R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
WARNING: Descriptions of 254 database sequences were not reported due to the
limiting value of parameter V = 50.
>gi|3334259|sp|O22607|MSI4_ARATH WD-40 REPEAT PROTEIN MSI4
>gi|2599092|gb|AAD03340.1| (AF028711) WD-40 repeat protein MSI4
[Arabidopsis thaliana]
Length = 457
Frame -2 hits (HSPs): ________________
Annotated Domains: ________________________________________ _________
__________________________________________________
Database sequence: | | | || 457
0 150 300 450
__________________
Annotated Domains:
BLOCKS BL00678: Trp-Asp (WD) repeat proteins pr 11..21
Entrez Repetitive region: WD1. 112..143
Entrez Repetitive region: WD2. 167..198
Entrez Repetitive region: WD3. 240..271
Entrez Repetitive region: WD4. 285..316
Entrez Repetitive region: WD5. 334..365
Entrez Repetitive region: WD6. 389..427
Entrez Domain: POLY-GLY. 418..421
PFAM WD40: WD domain, G-beta repeat 104..143
PFAM WD40: WD domain, G-beta repeat 159..198
PFAM WD40: WD domain, G-beta repeat 232..271
PFAM WD40: WD domain, G-beta repeat 277..316
PFAM WD40: WD domain, G-beta repeat 326..365
PRINTS GPROTEINBRPT1: G-protein beta repeat mot 185..199
PRINTS GPROTEINBRPT2: G-protein beta repeat mot 303..317
PRINTS GPROTEINBRPT3: G-protein beta repeat mot 352..366
PRODOM PD082227: MSI4_ARATH 1..108
PRODOM PD000061: PEX7(6) WD66(5) CORO(5) 110..198
PRODOM PD082229: MSI4_ARATH 200..225
PRODOM PD005157: RB48(4) RB46(4) MSI1(4) 227..280
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 284..315
PRODOM PD005157: RB48(4) RB46(4) MSI1(4) 323..364
PRODOM PD004229: MSI1(3) RB48(2) RB46(2) 376..433
PRODOM PD168534: MSI4_ARATH 435..456
__________________
Minus Strand HSPs:
Score = 454 (159.8 bits), Expect = 4.7e-42, P = 4.7e-42
Identities = 83/97 (85%), Positives = 89/97 (91%), Frame = -2
Query: 294 NGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISS 115
NGVGSPI+KFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDY++V KK +R+ KS
Sbjct: 323 NGVGSPIYKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYDRVSKKSDRAAKS--- 379
Query: 114 PPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCES 4
P GLFFQHAGHRDKVVDFHWNA DPWTIVSVSDDCE+
Sbjct: 380 PAGLFFQHAGHRDKVVDFHWNASDPWTIVSVSDDCET 416
Score = 75 (26.4 bits), Expect = 0.73, P = 0.52
Identities = 18/77 (23%), Positives = 37/77 (48%), Frame = -2
Query: 282 SPIHKFE-GHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISSPPG 106
+P+ K E H A + CV W+P ++ + + D + ++D K+ + + SP
Sbjct: 277 NPVTKVEKAHDADLHCVDWNPHDDNLILTGSADNTVRLFDRRKL------TANGVGSP-- 328
Query: 105 LFFQHAGHRDKVVDFHWN 52
++ GH+ V+ W+
Sbjct: 329 -IYKFEGHKAAVLCVQWS 345
>gi|4191782|gb|AAD10151.1| (AC005917) putative WD-40 repeat protein, MSI4
[Arabidopsis thaliana]
Length = 507
Frame -2 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | 507
0 150 300 450
Minus Strand HSPs:
Score = 454 (159.8 bits), Expect = 4.7e-42, P = 4.7e-42
Identities = 83/97 (85%), Positives = 89/97 (91%), Frame = -2
Query: 294 NGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISS 115
NGVGSPI+KFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDY++V KK +R+ KS
Sbjct: 373 NGVGSPIYKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYDRVSKKSDRAAKS--- 429
Query: 114 PPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCES 4
P GLFFQHAGHRDKVVDFHWNA DPWTIVSVSDDCE+
Sbjct: 430 PAGLFFQHAGHRDKVVDFHWNASDPWTIVSVSDDCET 466
Score = 75 (26.4 bits), Expect = 0.83, P = 0.56
Identities = 18/77 (23%), Positives = 37/77 (48%), Frame = -2
Query: 282 SPIHKFE-GHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISSPPG 106
+P+ K E H A + CV W+P ++ + + D + ++D K+ + + SP
Sbjct: 327 NPVTKVEKAHDADLHCVDWNPHDDNLILTGSADNTVRLFDRRKL------TANGVGSP-- 378
Query: 105 LFFQHAGHRDKVVDFHWN 52
++ GH+ V+ W+
Sbjct: 379 -IYKFEGHKAAVLCVQWS 395
>gi|7487100|pir||T09936 hypothetical protein T16L4.240 - Arabidopsis thaliana
>gi|5123567|emb|CAB45333.1| (AL079344) WD-40 repeat-like protein
[Arabidopsis thaliana] >gi|7269872|emb|CAB79731.1| (AL161575) WD-40
repeat-like protein [Arabidopsis thaliana]
Length = 496
Frame -2 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | 496
0 150 300 450
Minus Strand HSPs:
Score = 430 (151.4 bits), Expect = 1.6e-39, P = 1.6e-39
Identities = 78/98 (79%), Positives = 89/98 (90%), Frame = -2
Query: 297 TNGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSIS 118
+NGVGSP++KFEGH+AAVLCVQWSPDKSSVFGSSAEDGLLNIWD ++VGKK ER+ K+
Sbjct: 361 SNGVGSPVYKFEGHRAAVLCVQWSPDKSSVFGSSAEDGLLNIWDCDRVGKKSERATKT-- 418
Query: 117 SPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCES 4
P GLFFQHAGHRDKVVDFHW+ +PWTIVSVSD+CES
Sbjct: 419 -PDGLFFQHAGHRDKVVDFHWSLLNPWTIVSVSDNCES 455
Score = 73 (25.7 bits), Expect = 1.3, P = 0.73
Identities = 19/77 (24%), Positives = 36/77 (46%), Frame = -2
Query: 282 SPIHKFE-GHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISSPPG 106
SP K E H A + CV W+P +++ + + D + ++D + + + SP
Sbjct: 316 SPAMKVEKAHDADLHCVDWNPHDNNLILTGSADNTVRVFDRRNL------TSNGVGSP-- 367
Query: 105 LFFQHAGHRDKVVDFHWN 52
++ GHR V+ W+
Sbjct: 368 -VYKFEGHRAAVLCVQWS 384
>gi|5701951|emb|CAB52218.1| (Y18517) Y1 protein [Silene latifolia]
Length = 472
Frame -2 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | 472
0 150 300 450
Minus Strand HSPs:
Score = 412 (145.0 bits), Expect = 1.3e-37, P = 1.3e-37
Identities = 72/98 (73%), Positives = 82/98 (83%), Frame = -2
Query: 294 NGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK-KIERSGKSIS 118
+GVGSP+HKF+GH A VLCVQWSP S+FGS+AEDGLLNIWDYEKV K + E GK +
Sbjct: 326 SGVGSPVHKFQGHDAPVLCVQWSPHNRSIFGSAAEDGLLNIWDYEKVSKMETESGGKKSN 385
Query: 117 SPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCES 4
P GLFF+HAGHRDKVVDFHWN+ DPWT+VSVSDDC S
Sbjct: 386 HPAGLFFRHAGHRDKVVDFHWNSIDPWTLVSVSDDCSS 423
Score = 79 (27.8 bits), Expect = 0.28, P = 0.24
Identities = 23/90 (25%), Positives = 43/90 (47%), Frame = -2
Query: 282 SPIHKFE-GHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISSPPG 106
+P+ K E H A + CV W+P ++ + + D +N++D + + SG + SP
Sbjct: 280 TPVTKVEKAHNADLHCVDWNPHDENLILTGSADSSINLFDR----RNLTASG--VGSPVH 333
Query: 105 LFFQHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
F GH V+ W+ ++ S ++D
Sbjct: 334 KF---QGHDAPVLCVQWSPHNRSIFGSAAED 361
>gi|5701955|emb|CAB52219.1| (Y18519) X1 protein [Silene latifolia]
Length = 472
Frame -2 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | | 472
0 150 300 450
Minus Strand HSPs:
Score = 412 (145.0 bits), Expect = 1.3e-37, P = 1.3e-37
Identities = 72/98 (73%), Positives = 82/98 (83%), Frame = -2
Query: 294 NGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK-KIERSGKSIS 118
+GVGSP+HKF+GH A VLCVQWSP S+FGS+AEDGLLNIWDYEKV K + E GK +
Sbjct: 326 SGVGSPVHKFQGHDAPVLCVQWSPHNRSIFGSAAEDGLLNIWDYEKVSKMETESGGKKSN 385
Query: 117 SPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCES 4
P GLFF+HAGHRDKVVDFHWN+ DPWT+VSVSDDC S
Sbjct: 386 HPAGLFFRHAGHRDKVVDFHWNSIDPWTLVSVSDDCSS 423
Score = 79 (27.8 bits), Expect = 0.28, P = 0.24
Identities = 23/90 (25%), Positives = 43/90 (47%), Frame = -2
Query: 282 SPIHKFE-GHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISSPPG 106
+P+ K E H A + CV W+P ++ + + D +N++D + + SG + SP
Sbjct: 280 TPVTKVEKAHNADLHCVDWNPHDENLILTGSADSSINLFDR----RNLTASG--VGSPVH 333
Query: 105 LFFQHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
F GH V+ W+ ++ S ++D
Sbjct: 334 KF---QGHDAPVLCVQWSPHNRSIFGSAAED 361
>gi|422892|pir||S33446 gene 9306 protein - human >gi|297906|emb|CAA50685.1|
(X71810) IEF SSP 9306 [Homo sapiens]
Length = 410
Frame -2 hits (HSPs): ______________________________
Annotated Domains: ___ __ ___
__________________________________________________
Database sequence: | | | | 410
0 150 300
__________________
Annotated Domains:
PROSITE G_BETA_REPEATS: Beta-transducin family T 193..207
PROSITE G_BETA_REPEATS: Beta-transducin family T 289..303
PROSITE G_BETA_REPEATS: Beta-transducin family T 333..347
__________________
Minus Strand HSPs:
Score = 218 (76.7 bits), Expect = 1.6e-16, P = 1.6e-16
Identities = 40/88 (45%), Positives = 52/88 (59%), Frame = -2
Query: 276 IHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISS-PPGLF 100
+H FE HK + VQWSP ++ SS D LN+WD K+G+ E+S + PP L
Sbjct: 310 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELL 367
Query: 99 FQHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
F H GH K+ DF WN +PW I SVS+D
Sbjct: 368 FIHGGHTAKISDFSWNPNEPWVICSVSED 396
Score = 82 (28.9 bits), Expect = 0.11, P = 0.10
Identities = 25/94 (26%), Positives = 43/94 (45%), Frame = -2
