R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
WARNING: Descriptions of 16 database sequences were not reported due to the
limiting value of parameter V = 50.
>gi|2435395|gb|AAB71208.1| (U63550) pectate lyase [Fragaria x ananassa]
Length = 405
Frame 3 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | 405
0 150 300
Plus Strand HSPs:
Score = 264 (92.9 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 63/122 (51%), Positives = 82/122 (67%), Frame = +3
Query: 99 MAVSSSSATKWV----VFLLLALLIREEA-MATPQISDLRNLEVERHRLPSLTNSSMAER 263
M ++SS AT + LLLALL+ A + + R +EV S NSSMA+R
Sbjct: 1 MRLASSIATMHFYMTPLLLLLALLVCVSASVENGKPVQSRFVEVVEEPRSSF-NSSMADR 59
Query: 264 AKEAEKLNEQAAVANPEEVVSMVEMSIQNSTERRKLGFFSCGTGNPIDDCWRCDPNWQRN 443
+ + NE A V NPEE+ S+V+ SI+NS+ RR+LG+FSC TGNPIDDCWRCDP WQR+
Sbjct: 60 SND--HWNEHA-VDNPEEIASLVDTSIRNSSTRRELGYFSCATGNPIDDCWRCDPQWQRH 116
Query: 444 RKRLAD 461
RKR A+
Sbjct: 117 RKRPAN 122
>gi|9279795|dbj|BAB01216.1| (AP000740) pectate lyase [Arabidopsis thaliana]
Length = 449
Frame 3 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | 449
0 150 300
Plus Strand HSPs:
Score = 261 (91.9 bits), Expect = 4.6e-21, P = 4.6e-21
Identities = 56/107 (52%), Positives = 69/107 (64%), Frame = +3
Query: 141 LLLALLIREEAMATPQISDLRNLEVERHRLPSLTNSSMAERAKEAEKLNEQAAVANPEEV 320
++LAL I MA + DL + H S +NSS A + + + AV NPEEV
Sbjct: 16 IILALCINSSTMAQ-ETEDLNS-----H---SSSNSSTANKLPNDDGAWNEHAVKNPEEV 66
Query: 321 VSMVEMSIQNSTERRKLGFFSCGTGNPIDDCWRCDPNWQRNRKRLAD 461
+MV+M I+NSTERR+LGFFSC TGNPIDDCWRCD NW RKRLA+
Sbjct: 67 AAMVDMKIKNSTERRRLGFFSCATGNPIDDCWRCDRNWHLRRKRLAN 113
>gi|2494113|gb|AAB80622.1| (AC002376) Strong similarity to Musa pectate lyase
(gb|X92943). ESTs gb|AA042458, gb|ATTS4502, gb|N38552 come from
this gene. [Arabidopsis thaliana]
Length = 431
Frame 3 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | 431
0 150 300
Plus Strand HSPs:
Score = 254 (89.4 bits), Expect = 2.3e-20, P = 2.3e-20
Identities = 48/75 (64%), Positives = 58/75 (77%), Frame = +3
Query: 243 NSSMAERAKEAEKLNEQAAVANPEEV----VSMVEMSIQNSTERRKLGFFSCGTGNPIDD 410
N S R+ E E Q AV NP+EV +++ EMS++N TERRKLG+F+CGTGNPIDD
Sbjct: 28 NISSLPRSDETEW--NQHAVTNPDEVADEVLALTEMSVRNHTERRKLGYFTCGTGNPIDD 85
Query: 411 CWRCDPNWQRNRKRLAD 461
CWRCDPNW +NRKRLAD
Sbjct: 86 CWRCDPNWHKNRKRLAD 102
>gi|6729008|gb|AAF27005.1|AC016827_16 (AC016827) putative pectate lyase
[Arabidopsis thaliana]
Length = 416
Frame 3 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | 416
0 150 300
Plus Strand HSPs:
Score = 245 (86.2 bits), Expect = 2.0e-19, P = 2.0e-19
Identities = 45/75 (60%), Positives = 55/75 (73%), Frame = +3
Query: 237 LTNSSMAERAKEAEKLNEQAAVANPEEVVSMVEMSIQNSTERRKLGFFSCGTGNPIDDCW 416
LT + A + + + AV NP+EV +MV+MSI+NSTERR+LG+FSC TGNPIDDCW
Sbjct: 15 LTALFIGVNASRSNETWHEHAVENPDEVAAMVDMSIRNSTERRRLGYFSCATGNPIDDCW 74
Query: 417 RCDPNWQRNRKRLAD 461
RCD WQ RKRLAD
Sbjct: 75 RCDRKWQLRRKRLAD 89
>gi|11994243|dbj|BAB01365.1| (AB028621) pectate lyase [Arabidopsis thaliana]
Length = 452
Frame 3 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | || 452
0 150 300 450
Plus Strand HSPs:
Score = 243 (85.5 bits), Expect = 4.8e-19, P = 4.8e-19
Identities = 57/125 (45%), Positives = 76/125 (60%), Frame = +3
Query: 99 MAVSS---SSATKWVVFLLLALLIREEAMATPQISDLRNLEVERHRLPSLTNSSMAERAK 269
MA SS +SA ++F+ + ++ + +IS R L+ E + S +S M R
Sbjct: 1 MATSSLKLTSACFVLLFIFVGCVLTATNLRNNEISRSRKLKTEDSK--SFNSSPMTTRLD 58
Query: 270 EAEKLNEQAAVANPE----EVVSMVEMSIQNSTERRKLGFFSCGTGNPIDDCWRCDPNWQ 437
+LNE A V +P+ EV +++ MS QN T RRKLGFFSCG GN IDDCWRCD NW
Sbjct: 59 GVVELNEHA-VTDPDKVAHEVSNLIHMSEQNITARRKLGFFSCGNGNLIDDCWRCDRNWN 117
Query: 438 RNRKRLAD 461
+NRK LAD
Sbjct: 118 KNRKHLAD 125
>gi|7449068|pir||T07701 pectate lyase (EC 4.2.2.2) F17N18.100 - Arabidopsis
thaliana >gi|4753655|emb|CAB41931.1| (AL049751) pectate lyase like
protein [Arabidopsis thaliana] >gi|7268023|emb|CAB78363.1|
(AL161535) pectate lyase like protein [Arabidopsis thaliana]
Length = 418
Frame 3 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | 418
0 150 300
Plus Strand HSPs:
Score = 232 (81.7 bits), Expect = 5.9e-18, P = 5.9e-18
Identities = 42/56 (75%), Positives = 47/56 (83%), Frame = +3
Query: 297 AVANPEEVVSMVEMSIQNSTERRKLGFFS-CGTGNPIDDCWRCDPNWQRNRKRLAD 461
AV +PEE+ +MV+MSI+NST RRKLGFFS C TGNPIDDCWRCD W R RKRLAD
Sbjct: 36 AVKDPEEIAAMVDMSIRNSTYRRKLGFFSSCSTGNPIDDCWRCDKKWHRRRKRLAD 91
>gi|10177179|dbj|BAB10313.1| (AB017061) pectate lyase [Arabidopsis thaliana]
Length = 393
Frame 3 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | 393
0 150 300
Plus Strand HSPs:
Score = 230 (81.0 bits), Expect = 7.6e-18, P = 7.6e-18
Identities = 40/55 (72%), Positives = 46/55 (83%), Frame = +3
