP  NN
Sbjct:   212 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255

 Score = 76 (26.8 bits), Expect = 2.2e-18, Sum P(2) = 2.2e-18
 Identities = 25/81 (30%), Positives = 39/81 (48%), Frame = -1

Query:   539 WF*XPGVGFLXGGNXEXIWGNXS--HSILXLAVVG-EIVXVGGAEYYRIINGL--DLEDK 375
             WF   G      G  + + GN S  H+   LA+   +++ +G  E YR+  G   ++ D 
Sbjct:   132 WF-KAGAQIFSEGGLDYL-GNPSLVHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDP 189

Query:   374 FIQVVHXNPLGLAKDPDQAATXK 306
                    +PLGLA+DP+  A  K
Sbjct:   190 LYPGGSFDPLGLAEDPEAFAELK 212

 Score = 37 (13.0 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
 Identities = 5/11 (45%), Positives = 9/11 (81%), Frame = -3

Query:   375 VHPGGPXEPIG 343
             ++PGG  +P+G
Sbjct:   190 LYPGGSFDPLG 200


 >gi|1769849|emb|CAA99993.1|  (Z75663) chlorophyll a/b binding protein [Apium
            graveolens]
            Length = 264

Frame -1 hits (HSPs):                           ________________          
Frame -2 hits (HSPs):                                          _________  
Frame -3 hits (HSPs):                                      ___            
                        __________________________________________________
Database sequence:     |         |        |         |        |         |  | 264
                       0        50      100       150      200       250

  Minus Strand HSPs:

 Score = 168 (59.1 bits), Expect = 2.2e-18, Sum P(2) = 2.2e-18
 Identities = 31/44 (70%), Positives = 37/44 (84%), Frame = -2

Query:   307 KVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNN 176
             KVKE+KNGRLAMF+M G + QA VTG+GP+ENLA HL+DP  NN
Sbjct:   209 KVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252

 Score = 78 (27.5 bits), Expect = 2.2e-18, Sum P(2) = 2.2e-18
 Identities = 24/81 (29%), Positives = 41/81 (50%), Frame = -1

Query:   539 WF*XPGVGFLXGGNXEXIWGNXS--HSILXLAV-VGEIVXVGGAEYYRIINGL--DLEDK 375
             WF   G      G  + + GN S  H+   L++   +++ +G  E YR+  G   ++ D 
Sbjct:   129 WF-KAGSQIFSEGGLDYL-GNPSLVHAQSILSIWATQVILMGAVEGYRVAGGPLGEIVDP 186

Query:   374 FIQVVHXNPLGLAKDPDQAATXK 306
                    +PLGLA+DP+++A  K
Sbjct:   187 LYPGGSFDPLGLAEDPERSAELK 209

 Score = 37 (13.0 bits), Expect = 4.1e-14, Sum P(2) = 4.1e-14
 Identities = 5/11 (45%), Positives = 9/11 (81%), Frame = -3

Query:   375 VHPGGPXEPIG 343
             ++PGG  +P+G
Sbjct:   187 LYPGGSFDPLG 197


 >gi|688315|gb|AAC78690.1|  (S73603) chlorophyll a/b-binding protein; LHCPII
            [Pinus thunbergii]
            Length = 274

Frame -1 hits (HSPs):                            _______________          
Frame -2 hits (HSPs):                                          _________  
Frame -3 hits (HSPs):                                      ___            
                        __________________________________________________
Database sequence:     |        |         |        |        |        |    | 274
                       0       50       100      150      200      250

  Minus Strand HSPs:

 Score = 168 (59.1 bits), Expect = 2.2e-18, Sum P(2) = 2.2e-18
 Identities = 31/44 (70%), Positives = 36/44 (81%), Frame = -2

Query:   307 KVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNN 176
             KVKEIKNGRLAMF+M G + QA VTG+GP+ENL  HL+DP  NN
Sbjct:   219 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLTDHLADPVNNN 262

 Score = 80 (28.2 bits), Expect = 2.2e-18, Sum P(2) = 2.2e-18
 Identities = 27/81 (33%), Positives = 38/81 (46%), Frame = -1

Query:   539 WF*XPGVGFLXGGNXEXIWGNXS--HSILXLAVVG-EIVXVGGAEYYRIINGL--DLEDK 375
             WF   G      G  + + GN S  H+   LA+   +++ +G  E YRI  G   ++ D 
Sbjct:   139 WF-KAGAQIFSEGGLDYL-GNPSLVHAQSILAIWACQVILMGAVEGYRIAGGPLGEVTDP 196

Query:   374 FIQVVHXNPLGLAKDPDQAATXK 306
                    +PLGLA DPD  A  K
Sbjct:   197 IYPGGSFDPLGLADDPDAFAELK 219

 Score = 39 (13.7 bits), Expect = 4.1e-14, Sum P(2) = 4.1e-14
 Identities = 5/11 (45%), Positives = 9/11 (81%), Frame = -3

Query:   375 VHPGGPXEPIG 343
             ++PGG  +P+G
Sbjct:   197 IYPGGSFDPLG 207


 >gi|16374|emb|CAA27542.1|  (X03908) chlorophyll a/b binding protein (LHCP AB
            180) [Arabidopsis thaliana]
            Length = 233

Frame -1 hits (HSPs):                       __________________            
Frame -2 hits (HSPs):                                        ___________  
Frame -3 hits (HSPs):                                    ___              
                        __________________________________________________
Database sequence:     |          |          |         |          |       | 233
                       0         50        100       150        200

  Minus Strand HSPs:

 Score = 170 (59.8 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
 Identities = 31/44 (70%), Positives = 37/44 (84%), Frame = -2

Query:   307 KVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNN 176
             KVKE+KNGRLAMF+M G + QA VTG+GP+ENLA HL+DP  NN
Sbjct:   178 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 221

 Score = 75 (26.4 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
 Identities = 27/82 (32%), Positives = 39/82 (47%), Frame = -1

Query:   539 WF*XPGVGFLXGGNXEXIWGNXS--HSILXLAV-VGEIVXVGGAEYYRII-NGL--DLED 378
             WF   G      G  + + GN S  H+   LA+   +++ +G  E YR+  NG   + ED
Sbjct:    97 WF-KAGSQIFSDGGLDYL-GNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAED 154