Query: 294 NGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISS 115
+G +P + GH+ + W+P+ S S+++D + +WD V K+ GK + +
Sbjct: 164 SGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKE----GKVVDA 219
Query: 114 PPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
+F GH V D W+ SV+DD
Sbjct: 220 KT-IF---TGHTAVVEDVSWHLLHESLFGSVADD 249
Score = 77 (27.1 bits), Expect = 0.38, P = 0.32
Identities = 19/95 (20%), Positives = 38/95 (40%), Frame = -2
Query: 297 TNGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSIS 118
+N P H + H A V C+ ++P + + + D + +WD + K+ S
Sbjct: 259 SNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH----SFE 314
Query: 117 SPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
S H+D++ W+ ++ + S D
Sbjct: 315 S----------HKDEIFQVQWSPHNETILASSGTD 339
Score = 76 (26.8 bits), Expect = 0.49, P = 0.39
Identities = 17/34 (50%), Positives = 19/34 (55%), Frame = -2
Query: 267 FEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 166
F GH A V V W S+FGS A+D L IWD
Sbjct: 223 FTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWD 256
>gi|5032027 ref|NP_005601.1| retinoblastoma-binding protein 4
>gi|1172846|sp|Q09028|RB48_HUMAN CHROMATIN ASSEMBLY FACTOR 1 P48
SUBUNIT (CAF-1 P48 SUBUNIT) (RETINOBLASTOMA BINDING PROTEIN P48)
(RETINOBLASTOMA-BINDING PROTEIN 4) (MSI1 PROTEIN HOMOLOG)
>gi|480008|pir||S36112 G1/S transition control protein-binding
protein IEF-8502 - human >gi|397376|emb|CAA52321.1| (X74262)
retinoblastoma binding protein [Homo sapiens]
>gi|449692|prf||1919423A retinoblastoma-binding protein
[Saccharomyces cerevisiae]
Length = 425
Frame -2 hits (HSPs): ____________________________
__________________________________________________
Database sequence: | | | | 425
0 150 300
Minus Strand HSPs:
Score = 218 (76.7 bits), Expect = 1.9e-16, P = 1.9e-16
Identities = 40/88 (45%), Positives = 52/88 (59%), Frame = -2
Query: 276 IHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISS-PPGLF 100
+H FE HK + VQWSP ++ SS D LN+WD K+G+ E+S + PP L
Sbjct: 310 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELL 367
Query: 99 FQHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
F H GH K+ DF WN +PW I SVS+D
Sbjct: 368 FIHGGHTAKISDFSWNPNEPWVICSVSED 396
Score = 82 (28.9 bits), Expect = 0.12, P = 0.11
Identities = 25/94 (26%), Positives = 43/94 (45%), Frame = -2
Query: 294 NGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISS 115
+G +P + GH+ + W+P+ S S+++D + +WD V K+ GK + +
Sbjct: 164 SGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKE----GKVVDA 219
Query: 114 PPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
+F GH V D W+ SV+DD
Sbjct: 220 KT-IF---TGHTAVVEDVSWHLLHESLFGSVADD 249
Score = 77 (27.1 bits), Expect = 0.40, P = 0.33
Identities = 19/95 (20%), Positives = 38/95 (40%), Frame = -2
Query: 297 TNGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSIS 118
+N P H + H A V C+ ++P + + + D + +WD + K+ S
Sbjct: 259 SNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH----SFE 314
Query: 117 SPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
S H+D++ W+ ++ + S D
Sbjct: 315 S----------HKDEIFQVQWSPHNETILASSGTD 339
Score = 76 (26.8 bits), Expect = 0.52, P = 0.40
Identities = 17/34 (50%), Positives = 19/34 (55%), Frame = -2
Query: 267 FEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 166
F GH A V V W S+FGS A+D L IWD
Sbjct: 223 FTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWD 256
>gi|3309245|gb|AAC26046.1| (AF073787) retinoblastoma A associated protein;
RbAp48 [Xenopus laevis]
Length = 425
Frame -2 hits (HSPs): ____________________________
__________________________________________________
Database sequence: | | | | 425
0 150 300
Minus Strand HSPs:
Score = 218 (76.7 bits), Expect = 1.9e-16, P = 1.9e-16
Identities = 40/88 (45%), Positives = 52/88 (59%), Frame = -2
Query: 276 IHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISS-PPGLF 100
+H FE HK + VQWSP ++ SS D LN+WD K+G+ E+S + PP L
Sbjct: 310 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELL 367
Query: 99 FQHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
F H GH K+ DF WN +PW I SVS+D
Sbjct: 368 FIHGGHTAKISDFSWNPNEPWVICSVSED 396
Score = 82 (28.9 bits), Expect = 0.12, P = 0.11
Identities = 25/94 (26%), Positives = 43/94 (45%), Frame = -2
Query: 294 NGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISS 115
+G +P + GH+ + W+P+ S S+++D + +WD V K+ GK + +
Sbjct: 164 SGECNPNLRLRGHQKEGYGLSWNPNLSGNLLSASDDHTICLWDISAVPKE----GKVVDA 219
Query: 114 PPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
+F GH V D W+ SV+DD
Sbjct: 220 KT-IF---TGHTAVVEDVSWHLLHESLFGSVADD 249
Score = 77 (27.1 bits), Expect = 0.40, P = 0.33
Identities = 19/95 (20%), Positives = 38/95 (40%), Frame = -2
Query: 297 TNGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSIS 118
+N P H + H A V C+ ++P + + + D + +WD + K+ S
Sbjct: 259 SNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH----SFE 314
Query: 117 SPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
S H+D++ W+ ++ + S D
Sbjct: 315 S----------HKDEIFQVQWSPHNETILASSGTD 339
Score = 76 (26.8 bits), Expect = 0.52, P = 0.40
Identities = 17/34 (50%), Positives = 19/34 (55%), Frame = -2
Query: 267 FEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 166
F GH A V V W S+FGS A+D L IWD
Sbjct: 223 FTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWD 256
>gi|5163126|gb|AAD40568.1|AF097750_1 (AF097750) chromatin assembly factor 1 p48
subunit [Gallus gallus]
Length = 425
Frame -2 hits (HSPs): ____________________________
__________________________________________________
Database sequence: | | | | 425
0 150 300
Minus Strand HSPs:
Score = 218 (76.7 bits), Expect = 1.9e-16, P = 1.9e-16
Identities = 40/88 (45%), Positives = 52/88 (59%), Frame = -2
Query: 276 IHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISS-PPGLF 100
+H FE HK + VQWSP ++ SS D LN+WD K+G+ E+S + PP L
Sbjct: 310 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELL 367
Query: 99 FQHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
F H GH K+ DF WN +PW I SVS+D
Sbjct: 368 FIHGGHTAKISDFSWNPNEPWVICSVSED 396
Score = 82 (28.9 bits), Expect = 0.12, P = 0.11
Identities = 25/94 (26%), Positives = 43/94 (45%), Frame = -2
Query: 294 NGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISS 115
+G +P + GH+ + W+P+ S S+++D + +WD V K+ GK + +
Sbjct: 164 SGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKE----GKVVDA 219
Query: 114 PPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
+F GH V D W+ SV+DD
Sbjct: 220 KT-IF---TGHTAVVEDVSWHLLHESLFGSVADD 249
Score = 77 (27.1 bits), Expect = 0.40, P = 0.33
Identities = 19/95 (20%), Positives = 38/95 (40%), Frame = -2
Query: 297 TNGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSIS 118
+N P H + H A V C+ ++P + + + D + +WD + K+ S
Sbjct: 259 SNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH----SFE 314
Query: 117 SPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
S H+D++ W+ ++ + S D
Sbjct: 315 S----------HKDEIFQVQWSPHNETILASSGTD 339
Score = 76 (26.8 bits), Expect = 0.52, P = 0.40
Identities = 17/34 (50%), Positives = 19/34 (55%), Frame = -2
Query: 267 FEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 166
F GH A V V W S+FGS A+D L IWD
Sbjct: 223 FTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWD 256
>gi|6677681 ref|NP_033056.1| retinoblastoma binding protein 4
>gi|2494893|sp|Q60972|RB48_MOUSE CHROMATIN ASSEMBLY FACTOR 1 P48
SUBUNIT (CAF-1 P48 SUBUNIT) (RETINOBLASTOMA BINDING PROTEIN P48)
(RETINOBLASTOMA-BINDING PROTEIN 4) >gi|2137734|pir||I49366 G1/S
transition control protein-binding protein RbAp48 - mouse
>gi|1016275|gb|AAC52275.1| (U35141) retinoblastoma-binding protein
mRbAp48 [Mus musculus] >gi|1585656|prf||2201425A
retinoblastoma-binding protein [Mus musculus]
Length = 461
Frame -2 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | | 461
0 150 300 450
Minus Strand HSPs:
Score = 218 (76.7 bits), Expect = 2.4e-16, P = 2.4e-16
Identities = 40/88 (45%), Positives = 52/88 (59%), Frame = -2
Query: 276 IHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISS-PPGLF 100
+H FE HK + VQWSP ++ SS D LN+WD K+G+ E+S + PP L
Sbjct: 310 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGE--EQSPEDAEDGPPELL 367
Query: 99 FQHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
F H GH K+ DF WN +PW I SVS+D
Sbjct: 368 FIHGGHTAKISDFSWNPNEPWVICSVSED 396
Score = 86 (30.3 bits), Expect = 0.048, P = 0.047
Identities = 26/94 (27%), Positives = 43/94 (45%), Frame = -2
Query: 294 NGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISS 115
+G +P + GH+ + W+P+ S S+++D + +WD V KK GK + +