Query: 297 AVANPEEVVSMVEMSIQNSTERRKLGFFSCGTGNPIDDCWRCDPNWQRNRKRLAD 461
AV NPEEV +MV+MSI+NST RR+LG+FSC TGNPIDDCWRCD WQ RK LA+
Sbjct: 13 AVENPEEVAAMVDMSIRNSTARRRLGYFSCSTGNPIDDCWRCDRRWQSRRKHLAN 67
>gi|6606534|gb|AAF19196.1|AF206320_1 (AF206320) pectate lyase 2 [Musa
acuminata]
Length = 454
Frame 3 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | || 454
0 150 300 450
Plus Strand HSPs:
Score = 229 (80.6 bits), Expect = 1.7e-17, P = 1.7e-17
Identities = 53/126 (42%), Positives = 76/126 (60%), Frame = +3
Query: 114 SSATKWV---VFLLLA-LLIREEA---MATPQISDLRNLEVERHRLPSLT-NSSMAERAK 269
++ +W+ + LLL LL+ + + + + S RN R L + N++ A+ +
Sbjct: 2 TAGLRWIPPLLLLLLGFLLVLNGSRGWIGSERSSGSRNGGASRRSLREASANATSADASL 61
Query: 270 EAEKLNE--QAAVANPEEVVSMVEMSIQNSTERRKLGFFSCGTGNPIDDCWRCDPNWQRN 443
E + +AAV +PEEV S V +I NST RR LG+ SCG+GNPIDDCWRCDP+W N
Sbjct: 62 EERAVTRAAEAAVDDPEEVASTVLTTIINSTARRSLGYLSCGSGNPIDDCWRCDPDWHVN 121
Query: 444 RKRLAD 461
RK+LAD
Sbjct: 122 RKKLAD 127
>gi|10177299|dbj|BAB10560.1| (AB008265) pectate lyase [Arabidopsis thaliana]
Length = 410
Frame 3 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | 410
0 150 300
Plus Strand HSPs:
Score = 213 (75.0 bits), Expect = 7.2e-16, P = 7.2e-16
Identities = 37/54 (68%), Positives = 43/54 (79%), Frame = +3
Query: 300 VANPEEVVSMVEMSIQNSTERRKLGFFSCGTGNPIDDCWRCDPNWQRNRKRLAD 461
V++PE VV V I S RRKLGFFSCG+GNPIDDCWRCD +W++NRKRLAD
Sbjct: 28 VSDPELVVEEVHRKINESISRRKLGFFSCGSGNPIDDCWRCDKDWEKNRKRLAD 81
>gi|7547009|gb|AAF63756.1|AF243475_1 (AF243475) pectate lyase [Vitis vinifera]
Length = 398
Frame 3 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | 398
0 150 300
Plus Strand HSPs:
Score = 205 (72.2 bits), Expect = 5.0e-15, P = 5.0e-15
Identities = 39/60 (65%), Positives = 43/60 (71%), Frame = +3
Query: 282 LNEQAAVANPEEVVSMVEMSIQNSTERRKLGFFSCGTGNPIDDCWRCDPNWQRNRKRLAD 461
L A V +PE VV V SI S RR LG+FSCGTGNPIDDCWRCD NW +NR+RLAD
Sbjct: 14 LGSPAPVQDPEVVVQEVHRSINAS--RRNLGYFSCGTGNPIDDCWRCDANWDKNRQRLAD 71
>gi|7449066|pir||T05240 pectate lyase (EC 4.2.2.2) A11 - Arabidopsis thaliana
(fragment) >gi|4455300|emb|CAB36835.1| (AL035528) putative pectate
lyase A11 (fragment) [Arabidopsis thaliana]
>gi|7268075|emb|CAB78413.1| (AL161537) putative pectate lyase A11
(fragment) [Arabidopsis thaliana]
Length = 374
Frame 3 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | 374
0 150 300
Plus Strand HSPs:
Score = 203 (71.5 bits), Expect = 6.7e-15, P = 6.7e-15
Identities = 35/41 (85%), Positives = 36/41 (87%), Frame = +3
Query: 339 SIQNSTERRKLGFFSCGTGNPIDDCWRCDPNWQRNRKRLAD 461
S QN T RRKLGFFSCGTGNPIDDCWRCD NW +NRKRLAD
Sbjct: 7 SEQNRTARRKLGFFSCGTGNPIDDCWRCDRNWHKNRKRLAD 47
>gi|1256509|emb|CAA63496.1| (X92943) pectate lyase [Musa acuminata]
Length = 398
Frame 3 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | 398
0 150 300
Plus Strand HSPs:
Score = 199 (70.1 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 37/56 (66%), Positives = 44/56 (78%), Frame = +3
Query: 294 AAVANPEEVVSMVEMSIQNSTERRKLGFFSCGTGNPIDDCWRCDPNWQRNRKRLAD 461
AAV +PE VV V+ S+ S RR+LG+ SCGTGNPIDDCWRCDP+W NR+RLAD
Sbjct: 17 AAVRDPELVVQEVQRSLNVS--RRRLGYLSCGTGNPIDDCWRCDPDWADNRQRLAD 70
>gi|6606532|gb|AAF19195.1|AF206319_1 (AF206319) pectate lyase 1 [Musa
acuminata]
Length = 407
Frame 3 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | 407
0 150 300
Plus Strand HSPs:
Score = 199 (70.1 bits), Expect = 2.5e-14, P = 2.5e-14
Identities = 37/56 (66%), Positives = 44/56 (78%), Frame = +3
Query: 294 AAVANPEEVVSMVEMSIQNSTERRKLGFFSCGTGNPIDDCWRCDPNWQRNRKRLAD 461
AAV +PE VV V+ S+ S RR+LG+ SCGTGNPIDDCWRCDP+W NR+RLAD
Sbjct: 27 AAVRDPELVVQEVQRSLNVS--RRRLGYLSCGTGNPIDDCWRCDPDWADNRQRLAD 80
>gi|7449067|pir||T05556 pectate lyase (EC 4.2.2.2) F22K18.20 - Arabidopsis
thaliana >gi|4220512|emb|CAA22985.1| (AL035356) putative pectate
lyase [Arabidopsis thaliana] >gi|7269329|emb|CAB79388.1| (AL161562)
putative pectate lyase [Arabidopsis thaliana]
Length = 404
Frame 3 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | 404
0 150 300
Plus Strand HSPs:
Score = 192 (67.6 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 35/55 (63%), Positives = 42/55 (76%), Frame = +3
Query: 300 VANPEEVVSMVEMSIQNSTE-RRKLGFFSCGTGNPIDDCWRCDPNWQRNRKRLAD 461
V +PE VV V SI S RRKLG+ SC TGNPIDDCWRCDP+W+++R+RLAD
Sbjct: 25 VPDPESVVEEVHKSINASVAGRRKLGYLSCTTGNPIDDCWRCDPHWEQHRQRLAD 79
>gi|2463509|emb|CAA70735.1| (Y09541) pectate lyase [Zinnia elegans]
Length = 401
Frame 3 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | 401
0 150 300
Plus Strand HSPs:
Score = 190 (66.9 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 34/51 (66%), Positives = 38/51 (74%), Frame = +3
Query: 309 PEEVVSMVEMSIQNSTERRKLGFFSCGTGNPIDDCWRCDPNWQRNRKRLAD 461
P +V+ V SI S RR LG+ SCGTGNPIDDCWRCDPNW NR+RLAD