Query:   377 KFIQVVHXNPLGLAKDPDQAATXK 306
                     +PLGLA DP+  A  K
Sbjct:   155 LLYPGGSFDPLGLATDPEAFAELK 178

 Score = 37 (13.0 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
 Identities = 5/11 (45%), Positives = 9/11 (81%), Frame = -3

Query:   375 VHPGGPXEPIG 343
             ++PGG  +P+G
Sbjct:   156 LYPGGSFDPLG 166


 >gi|12324161|gb|AAG52048.1|AC022455_2  (AC022455) chlorophyll A-B-binding
            protein 2 precursor, 5' partial; 1-750 [Arabidopsis thaliana]
            Length = 249

Frame -1 hits (HSPs):                         _________________           
Frame -2 hits (HSPs):                                         __________  
Frame -3 hits (HSPs):                                     ___             
                        __________________________________________________
Database sequence:     |         |         |         |         |          | 249
                       0        50       100       150       200

  Minus Strand HSPs:

 Score = 170 (59.8 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
 Identities = 31/44 (70%), Positives = 37/44 (84%), Frame = -2

Query:   307 KVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNN 176
             KVKE+KNGRLAMF+M G + QA VTG+GP+ENLA HL+DP  NN
Sbjct:   194 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 237

 Score = 75 (26.4 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
 Identities = 27/82 (32%), Positives = 39/82 (47%), Frame = -1

Query:   539 WF*XPGVGFLXGGNXEXIWGNXS--HSILXLAV-VGEIVXVGGAEYYRII-NGL--DLED 378
             WF   G      G  + + GN S  H+   LA+   +++ +G  E YR+  NG   + ED
Sbjct:   113 WF-KAGSQIFSDGGLDYL-GNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAED 170

Query:   377 KFIQVVHXNPLGLAKDPDQAATXK 306
                     +PLGLA DP+  A  K
Sbjct:   171 LLYPGGSFDPLGLATDPEAFAELK 194

 Score = 37 (13.0 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
 Identities = 5/11 (45%), Positives = 9/11 (81%), Frame = -3

Query:   375 VHPGGPXEPIG 343
             ++PGG  +P+G
Sbjct:   172 LYPGGSFDPLG 182


 >gi|8925552|gb|AAF81517.1|AF268319_1  (AF268319) light-harvesting complex
            protein LHCG4 [Chlorarachnion CCMP621]
            Length = 345

Frame -1 hits (HSPs):                                 ____________        
Frame -2 hits (HSPs):                                            ________ 
Frame -3 hits (HSPs):                                         ___         
                        __________________________________________________
Database sequence:     |                     |                     |      | 345
                       0                   150                   300

  Minus Strand HSPs:

 Score = 171 (60.2 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
 Identities = 34/48 (70%), Positives = 40/48 (83%), Frame = -2

Query:   307 KVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNNLLTV 164
             KVKEIKNGRLAMF+MLG Y QA  TG+GPVEN A+H++DP G N LT+
Sbjct:   290 KVKEIKNGRLAMFSMLGFYVQAISTGKGPVENWAEHIADPSGVNGLTL 337

 Score = 84 (29.6 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
 Identities = 30/81 (37%), Positives = 41/81 (50%), Frame = -1

Query:   539 WF*XPGVGFLXGGNXEXIWGNXS--HSILXLAVVG-EIVXVGGAEYYRIINGLDLE--DK 375
             WF      F  GG  + + GN S  H+   LA++  +++ +GGAE YR+  G   E  D 
Sbjct:   210 WFKAGSQIFAEGG-LDYL-GNPSLVHAQSILAILACQVILMGGAEAYRVNGGPAGEGLDA 267

Query:   374 FIQVVHXNPLGLAKDPDQAATXK 306
                    +PLGLA DPD  A  K
Sbjct:   268 INPGGAFDPLGLADDPDTFAELK 290

 Score = 38 (13.4 bits), Expect = 1.5e-13, Sum P(2) = 1.5e-13
 Identities = 5/11 (45%), Positives = 9/11 (81%), Frame = -3

Query:   375 VHPGGPXEPIG 343
             ++PGG  +P+G
Sbjct:   268 INPGGAFDPLG 278


 >gi|115781|sp|P27492|CB21_TOBAC  CHLOROPHYLL A-B BINDING PROTEIN 16 PRECURSOR
            (LHCII TYPE I CAB-16) (LHCP) >gi|72738|pir||CDNT16 chlorophyll
            a/b-binding protein precursor (cab-16) - common tobacco
            >gi|19819|emb|CAA36955.1| (X52741) Cab16 protein precursor
            [Nicotiana tabacum]
            Length = 266

Frame -1 hits (HSPs):                           ________________          
Frame -2 hits (HSPs):                                          _________  
Frame -3 hits (HSPs):                                      ___            
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |         |        |         |        |        |   | 266
                       0        50      100       150      200      250
__________________

Annotated Domains:
   Entrez               Transmembrane region: POTENTIAL.         100..119
   Entrez               Transmembrane region: POTENTIAL.         152..172
   Entrez               Transmembrane region: POTENTIAL.         220..236
   PFAM                 chloroa_b-bind: Chlorophyll A-B binding  34..265
   PRODOM               PD001000: CB21(6) CB22(5) CB23(3)        1..31
   PRODOM               PD000275: CB21(11) CB23(9) CB22(8)       35..264
__________________


  Minus Strand HSPs:

 Score = 170 (59.8 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
 Identities = 32/44 (72%), Positives = 37/44 (84%), Frame = -2

Query:   307 KVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNN 176
             KVKEIKNGRLAMF+M G + QA VTG+GP+ENLA HL+DP  NN
Sbjct:   211 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254

 Score = 75 (26.4 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
 Identities = 26/81 (32%), Positives = 39/81 (48%), Frame = -1

Query:   539 WF*XPGVGFLXGGNXEXIWGNXS--HSILXLAVVG-EIVXVGGAEYYRIINGL--DLEDK 375
             WF   G      G  + + GN S  H+   LA+   ++V +G  E YR+  G   ++ D 
Sbjct:   131 WF-KAGSQIFSEGGLDYL-GNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP 188