Sbjct: 164 SGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKK----GKVVDA 219
Query: 114 PPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
+F GH V D W+ SV+DD
Sbjct: 220 KT-IF---TGHTAVVEDVSWHLLHESLFGSVADD 249
Score = 77 (27.1 bits), Expect = 0.45, P = 0.36
Identities = 19/95 (20%), Positives = 38/95 (40%), Frame = -2
Query: 297 TNGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSIS 118
+N P H + H A V C+ ++P + + + D + +WD + K+ S
Sbjct: 259 SNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH----SFE 314
Query: 117 SPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
S H+D++ W+ ++ + S D
Sbjct: 315 S----------HKDEIFQVQWSPHNETILASSGTD 339
Score = 76 (26.8 bits), Expect = 0.57, P = 0.44
Identities = 17/34 (50%), Positives = 19/34 (55%), Frame = -2
Query: 267 FEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 166
F GH A V V W S+FGS A+D L IWD
Sbjct: 223 FTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWD 256
>gi|4506439 ref|NP_002884.1| retinoblastoma-binding protein 7
>gi|2494891|sp|Q16576|RB46_HUMAN HISTONE ACETYLTRANSFERASE TYPE B
SUBUNIT 2 (RETINOBLASTOMA BINDING PROTEIN P46)
(RETINOBLASTOMA-BINDING PROTEIN 7) >gi|2136110|pir||I39181 G1/S
transition control protein-binding protein RbAp46 - human
>gi|297904|emb|CAA51360.1| (X72841) IEF 7442 [Homo sapiens]
>gi|1016273|gb|AAC50231.1| (U35143) retinoblastoma-binding protein
RbAp46 [Homo sapiens] >gi|3641330|gb|AAC36349.1| (AF090306)
retinoblastoma binding protein [Rattus norvegicus]
>gi|1585658|prf||2201425C retinoblastoma-binding protein [Homo
sapiens]
Length = 425
Frame -2 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | 425
0 150 300
Minus Strand HSPs:
Score = 214 (75.3 bits), Expect = 5.1e-16, P = 5.1e-16
Identities = 39/88 (44%), Positives = 51/88 (57%), Frame = -2
Query: 276 IHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISS-PPGLF 100
+H FE HK + V WSP ++ SS D LN+WD K+G+ E+S + PP L
Sbjct: 309 LHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGE--EQSAEDAEDGPPELL 366
Query: 99 FQHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
F H GH K+ DF WN +PW I SVS+D
Sbjct: 367 FIHGGHTAKISDFSWNPNEPWVICSVSED 395
Score = 80 (28.2 bits), Expect = 0.19, P = 0.17
Identities = 19/95 (20%), Positives = 39/95 (41%), Frame = -2
Query: 297 TNGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSIS 118
+N P H + H A V C+ ++P + + + D + +WD + K+
Sbjct: 258 SNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHT------ 311
Query: 117 SPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
F+ H+D++ HW+ ++ + S D
Sbjct: 312 ------FE--SHKDEIFQVHWSPHNETILASSGTD 338
Score = 76 (26.8 bits), Expect = 0.52, P = 0.40
Identities = 17/34 (50%), Positives = 19/34 (55%), Frame = -2
Query: 267 FEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 166
F GH A V V W S+FGS A+D L IWD
Sbjct: 222 FTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWD 255
>gi|6677683 ref|NP_033057.1| retinoblastoma binding protein 7
>gi|2494892|sp|Q60973|RB46_MOUSE HISTONE ACETYLTRANSFERASE TYPE B
SUBUNIT 2 (RETINOBLASTOMA BINDING PROTEIN P46)
(RETINOBLASTOMA-BINDING PROTEIN 7) >gi|2137733|pir||I49367 G1/S
transition control protein-binding protein RbAp46 - mouse
>gi|1016277|gb|AAC52276.1| (U35142) retinoblastoma-binding protein
mRbAp46 [Mus musculus] >gi|1585657|prf||2201425B
retinoblastoma-binding protein [Mus musculus]
Length = 425
Frame -2 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | 425
0 150 300
Minus Strand HSPs:
Score = 214 (75.3 bits), Expect = 5.1e-16, P = 5.1e-16
Identities = 39/88 (44%), Positives = 51/88 (57%), Frame = -2
Query: 276 IHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISS-PPGLF 100
+H FE HK + V WSP ++ SS D LN+WD K+G+ E+S + PP L
Sbjct: 309 LHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGE--EQSAEDAEDGPPELL 366
Query: 99 FQHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
F H GH K+ DF WN +PW I SVS+D
Sbjct: 367 FIHGGHTAKISDFSWNPNEPWVICSVSED 395
Score = 80 (28.2 bits), Expect = 0.19, P = 0.17
Identities = 19/95 (20%), Positives = 39/95 (41%), Frame = -2
Query: 297 TNGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSIS 118
+N P H + H A V C+ ++P + + + D + +WD + K+
Sbjct: 258 SNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHT------ 311
Query: 117 SPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
F+ H+D++ HW+ ++ + S D
Sbjct: 312 ------FE--SHKDEIFQVHWSPHNETILASSGTD 338
Score = 76 (26.8 bits), Expect = 0.52, P = 0.40
Identities = 17/34 (50%), Positives = 19/34 (55%), Frame = -2
Query: 267 FEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 166
F GH A V V W S+FGS A+D L IWD
Sbjct: 222 FTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWD 255
>gi|3121830|sp|Q24572|CAF1_DROME CHROMATIN ASSEMBLY FACTOR 1 P55 SUBUNIT (CAF-1
P55 SUBUNIT) (DCAF-1) (NUCLEOSOME REMODELING FACTOR 55 KDA SUBUNIT)
(NURF-55) >gi|1407828|gb|AAB37257.1| (U62388) chromatin assembly
factor 1 p55 subunit [Drosophila melanogaster]
>gi|7299974|gb|AAF55146.1| (AE003708) Caf1 gene product [Drosophila
melanogaster]
Length = 430
Frame -2 hits (HSPs): _____________________
Annotated Domains: _______________________________________________
__________________________________________________
Database sequence: | | | | 430
0 150 300
__________________
Annotated Domains:
BLOCKS BL00678: Trp-Asp (WD) repeat proteins pr 396..406
Entrez Repetitive region: WD1. 126..159
Entrez Repetitive region: WD2. 179..210
Entrez Repetitive region: WD3. 229..260
Entrez Repetitive region: WD4. 275..306
Entrez Repetitive region: WD5. 319..350
Entrez Repetitive region: WD6. 376..407
PFAM WD40: WD domain, G-beta repeat 171..210
PFAM WD40: WD domain, G-beta repeat 221..260
PFAM WD40: WD domain, G-beta repeat 267..306
PFAM WD40: WD domain, G-beta repeat 311..350
PFAM WD40: WD domain, G-beta repeat 368..407
PRINTS GPROTEINBRPT1: G-protein beta repeat mot 197..211
PRINTS GPROTEINBRPT2: G-protein beta repeat mot 293..307
PRINTS GPROTEINBRPT3: G-protein beta repeat mot 337..351
PRODOM PD009383: RB48(2) RB46(2) MSI1(2) 10..38
PRODOM PD004554: RB48(2) RB46(2) MSI1(2) 40..123
PRODOM PD187789: RB48(2) CAF1(1) 125..175
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 177..210
PRODOM PD005157: RB48(4) RB46(4) MSI1(4) 212..270
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 272..306
PRODOM PD005157: RB48(4) RB46(4) MSI1(4) 314..350
PRODOM PD004229: MSI1(3) RB48(2) RB46(2) 354..412
PROSITE G_BETA_REPEATS: Beta-transducin family T 197..211
PROSITE G_BETA_REPEATS: Beta-transducin family T 293..307
PROSITE G_BETA_REPEATS: Beta-transducin family T 337..351
__________________
Minus Strand HSPs:
Score = 213 (75.0 bits), Expect = 6.9e-16, P = 6.9e-16
Identities = 37/88 (42%), Positives = 52/88 (59%), Frame = -2
Query: 276 IHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISSPPGLFF 97
+H FE HK + VQWSP ++ SS D L++WD K+G++ + + + PP L F
Sbjct: 314 LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEE-QSTEDAEDGPPELLF 372
Query: 96 QHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
H GH K+ DF WN +PW I SVS+D
Sbjct: 373 IHGGHTAKISDFSWNPNEPWIICSVSED 400
Score = 75 (26.4 bits), Expect = 0.67, P = 0.49
Identities = 17/34 (50%), Positives = 19/34 (55%), Frame = -2
Query: 267 FEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 166
F GH A V V W S+FGS A+D L IWD
Sbjct: 227 FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWD 260
Score = 75 (26.4 bits), Expect = 0.67, P = 0.49
Identities = 19/94 (20%), Positives = 37/94 (39%), Frame = -2
Query: 294 NGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISS 115
N P H + H A V C+ ++P + + + D + +WD + K+ S S
Sbjct: 264 NNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH----SFES 319
Query: 114 PPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
H+D++ W+ ++ + S D
Sbjct: 320 ----------HKDEIFQVQWSPHNETILASSGTD 343
>gi|3123169|sp|P90916|RBA2_CAEEL TRP-ASP REPEATS CONTAINING PROTEIN RBA-2
Length = 385
Frame -2 hits (HSPs): _______________________________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | 385
0 150 300
__________________
Annotated Domains:
Entrez Repetitive region: WD1. 86..119
Entrez Repetitive region: WD2. 138..169
Entrez Repetitive region: WD3. 188..219
Entrez Repetitive region: WD4. 231..262
Entrez Repetitive region: WD5. 275..306
Entrez Repetitive region: WD6. 332..363
PFAM WD40: WD domain, G-beta repeat 130..169
PFAM WD40: WD domain, G-beta repeat 180..219
PFAM WD40: WD domain, G-beta repeat 223..262
PFAM WD40: WD domain, G-beta repeat 267..306
PFAM WD40: WD domain, G-beta repeat 324..363