Sbjct: 26 PHAIVNEVHKSINAS--RRNLGYLSCGTGNPIDDCWRCDPNWANNRQRLAD 74
>gi|11072028|gb|AAG28907.1|AC008113_23 (AC008113) F12A21.12 [Arabidopsis
thaliana]
Length = 392
Frame 3 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | 392
0 150 300
Plus Strand HSPs:
Score = 172 (60.5 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 27/37 (72%), Positives = 31/37 (83%), Frame = +3
Query: 351 STERRKLGFFSCGTGNPIDDCWRCDPNWQRNRKRLAD 461
+ RR LG SCGTGNPIDDCWRCDP W++NR+RLAD
Sbjct: 29 NASRRNLGVLSCGTGNPIDDCWRCDPKWEKNRQRLAD 65
>gi|7939512|dbj|BAA95715.1| (AB024028) pectate lyase-like protein [Arabidopsis
thaliana]
Length = 409
Frame 3 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | 409
0 150 300
Plus Strand HSPs:
Score = 171 (60.2 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 29/46 (63%), Positives = 37/46 (80%), Frame = +3
Query: 324 SMVEMSIQNSTERRKLGFFSCGTGNPIDDCWRCDPNWQRNRKRLAD 461
S++ S+ N++ RR L + SC TGNPIDDCWRCDPNW+ NR+RLAD
Sbjct: 38 SLICRSVFNAS-RRSLAYLSCRTGNPIDDCWRCDPNWETNRQRLAD 82
>gi|7449062|pir||T03932 pectate lyase (EC 4.2.2.2) Nt59 - common tobacco
(fragment) >gi|2281330|gb|AAB69758.1| (U85646) putative pectate
lyase Nt59 [Nicotiana tabacum]
Length = 274
Frame 3 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | | | 274
0 50 100 150 200 250
Plus Strand HSPs:
Score = 156 (54.9 bits), Expect = 4.0e-10, P = 4.0e-10
Identities = 37/80 (46%), Positives = 44/80 (55%), Frame = +3
Query: 261 RAKEAEKLNEQAAVANPEEVV---------SMVEMSIQNSTERRKLGFFS----CGTGNP 401
RA+EA + Q NPE V SM E+++ N++ RR LG C NP
Sbjct: 38 RAEEAREYARQIYEPNPENVTLAFNQKVRDSMKEVTVSNNSTRRGLGTKKYKGPCMVTNP 97
Query: 402 IDDCWRCDPNWQRNRKRLAD 461
ID CWRCDPNW NRKRLAD
Sbjct: 98 IDRCWRCDPNWADNRKRLAD 117
>gi|11279704|pir||T46165 pectate lyase-like protein - Arabidopsis thaliana
>gi|6630739|emb|CAB64222.1| (AL132958) pectate lyase-like protein
[Arabidopsis thaliana]
Length = 463
Frame 3 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | 463
0 150 300 450
Plus Strand HSPs:
Score = 139 (48.9 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 28/59 (47%), Positives = 34/59 (57%), Frame = +3
Query: 306 NPEEVVSMVEMSIQNSTERRKL-------GFFSCGTGNPIDDCWRCDPNWQRNRKRLAD 461
+PE V V+ + S RR+ G C TGNPIDDCW+CDPNW NR+ LAD
Sbjct: 17 DPELVAYQVQWKVNASITRRQALDTTDQAGSTPCITGNPIDDCWKCDPNWPNNRQGLAD 75
>gi|7449065|pir||T06728 pectate lyase (EC 4.2.2.2) F28P10.100 - Arabidopsis
thaliana >gi|4678301|emb|CAB41092.1| (AL049655) pectate lyase-like
protein [Arabidopsis thaliana]
Length = 542
Frame 3 hits (HSPs): ____
Frame 1 hits (HSPs): __
__________________________________________________
Database sequence: | | | | | 542
0 150 300 450
Plus Strand HSPs:
Score = 123 (43.3 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 21/28 (75%), Positives = 23/28 (82%), Frame = +3
Query: 381 SCGTGNPIDDCWRC-DPNWQRNRKRLAD 461
SC TGNPIDDCWRC D +W NR+RLAD
Sbjct: 74 SCRTGNPIDDCWRCSDADWSTNRQRLAD 101
Score = 38 (13.4 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 8/16 (50%), Positives = 11/16 (68%), Frame = +1
Query: 115 LLQQNGSSSCFWRCLF 162
+L QN S++ F CLF
Sbjct: 1 MLLQNFSNTIFLLCLF 16
>gi|629849|pir||S43335 pectate lyase (EC 4.2.2.2) - maize
>gi|405535|gb|AAA16476.1| (L20140) homology with pectate lyase [Zea
mays]
Length = 438
Frame 3 hits (HSPs): _________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | 438
0 150 300
__________________
Annotated Domains:
DOMO DM04067: 1..78
DOMO DM00584: PECTATELYASE 80..421
__________________
Plus Strand HSPs:
Score = 129 (45.4 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 28/70 (40%), Positives = 37/70 (52%), Frame = +3
Query: 255 AERAKEAEKLNEQAAVANPEEVVSMVEMSIQNSTERRKLGFFS--CGTGNPIDDCWRCDP 428
AERA+ A N A V++P + + +T RR L + C NPID CWRC
Sbjct: 42 AERAEVARSRNLAAYVSDPVAATNRFNADVLRATTRRALARYDGPCMATNPIDRCWRCRA 101
Query: 429 NWQRNRKRLA 458
+W +RKRLA
Sbjct: 102 DWATDRKRLA 111
>gi|125889|sp|P15722|PE59_LYCES PROBABLE PECTATE LYASE P59 PRECURSOR
>gi|280400|pir||S27098 pectate lyase (EC 4.2.2.2) LAT59 - tomato
>gi|19271|emb|CAA33523.1| (X15499) P59 protein [Lycopersicon
esculentum]
Length = 449
Frame 3 hits (HSPs): ______
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 449
0 150 300
__________________
Annotated Domains:
DOMO DM04067: 1..86
DOMO DM00584: PECTATELYASE 88..435
Entrez active site: POTENTIAL. 325
Entrez glycosylation site: POTENTIAL. 56
Entrez glycosylation site: POTENTIAL. 80
Entrez glycosylation site: POTENTIAL. 81
PFAM pec_lyase: Pectate lyase 170..442
PRINTS AMBALLERGEN1: Pollen allergen AMB motif 122..139
PRINTS AMBALLERGEN2: Pollen allergen AMB motif 145..170
PRINTS AMBALLERGEN3: Pollen allergen AMB motif 181..197
PRINTS AMBALLERGEN4: Pollen allergen AMB motif 245..266