Query:   374 FIQVVHXNPLGLAKDPDQAATXK 306
                    +PLGLA+DP+  A  K
Sbjct:   189 LYPGGSFDPLGLAEDPEAFAELK 211

 Score = 37 (13.0 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
 Identities = 5/11 (45%), Positives = 9/11 (81%), Frame = -3

Query:   375 VHPGGPXEPIG 343
             ++PGG  +P+G
Sbjct:   189 LYPGGSFDPLG 199


 >gi|4757371|dbj|BAA77273.1|  (AB026686) chlorophyll a/b-binding protein
            precursor [Physcomitrella patens]
            Length = 268

Frame -1 hits (HSPs):                           ________________          
Frame -2 hits (HSPs):                                          _________  
                        __________________________________________________
Database sequence:     |         |        |        |         |        |   | 268
                       0        50      100      150       200      250

  Minus Strand HSPs:

 Score = 164 (57.7 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
 Identities = 31/44 (70%), Positives = 36/44 (81%), Frame = -2

Query:   307 KVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNN 176
             KVKEIKNGRLAMF+M G + QA VTG+GP+ENL  HL+DP  NN
Sbjct:   213 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANN 256

 Score = 83 (29.2 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
 Identities = 27/81 (33%), Positives = 38/81 (46%), Frame = -1

Query:   539 WF*XPGVGFLXGGNXEXIWGNXS--HSILXLAVVG-EIVXVGGAEYYRIINGL--DLEDK 375
             WF   G      G  + + GN S  H+   LA+   +++ +G  E YR+  G   D+ D 
Sbjct:   133 WF-KAGAQIFSEGGLDYL-GNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGDVTDP 190

Query:   374 FIQVVHXNPLGLAKDPDQAATXK 306
                    +PLGLA DPD  A  K
Sbjct:   191 IYPGGSFDPLGLADDPDTFAELK 213


 >gi|115814|sp|P27490|CB28_PEA  CHLOROPHYLL A-B BINDING PROTEIN 8 PRECURSOR
            (LHCII TYPE I CAB-8) >gi|72746|pir||CDPMI8 chlorophyll a/b-binding
            protein type I precursor (cab-8) - garden pea
            >gi|20669|emb|CAA39883.1| (X56538) chlorophyll a/b binding  protein
            [Pisum sativum]
            Length = 268

Frame -1 hits (HSPs):                           ________________          
Frame -2 hits (HSPs):                                          _________  
Frame -3 hits (HSPs):                                      ___            
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |         |        |        |         |        |   | 268
                       0        50      100      150       200      250
__________________

Annotated Domains:
   Entrez               Transmembrane region: POTENTIAL.         102..121
   Entrez               Transmembrane region: POTENTIAL.         154..174
   Entrez               Transmembrane region: POTENTIAL.         222..238
   PFAM                 chloroa_b-bind: Chlorophyll A-B binding  36..267
   PRODOM               PD001000: CB21(6) CB22(5) CB23(3)        1..30
   PRODOM               PD000275: CB21(11) CB23(9) CB22(8)       37..266
__________________


  Minus Strand HSPs:

 Score = 171 (60.2 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
 Identities = 32/44 (72%), Positives = 37/44 (84%), Frame = -2

Query:   307 KVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNN 176
             KVKE+KNGRLAMF+M G + QA VTG+GP+ENLA HLSDP  NN
Sbjct:   213 KVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNN 256

 Score = 74 (26.0 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
 Identities = 26/81 (32%), Positives = 38/81 (46%), Frame = -1

Query:   539 WF*XPGVGFLXGGNXEXIWGNXS--HSILXLAV-VGEIVXVGGAEYYRIINGL--DLEDK 375
             WF   G      G  + + GN S  H+   LA+   +++ +G  E YRI  G   ++ D 
Sbjct:   133 WF-KAGSQIFSEGGLDYL-GNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDP 190

Query:   374 FIQVVHXNPLGLAKDPDQAATXK 306
                    +PLGLA DP+  A  K
Sbjct:   191 LYPGGSFDPLGLADDPEAFAELK 213

 Score = 37 (13.0 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
 Identities = 5/11 (45%), Positives = 9/11 (81%), Frame = -3

Query:   375 VHPGGPXEPIG 343
             ++PGG  +P+G
Sbjct:   191 LYPGGSFDPLG 201


 >gi|115767|sp|P04777|CB21_ARATH  CHLOROPHYLL A-B BINDING PROTEIN 165/180
            PRECURSOR (LHCII TYPE I CAB-165/180) (LHCP) >gi|81603|pir||A29280
            chlorophyll a/b-binding protein ab165 - Arabidopsis thaliana
            >gi|16368|emb|CAA27540.1| (X03907) chlorophyll a/b binding protein
            (LHCP AB 65) [Arabidopsis thaliana] >gi|16372|emb|CAA27541.1|
            (X03908) chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
            thaliana] >gi|9972354|gb|AAG10604.1|AC008030_4 (AC008030)
            chlorophyll a/b-binding protein [Arabidopsis thaliana]
            >gi|9972355|gb|AAG10605.1|AC008030_5 (AC008030) chlorophyll
            a/b-binding protein [Arabidopsis thaliana]
            Length = 267

Frame -1 hits (HSPs):                           ________________          
Frame -2 hits (HSPs):                                          _________  
Frame -3 hits (HSPs):                                      ___            
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |         |        |        |         |        |   | 267
                       0        50      100      150       200      250
__________________

Annotated Domains:
   DOMO                 DM00760: CHLOROPHYLLA/B-BINDINGPROTEIN   74..96
   DOMO                 DM00216: CHLOROPHYLLA/B-BINDINGPROTEIN   98..260
   Entrez               Transmembrane region: POTENTIAL.         100..119
   Entrez               Transmembrane region: POTENTIAL.         152..172
   Entrez               Transmembrane region: POTENTIAL.         221..237
   PFAM                 chloroa_b-bind: Chlorophyll A-B binding  35..266
   PRODOM               PD001000: CB21(6) CB22(5) CB23(3)        1..32
   PRODOM               PD000275: CB21(11) CB23(9) CB22(8)       37..265
__________________