PRINTS GPROTEINBRPT1: G-protein beta repeat mot 156..170
PRINTS GPROTEINBRPT2: G-protein beta repeat mot 249..263
PRINTS GPROTEINBRPT3: G-protein beta repeat mot 293..307
PRODOM PD004554: RB48(2) RB46(2) MSI1(2) 1..83
PRODOM PD000061: PEX7(6) WD66(5) CORO(5) 85..169
PRODOM PD005157: RB48(4) RB46(4) MSI1(4) 171..226
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 232..262
PRODOM PD005157: RB48(4) RB46(4) MSI1(4) 270..306
PRODOM PD004229: MSI1(3) RB48(2) RB46(2) 310..368
PROSITE G_BETA_REPEATS: Beta-transducin family T 249..263
PROSITE G_BETA_REPEATS: Beta-transducin family T 293..307
__________________
Minus Strand HSPs:
Score = 208 (73.2 bits), Expect = 1.7e-15, P = 1.7e-15
Identities = 35/88 (39%), Positives = 51/88 (57%), Frame = -2
Query: 276 IHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISSPPGLFF 97
+H FE H+ + VQWSP ++ SS D L++WD K+G+ + + + PP L F
Sbjct: 270 LHSFESHRDEIFQVQWSPHNETILASSGTDKRLHVWDLSKIGED-QSAEDAEDGPPELLF 328
Query: 96 QHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
H GH K+ DF WN +PW + SVS+D
Sbjct: 329 IHGGHTAKISDFSWNPNEPWVVCSVSED 356
Score = 74 (26.0 bits), Expect = 0.74, P = 0.52
Identities = 24/77 (31%), Positives = 33/77 (42%), Frame = -2
Query: 267 FEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV--GKKIERSGKSIS----SPPG 106
F+GH++ V V W VFGS +D L IWD G I+ ++ +P
Sbjct: 186 FKGHESVVEDVAWHVLHDGVFGSVGDDKKLLIWDVRTSTPGHCIDAHSAEVNCLAFNPYS 245
Query: 105 LFFQHAGHRDKVVDFHWN 52
F G DK V W+
Sbjct: 246 EFILATGSADKTVAL-WD 262
Score = 71 (25.0 bits), Expect = 1.6, P = 0.79
Identities = 19/90 (21%), Positives = 37/90 (41%), Frame = -2
Query: 282 SPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISSPPGL 103
+P H + H A V C+ ++P + + + D + +WD + K+ S S
Sbjct: 224 TPGHCIDAHSAEVNCLAFNPYSEFILATGSADKTVALWDLRNLRMKLH----SFES---- 275
Query: 102 FFQHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
HRD++ W+ ++ + S D
Sbjct: 276 ------HRDEIFQVQWSPHNETILASSGTD 299
Score = 70 (24.6 bits), Expect = 6.0, P = 1.0
Identities = 22/90 (24%), Positives = 39/90 (43%), Frame = -2
Query: 282 SPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKI--ERSGKSISSPP 109
+P+ + +GH + W+P+K + S+++D + WD + + E K +
Sbjct: 131 NPLIRLKGHTKEGYGLSWNPNKEGLILSASDDQTVCHWDIN-ANQNVAGELQAKDV---- 185
Query: 108 GLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
F+ GH V D W+ SV DD
Sbjct: 186 ---FK--GHESVVEDVAWHVLHDGVFGSVGDD 212
>gi|3122388|sp|O22468|MSI2_ARATH WD-40 REPEAT PROTEIN MSI2
>gi|2394231|gb|AAB70243.1| (AF016847) WD-40 repeat protein
[Arabidopsis thaliana] >gi|4581121|gb|AAD24611.1|AC005825_18
(AC005825) putative WD-40 repeat protein, MSI2 [Arabidopsis
thaliana]
Length = 415
Frame -2 hits (HSPs): _________ ____________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | 415
0 150 300
__________________
Annotated Domains:
BLOCKS BL00678: Trp-Asp (WD) repeat proteins pr 186..196
PFAM WD40: WD domain, G-beta repeat 158..197
PFAM WD40: WD domain, G-beta repeat 207..246
PFAM WD40: WD domain, G-beta repeat 250..289
PFAM WD40: WD domain, G-beta repeat 294..333
PFAM WD40: WD domain, G-beta repeat 353..392
PRINTS GPROTEINBRPT1: G-protein beta repeat mot 184..198
PRINTS GPROTEINBRPT2: G-protein beta repeat mot 276..290
PRINTS GPROTEINBRPT3: G-protein beta repeat mot 320..334
PRODOM PD021197: MSI2(1) MSI3(1) O49612(1) 2..31
PRODOM PD004554: RB48(2) RB46(2) MSI1(2) 33..91
PRODOM PD197270: MSI2_ARATH 93..114
PRODOM PD000061: PEX7(6) WD66(5) CORO(5) 116..197
PRODOM PD005157: RB48(4) RB46(4) MSI1(4) 199..249
PRODOM PD152027: MSI2(1) MSI3(1) O49612(1) 251..294
PRODOM PD005157: RB48(4) RB46(4) MSI1(4) 296..335
PRODOM PD004229: MSI1(3) RB48(2) RB46(2) 337..398
PROSITE G_BETA_REPEATS: Beta-transducin family T 184..198
PROSITE G_BETA_REPEATS: Beta-transducin family T 320..334
__________________
Minus Strand HSPs:
Score = 208 (73.2 bits), Expect = 2.2e-15, P = 2.2e-15
Identities = 36/93 (38%), Positives = 54/93 (58%), Frame = -2
Query: 288 VGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK-IERSGKSISSP 112
+ +P+H H+ V V+W P+ +V SS ED L +WD +VG++ +E + P
Sbjct: 293 LNAPLHVMSSHEGEVFQVEWDPNHETVLASSGEDRRLMVWDLNRVGEEQLEIELDAEDGP 352
Query: 111 PGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
P L F H GH+ K+ DF WN +PW I SV++D
Sbjct: 353 PELLFSHGGHKAKISDFAWNKNEPWVIASVAED 385
Score = 94 (33.1 bits), Expect = 0.0057, P = 0.0057
Identities = 16/34 (47%), Positives = 23/34 (67%), Frame = -2
Query: 267 FEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 166
+EGH++A+ V W ++FGS+ EDG L IWD
Sbjct: 213 YEGHESAIADVSWHMKNENLFGSAGEDGRLVIWD 246
Score = 89 (31.3 bits), Expect = 0.020, P = 0.020
Identities = 24/85 (28%), Positives = 40/85 (47%), Frame = -2
Query: 267 FEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISSPPGLFFQHA 88
+EGH++A+ V W ++FGS+ EDG L IWD R+ + + Q
Sbjct: 213 YEGHESAIADVSWHMKNENLFGSAGEDGRLVIWD--------TRTNQ-------MQHQVK 257
Query: 87 GHRDKVVDFHWNAYDPWTIVSVSDD 13
H +V +N ++ W + + S D
Sbjct: 258 VHEREVNYLSFNPFNEWVLATASSD 282
>gi|7505398|pir||T23391 hypothetical protein K07A1.12 - Caenorhabditis elegans
>gi|3878342|emb|CAB03178.1| (Z81097) Similarity to Drosophila
chromatin assembly factor 1 P55 subunit (TR:Q24572)~cDNA EST
EMBL:C07605 comes from this gene; cDNA EST EMBL:C09018 comes from
this gene~cDNA EST EMBL:C10119 comes from this gene; cDNA EST
EMBL:C12046 comes from this g> >gi|3880742|emb|CAA19477.1|
(AL023833) Similarity to Drosophila chromatin assembly factor 1 P55
subunit (TR:Q24572)~cDNA EST EMBL:C07605 comes from this gene; cDNA
EST EMBL:C09018 comes from this gene~cDNA EST EMBL:C10119 comes
from this gene; cDNA EST EMBL:C12046 comes from this>
>gi|4164608|gb|AAD05571.1| (AF116530) synthetic multivulva protein
LIN-53 p48 [Caenorhabditis elegans]
Length = 417
Frame -2 hits (HSPs): ____________________________
__________________________________________________
Database sequence: | | | | 417
0 150 300
Minus Strand HSPs:
Score = 208 (73.2 bits), Expect = 2.2e-15, P = 2.2e-15
Identities = 35/88 (39%), Positives = 51/88 (57%), Frame = -2
Query: 276 IHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISSPPGLFF 97
+H FE H+ + VQWSP ++ SS D L++WD K+G+ + + + PP L F
Sbjct: 302 LHSFESHRDEIFQVQWSPHNETILASSGTDKRLHVWDLSKIGED-QSAEDAEDGPPELLF 360
Query: 96 QHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
H GH K+ DF WN +PW + SVS+D
Sbjct: 361 IHGGHTAKISDFSWNPNEPWVVCSVSED 388
Score = 74 (26.0 bits), Expect = 0.83, P = 0.56
Identities = 24/77 (31%), Positives = 33/77 (42%), Frame = -2
Query: 267 FEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV--GKKIERSGKSIS----SPPG 106
F+GH++ V V W VFGS +D L IWD G I+ ++ +P
Sbjct: 218 FKGHESVVEDVAWHVLHDGVFGSVGDDKKLLIWDVRTSTPGHCIDAHSAEVNCLAFNPYS 277
Query: 105 LFFQHAGHRDKVVDFHWN 52
F G DK V W+
Sbjct: 278 EFILATGSADKTVAL-WD 294
Score = 71 (25.0 bits), Expect = 1.7, P = 0.82
Identities = 19/90 (21%), Positives = 37/90 (41%), Frame = -2
Query: 282 SPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISSPPGL 103
+P H + H A V C+ ++P + + + D + +WD + K+ S S
Sbjct: 256 TPGHCIDAHSAEVNCLAFNPYSEFILATGSADKTVALWDLRNLRMKLH----SFES---- 307
Query: 102 FFQHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
HRD++ W+ ++ + S D
Sbjct: 308 ------HRDEIFQVQWSPHNETILASSGTD 331
Score = 70 (24.6 bits), Expect = 6.7, P = 1.0
Identities = 22/90 (24%), Positives = 39/90 (43%), Frame = -2
Query: 282 SPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKI--ERSGKSISSPP 109
+P+ + +GH + W+P+K + S+++D + WD + + E K +
Sbjct: 163 NPLIRLKGHTKEGYGLSWNPNKEGLILSASDDQTVCHWDIN-ANQNVAGELQAKDV---- 217
Query: 108 GLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
F+ GH V D W+ SV DD
Sbjct: 218 ---FK--GHESVVEDVAWHVLHDGVFGSVGDD 244
>gi|7444287|pir||T05775 G1/S transition control protein-binding protein MSI3 -
Arabidopsis thaliana >gi|2924516|emb|CAA17770.1| (AL022023) WD-40
repeat protein (MSI3) [Arabidopsis thaliana]
>gi|7270456|emb|CAB80222.1| (AL161586) WD-40 repeat protein (MSI3)
[Arabidopsis thaliana]
Length = 424
Frame -2 hits (HSPs): _______________________
__________________________________________________
Database sequence: | | | | 424
0 150 300
Minus Strand HSPs:
Score = 202 (71.1 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 36/91 (39%), Positives = 53/91 (58%), Frame = -2
Query: 282 SPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG-KKIERSGKSISSPPG 106
+P+H H+ V V+W P+ +V SS ED L +WD +VG +++E + PP
Sbjct: 296 APLHVLSKHEGEVFQVEWDPNHETVLASSGEDRRLMVWDINRVGDEQLEIELDAEDGPPE 355
Query: 105 LFFQHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