PRINTS AMBALLERGEN5: Pollen allergen AMB motif 325..344
PRINTS AMBALLERGEN6: Pollen allergen AMB motif 347..366
PRINTS AMBALLERGEN7: Pollen allergen AMB motif 389..413
PRINTS AMBALLERGEN8: Pollen allergen AMB motif 420..443
PRODOM PD013760: 10..90
PRODOM PD003200: PEL(2) 94..161
PRODOM PD117517: PE59_LYCES 163..189
PRODOM PD000974: PEL(9) PLYA(3) PLYD(3) 191..326
PRODOM PD003199: PEL(2) 328..403
PRODOM PD117525: PE59_LYCES 405..448
__________________
Plus Strand HSPs:
Score = 124 (43.7 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 24/42 (57%), Positives = 27/42 (64%), Frame = +3
Query: 348 NSTERRKLGFFS----CGTGNPIDDCWRCDPNWQRNRKRLAD 461
N++ RR LG C NPID CWRCDPNW NRK+LAD
Sbjct: 80 NNSTRRGLGTKKYTGPCMVTNPIDKCWRCDPNWADNRKKLAD 121
>gi|9758606|dbj|BAB09239.1| (AB009050) pectate lyase [Arabidopsis thaliana]
Length = 392
Frame 3 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | 392
0 150 300
Plus Strand HSPs:
Score = 120 (42.2 bits), Expect = 9.8e-06, P = 9.8e-06
Identities = 20/28 (71%), Positives = 22/28 (78%), Frame = +3
Query: 381 SCGT-GNPIDDCWRCDPNWQRNRKRLAD 461
SC GNPID+CWRCD NW+ NRK LAD
Sbjct: 43 SCSANGNPIDECWRCDENWKDNRKNLAD 70
>gi|6094557|gb|AAF03499.1|AC010676_9 (AC010676) putative pectate lyase
[Arabidopsis thaliana] >gi|6714461|gb|AAF26147.1|AC008261_4
(AC008261) putative pectate lyase [Arabidopsis thaliana]
Length = 475
Frame 3 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | 475
0 150 300 450
Plus Strand HSPs:
Score = 119 (41.9 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 31/79 (39%), Positives = 42/79 (53%), Frame = +3
Query: 258 ERAKEAEKLNEQAAVANPEE-VVSMVEMSIQNSTER--------RKLGFFS-----CGTG 395
+ + + E E+ AVA+ EE V+ M+ S NST R + G +S C
Sbjct: 66 DNSTDVEGTEEEKAVASEEEDVIEMIS-SPTNSTRRSLTGRGKGKGKGKWSKLTGPCTAS 124
Query: 396 NPIDDCWRCDPNWQRNRKRL 455
NPID CWRC P+W R RK+L
Sbjct: 125 NPIDKCWRCQPDWARRRKKL 144
>gi|730290|sp|P40973|PEL_LILLO PECTATE LYASE PRECURSOR >gi|322883|pir||S29612
pectate lyase (EC 4.2.2.2) - trumpet lily >gi|19451|emb|CAA78976.1|
(Z17328) pectate lyase [Lilium longiflorum]
>gi|308902|gb|AAA33398.1| (L18911) pectate lyase [Lilium
longiflorum]
Length = 434
Frame 3 hits (HSPs): _________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 434
0 150 300
__________________
Annotated Domains:
DOMO DM04067: 1..73
DOMO DM00584: PECTATELYASE 75..417
Entrez active site: POTENTIAL. 312
Entrez glycosylation site: POTENTIAL. 68
Entrez glycosylation site: POTENTIAL. 97
PFAM pec_lyase: Pectate lyase 157..396
PRINTS AMBALLERGEN1: Pollen allergen AMB motif 108..125
PRINTS AMBALLERGEN2: Pollen allergen AMB motif 132..157
PRINTS AMBALLERGEN3: Pollen allergen AMB motif 168..184
PRINTS AMBALLERGEN4: Pollen allergen AMB motif 232..253
PRINTS AMBALLERGEN5: Pollen allergen AMB motif 312..331
PRINTS AMBALLERGEN6: Pollen allergen AMB motif 334..353
PRINTS AMBALLERGEN7: Pollen allergen AMB motif 376..400
PRINTS AMBALLERGEN8: Pollen allergen AMB motif 405..428
PRODOM PD013760: 6..74
PRODOM PD003200: PEL(2) 79..150
PRODOM PD000974: PEL(9) PLYA(3) PLYD(3) 152..313
PRODOM PD003199: PEL(2) 315..390
PRODOM PD117523: PEL_LILLO 392..433
__________________
Plus Strand HSPs:
Score = 117 (41.2 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 31/73 (42%), Positives = 40/73 (54%), Frame = +3
Query: 258 ERAKEAEKLNEQAAVANPEEVVS----MVEMSIQ-NSTERR----KLGFFSCGTGNPIDD 410
+++K A+ ++A +PEEV + V S + NST R KLG C NPID
Sbjct: 33 KKSKVAQAKAKKAYTPHPEEVTNHFNKAVHSSFEGNSTRRNLRTNKLG--QCLATNPIDR 90
Query: 411 CWRCDPNWQRNRKRL 455
CWRC NW NRK L
Sbjct: 91 CWRCKKNWSANRKDL 105
>gi|112863|sp|P24396|9612_LYCES STYLE DEVELOPMENT-SPECIFIC PROTEIN 9612
PRECURSOR >gi|100227|pir||S12209 pectate lyase (EC 4.2.2.2) -
tomato >gi|19162|emb|CAA38979.1| (X55193) 9612 [Lycopersicon
esculentum]
Length = 404
Frame 3 hits (HSPs): _____
Frame 2 hits (HSPs): ___
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 404
0 150 300
__________________
Annotated Domains:
DOMO DM00584: PECTATELYASE 43..387
Entrez glycosylation site: POTENTIAL. 37
Entrez glycosylation site: POTENTIAL. 191
PFAM pec_lyase: Pectate lyase 125..397
PRINTS AMBALLERGEN1: Pollen allergen AMB motif 76..93
PRINTS AMBALLERGEN2: Pollen allergen AMB motif 100..125
PRINTS AMBALLERGEN3: Pollen allergen AMB motif 136..152
PRINTS AMBALLERGEN4: Pollen allergen AMB motif 200..221
PRINTS AMBALLERGEN5: Pollen allergen AMB motif 280..299
PRINTS AMBALLERGEN6: Pollen allergen AMB motif 302..321
PRINTS AMBALLERGEN7: Pollen allergen AMB motif 344..368
PRINTS AMBALLERGEN8: Pollen allergen AMB motif 375..398
PRODOM PD117527: 9612_LYCES 1..47
PRODOM PD003200: PEL(2) 49..117
PRODOM PD191029: 9612(1) O24554(1) 119..140
PRODOM PD000974: PEL(9) PLYA(3) PLYD(3) 142..281