  Minus Strand HSPs:

 Score = 170 (59.8 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
 Identities = 31/44 (70%), Positives = 37/44 (84%), Frame = -2

Query:   307 KVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNN 176
             KVKE+KNGRLAMF+M G + QA VTG+GP+ENLA HL+DP  NN
Sbjct:   212 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255

 Score = 75 (26.4 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
 Identities = 27/82 (32%), Positives = 39/82 (47%), Frame = -1

Query:   539 WF*XPGVGFLXGGNXEXIWGNXS--HSILXLAV-VGEIVXVGGAEYYRII-NGL--DLED 378
             WF   G      G  + + GN S  H+   LA+   +++ +G  E YR+  NG   + ED
Sbjct:   131 WF-KAGSQIFSDGGLDYL-GNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAED 188

Query:   377 KFIQVVHXNPLGLAKDPDQAATXK 306
                     +PLGLA DP+  A  K
Sbjct:   189 LLYPGGSFDPLGLATDPEAFAELK 212

 Score = 37 (13.0 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
 Identities = 5/11 (45%), Positives = 9/11 (81%), Frame = -3

Query:   375 VHPGGPXEPIG 343
             ++PGG  +P+G
Sbjct:   190 LYPGGSFDPLG 200


 >gi|115783|sp|P04778|CB22_ARATH  CHLOROPHYLL A-B BINDING PROTEIN 2 PRECURSOR
            (LHCII TYPE I CAB-2) (CAB-140) (LHCP) >gi|16376|emb|CAA27543.1|
            (X03909) chlorophyll a/b binding protein (LHCP AB 140) [Arabidopsis
            thaliana] >gi|9972353|gb|AAG10603.1|AC008030_3 (AC008030) Putative
            chlorophyll a/b-binding protein [Arabidopsis thaliana]
            Length = 267

Frame -1 hits (HSPs):                           ________________          
Frame -2 hits (HSPs):                                          _________  
Frame -3 hits (HSPs):                                      ___            
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |         |        |        |         |        |   | 267
                       0        50      100      150       200      250
__________________

Annotated Domains:
   Entrez               Transmembrane region: POTENTIAL.         100..119
   Entrez               Transmembrane region: POTENTIAL.         152..172
   Entrez               Transmembrane region: POTENTIAL.         221..237
   PFAM                 chloroa_b-bind: Chlorophyll A-B binding  35..266
   PRODOM               PD001000: CB21(6) CB22(5) CB23(3)        1..32
   PRODOM               PD000275: CB21(11) CB23(9) CB22(8)       37..265
__________________


  Minus Strand HSPs:

 Score = 170 (59.8 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
 Identities = 31/44 (70%), Positives = 37/44 (84%), Frame = -2

Query:   307 KVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNN 176
             KVKE+KNGRLAMF+M G + QA VTG+GP+ENLA HL+DP  NN
Sbjct:   212 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255

 Score = 75 (26.4 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
 Identities = 27/82 (32%), Positives = 39/82 (47%), Frame = -1

Query:   539 WF*XPGVGFLXGGNXEXIWGNXS--HSILXLAV-VGEIVXVGGAEYYRII-NGL--DLED 378
             WF   G      G  + + GN S  H+   LA+   +++ +G  E YR+  NG   + ED
Sbjct:   131 WF-KAGSQIFSDGGLDYL-GNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLGEAED 188

Query:   377 KFIQVVHXNPLGLAKDPDQAATXK 306
                     +PLGLA DP+  A  K
Sbjct:   189 LLYPGGSFDPLGLATDPEAFAELK 212

 Score = 37 (13.0 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
 Identities = 5/11 (45%), Positives = 9/11 (81%), Frame = -3

Query:   375 VHPGGPXEPIG 343
             ++PGG  +P+G
Sbjct:   190 LYPGGSFDPLG 200


 >gi|115805|sp|P27495|CB24_TOBAC  CHLOROPHYLL A-B BINDING PROTEIN 40 PRECURSOR
            (LHCII TYPE I CAB-40) (LHCP) >gi|72739|pir||CDNT40 chlorophyll
            a/b-binding protein precursor (cab-40) - common tobacco
            >gi|19829|emb|CAA36958.1| (X52744) Cab40 protein precursor
            [Nicotiana tabacum]
            Length = 267

Frame -1 hits (HSPs):                           ________________          
Frame -2 hits (HSPs):                                          _________  
Frame -3 hits (HSPs):                                      ___            
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |         |        |        |         |        |   | 267
                       0        50      100      150       200      250
__________________

Annotated Domains:
   Entrez               Transmembrane region: POTENTIAL.         101..120
   Entrez               Transmembrane region: POTENTIAL.         153..173
   Entrez               Transmembrane region: POTENTIAL.         221..237
   PFAM                 chloroa_b-bind: Chlorophyll A-B binding  35..266
   PRODOM               PD001000: CB21(6) CB22(5) CB23(3)        1..32
   PRODOM               PD000275: CB21(11) CB23(9) CB22(8)       36..265
__________________


  Minus Strand HSPs:

 Score = 170 (59.8 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
 Identities = 32/44 (72%), Positives = 37/44 (84%), Frame = -2

Query:   307 KVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNN 176
             KVKEIKNGRLAMF+M G + QA VTG+GP+ENLA HL+DP  NN
Sbjct:   212 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255

 Score = 75 (26.4 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
 Identities = 26/81 (32%), Positives = 39/81 (48%), Frame = -1

Query:   539 WF*XPGVGFLXGGNXEXIWGNXS--HSILXLAVVG-EIVXVGGAEYYRIINGL--DLEDK 375
             WF   G      G  + + GN S  H+   LA+   ++V +G  E YR+  G   ++ D 
Sbjct:   132 WF-KAGSQIFSEGGLDYL-GNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP 189

Query:   374 FIQVVHXNPLGLAKDPDQAATXK 306
                    +PLGLA+DP+  A  K
Sbjct:   190 LYPGGSFDPLGLAEDPEAFAELK 212

 Score = 37 (13.0 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
 Identities = 5/11 (45%), Positives = 9/11 (81%), Frame = -3