L F H GH+ K+ DF WN +PW I SV++D
Sbjct: 356 LLFSHGGHKAKISDFAWNKDEPWVISSVAED 386
Score = 95 (33.4 bits), Expect = 0.0046, P = 0.0046
Identities = 17/44 (38%), Positives = 28/44 (63%), Frame = -2
Query: 297 TNGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 166
T+ V +P+H +EGH++ + V W ++FGS+ +D L IWD
Sbjct: 204 TDKVLNPMHVYEGHQSIIEDVAWHMKNENIFGSAGDDCQLVIWD 247
Score = 89 (31.3 bits), Expect = 0.020, P = 0.020
Identities = 23/95 (24%), Positives = 44/95 (46%), Frame = -2
Query: 297 TNGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSIS 118
T+ V +P+H +EGH++ + V W ++FGS+ +D L IWD +++ K
Sbjct: 204 TDKVLNPMHVYEGHQSIIEDVAWHMKNENIFGSAGDDCQLVIWDLRT--NQMQHQVKV-- 259
Query: 117 SPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
H ++ +N ++ W + + S D
Sbjct: 260 -----------HEREINYLSFNPFNEWVLATASSD 283
>gi|3122389|sp|O22469|MSI3_ARATH WD-40 REPEAT PROTEIN MSI3
>gi|2394233|gb|AAB70244.1| (AF016848) WD-40 repeat protein
[Arabidopsis thaliana]
Length = 424
Frame -2 hits (HSPs): _______________________
Annotated Domains: _______________________________________________
__________________________________________________
Database sequence: | | | | 424
0 150 300
__________________
Annotated Domains:
BLOCKS BL00678: Trp-Asp (WD) repeat proteins pr 187..197
PFAM WD40: WD domain, G-beta repeat 159..198
PFAM WD40: WD domain, G-beta repeat 208..247
PFAM WD40: WD domain, G-beta repeat 251..290
PFAM WD40: WD domain, G-beta repeat 295..334
PFAM WD40: WD domain, G-beta repeat 354..393
PRINTS GPROTEINBRPT1: G-protein beta repeat mot 185..199
PRINTS GPROTEINBRPT2: G-protein beta repeat mot 277..291
PRINTS GPROTEINBRPT3: G-protein beta repeat mot 321..335
PRODOM PD021197: MSI2(1) MSI3(1) O49612(1) 3..32
PRODOM PD004554: RB48(2) RB46(2) MSI1(2) 34..92
PRODOM PD189219: MSI3(1) O49612(1) 94..115
PRODOM PD000061: PEX7(6) WD66(5) CORO(5) 117..198
PRODOM PD005157: RB48(4) RB46(4) MSI1(4) 200..250
PRODOM PD152027: MSI2(1) MSI3(1) O49612(1) 252..295
PRODOM PD005157: RB48(4) RB46(4) MSI1(4) 297..336
PRODOM PD004229: MSI1(3) RB48(2) RB46(2) 338..399
PROSITE G_BETA_REPEATS: Beta-transducin family T 185..199
PROSITE G_BETA_REPEATS: Beta-transducin family T 321..335
__________________
Minus Strand HSPs:
Score = 202 (71.1 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 36/91 (39%), Positives = 53/91 (58%), Frame = -2
Query: 282 SPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVG-KKIERSGKSISSPPG 106
+P+H H+ V V+W P+ +V SS ED L +WD +VG +++E + PP
Sbjct: 296 APLHVLSKHEGEVFQVEWDPNHETVLASSGEDRRLMVWDINRVGDEQLEIELDAEDGPPE 355
Query: 105 LFFQHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
L F H GH+ K+ DF WN +PW I SV++D
Sbjct: 356 LLFSHGGHKAKISDFAWNKDEPWVISSVAED 386
Score = 91 (32.0 bits), Expect = 0.012, P = 0.012
Identities = 16/44 (36%), Positives = 28/44 (63%), Frame = -2
Query: 297 TNGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 166
T+ V +P+H +EGH++ + + W ++FGS+ +D L IWD
Sbjct: 204 TDKVLNPMHVYEGHQSIIEELAWHMKNENIFGSAGDDCQLVIWD 247
Score = 85 (29.9 bits), Expect = 0.055, P = 0.054
Identities = 22/95 (23%), Positives = 44/95 (46%), Frame = -2
Query: 297 TNGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSIS 118
T+ V +P+H +EGH++ + + W ++FGS+ +D L IWD +++ K
Sbjct: 204 TDKVLNPMHVYEGHQSIIEELAWHMKNENIFGSAGDDCQLVIWDLRT--NQMQHQVKV-- 259
Query: 117 SPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
H ++ +N ++ W + + S D
Sbjct: 260 -----------HEREINYLSFNPFNEWVLATASSD 283
>gi|7492472|pir||T41054 probable chromosome assembly factor, beta transducin -
fission yeast (Schizosaccharomyces pombe)
>gi|3451311|emb|CAA20448.1| (AL031324) beta transducin, putative
chromosome assembly fa ctor [Schizosaccharomyces pombe]
Length = 430
Frame -2 hits (HSPs): ___________ _____________
__________________________________________________
Database sequence: | | | | 430
0 150 300
Minus Strand HSPs:
Score = 166 (58.4 bits), Expect = 9.5e-11, P = 9.5e-11
Identities = 30/88 (34%), Positives = 48/88 (54%), Frame = -2
Query: 276 IHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISSPPGLFF 97
+H EGH+ V ++WSP + SS+ D + IWD EK+G++ SP L F
Sbjct: 318 LHTLEGHEDEVYGLEWSPHDEPILASSSTDRRVCIWDLEKIGEEQTPEDAEDGSPE-LLF 376
Query: 96 QHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
H GH +++ +F W + W + S++DD
Sbjct: 377 MHGGHTNRISEFSWCPNERWVVGSLADD 404
Score = 95 (33.4 bits), Expect = 0.0047, P = 0.0047
Identities = 26/96 (27%), Positives = 42/96 (43%), Frame = -2
Query: 297 TNGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSIS 118
T G P +GH A + W+P+ + AED ++ +WD + + S +
Sbjct: 168 TTGEALPQAVLKGHTAEGFGLCWNPNLPGNLATGAEDQVICLWDVQT--QSFTSSETKVI 225
Query: 117 SPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDC 10
SP + +H D V D ++ + SVSDDC
Sbjct: 226 SPIAKYHRHT---DIVNDVQFHPQHEALLASVSDDC 258
Score = 71 (25.0 bits), Expect = 1.8, P = 0.84
Identities = 16/46 (34%), Positives = 23/46 (50%), Frame = -2
Query: 285 GSP--IHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 154
GSP + GH + W P++ V GS A+D +L IW +V
Sbjct: 370 GSPELLFMHGGHTNRISEFSWCPNERWVVGSLADDNILQIWSPSRV 415
>gi|3122387|sp|O22467|MSI1_ARATH WD-40 REPEAT PROTEIN MSI1
>gi|2394229|gb|AAB70242.1| (AF016846) WD-40 repeat protein
[Arabidopsis thaliana]
Length = 424
Frame -2 hits (HSPs): ___________ ____________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | 424
0 150 300
__________________
Annotated Domains:
BLOCKS BL00678: Trp-Asp (WD) repeat proteins pr 196..206
PFAM WD40: WD domain, G-beta repeat 168..207
PFAM WD40: WD domain, G-beta repeat 217..256
PFAM WD40: WD domain, G-beta repeat 263..302
PFAM WD40: WD domain, G-beta repeat 307..346
PFAM WD40: WD domain, G-beta repeat 364..403
PRINTS GPROTEINBRPT1: G-protein beta repeat mot 194..208
PRINTS GPROTEINBRPT2: G-protein beta repeat mot 289..303
PRINTS GPROTEINBRPT3: G-protein beta repeat mot 333..347
PRODOM PD009383: RB48(2) RB46(2) MSI1(2) 4..34
PRODOM PD004554: RB48(2) RB46(2) MSI1(2) 36..117
PRODOM PD000061: PEX7(6) WD66(5) CORO(5) 119..207
PRODOM PD005157: RB48(4) RB46(4) MSI1(4) 209..264
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 272..302
PRODOM PD005157: RB48(4) RB46(4) MSI1(4) 309..346
PRODOM PD004229: MSI1(3) RB48(2) RB46(2) 351..408
PROSITE G_BETA_REPEATS: Beta-transducin family T 194..208
__________________
Minus Strand HSPs:
Score = 163 (57.4 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 29/92 (31%), Positives = 47/92 (51%), Frame = -2
Query: 288 VGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISSPP 109
+ + +H F+ HK V V W+P ++ S L +WD ++ ++ + + PP
Sbjct: 306 LSTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE-QTVEDAEDGPP 364
Query: 108 GLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
L F H GH K+ DF WN + W I SV++D
Sbjct: 365 ELLFIHGGHTSKISDFSWNPCEDWVISSVAED 396
Score = 74 (26.0 bits), Expect = 0.84, P = 0.57
Identities = 25/94 (26%), Positives = 38/94 (40%), Frame = -2
Query: 294 NGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISS 115
+G +P K GH + + WS K S ++D + +WD K KS+ +
Sbjct: 165 DGACNPDLKLRGHSSEGYGLSWSKFKQGHLLSGSDDAQICLWDINATPKN-----KSLDA 219
Query: 114 PPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
+F H G V D W+ + SV DD
Sbjct: 220 QQ-IFKAHEG---VVEDVAWHLRHEYLFGSVGDD 249
>gi|3123170|sp|P90917|RBA1_CAEEL TRP-ASP REPEATS CONTAINING PROTEIN RBA-1
>gi|7505397|pir||T23385 hypothetical protein K07A1.11 -
Caenorhabditis elegans >gi|3878336|emb|CAB03172.1| (Z81097)
Similarity to Human retinoblastoma-binding protein RBAP46
(TR:Q16576)~cDNA EST EMBL:D73323 comes from this gene~cDNA EST
EMBL:D76357 comes from this gene~cDNA EST yk488h5.3 comes from this
gene~cDNA EST yk488h5.5 comes from this gene~cDNA EST >
Length = 412
Frame -2 hits (HSPs): ______ ___________
Annotated Domains: _________________________________________ ______
__________________________________________________
Database sequence: | | | | 412
0 150 300
__________________
Annotated Domains:
PFAM WD40: WD domain, G-beta repeat 161..200
PFAM WD40: WD domain, G-beta repeat 211..250
PFAM WD40: WD domain, G-beta repeat 254..293
PFAM WD40: WD domain, G-beta repeat 298..337
PRINTS GPROTEINBRPT1: G-protein beta repeat mot 187..201
PRINTS GPROTEINBRPT2: G-protein beta repeat mot 280..294
PRINTS GPROTEINBRPT3: G-protein beta repeat mot 324..338
PRODOM PD082225: RBA1_CAEEL 1..27
PRODOM PD004554: RB48(2) RB46(2) MSI1(2) 29..114
PRODOM PD000061: PEX7(6) WD66(5) CORO(5) 116..200
PRODOM PD005157: RB48(4) RB46(4) MSI1(4) 202..255
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 259..292