PRODOM PD003199: PEL(2) 283..358
PRODOM PD023601: 9612(1) O23017(1) O24554(1) 364..403
__________________
Plus Strand HSPs:
Score = 102 (35.9 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 20/38 (52%), Positives = 26/38 (68%), Frame = +3
Query: 294 AAVANPEEVVSMVEMSIQNSTERRKLGFFSCGTGNPID 407
+++ +PE VV V SI S RR LG+ SCG+GNPID
Sbjct: 20 SSIQDPELVVQDVHRSINASLTRRNLGYLSCGSGNPID 57
Score = 46 (16.2 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 11/21 (52%), Positives = 14/21 (66%), Frame = +2
Query: 410 LLALRPQLATQSEASCRLAIG 472
LLA++PQL +S A AIG
Sbjct: 59 LLAMQPQLGKKSPAFSYCAIG 79
>gi|2281334|gb|AAB69759.1| (U83619) putative pectate lyase [Arabidopsis
thaliana]
Length = 459
Frame 3 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | 459
0 150 300 450
Plus Strand HSPs:
Score = 112 (39.4 bits), Expect = 0.00083, P = 0.00083
Identities = 18/26 (69%), Positives = 20/26 (76%), Frame = +3
Query: 384 CGTGNPIDDCWRCDPNWQRNRKRLAD 461
C NPID+CWRCD NW NRK+LAD
Sbjct: 101 CLAYNPIDNCWRCDRNWANNRKKLAD 126
>gi|7262684|gb|AAF43942.1|AC012188_19 (AC012188) Strong similarity to Pectate
Lyase Precursor from Lilium longiflorum gi|730290 and contains a
Pectate lyase PF|00544 domain. EST gb|AW004514 comes from this
gene. [Arabidopsis thaliana]
Length = 459
Frame 3 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | 459
0 150 300 450
Plus Strand HSPs:
Score = 112 (39.4 bits), Expect = 0.00083, P = 0.00083
Identities = 18/26 (69%), Positives = 20/26 (76%), Frame = +3
Query: 384 CGTGNPIDDCWRCDPNWQRNRKRLAD 461
C NPID+CWRCD NW NRK+LAD
Sbjct: 101 CLAYNPIDNCWRCDRNWANNRKKLAD 126
>gi|730291|sp|P40972|PEL_TOBAC PECTATE LYASE PRECURSOR >gi|280405|pir||S26211
pectate lyase (EC 4.2.2.2) - common tobacco
>gi|19908|emb|CAA47630.1| (X67158) pectate lyase [Nicotiana
tabacum] >gi|19982|emb|CAA43414.1| (X61102) pectate lyase
[Nicotiana tabacum]
Length = 397
Frame 3 hits (HSPs): ____
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 397
0 150 300
__________________
Annotated Domains:
Entrez active site: POTENTIAL. 272
Entrez glycosylation site: POTENTIAL. 134
Entrez glycosylation site: POTENTIAL. 227
PFAM pec_lyase: Pectate lyase 117..351
PRINTS AMBALLERGEN1: Pollen allergen AMB motif 68..85
PRINTS AMBALLERGEN2: Pollen allergen AMB motif 92..117
PRINTS AMBALLERGEN3: Pollen allergen AMB motif 128..144
PRINTS AMBALLERGEN4: Pollen allergen AMB motif 192..213
PRINTS AMBALLERGEN5: Pollen allergen AMB motif 272..291
PRINTS AMBALLERGEN6: Pollen allergen AMB motif 294..313
PRINTS AMBALLERGEN7: Pollen allergen AMB motif 338..362
PRINTS AMBALLERGEN8: Pollen allergen AMB motif 368..391
PRODOM PD117520: PEL_TOBAC 1..38
PRODOM PD003200: PEL(2) 40..108
PRODOM PD000974: PEL(9) PLYA(3) PLYD(3) 129..273
PRODOM PD003199: PEL(2) 275..352
PRODOM PD038458: PE56(1) PEL(1) 354..396
__________________
Plus Strand HSPs:
Score = 108 (38.0 bits), Expect = 0.0028, P = 0.0028
Identities = 16/26 (61%), Positives = 19/26 (73%), Frame = +3
Query: 384 CGTGNPIDDCWRCDPNWQRNRKRLAD 461
C N ID CWRCDPNW NR+++AD
Sbjct: 42 CRAENAIDKCWRCDPNWAENRQKMAD 67
>gi|9087152|sp|P81294|MPA1_JUNAS MAJOR POLLEN ALLERGEN JUN A 1 PRECURSOR
>gi|4138877|gb|AAD03608.1| (AF106662) pollen major allergen 1-1
[Juniperus ashei] >gi|4138879|gb|AAD03609.1| (AF106663) pollen
major allergen 1-2 [Juniperus ashei]
Length = 367
Frame 3 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | 367
0 150 300
Plus Strand HSPs:
Score = 104 (36.6 bits), Expect = 0.0096, P = 0.0095
Identities = 17/27 (62%), Positives = 20/27 (74%), Frame = +3
Query: 381 SCGTGNPIDDCWRCDPNWQRNRKRLAD 461
SC + NPID CWR D NW +NR +LAD
Sbjct: 18 SCYSDNPIDSCWRGDSNWDQNRMKLAD 44
>gi|8101711|gb|AAF72625.1|AF257491_1 (AF257491) Cup s 1 pollen allergen
precursor [Cupressus sempervirens]
Length = 367
Frame 3 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | 367
0 150 300
Plus Strand HSPs:
Score = 104 (36.6 bits), Expect = 0.0096, P = 0.0095
Identities = 17/27 (62%), Positives = 20/27 (74%), Frame = +3
Query: 381 SCGTGNPIDDCWRCDPNWQRNRKRLAD 461
SC + NPID CWR D NW +NR +LAD
Sbjct: 18 SCYSDNPIDSCWRGDSNWDQNRMKLAD 44
>gi|8101713|gb|AAF72626.1|AF257492_1 (AF257492) Cup s 1 pollen allergen
precursor [Cupressus sempervirens]
Length = 367
Frame 3 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | 367
0 150 300
Plus Strand HSPs:
Score = 104 (36.6 bits), Expect = 0.0096, P = 0.0095
Identities = 17/27 (62%), Positives = 20/27 (74%), Frame = +3
Query: 381 SCGTGNPIDDCWRCDPNWQRNRKRLAD 461
SC + NPID CWR D NW +NR +LAD
Sbjct: 18 SCYSDNPIDSCWRGDSNWDQNRMKLAD 44
>gi|8101715|gb|AAF72627.1|AF257493_1 (AF257493) Cup s 1 pollen allergen
precursor [Cupressus sempervirens]
Length = 367