Query:   375 VHPGGPXEPIG 343
             ++PGG  +P+G
Sbjct:   190 LYPGGSFDPLG 200


 >gi|3036948|dbj|BAA25392.1|  (AB012638) light harvesting chlorophyll a/b-binding
            protein [Nicotiana sylvestris]
            Length = 267

Frame -1 hits (HSPs):                           ________________          
Frame -2 hits (HSPs):                                          _________  
Frame -3 hits (HSPs):                                      ___            
                        __________________________________________________
Database sequence:     |         |        |        |         |        |   | 267
                       0        50      100      150       200      250

  Minus Strand HSPs:

 Score = 170 (59.8 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
 Identities = 32/44 (72%), Positives = 37/44 (84%), Frame = -2

Query:   307 KVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNN 176
             KVKEIKNGRLAMF+M G + QA VTG+GP+ENLA HL+DP  NN
Sbjct:   212 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255

 Score = 75 (26.4 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
 Identities = 26/81 (32%), Positives = 39/81 (48%), Frame = -1

Query:   539 WF*XPGVGFLXGGNXEXIWGNXS--HSILXLAVVG-EIVXVGGAEYYRIINGL--DLEDK 375
             WF   G      G  + + GN S  H+   LA+   ++V +G  E YR+  G   ++ D 
Sbjct:   132 WF-KAGSQIFSEGGLDYL-GNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP 189

Query:   374 FIQVVHXNPLGLAKDPDQAATXK 306
                    +PLGLA+DP+  A  K
Sbjct:   190 LYPGGSFDPLGLAEDPEAFAELK 212

 Score = 37 (13.0 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
 Identities = 5/11 (45%), Positives = 9/11 (81%), Frame = -3

Query:   375 VHPGGPXEPIG 343
             ++PGG  +P+G
Sbjct:   190 LYPGGSFDPLG 200


 >gi|3036955|dbj|BAA25396.1|  (AB012641) light harvesting chlorophyll a/b-binding
            protein [Nicotiana sylvestris]
            Length = 267

Frame -1 hits (HSPs):                           ________________          
Frame -2 hits (HSPs):                                          _________  
Frame -3 hits (HSPs):                                      ___            
                        __________________________________________________
Database sequence:     |         |        |        |         |        |   | 267
                       0        50      100      150       200      250

  Minus Strand HSPs:

 Score = 170 (59.8 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
 Identities = 32/44 (72%), Positives = 37/44 (84%), Frame = -2

Query:   307 KVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNN 176
             KVKEIKNGRLAMF+M G + QA VTG+GP+ENLA HL+DP  NN
Sbjct:   212 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 255

 Score = 75 (26.4 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
 Identities = 26/81 (32%), Positives = 39/81 (48%), Frame = -1

Query:   539 WF*XPGVGFLXGGNXEXIWGNXS--HSILXLAVVG-EIVXVGGAEYYRIINGL--DLEDK 375
             WF   G      G  + + GN S  H+   LA+   ++V +G  E YR+  G   ++ D 
Sbjct:   132 WF-KAGSQIFSEGGLDYL-GNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGPLGEVVDP 189

Query:   374 FIQVVHXNPLGLAKDPDQAATXK 306
                    +PLGLA+DP+  A  K
Sbjct:   190 LYPGGSFDPLGLAEDPEAFAELK 212

 Score = 37 (13.0 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
 Identities = 5/11 (45%), Positives = 9/11 (81%), Frame = -3

Query:   375 VHPGGPXEPIG 343
             ++PGG  +P+G
Sbjct:   190 LYPGGSFDPLG 200


 >gi|9587207|gb|AAF89207.1|AF279250_1  (AF279250) LHCII type I chlorophyll
            a/b-binding protein [Vigna radiata]
            Length = 264

Frame -1 hits (HSPs):                           ________________          
Frame -2 hits (HSPs):                                          _________  
Frame -3 hits (HSPs):                                      ___            
                        __________________________________________________
Database sequence:     |         |        |         |        |         |  | 264
                       0        50      100       150      200       250

  Minus Strand HSPs:

 Score = 168 (59.1 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
 Identities = 31/44 (70%), Positives = 37/44 (84%), Frame = -2

Query:   307 KVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNN 176
             KVKE+KNGRLAMF+M G + QA VTG+GP+ENLA HL+DP  NN
Sbjct:   209 KVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 252

 Score = 77 (27.1 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
 Identities = 26/81 (32%), Positives = 38/81 (46%), Frame = -1

Query:   539 WF*XPGVGFLXGGNXEXIWGNXS--HSILXLAV-VGEIVXVGGAEYYRIINGL--DLEDK 375
             WF   G      G  + + GN S  H+   LA+   +++ +G  E YRI  G   ++ D 
Sbjct:   129 WF-KAGSQIFSEGGLDYL-GNPSLIHAQSILAIWASQVILMGAVEGYRIAGGPLGEVTDP 186

Query:   374 FIQVVHXNPLGLAKDPDQAATXK 306
                    +PLGLA DP+  A  K
Sbjct:   187 IYPGGSFDPLGLADDPEAFAELK 209

 Score = 39 (13.7 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
 Identities = 5/11 (45%), Positives = 9/11 (81%), Frame = -3

Query:   375 VHPGGPXEPIG 343
             ++PGG  +P+G
Sbjct:   187 IYPGGSFDPLG 197


 >gi|2804572|dbj|BAA24493.1|  (AB006081) chlorophyll a/b-binding protein [Fagus
            crenata]
            Length = 264

Frame -1 hits (HSPs):                           ________________          
Frame -2 hits (HSPs):                                          _________  
Frame -3 hits (HSPs):                                      ___            
                        __________________________________________________
Database sequence:     |         |        |         |        |         |  | 264
                       0        50      100       150      200       250

  Minus Strand HSPs:

 Score = 168 (59.1 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
 Identities = 31/44 (70%), Positives = 37/44 (84%), Frame = -2

Query:   307 KVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNN 176
             KVKE+KNGRLAMF+M G + QA VTG+GP+ENLA HL+DP  NN
Sbjct:   209 KVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVTNN 252