PRODOM PD005157: RB48(4) RB46(4) MSI1(4) 301..337
PRODOM PD004229: MSI1(3) RB48(2) RB46(2) 356..400
PROSITE G_BETA_REPEATS: Beta-transducin family T 280..294
PROSITE G_BETA_REPEATS: Beta-transducin family T 324..338
__________________
Minus Strand HSPs:
Score = 158 (55.6 bits), Expect = 6.5e-10, P = 6.5e-10
Identities = 34/88 (38%), Positives = 45/88 (51%), Frame = -2
Query: 276 IHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISS-PPGLF 100
++ + H + V +SP +V SS D + +WD K+ S S S PP +
Sbjct: 301 MYTLKHHNDEIFQVSFSPHYETVLASSGSDDRVIVWDISKIQDPSSSSAASSDSVPPEVI 360
Query: 99 FQHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
F HAGH KV DF WN PWTI S SD+
Sbjct: 361 FIHAGHTGKVADFSWNPNRPWTICS-SDE 388
Score = 70 (24.6 bits), Expect = 6.6, P = 1.0
Identities = 15/38 (39%), Positives = 21/38 (55%), Frame = -2
Query: 279 PIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 166
P KF+GH + V + + VFGS +D LN+WD
Sbjct: 213 PQSKFKGHSSNAEDVSFHALHNFVFGSVGDDRKLNLWD 250
>gi|3122386|sp|O22466|MSI1_LYCES WD-40 REPEAT PROTEIN MSI1
>gi|7444288|pir||T04324 G1/S transition control protein-binding
protein MSI1 - tomato >gi|2394227|gb|AAB70241.1| (AF016845) WD-40
repeat protein [Lycopersicon esculentum]
Length = 424
Frame -2 hits (HSPs): ____________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | | 424
0 150 300
__________________
Annotated Domains:
BLOCKS BL00678: Trp-Asp (WD) repeat proteins pr 196..206
PFAM WD40: WD domain, G-beta repeat 168..207
PFAM WD40: WD domain, G-beta repeat 217..256
PFAM WD40: WD domain, G-beta repeat 263..302
PFAM WD40: WD domain, G-beta repeat 307..346
PFAM WD40: WD domain, G-beta repeat 364..403
PRINTS GPROTEINBRPT1: G-protein beta repeat mot 194..208
PRINTS GPROTEINBRPT2: G-protein beta repeat mot 289..303
PRINTS GPROTEINBRPT3: G-protein beta repeat mot 333..347
PRODOM PD009383: RB48(2) RB46(2) MSI1(2) 4..34
PRODOM PD004554: RB48(2) RB46(2) MSI1(2) 36..117
PRODOM PD000061: PEX7(6) WD66(5) CORO(5) 119..207
PRODOM PD005157: RB48(4) RB46(4) MSI1(4) 209..264
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 272..302
PRODOM PD005157: RB48(4) RB46(4) MSI1(4) 309..346
PRODOM PD004229: MSI1(3) RB48(2) RB46(2) 350..408
PROSITE G_BETA_REPEATS: Beta-transducin family T 194..208
__________________
Minus Strand HSPs:
Score = 158 (55.6 bits), Expect = 6.9e-10, P = 6.9e-10
Identities = 27/92 (29%), Positives = 46/92 (50%), Frame = -2
Query: 288 VGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISSPP 109
+ + +H + HK V V W+P ++ S L +WD ++ ++ + + PP
Sbjct: 306 ISTALHTLDCHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEE-QTPEDAEDGPP 364
Query: 108 GLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
L F H GH K+ DF WN + W + SV++D
Sbjct: 365 ELLFIHGGHTSKISDFSWNPCEDWVVASVAED 396
>gi|7630165|emb|CAB88237.1| (AL353012) WD repeat protein; possible nuclear pore
complex associated [Schizosaccharomyces pombe]
Length = 480
Frame -2 hits (HSPs): _______ ___________
__________________________________________________
Database sequence: | | | | | 480
0 150 300 450
Minus Strand HSPs:
Score = 141 (49.6 bits), Expect = 6.0e-08, P = 6.0e-08
Identities = 27/96 (28%), Positives = 51/96 (53%), Frame = -2
Query: 297 TNGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSIS 118
++ V +P+ F+ H+A + ++W P++ SV G D +++WD + E+ ++
Sbjct: 373 SSSVATPVASFKWHRAPIYSIEWHPNEDSVIGVVGADNQISLWDLSVELDEEEQDSRAAE 432
Query: 117 S----PPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVS 19
PP L F H G ++ + + HW+ P TIVS +
Sbjct: 433 GLQDVPPQLMFIHMGQQE-IKEMHWHRQIPGTIVSTA 468
Score = 99 (34.8 bits), Expect = 0.0020, P = 0.0020
Identities = 22/55 (40%), Positives = 32/55 (58%), Frame = -2
Query: 267 FEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISSPPGL 103
F H AAV +QWSP + +VF S + DG IWD V K + S ++++ PG+
Sbjct: 287 FLSHTAAVEDLQWSPSEKNVFSSCSCDGTFRIWD---VRNKQKTSALTVNAHPGV 338
>gi|3219949|sp|O14021|YDPI_SCHPO HYPOTHETICAL 48.5 KD TRP-ASP REPEATS
CONTAINING PROTEIN C29A4.18 IN CHROMOSOME I >gi|7492467|pir||T38471
probable chromatin assembly factor - fission yeast
(Schizosaccharomyces pombe) >gi|2239227|emb|CAB10144.1| (Z97210)
putative chromatin assembly factor [Schizosaccharomyces pombe]
Length = 431
Frame -2 hits (HSPs): ___________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | 431
0 150 300
__________________
Annotated Domains:
Entrez Repetitive region: WD1. 127..159
Entrez Repetitive region: WD2. 182..213
Entrez Repetitive region: WD3. 232..263
Entrez Repetitive region: WD4. 279..310
Entrez Repetitive region: WD5. 323..354
Entrez Repetitive region: WD6. 380..411
PFAM WD40: WD domain, G-beta repeat 174..213
PFAM WD40: WD domain, G-beta repeat 224..263
PFAM WD40: WD domain, G-beta repeat 271..310
PFAM WD40: WD domain, G-beta repeat 315..354
PFAM WD40: WD domain, G-beta repeat 372..411
PRINTS GPROTEINBRPT1: G-protein beta repeat mot 200..214
PRINTS GPROTEINBRPT2: G-protein beta repeat mot 297..311
PRINTS GPROTEINBRPT3: G-protein beta repeat mot 341..355
PRODOM PD101213: YDPI_SCHPO 1..122
PRODOM PD000061: PEX7(6) WD66(5) CORO(5) 124..213
PRODOM PD005157: RB48(4) RB46(4) MSI1(4) 232..272
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 280..310
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 320..354
PRODOM PD004229: MSI1(3) RB48(2) RB46(2) 358..416
PROSITE G_BETA_REPEATS: Beta-transducin family T 297..311
PROSITE G_BETA_REPEATS: Beta-transducin family T 341..355
__________________
Minus Strand HSPs:
Score = 140 (49.3 bits), Expect = 6.4e-08, P = 6.4e-08
Identities = 24/88 (27%), Positives = 45/88 (51%), Frame = -2
Query: 276 IHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISSPPGLFF 97
+H EGH+ V + +SP + + S++ D +WD ++G+ + + ++ PP L F
Sbjct: 318 LHTLEGHEDIVTKISFSPHEEPILASTSADRRTLVWDLSRIGED-QPAEEAQDGPPELLF 376
Query: 96 QHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
H GH +D W WT+ + ++D
Sbjct: 377 MHGGHTSCTIDMDWCPNYNWTMATAAED 404
>gi|6320779 ref|NP_010858.1| subunit of a cytoplasmic histone
acetyltransferase; Hat2p >gi|731418|sp|P39984|HAT2_YEAST HISTONE
ACETYLTRANSFERASE TYPE B SUBUNIT 2 >gi|1077611|pir||S50533
hypothetical protein YEL056w - yeast (Saccharomyces cerevisiae)
>gi|603262|gb|AAB65031.1| (U18795) Hat2p: subunit of a cytoplasmic
histone acetyltransferase [Saccharomyces cerevisiae]
Length = 401
Frame -2 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | 401
0 150 300
Minus Strand HSPs:
Score = 139 (48.9 bits), Expect = 7.2e-08, P = 7.2e-08
Identities = 29/89 (32%), Positives = 44/89 (49%), Frame = -2
Query: 279 PIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISSPPGLF 100
P+H GH+ AV +++S V SS D L +WD +++G + + + P L
Sbjct: 287 PLHHMSGHEDAVNNLEFSTHVDGVVVSSGSDNRLMMWDLKQIGAE-QTPDDAEDGVPELI 345
Query: 99 FQHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
HAGHR V DF N PW + S ++
Sbjct: 346 MVHAGHRSSVNDFDLNPQIPWLVASAEEE 374
>gi|7332093|gb|AAF60780.1| (AC024818) contains similarity to Pfam family
PF00400 (WD domain, G-beta repeat), score=81.8, E=1.4e-20, N=3
[Caenorhabditis elegans]
Length = 469
Frame -2 hits (HSPs): _____ __________
__________________________________________________
Database sequence: | | | | | 469
0 150 300 450
Minus Strand HSPs:
Score = 123 (43.3 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 26/91 (28%), Positives = 44/91 (48%), Frame = -2
Query: 285 GSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISSPPG 106
G P+ F+ H + + V W P +++ F +S ED IWD + + + PP
Sbjct: 373 GQPVALFKYHNSPITSVDWHPHETTTFMASGEDDQTTIWD---IATEADGQTNIEGVPPQ 429
Query: 105 LFFQHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
L F H G +++V + HW+ P ++ S D
Sbjct: 430 LMFVHMG-QNEVKEVHWHQQIPGLAINTSID 459
Score = 76 (26.8 bits), Expect = 0.59, P = 0.44
Identities = 13/38 (34%), Positives = 21/38 (55%), Frame = -2
Query: 261 GHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK 148
GHK +V + WSP ++ + S + DG + +WD K
Sbjct: 289 GHKKSVEDLAWSPTETGLLASCSADGSIKLWDTRSAPK 326
>gi|6319672 ref|NP_009754.1| p50 subunit of the yeast Chromatin Assembly
Factor-I (CAF-I) negative regulator of ras-mediated cAMP induction;
homologous to beta subunit of GTP-binding proteins; Msi1p
>gi|127346|sp|P13712|MSI1_YEAST CHROMATIN ASSEMBLY FACTOR 1 P50
SUBUNIT (CAF-1 P50 SUBUNIT) (MSI1 PROTEIN) (IRA1 MULTICOPY
SUPPRESSOR) >gi|73266|pir||BVBYMS MSI1 protein - yeast
(Saccharomyces cerevisiae) >gi|172006|gb|AAA34804.1| (M27300) MSI1
protein [Saccharomyces cerevisiae] >gi|311671|emb|CAA79682.1|
(Z21487) aa sequence presents similarity with the beta-subunit of
transducin;negative regulator of the RAS- mediated induction of