Frame 3 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | 367
0 150 300
Plus Strand HSPs:
Score = 104 (36.6 bits), Expect = 0.0096, P = 0.0095
Identities = 17/27 (62%), Positives = 20/27 (74%), Frame = +3
Query: 381 SCGTGNPIDDCWRCDPNWQRNRKRLAD 461
SC + NPID CWR D NW +NR +LAD
Sbjct: 18 SCYSDNPIDSCWRGDSNWDQNRMKLAD 44
>gi|8101717|gb|AAF72628.1|AF257494_1 (AF257494) Cup s 1 pollen allergen
precursor [Cupressus sempervirens]
Length = 367
Frame 3 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | 367
0 150 300
Plus Strand HSPs:
Score = 104 (36.6 bits), Expect = 0.0096, P = 0.0095
Identities = 17/27 (62%), Positives = 20/27 (74%), Frame = +3
Query: 381 SCGTGNPIDDCWRCDPNWQRNRKRLAD 461
SC + NPID CWR D NW +NR +LAD
Sbjct: 18 SCYSDNPIDSCWRGDSNWDQNRMKLAD 44
>gi|8101719|gb|AAF72629.1|AF257495_1 (AF257495) Cup s 1 pollen allergen
precursor [Cupressus sempervirens]
Length = 367
Frame 3 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | 367
0 150 300
Plus Strand HSPs:
Score = 104 (36.6 bits), Expect = 0.0096, P = 0.0095
Identities = 17/27 (62%), Positives = 20/27 (74%), Frame = +3
Query: 381 SCGTGNPIDDCWRCDPNWQRNRKRLAD 461
SC + NPID CWR D NW +NR +LAD
Sbjct: 18 SCYSDNPIDSCWRGDSNWDQNRMKLAD 44
>gi|9087163|sp|Q96385|MPA1_CHAOB MAJOR POLLEN ALLERGEN CHA O 1 PRECURSOR
>gi|1514943|dbj|BAA08246.1| (D45404) Chao1 [Chamaecyparis obtusa]
Length = 375
Frame 3 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | 375
0 150 300
Plus Strand HSPs:
Score = 104 (36.6 bits), Expect = 0.0099, P = 0.0098
Identities = 17/27 (62%), Positives = 20/27 (74%), Frame = +3
Query: 381 SCGTGNPIDDCWRCDPNWQRNRKRLAD 461
SC + NPID CWR D NW +NR +LAD
Sbjct: 18 SCFSDNPIDSCWRGDANWDQNRMKLAD 44
>gi|1173367|sp|P18632|SBP_CRYJA SUGI BASIC PROTEIN PRECURSOR (SBP) (MAJOR
ALLERGEN CRY J 1) (CRY J I) >gi|541803|pir||JC2123 major allergen
Cry j I precursor (clone pCCI-2-2) - Japanese cedar
>gi|493632|dbj|BAA05542.1| (D26544) Cry j IA precursor [Cryptomeria
japonica]
Length = 374
Frame 3 hits (HSPs): ____
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 374
0 150 300
__________________
Annotated Domains:
DOMO DM00584: PECTATELYASE 12..357
Entrez glycosylation site: POTENTIAL. 158
Entrez glycosylation site: POTENTIAL. 191
Entrez glycosylation site: POTENTIAL. 293
PFAM pec_lyase: Pectate lyase 96..367
PRINTS AMBALLERGEN1: Pollen allergen AMB motif 45..62
PRINTS AMBALLERGEN2: Pollen allergen AMB motif 68..93
PRINTS AMBALLERGEN3: Pollen allergen AMB motif 104..120
PRINTS AMBALLERGEN4: Pollen allergen AMB motif 170..191
PRINTS AMBALLERGEN5: Pollen allergen AMB motif 250..269
PRINTS AMBALLERGEN6: Pollen allergen AMB motif 272..291
PRINTS AMBALLERGEN7: Pollen allergen AMB motif 315..339
PRINTS AMBALLERGEN8: Pollen allergen AMB motif 345..368
PRODOM PD003200: PEL(2) 1..86
PRODOM PD000974: PEL(9) PLYA(3) PLYD(3) 88..251
PRODOM PD003199: PEL(2) 253..329
PRODOM PD038459: Q96385(1) Q9ZNU7(1) SBP(1) 331..366
__________________
Plus Strand HSPs:
Score = 103 (36.3 bits), Expect = 0.013, P = 0.013
Identities = 17/27 (62%), Positives = 20/27 (74%), Frame = +3
Query: 381 SCGTGNPIDDCWRCDPNWQRNRKRLAD 461
SC + NPID CWR D NW +NR +LAD
Sbjct: 18 SCFSDNPIDSCWRGDSNWAQNRMKLAD 44
>gi|541802|pir||JC2124 major allergen Cry j I precursor (clone pCCI-15) -
Japanese cedar >gi|493634|dbj|BAA05543.1| (D26545) Cry j IB
precursor [Cryptomeria japonica]
Length = 374
Frame 3 hits (HSPs): ____
Annotated Domains: ___ _ _ _ _
__________________________________________________
Database sequence: | | | | 374
0 150 300
__________________
Annotated Domains:
Entrez domain: signal sequence 1..21
Entrez binding site: carbohydrate (Asn) (covale 158
Entrez binding site: carbohydrate (Asn) (covale 191
Entrez binding site: carbohydrate (Asn) (covale 293
Entrez binding site: carbohydrate (Asn) (covale 354
__________________
Plus Strand HSPs:
Score = 103 (36.3 bits), Expect = 0.013, P = 0.013
Identities = 17/27 (62%), Positives = 20/27 (74%), Frame = +3
Query: 381 SCGTGNPIDDCWRCDPNWQRNRKRLAD 461
SC + NPID CWR D NW +NR +LAD
Sbjct: 18 SCFSDNPIDSCWRGDSNWAQNRMKLAD 44
>gi|516728|dbj|BAA07020.1| (D34639) Cry j I precursor [Cryptomeria japonica]
Length = 374
Frame 3 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | 374
0 150 300
Plus Strand HSPs:
Score = 103 (36.3 bits), Expect = 0.013, P = 0.013
Identities = 17/27 (62%), Positives = 20/27 (74%), Frame = +3
Query: 381 SCGTGNPIDDCWRCDPNWQRNRKRLAD 461
SC + NPID CWR D NW +NR +LAD
Sbjct: 18 SCFSDNPIDSCWRGDSNWAQNRMKLAD 44
>gi|8843917|gb|AAF80164.1| (AF151427) pollen major allergen 1-2 [Juniperus
virginiana]
Length = 367
Frame 3 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | 367
0 150 300
Plus Strand HSPs:
Score = 102 (35.9 bits), Expect = 0.017, P = 0.017