 Score = 77 (27.1 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
 Identities = 26/81 (32%), Positives = 38/81 (46%), Frame = -1

Query:   539 WF*XPGVGFLXGGNXEXIWGNXS--HSILXLAV-VGEIVXVGGAEYYRIINGL--DLEDK 375
             WF   G      G  + + GN S  H+   LA+   +++ +G  E YRI  G   ++ D 
Sbjct:   129 WF-KAGAQIFSEGGLDYL-GNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDP 186

Query:   374 FIQVVHXNPLGLAKDPDQAATXK 306
                    +PLGLA DP+  A  K
Sbjct:   187 LYPGGSFDPLGLADDPEAFAELK 209

 Score = 37 (13.0 bits), Expect = 4.1e-14, Sum P(2) = 4.1e-14
 Identities = 5/11 (45%), Positives = 9/11 (81%), Frame = -3

Query:   375 VHPGGPXEPIG 343
             ++PGG  +P+G
Sbjct:   187 LYPGGSFDPLG 197


 >gi|99489|pir||S15912  chlorophyll a/b-binding protein II/1A precursor - Scotch
            pine
            Length = 234

Frame -1 hits (HSPs):                       ___________________           
Frame -2 hits (HSPs):                                         __________  
Frame -3 hits (HSPs):                                    ___              
                        __________________________________________________
Database sequence:     |          |          |         |          |       | 234
                       0         50        100       150        200

  Minus Strand HSPs:

 Score = 172 (60.5 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
 Identities = 32/44 (72%), Positives = 37/44 (84%), Frame = -2

Query:   307 KVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNN 176
             KVKEIKNGRLAMF+M G + QA VTG+GP+ENLA HL+DP  NN
Sbjct:   179 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 222

 Score = 72 (25.3 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
 Identities = 23/81 (28%), Positives = 36/81 (44%), Frame = -1

Query:   539 WF*XPGVGFLXGGNXEXIWG-NXSHSILXLAVVG-EIVXVGGAEYYRIINGL--DLEDKF 372
             WF   G      G  + +      H+   LA+   +++ +G  E YR+  G   ++ D  
Sbjct:    99 WF-KAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVAGGPLGEVTDPI 157

Query:   371 IQVVHXNPLGLAKDPDQAATXK 306
                 + +PLGLA DPD  A  K
Sbjct:   158 YPGGNFDPLGLADDPDAFAELK 179

 Score = 38 (13.4 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
 Identities = 5/11 (45%), Positives = 9/11 (81%), Frame = -3

Query:   375 VHPGGPXEPIG 343
             ++PGG  +P+G
Sbjct:   157 IYPGGNFDPLG 167


 >gi|115787|sp|P12331|CB22_ORYSA  CHLOROPHYLL A-B BINDING PROTEIN 2 PRECURSOR
            (LHCII TYPE I CAB-2) (LHCP) >gi|82461|pir||S03706 chlorophyll
            a/b-binding protein 2R precursor - rice >gi|20182|emb|CAA32109.1|
            (X13909) chlorophyll a/b-binding preprotein (AA -28 to 235) [Oryza
            sativa]
            Length = 263

Frame -1 hits (HSPs):                           ________________          
Frame -2 hits (HSPs):                                          _________  
Frame -3 hits (HSPs):                                      ___            
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |         |        |         |        |         |  | 263
                       0        50      100       150      200       250
__________________

Annotated Domains:
   Entrez               Transmembrane region: POTENTIAL.         97..116
   Entrez               Transmembrane region: POTENTIAL.         149..169
   Entrez               Transmembrane region: POTENTIAL.         217..233
   PFAM                 chloroa_b-bind: Chlorophyll A-B binding  29..262
   PRODOM               PD161113: CB22_ORYSA                     1..29
   PRODOM               PD000275: CB21(11) CB23(9) CB22(8)       31..261
__________________


  Minus Strand HSPs:

 Score = 170 (59.8 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
 Identities = 32/44 (72%), Positives = 37/44 (84%), Frame = -2

Query:   307 KVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNN 176
             KVKEIKNGRLAMF+M G + QA VTG+GP+ENLA HL+DP  NN
Sbjct:   208 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 251

 Score = 74 (26.0 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
 Identities = 29/81 (35%), Positives = 39/81 (48%), Frame = -1

Query:   539 WF*XPGVGFLXGGNXEXIWGNXS--H--SILXLAVVGEIVXVGGAEYYRIINGL--DLED 378
             WF   G      G  + + GN S  H  SIL +  V ++V +G  E YRI  G   ++ D
Sbjct:   128 WF-KAGSQIFSEGGLDYL-GNPSLIHAQSILAIWAV-QVVLMGAVEGYRIAGGPLGEVVD 184

Query:   377 KFIQVVHXNPLGLAKDPDQAATXK 306
                     +PLGLA DP+  A  K
Sbjct:   185 PLYPGGAFDPLGLADDPEAFAELK 208

 Score = 37 (13.0 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
 Identities = 5/11 (45%), Positives = 9/11 (81%), Frame = -3

Query:   375 VHPGGPXEPIG 343
             ++PGG  +P+G
Sbjct:   186 LYPGGAFDPLG 196


 >gi|115791|sp|P09755|CB22_SOYBN  CHLOROPHYLL A-B BINDING PROTEIN 2 PRECURSOR
            (LHCII TYPE I CAB-2) (LHCP) >gi|81770|pir||S01961 chlorophyll
            a/b-binding protein 2 precursor - soybean >gi|18548|emb|CAA31418.1|
            (X12980) chlorophyll a/b binding preprotein (AA -33 to 223)
            [Glycine max]
            Length = 256

Frame -1 hits (HSPs):                          _________________          
Frame -2 hits (HSPs):                                          _________  
Frame -3 hits (HSPs):                                     ___             
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |         |         |         |        |         | | 256
                       0        50       100       150      200       250
__________________

Annotated Domains:
   Entrez               Transmembrane region: POTENTIAL.         90..109
   Entrez               Transmembrane region: POTENTIAL.         142..162
   Entrez               Transmembrane region: POTENTIAL.         210..226
   PFAM                 chloroa_b-bind: Chlorophyll A-B binding  34..255
   PRODOM               PD001000: CB21(6) CB22(5) CB23(3)        1..31
   PRODOM               PD000275: CB21(11) CB23(9) CB22(8)       36..254
__________________