cAMP when overexpressed;multicopy suppressor of IRA1 gene
[Saccharomyces cerevisiae] >gi|536563|emb|CAA85157.1| (Z36064) ORF
YBR195c [Saccharomyces cerevisiae]
Length = 422
Frame -2 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | 422
0 150 300
Minus Strand HSPs:
Score = 122 (42.9 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 31/90 (34%), Positives = 46/90 (51%), Frame = -2
Query: 282 SPIHKFEGHKAAVLCVQWSPDKSSVFGSSA-EDGLLNIWDYEKVGKKIERSGKSISSPPG 106
SPI E H +V ++WSP+ +V ++ EDGL+ +WD +S
Sbjct: 332 SPIATME-HGTSVSTLEWSPNFDTVLATAGQEDGLVKLWD---------------TSCEE 375
Query: 105 LFFQHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
F H GH V D W+A+DPW + SV++D
Sbjct: 376 TIFTHGGHMLGVNDISWDAHDPWLMCSVAND 406
>gi|7302218|gb|AAF57313.1| (AE003785) CG12792 gene product [Drosophila
melanogaster]
Length = 422
Frame -2 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | 422
0 150 300
Minus Strand HSPs:
Score = 113 (39.8 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 26/92 (28%), Positives = 49/92 (53%), Frame = -2
Query: 279 PIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERS-----GKSISS 115
PI F+ H + V+WSP +++V S +D + +WD V K I+++ + + +
Sbjct: 319 PIATFKHHTDHITTVEWSPAEATVLASGGDDDQIALWDLA-VEKDIDQAVDPAQNEDVLN 377
Query: 114 --PPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVS 19
PP L F H G ++ + + HW+ P ++S +
Sbjct: 378 KLPPQLLFIHQGQKE-IKELHWHPQLPGVLLSTA 410
Score = 77 (27.1 bits), Expect = 0.40, P = 0.33
Identities = 14/32 (43%), Positives = 20/32 (62%), Frame = -2
Query: 261 GHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 166
GH +V +QWSP++ SV S + D + IWD
Sbjct: 233 GHSQSVEDLQWSPNERSVLASCSVDKTIRIWD 264
Score = 77 (27.1 bits), Expect = 0.40, P = 0.33
Identities = 21/84 (25%), Positives = 39/84 (46%), Frame = -2
Query: 264 EGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISSPPGLFFQHAG 85
+ H++ V + W+ ++ + S +DG L+IWD + K K I++ F+H
Sbjct: 279 DAHQSDVNVISWNRNEPFI-ASGGDDGYLHIWDLRQFQSK-----KPIAT-----FKH-- 325
Query: 84 HRDKVVDFHWNAYDPWTIVSVSDD 13
H D + W+ + + S DD
Sbjct: 326 HTDHITTVEWSPAEATVLASGGDD 349
>gi|4191784|gb|AAD10153.1| (AC005917) putative WD-40 repeat protein
[Arabidopsis thaliana]
Length = 469
Frame -2 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | | 469
0 150 300 450
Minus Strand HSPs:
Score = 109 (38.4 bits), Expect = 0.00016, P = 0.00016
Identities = 28/102 (27%), Positives = 47/102 (46%), Frame = -2
Query: 291 GVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDY-----EKVGKKIERSGK 127
G + + FE HK + ++WS ++S ++ D L IWD E+ + K
Sbjct: 348 GGDAVVAHFEYHKHPITSIEWSAHEASTLAVTSGDNQLTIWDLSLEKDEEEEAEFNAQTK 407
Query: 126 SISS-----PPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
+ + PP L F H G +D + + HW+ P I+S + D
Sbjct: 408 ELVNTPQDLPPQLLFVHQGQKD-LKELHWHNQIPGMIISTAGD 449
Score = 105 (37.0 bits), Expect = 0.00044, P = 0.00044
Identities = 33/89 (37%), Positives = 42/89 (47%), Frame = -2
Query: 279 PIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISSPPGLF 100
PI F GH A+V +QWSP + +VF S + DG + +WD R GKS P L
Sbjct: 262 PI-PFAGHTASVEDLQWSPAEENVFASCSVDGSVAVWDI--------RLGKS----PALS 308
Query: 99 FQHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
F+ H V WN + S SDD
Sbjct: 309 FK--AHNADVNVISWNRLASCMLASGSDD 335
Score = 79 (27.8 bits), Expect = 0.28, P = 0.24
Identities = 21/90 (23%), Positives = 41/90 (45%), Frame = -2
Query: 282 SPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISSPPGL 103
SP F+ H A V + W+ S + S ++DG +I D + + G ++ +
Sbjct: 304 SPALSFKAHNADVNVISWNRLASCMLASGSDDGTFSIRDLRLI-----KGGDAVVA---- 354
Query: 102 FFQHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
F++ H+ + W+A++ T+ S D
Sbjct: 355 HFEY--HKHPITSIEWSAHEASTLAVTSGD 382
>gi|7509111|pir||T33805 hypothetical protein W07E6.2 - Caenorhabditis elegans
>gi|3886024|gb|AAC78176.1| (AF106576) contains similarity to WD
domains [Caenorhabditis elegans]
Length = 473
Frame -2 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | 473
0 150 300 450
Minus Strand HSPs:
Score = 108 (38.0 bits), Expect = 0.00021, P = 0.00021
Identities = 21/57 (36%), Positives = 38/57 (66%), Frame = -2
Query: 279 PIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDY---EKVGKKIERSGKSISS 115
P+H + HK+ VLC+ WSPD + + S+ ++G + IW+ E++GK ++R + I+S
Sbjct: 139 PLHTCKSHKSWVLCIAWSPDATKI-ASACKNGEICIWNAKTGEQIGKTLKRHKQWITS 195
>gi|7290895|gb|AAF46336.1| (AE003443) CG10763 gene product [Drosophila
melanogaster]
Length = 358
Frame -2 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | 358
0 150 300
Minus Strand HSPs:
Score = 105 (37.0 bits), Expect = 0.00029, P = 0.00029
Identities = 20/38 (52%), Positives = 25/38 (65%), Frame = -2
Query: 279 PIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 166
P +GH+A VLC WSPDK + SS++DG L IWD
Sbjct: 62 PRKVLKGHQAKVLCTDWSPDKRHII-SSSQDGRLIIWD 98
>gi|226483|prf||1515205A PRP4 gene [Saccharomyces cerevisiae]
Length = 213
Frame -2 hits (HSPs): __________ ___
__________________________________________________
Database sequence: | | | | | | 213
0 50 100 150 200
Minus Strand HSPs:
Score = 83 (29.2 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 15/43 (34%), Positives = 22/43 (51%), Frame = -2
Query: 285 GSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 157
GS + GH + V WSP+ V + DG++N+WD K
Sbjct: 87 GSKVMTLAGHSKPIYTVAWSPNGYQV-ATGGGDGIINVWDIRK 128
Score = 34 (12.0 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 5/8 (62%), Positives = 7/8 (87%), Frame = -2
Query: 90 AGHRDKVV 67
AGH DK++
Sbjct: 182 AGHTDKII 189
>gi|6320333 ref|NP_010413.1| Ydr128wp >gi|1077527|pir||S51855 hypothetical
protein YDR128w - yeast (Saccharomyces cerevisiae)
>gi|665660|emb|CAA88209.1| (Z48179) unknown [Saccharomyces
cerevisiae]
Length = 1148
Frame -2 hits (HSPs): ___ ___
__________________________________________________
Database sequence: | | | | | | | | | 1148
0 150 300 450 600 750 900 1050
Minus Strand HSPs:
Score = 75 (26.4 bits), Expect = 0.0020, Sum P(2) = 0.0020
Identities = 15/50 (30%), Positives = 28/50 (56%), Frame = -2
Query: 282 SPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERS 133
+P+ +GH ++V + ++ K S SS+ DG + WDY K + +R+
Sbjct: 192 TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRT 241
Score = 53 (18.7 bits), Expect = 0.0020, Sum P(2) = 0.0020
Identities = 13/36 (36%), Positives = 20/36 (55%), Frame = -2
Query: 87 GHRDKVVDFHWNA-------YDP--WTIVSVSDDCE 7
GH D+V+DF W + YD + +V+ S DC+
Sbjct: 299 GHSDRVIDFLWRSRHTCDGDYDDREFQLVTWSKDCD 334
>gi|6323779 ref|NP_013850.1| Rsa2p >gi|2494913|sp|Q04225|YM15_YEAST
HYPOTHETICAL 57.3 KD TRP-ASP REPEATS CONTAINING PROTEIN IN
POM152-REC114 INTERGENIC REGION >gi|1078579|pir||S53061
hypothetical protein YMR131c - yeast (Saccharomyces cerevisiae)
>gi|728670|emb|CAA88556.1| (Z48622) unknown [Saccharomyces
cerevisiae]
Length = 511
Frame -2 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | 511
0 150 300 450
Minus Strand HSPs:
Score = 99 (34.8 bits), Expect = 0.0022, P = 0.0022
Identities = 25/93 (26%), Positives = 46/93 (49%), Frame = -2
Query: 279 PIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDY--EKVGKKIERSG---KSISS 115
P+ +++ HK A+ + ++P S+ +ED + +WD E ++I++ K +
Sbjct: 409 PVAQYDFHKGAITSIAFNPLDESIVAVGSEDNTVTLWDLSVEADDEEIKQQAAETKELQE 468
Query: 114 -PPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDD 13
PP L F H + +V D W+ P +VS D
Sbjct: 469 IPPQLLFVH--WQKEVKDVKWHKQIPGCLVSTGTD 501
>gi|6325435 ref|NP_015504.1| associated with the U4/U6 snRNP; Prp4p
>gi|130805|sp|P20053|PR04_YEAST U4/U6 SMALL NUCLEAR
RIBONUCLEOPROTEIN PRP4 >gi|83590|pir||A32569 U4/U6 snRNP 52K
protein - yeast (Saccharomyces cerevisiae)
>gi|172281|gb|AAA79011.1| (M28518) pre-mRNA-processing protein
[Saccharomyces cerevisiae] >gi|786318|gb|AAB68111.1| (U25842) U4/U6
small nuclear ribonucleoprotein Prp4p (Swiss Prot. accession number
P20053) [Saccharomyces cerevisiae] >gi|1017454|gb|AAA79332.1|
(M26597) Prp4p [Saccharomyces cerevisiae]
Length = 465
Frame -2 hits (HSPs): __________ _____ __
__________________________________________________
Database sequence: | | | | | 465
0 150 300 450
Minus Strand HSPs:
Score = 83 (29.2 bits), Expect = 0.0033, Sum P(2) = 0.0033
Identities = 15/43 (34%), Positives = 22/43 (51%), Frame = -2
Query: 285 GSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK 157
GS + GH + V WSP+ V + DG++N+WD K
Sbjct: 339 GSKVMTLAGHSKPIYTVAWSPNGYQV-ATGGGDGIINVWDIRK 380
Score = 76 (26.8 bits), Expect = 0.58, P = 0.44
Identities = 25/84 (29%), Positives = 37/84 (44%), Frame = -2