Identities = 17/27 (62%), Positives = 20/27 (74%), Frame = +3
Query: 381 SCGTGNPIDDCWRCDPNWQRNRKRLAD 461
SC + NPID CWR D NW +NR +LAD
Sbjct: 18 SCCSDNPIDSCWRGDSNWGQNRMKLAD 44
>gi|8843921|gb|AAF80166.1| (AF151429) pollen major allergen 1-1 [Juniperus
virginiana]
Length = 367
Frame 3 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | 367
0 150 300
Plus Strand HSPs:
Score = 102 (35.9 bits), Expect = 0.017, P = 0.017
Identities = 17/27 (62%), Positives = 20/27 (74%), Frame = +3
Query: 381 SCGTGNPIDDCWRCDPNWQRNRKRLAD 461
SC + NPID CWR D NW +NR +LAD
Sbjct: 18 SCCSDNPIDSCWRGDSNWGQNRMKLAD 44
>gi|11358602|pir||T51456 pectate lyase-like protein - Arabidopsis thaliana
>gi|9755678|emb|CAC01830.1| (AL391146) pectate lyase-like protein
[Arabidopsis thaliana]
Length = 472
Frame 3 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | 472
0 150 300 450
Plus Strand HSPs:
Score = 96 (33.8 bits), Expect = 0.15, P = 0.14
Identities = 27/68 (39%), Positives = 34/68 (50%), Frame = +3
Query: 288 EQAAVANPEEVVS-MVEM--SIQNSTER----RKLGFFS-----CGTGNPIDDCWRCDPN 431
E+ A PEE +EM S NST R + G +S C NPID CWRC +
Sbjct: 74 EEDGDAKPEEEEKEFIEMLGSSTNSTRRSLRGKGKGKWSKLKGPCTASNPIDKCWRCRSD 133
Query: 432 WQRNRKRL 455
W + RK+L
Sbjct: 134 WAKRRKKL 141
>gi|9087167|sp|Q9SCG9|MPA1_CUPAR MAJOR POLLEN ALLERGEN CUP A 1
>gi|6562326|emb|CAB62551.1| (AJ243570) cup a 1 protein [Cupressus
arizonica]
Length = 346
Frame 3 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | 346
0 150 300
Plus Strand HSPs:
Score = 94 (33.1 bits), Expect = 0.17, P = 0.16
Identities = 15/22 (68%), Positives = 17/22 (77%), Frame = +3
Query: 396 NPIDDCWRCDPNWQRNRKRLAD 461
NPID CWR D NW +NR +LAD
Sbjct: 2 NPIDSCWRGDSNWDQNRMKLAD 23
>gi|113478|sp|P28744|MP14_AMBAR POLLEN ALLERGEN AMB A 1.4 PRECURSOR (ANTIGEN E)
(ANTIGEN AMB A I) >gi|539050|pir||D53240 allergen Amb a I.4
precursor - common ragweed >gi|166445|gb|AAA32670.1| (M80562) major
allergen [Ambrosia artemisiifolia]
Length = 392
Frame 3 hits (HSPs): ______
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 392
0 150 300
__________________
Annotated Domains:
Entrez blocked site 1
PFAM pec_lyase: Pectate lyase 120..349
PRINTS AMBALLERGEN1: Pollen allergen AMB motif 71..88
PRINTS AMBALLERGEN2: Pollen allergen AMB motif 95..120
PRINTS AMBALLERGEN3: Pollen allergen AMB motif 131..147
PRINTS AMBALLERGEN4: Pollen allergen AMB motif 194..215
PRINTS AMBALLERGEN5: Pollen allergen AMB motif 270..289
PRINTS AMBALLERGEN6: Pollen allergen AMB motif 292..311
PRINTS AMBALLERGEN7: Pollen allergen AMB motif 333..357
PRINTS AMBALLERGEN8: Pollen allergen AMB motif 363..386
PRODOM PD013758: 1..40
PRODOM PD003200: PEL(2) 44..113
PRODOM PD000974: PEL(9) PLYA(3) PLYD(3) 121..271
PRODOM PD003199: PEL(2) 275..347
PRODOM PD013759: 349..391
__________________
Plus Strand HSPs:
Score = 94 (33.1 bits), Expect = 0.21, P = 0.19
Identities = 19/44 (43%), Positives = 26/44 (59%), Frame = +3
Query: 330 VEMSIQNSTERRKLGFFSCGTGNPIDDCWRCDPNWQRNRKRLAD 461
++ + ++ E R L +CGT N ID CWR +W NRK LAD
Sbjct: 29 LQQILPSANETRSLT--TCGTYNIIDGCWRGKADWAENRKALAD 70
>gi|539051|pir||E53240 allergen Amb a II precursor - common ragweed
Length = 397
Frame 3 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | 397
0 150 300
Plus Strand HSPs:
Score = 93 (32.7 bits), Expect = 0.28, P = 0.25
Identities = 18/38 (47%), Positives = 20/38 (52%), Frame = +3
Query: 348 NSTERRKLGFFSCGTGNPIDDCWRCDPNWQRNRKRLAD 461
N T R G C N ID CWRC P+W NR+ L D
Sbjct: 36 NDTRRSLQG---CEAHNIIDKCWRCKPDWAENRQALGD 70
>gi|113476|sp|P27760|MP12_AMBAR POLLEN ALLERGEN AMB A 1.2 PRECURSOR (ANTIGEN E)
(ANTIGEN AMB A I) >gi|100497|pir||B39099 allergen Amb a I.2 -
common ragweed >gi|166437|gb|AAA32666.1| (M62981) Amb a I.2
[Ambrosia artemisiifolia] >gi|166439|gb|AAA32667.1| (M80559) Amb a
I.2 precursor protein [Ambrosia artemisiifolia]
Length = 398
Frame 3 hits (HSPs): ______
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 398
0 150 300
__________________
Annotated Domains:
DOMO DM00584: PECTATELYASE 39..381
Entrez blocked site 1
PFAM pec_lyase: Pectate lyase 121..359
PRINTS AMBALLERGEN1: Pollen allergen AMB motif 72..89
PRINTS AMBALLERGEN2: Pollen allergen AMB motif 96..121
PRINTS AMBALLERGEN3: Pollen allergen AMB motif 132..148
PRINTS AMBALLERGEN4: Pollen allergen AMB motif 195..216
PRINTS AMBALLERGEN5: Pollen allergen AMB motif 275..294
PRINTS AMBALLERGEN6: Pollen allergen AMB motif 297..316
PRINTS AMBALLERGEN7: Pollen allergen AMB motif 339..363
PRINTS AMBALLERGEN8: Pollen allergen AMB motif 369..392
PRODOM PD013758: 1..40
PRODOM PD003200: PEL(2) 45..114
PRODOM PD000974: PEL(9) PLYA(3) PLYD(3) 133..276
PRODOM PD003199: PEL(2) 278..353
PRODOM PD013759: 355..397