  Minus Strand HSPs:

 Score = 168 (59.1 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
 Identities = 31/44 (70%), Positives = 37/44 (84%), Frame = -2

Query:   307 KVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNN 176
             KVKE+KNGRLAMF+M G + QA VTG+GP+ENLA HL+DP  NN
Sbjct:   201 KVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 244

 Score = 76 (26.8 bits), Expect = 3.1e-18, Sum P(2) = 3.1e-18
 Identities = 26/81 (32%), Positives = 38/81 (46%), Frame = -1

Query:   539 WF*XPGVGFLXGGNXEXIWGNXS--HSILXLAV-VGEIVXVGGAEYYRIINGL--DLEDK 375
             WF   G      G  + + GN S  H+   LA+   +++ +G  E YRI  G   ++ D 
Sbjct:   121 WF-KAGSQIFSEGGLDYL-GNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPLGEVTDP 178

Query:   374 FIQVVHXNPLGLAKDPDQAATXK 306
                    +PLGLA DP+  A  K
Sbjct:   179 IYPGGSFDPLGLADDPEALAELK 201

 Score = 39 (13.7 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
 Identities = 5/11 (45%), Positives = 9/11 (81%), Frame = -3

Query:   375 VHPGGPXEPIG 343
             ++PGG  +P+G
Sbjct:   179 IYPGGSFDPLG 189


 >gi|115792|sp|P27493|CB22_TOBAC  CHLOROPHYLL A-B BINDING PROTEIN 21 PRECURSOR
            (LHCII TYPE I CAB-21) (LHCP) >gi|72742|pir||CDNT21 chlorophyll
            a/b-binding protein precursor (cab-21) - common tobacco
            >gi|19823|emb|CAA36957.1| (X52743) Cab21 protein precursor
            [Nicotiana tabacum]
            Length = 265

Frame -1 hits (HSPs):                           ________________          
Frame -2 hits (HSPs):                                          _________  
Frame -3 hits (HSPs):                                      ___            
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |         |        |         |        |        |   | 265
                       0        50      100       150      200      250
__________________

Annotated Domains:
   Entrez               Transmembrane region: POTENTIAL.         99..118
   Entrez               Transmembrane region: POTENTIAL.         151..171
   Entrez               Transmembrane region: POTENTIAL.         219..235
   PFAM                 chloroa_b-bind: Chlorophyll A-B binding  35..264
   PRODOM               PD001000: CB21(6) CB22(5) CB23(3)        1..32
   PRODOM               PD000275: CB21(11) CB23(9) CB22(8)       37..263
__________________


  Minus Strand HSPs:

 Score = 170 (59.8 bits), Expect = 3.2e-18, Sum P(2) = 3.2e-18
 Identities = 32/44 (72%), Positives = 37/44 (84%), Frame = -2

Query:   307 KVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNN 176
             KVKEIKNGRLAMF+M G + QA VTG+GP+ENLA HL+DP  NN
Sbjct:   210 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253

 Score = 74 (26.0 bits), Expect = 3.2e-18, Sum P(2) = 3.2e-18
 Identities = 25/81 (30%), Positives = 39/81 (48%), Frame = -1

Query:   539 WF*XPGVGFLXGGNXEXIWGNXS--HSILXLAVVG-EIVXVGGAEYYRIINGL--DLEDK 375
             WF   G      G  + + GN S  H+   LA+   +++ +G  E YR+  G   ++ D 
Sbjct:   130 WF-KAGSQIFSEGGLDYL-GNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDP 187

Query:   374 FIQVVHXNPLGLAKDPDQAATXK 306
                    +PLGLA+DP+  A  K
Sbjct:   188 LYPGGSFDPLGLAEDPEAFAELK 210

 Score = 37 (13.0 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
 Identities = 5/11 (45%), Positives = 9/11 (81%), Frame = -3

Query:   375 VHPGGPXEPIG 343
             ++PGG  +P+G
Sbjct:   188 LYPGGSFDPLG 198


 >gi|693914|gb|AAA80589.1|  (U20983) chlorophyll a/b binding protein [Solanum
            tuberosum]
            Length = 265

Frame -1 hits (HSPs):                           ________________          
Frame -2 hits (HSPs):                                          _________  
Frame -3 hits (HSPs):                                      ___            
                        __________________________________________________
Database sequence:     |         |        |         |        |        |   | 265
                       0        50      100       150      200      250

  Minus Strand HSPs:

 Score = 170 (59.8 bits), Expect = 3.2e-18, Sum P(2) = 3.2e-18
 Identities = 32/44 (72%), Positives = 37/44 (84%), Frame = -2

Query:   307 KVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNN 176
             KVKEIKNGRLAMF+M G + QA VTG+GP+ENLA HL+DP  NN
Sbjct:   210 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253

 Score = 74 (26.0 bits), Expect = 3.2e-18, Sum P(2) = 3.2e-18
 Identities = 27/81 (33%), Positives = 38/81 (46%), Frame = -1

Query:   539 WF*XPGVGFLXGGNXEXIWGNXS--HSILXLAVVG-EIVXVGGAEYYRIINGL--DLEDK 375
             WF   G      G  + + GN S  H+   LA+   ++V +G  E YRI  G   ++ D 
Sbjct:   130 WF-KAGSQIFSEGGLDYL-GNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDP 187

Query:   374 FIQVVHXNPLGLAKDPDQAATXK 306
                    +PLGLA DP+  A  K
Sbjct:   188 LYPGGSFDPLGLADDPEAFAELK 210

 Score = 37 (13.0 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
 Identities = 5/11 (45%), Positives = 9/11 (81%), Frame = -3

Query:   375 VHPGGPXEPIG 343
             ++PGG  +P+G
Sbjct:   188 LYPGGSFDPLG 198


 >gi|3036942|dbj|BAA25388.1|  (AB012636) light harvesting chlorophyll a/b-binding
            protein [Nicotiana sylvestris]
            Length = 265