__________________
Plus Strand HSPs:
Score = 93 (32.7 bits), Expect = 0.29, P = 0.25
Identities = 18/44 (40%), Positives = 25/44 (56%), Frame = +3
Query: 330 VEMSIQNSTERRKLGFFSCGTGNPIDDCWRCDPNWQRNRKRLAD 461
VE + ++ E R+ +C N ID CWRC +W NR+ LAD
Sbjct: 29 VEEFLPSANETRR-SLKACEAHNIIDKCWRCKADWANNRQALAD 71
>gi|539048|pir||B53240 allergen Amb a I.2 precursor - common ragweed
Length = 398
Frame 3 hits (HSPs): ______
Annotated Domains: ____________________________________________
__________________________________________________
Database sequence: | | | | 398
0 150 300
__________________
Annotated Domains:
DOMO DM00584: PECTATELYASE 39..381
__________________
Plus Strand HSPs:
Score = 93 (32.7 bits), Expect = 0.29, P = 0.25
Identities = 18/44 (40%), Positives = 25/44 (56%), Frame = +3
Query: 330 VEMSIQNSTERRKLGFFSCGTGNPIDDCWRCDPNWQRNRKRLAD 461
VE + ++ E R+ +C N ID CWRC +W NR+ LAD
Sbjct: 29 VEEFLPSANETRR-SLKACEAHNIIDKCWRCKADWANNRQALAD 71
>gi|1352734|sp|P15721|PE56_LYCES PROBABLE PECTATE LYASE P56 PRECURSOR
>gi|7449061|pir||T07058 pectate lyase (EC 4.2.2.2) LAT56 - tomato
>gi|551656|emb|CAA33524.1| (X15500) P56 protein [Lycopersicon
esculentum]
Length = 398
Frame 3 hits (HSPs): ____
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 398
0 150 300
__________________
Annotated Domains:
DOMO DM00584: PECTATELYASE 36..381
Entrez active site: POTENTIAL. 273
Entrez glycosylation site: POTENTIAL. 135
Entrez glycosylation site: POTENTIAL. 228
PFAM pec_lyase: Pectate lyase 118..314
PRINTS AMBALLERGEN1: Pollen allergen AMB motif 69..86
PRINTS AMBALLERGEN2: Pollen allergen AMB motif 93..118
PRINTS AMBALLERGEN3: Pollen allergen AMB motif 129..145
PRINTS AMBALLERGEN4: Pollen allergen AMB motif 193..214
PRINTS AMBALLERGEN5: Pollen allergen AMB motif 273..292
PRINTS AMBALLERGEN6: Pollen allergen AMB motif 295..314
PRINTS AMBALLERGEN7: Pollen allergen AMB motif 339..363
PRINTS AMBALLERGEN8: Pollen allergen AMB motif 369..392
PRODOM PD117521: PE56_LYCES 1..39
PRODOM PD003200: PEL(2) 41..109
PRODOM PD000974: PEL(9) PLYA(3) PLYD(3) 119..274
PRODOM PD003199: PEL(2) 276..353
PRODOM PD038458: PE56(1) PEL(1) 355..397
__________________
Plus Strand HSPs:
Score = 92 (32.4 bits), Expect = 0.39, P = 0.32
Identities = 14/26 (53%), Positives = 18/26 (69%), Frame = +3
Query: 384 CGTGNPIDDCWRCDPNWQRNRKRLAD 461
C N ID CWRCDP W +R+++AD
Sbjct: 43 CMAVNSIDKCWRCDPFWAEDRQKMAD 68
>gi|7449064|pir||T00856 pectate lyase (EC 4.2.2.2) T20F6.14 - Arabidopsis
thaliana >gi|2947069|gb|AAC05350.1| (AC002521) putative pectate
lyase [Arabidopsis thaliana]
Length = 455
Frame 3 hits (HSPs): ____
__________________________________________________
Database sequence: | | | || 455
0 150 300 450
Plus Strand HSPs:
Score = 92 (32.4 bits), Expect = 0.47, P = 0.37
Identities = 15/22 (68%), Positives = 17/22 (77%), Frame = +3
Query: 396 NPIDDCWRCDPNWQRNRKRLAD 461
N ID CWR D NW +NRK+LAD
Sbjct: 101 NAIDKCWRGDKNWDKNRKKLAD 122
>gi|280372|pir||A44773 pollen allergen I - Japanese cedar (fragment)
Length = 20
Frame 3 hits (HSPs): ________________________________________________
__________________________________________________
Database sequence: | | 20
0
Plus Strand HSPs:
Score = 68 (23.9 bits), Expect = 0.94, P = 0.61
Identities = 11/19 (57%), Positives = 13/19 (68%), Frame = +3
Query: 396 NPIDDCWRCDPNWQRNRKR 452
NPID WR D NW +NR +
Sbjct: 2 NPIDSXWRGDSNWAQNRMK 20
WARNING: HSPs involving 16 database sequences were not reported due to the
limiting value of parameter B = 50.
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.91
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.316 0.126 0.362 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.346 0.153 0.517
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.338 0.143 0.497
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.342 0.147 0.527
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.323 0.132 0.369
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.340 0.147 0.505
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 162 161 10. 75 3 12 22 0.095 34
30 0.10 37
+2 0 162 161 10. 75 3 12 22 0.10 34
30 0.10 37
+1 0 162 161 10. 75 3 12 22 0.10 34
30 0.10 37
-1 0 162 162 10. 75 3 12 22 0.10 34
30 0.10 37
-2 0 162 161 10. 75 3 12 22 0.10 34
30 0.10 37
-3 0 162 161 10. 75 3 12 22 0.10 34
30 0.10 37
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 66
No. of states in DFA: 590 (58 KB)
Total size of DFA: 198 KB (256 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 174.17u 0.99s 175.16t Elapsed: 00:00:30
Total cpu time: 174.21u 1.03s 175.24t Elapsed: 00:00:30
Start: Tue Feb 5 00:57:44 2002 End: Tue Feb 5 00:58:14 2002
WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000