Frame -1 hits (HSPs):                           ________________          
Frame -2 hits (HSPs):                                          _________  
Frame -3 hits (HSPs):                                      ___            
                        __________________________________________________
Database sequence:     |         |        |         |        |        |   | 265
                       0        50      100       150      200      250

  Minus Strand HSPs:

 Score = 170 (59.8 bits), Expect = 3.2e-18, Sum P(2) = 3.2e-18
 Identities = 32/44 (72%), Positives = 37/44 (84%), Frame = -2

Query:   307 KVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNN 176
             KVKEIKNGRLAMF+M G + QA VTG+GP+ENLA HL+DP  NN
Sbjct:   210 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253

 Score = 74 (26.0 bits), Expect = 3.2e-18, Sum P(2) = 3.2e-18
 Identities = 25/81 (30%), Positives = 39/81 (48%), Frame = -1

Query:   539 WF*XPGVGFLXGGNXEXIWGNXS--HSILXLAVVG-EIVXVGGAEYYRIINGL--DLEDK 375
             WF   G      G  + + GN S  H+   LA+   +++ +G  E YR+  G   ++ D 
Sbjct:   130 WF-KAGSQIFSEGGLDYL-GNPSLVHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDP 187

Query:   374 FIQVVHXNPLGLAKDPDQAATXK 306
                    +PLGLA+DP+  A  K
Sbjct:   188 LYPGGSFDPLGLAEDPEAFAELK 210

 Score = 37 (13.0 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
 Identities = 5/11 (45%), Positives = 9/11 (81%), Frame = -3

Query:   375 VHPGGPXEPIG 343
             ++PGG  +P+G
Sbjct:   188 LYPGGSFDPLG 198


 >gi|3036944|dbj|BAA25389.1|  (AB012637) light harvesting chlorophyll a/b-binding
            protein [Nicotiana sylvestris]
            Length = 265

Frame -1 hits (HSPs):                           ________________          
Frame -2 hits (HSPs):                                          _________  
Frame -3 hits (HSPs):                                      ___            
                        __________________________________________________
Database sequence:     |         |        |         |        |        |   | 265
                       0        50      100       150      200      250

  Minus Strand HSPs:

 Score = 170 (59.8 bits), Expect = 3.2e-18, Sum P(2) = 3.2e-18
 Identities = 32/44 (72%), Positives = 37/44 (84%), Frame = -2

Query:   307 KVKEIKNGRLAMFAMLGXYFQAYVTGEGPVENLAKHLSDPFGNN 176
             KVKEIKNGRLAMF+M G + QA VTG+GP+ENLA HL+DP  NN
Sbjct:   210 KVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 253

 Score = 74 (26.0 bits), Expect = 3.2e-18, Sum P(2) = 3.2e-18
 Identities = 25/81 (30%), Positives = 39/81 (48%), Frame = -1

Query:   539 WF*XPGVGFLXGGNXEXIWGNXS--HSILXLAVVG-EIVXVGGAEYYRIINGL--DLEDK 375
             WF   G      G  + + GN S  H+   LA+   +++ +G  E YR+  G   ++ D 
Sbjct:   130 WF-KAGSQIFSEGGLDYL-GNPSLIHAQSILAIWACQVILMGAVEGYRVAGGPLGEVVDP 187

Query:   374 FIQVVHXNPLGLAKDPDQAATXK 306
                    +PLGLA+DP+  A  K
Sbjct:   188 LYPGGSFDPLGLAEDPEAFAELK 210

 Score = 37 (13.0 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
 Identities = 5/11 (45%), Positives = 9/11 (81%), Frame = -3

Query:   375 VHPGGPXEPIG 343
             ++PGG  +P+G
Sbjct:   188 LYPGGSFDPLG 198


WARNING:  HSPs involving 229 database sequences were not reported due to the
          limiting value of parameter B = 50.


Parameters:
  filter=none
  matrix=BLOSUM62
  V=50
  B=50
  E=10
  gi
  H=1
  sort_by_pvalue
  echofilter

  ctxfactor=5.89

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   Std.    0   BLOSUM62                                 0.318   0.135   0.401  
   +3      0   BLOSUM62        0.318   0.135   0.401    0.355   0.158   0.563  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +2      0   BLOSUM62        0.318   0.135   0.401    0.333   0.148   0.517  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +1      0   BLOSUM62        0.318   0.135   0.401    0.344   0.150   0.518  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -1      0   BLOSUM62        0.318   0.135   0.401    0.345   0.156   0.573  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -2      0   BLOSUM62        0.318   0.135   0.401    0.338   0.148   0.513  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -3      0   BLOSUM62        0.318   0.135   0.401    0.351   0.162   0.601  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +3      0      200       181       10.  76 3  12 22  0.12    34
                                                    31  0.12    37
   +2      0      200       185       10.  76 3  12 22  0.12    34
                                                    31  0.12    37
   +1      0      200       180       10.  76 3  12 22  0.11    34
                                                    31  0.12    37
   -1      0      200       181       10.  76 3  12 22  0.12    34
                                                    31  0.12    37
   -2      0      200       181       10.  76 3  12 22  0.12    34
                                                    31  0.12    37
   -3      0      200       182       10.  76 3  12 22  0.12    34
                                                    31  0.12    37


Statistics:

  Database:  /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
    Title:  nr
    Release date:  unknown
    Posted date:  4:06 PM CST Feb 28, 2001
    Format:  BLAST
  # of letters in database:  197,782,623
  # of sequences in database:  625,274
  # of database sequences satisfying E:  279
  No. of states in DFA:  600 (59 KB)
  Total size of DFA:  213 KB (256 KB)
  Time to generate neighborhood:  0.01u 0.01s 0.02t  Elapsed: 00:00:00
  No. of threads or processors used:  6
  Search cpu time:  197.55u 1.14s 198.69t  Elapsed: 00:00:34
  Total cpu time:  197.61u 1.19s 198.80t  Elapsed: 00:00:34
  Start:  Mon Oct  1 21:01:26 2001   End:  Mon Oct  1 21:02:00 2001

WARNINGS ISSUED:  2


Annotated Domains Database:   March 14, 2000 

Release Date:  March 14, 2000