Query: 270 KFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDY--EKVGKKI-------ERSGKSIS 118
K + H + + W PD ++ S AEDGL+ + Y E+ G ++ ER +
Sbjct: 213 KLDSHVGKIGAIDWHPDSNNQMISCAEDGLIKNFQYSNEEGGLRLLGDLVGHERRISDVK 272
Query: 117 -SPPGLFFQHAGHRDKVVDFHWNAYDPWT 34
P G F A H D W +D T
Sbjct: 273 YHPSGKFIGSASH-----DMTWRLWDAST 296
Score = 34 (12.0 bits), Expect = 0.0033, Sum P(2) = 0.0033
Identities = 5/8 (62%), Positives = 7/8 (87%), Frame = -2
Query: 90 AGHRDKVV 67
AGH DK++
Sbjct: 434 AGHTDKII 441
>gi|7493532|pir||T40553 Trp-Asp repeat protein - fission yeast
(Schizosaccharomyces pombe) >gi|5830509|emb|CAB54817.1| (AL110506)
WD repeat protein [Schizosaccharomyces pombe]
Length = 404
Frame -2 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | 404
0 150 300
Minus Strand HSPs:
Score = 96 (33.8 bits), Expect = 0.0033, P = 0.0033
Identities = 18/44 (40%), Positives = 20/44 (45%), Frame = -2
Query: 285 GSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKV 154
GS H GH VL V W P V S + DG +WD KV
Sbjct: 179 GSYTHSLSGHTGNVLAVDWCPKNEFVLASGSADGTCRLWDIRKV 222
>gi|4902500|emb|CAB43529.1| (Y14250) G protein, beta subunit [Geodia cydonium]
Length = 371
Frame -2 hits (HSPs): _____ ____
__________________________________________________
Database sequence: | | | | 371
0 150 300
Minus Strand HSPs:
Score = 74 (26.0 bits), Expect = 0.0051, Sum P(2) = 0.0051
Identities = 14/33 (42%), Positives = 21/33 (63%), Frame = -2
Query: 264 EGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 166
+GH+ +L WSPDK V ++ +DG L IW+
Sbjct: 73 KGHRGRILHFDWSPDKYHVV-TAGQDGQLFIWN 104
Score = 39 (13.7 bits), Expect = 0.0051, Sum P(2) = 0.0051
Identities = 7/27 (25%), Positives = 14/27 (51%), Frame = -2
Query: 87 GHRDKVVDFHWNAYDPWTIVSVSDDCE 7
GH ++ N DP+T+ + + C+
Sbjct: 211 GHTSDILGLALNPKDPFTVFATAS-CD 236
>gi|7160324|emb|CAB76208.1| (AJ271374) coronin [Trichomonas vaginalis]
Length = 435
Frame -2 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | 435
0 150 300
Minus Strand HSPs:
Score = 94 (33.1 bits), Expect = 0.0061, P = 0.0061
Identities = 19/61 (31%), Positives = 31/61 (50%), Frame = -2
Query: 288 VGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISSPP 109
VG+ F GH VL V ++P ++ S+AED L +W + G +E +S++
Sbjct: 64 VGTTKSLFRGHTGGVLDVDFNPFNDNIIASAAEDATLRVWQIKFNGTDVEEQNESLAVMK 123
Query: 108 G 106
G
Sbjct: 124 G 124
>gi|3023853|sp|Q10281|GBLP_SCHPO GUANINE NUCLEOTIDE-BINDING PROTEIN BETA
SUBUNIT-LIKE PROTEIN >gi|7490617|pir||T39022 guanine
nucleotide-binding protein beta subunit-like protein - fission
yeast (Schizosaccharomyces pombe) >gi|598437|gb|AAA56865.1|
(L37885) guanine nucleotide regulatory protein [Schizosaccharomyces
pombe] >gi|2440194|emb|CAB11079.1| (Z98531) guanine
nucleotide-binding protein beta subunit-like protein
[Schizosaccharomyces pombe]
Length = 314
Frame -1 hits (HSPs): ____
Frame -2 hits (HSPs): ________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | | 314
0 50 100 150 200 250 300
__________________
Annotated Domains:
BLOCKS BL00678: Trp-Asp (WD) repeat proteins pr 122..132
Entrez Repetitive region: WD1. 13..44
Entrez Repetitive region: WD2. 61..91
Entrez Repetitive region: WD3. 103..133
Entrez Repetitive region: WD4. 146..178
Entrez Repetitive region: WD5. 190..220
Entrez Repetitive region: WD6. 231..260
Entrez Repetitive region: WD7. 281..311
PFAM WD40: WD domain, G-beta repeat 5..44
PFAM WD40: WD domain, G-beta repeat 53..91
PFAM WD40: WD domain, G-beta repeat 95..133
PFAM WD40: WD domain, G-beta repeat 138..178
PFAM WD40: WD domain, G-beta repeat 182..220
PFAM WD40: WD domain, G-beta repeat 224..260
PFAM WD40: WD domain, G-beta repeat 274..311
PRINTS GPROTEINBRPT1: G-protein beta repeat mot 78..92
PRINTS GPROTEINBRPT2: G-protein beta repeat mot 120..134
PRINTS GPROTEINBRPT3: G-protein beta repeat mot 207..221
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 10..44
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 59..91
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 101..133
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 146..178
PRODOM PD000018: GBLP(92) GBB(40) GBB1(28) 190..220
PRODOM PD002398: GBLP(22) 226..265
PRODOM PD002496: GBLP(22) 267..312
PROSITE G_BETA_REPEATS: Beta-transducin family T 120..134
PROSITE G_BETA_REPEATS: Beta-transducin family T 207..221
PROSITE G_BETA_REPEATS: Beta-transducin family T 31..45
PROSITE G_BETA_REPEATS: Beta-transducin family T 78..92
__________________
Minus Strand HSPs:
Score = 71 (25.0 bits), Expect = 0.0067, Sum P(2) = 0.0067
Identities = 16/40 (40%), Positives = 21/40 (52%), Frame = -2
Query: 285 GSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 166
G H+F GH + VL V SPD V S + D + IW+
Sbjct: 95 GECTHQFVGHTSDVLSVSISPDNRQVV-SGSRDKTIKIWN 133
Score = 39 (13.7 bits), Expect = 0.0067, Sum P(2) = 0.0067
Identities = 7/17 (41%), Positives = 9/17 (52%), Frame = -1
Query: 157 GW*KDRAIWKINKFSSR 107
GW K +W + FS R
Sbjct: 169 GWDKAVKVWDLETFSLR 185
>gi|1402884|emb|CAA66815.1| (X98130) unknown [Arabidopsis thaliana]
>gi|1495265|emb|CAA66120.1| (X97488) beta-transducin like protein
[Arabidopsis thaliana]
Length = 346
Frame -2 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | 346
0 150 300
Minus Strand HSPs:
Score = 92 (32.4 bits), Expect = 0.0072, P = 0.0071
Identities = 25/88 (28%), Positives = 44/88 (50%), Frame = -2
Query: 279 PIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISSPPGLF 100
P+ + + H+A+V + W+P SS S+ +D IWD +G+ +E G P L
Sbjct: 259 PVVELQRHQASVNAIAWAPHSSSHICSAGDDSQALIWDISSMGQHVE-GGLD----PILA 313
Query: 99 FQHAGHRDKVVDFHWNAYDP-WTIVSVSD 16
+ AG +V W++ P W ++ S+
Sbjct: 314 YT-AGA--EVEQLQWSSSQPDWVAIAFSN 339
>gi|6319916 ref|NP_009997.1| regulatory protein; Ycr072cp
>gi|1351791|sp|P25382|YCW2_YEAST HYPOTHETICAL 57.0 KD TRP-ASP
REPEATS CONTAINING PROTEIN IN CPR4-SSK22 INTERGENIC REGION
>gi|83249|pir||S19487 hypothetical protein YCR072c - yeast
(Saccharomyces cerevisiae) >gi|1907211|emb|CAA42270.1| (X59720)
YCR072c, len:515 [Saccharomyces cerevisiae]
Length = 515
Frame -2 hits (HSPs): ____ ______
__________________________________________________
Database sequence: | | | | | 515
0 150 300 450
Minus Strand HSPs:
Score = 94 (33.1 bits), Expect = 0.0077, P = 0.0077
Identities = 16/39 (41%), Positives = 23/39 (58%), Frame = -2
Query: 282 SPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 166
+P+H +GH VLCV WSPD V + + D + +WD
Sbjct: 177 TPMHTLKGHYNWVLCVSWSPD-GEVIATGSMDNTIRLWD 214
Score = 71 (25.0 bits), Expect = 2.3, P = 0.90
Identities = 24/78 (30%), Positives = 35/78 (44%), Frame = -2
Query: 285 GSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISSPPG 106
G I F GH A+V V WS D + S ++D L +WD +K+ S+ P
Sbjct: 434 GKFISTFRGHIASVYQVAWSSD-CRLLVSCSKDTTLKVWDVRT--RKL-----SVDLP-- 483
Query: 105 LFFQHAGHRDKVVDFHWN 52
GH+D+V W+
Sbjct: 484 ------GHKDEVYTVDWS 495
>gi|6594228|emb|CAB63495.1| (AL133498) WD repeat protein similar to S.
cerevisiae microtubule-associated protein ytm1 [Schizosaccharomyces
pombe] >gi|7208601|gb|AAF40218.1|AF237708_1 (AF237708) ytm1p
[Schizosaccharomyces pombe]
Length = 440
Frame -2 hits (HSPs): _______ ____
__________________________________________________
Database sequence: | | | | 440
0 150 300
Minus Strand HSPs:
Score = 76 (26.8 bits), Expect = 0.0077, Sum P(2) = 0.0077
Identities = 21/50 (42%), Positives = 30/50 (60%), Frame = -2
Query: 267 FEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKK-IERSGKSIS 118
F GHK V V+ S + SSVF S++ D + IWD+E+ + +E SIS
Sbjct: 193 FVGHKDIVERVR-SLESSSVFISASADNTVGIWDFERSPETTLESFSSSIS 242
Score = 37 (13.0 bits), Expect = 0.0077, Sum P(2) = 0.0077
Identities = 8/26 (30%), Positives = 14/26 (53%), Frame = -2
Query: 90 AGHRDKVVDFHWNAYDPWTIVSVSDD 13
+GH++ V + +P+ SVS D
Sbjct: 352 SGHKNLVSGLSASPENPYMFASVSHD 377
>gi|6679283 ref|NP_032848.1| peroxisome biogenesis factor 7
>gi|3122602|sp|P97865|PEX7_MOUSE PEROXISOMAL TARGETING SIGNAL 2
RECEPTOR (PTS2 RECEPTOR) (PEROXIN-7) >gi|1890657|gb|AAB49755.1|
(U69171) peroxisomal PTS2 receptor [Mus musculus]
Length = 318
Frame -2 hits (HSPs): _____________ ______________
__________________________________________________
Database sequence: | | | | | | | | 318
0 50 100 150 200 250 300
Minus Strand HSPs:
Score = 91 (32.0 bits), Expect = 0.0080, P = 0.0080
Identities = 17/49 (34%), Positives = 26/49 (53%), Frame = -2
Query: 288 VGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKI 142
VG+ + F GH++ + WSP F S++ D L IWD + G +I
Sbjct: 139 VGNSLCTFRGHESVIYSTIWSPHIPGCFASASGDQTLRIWDVKTTGVRI 187
Score = 89 (31.3 bits), Expect = 0.013, P = 0.013
Identities = 24/93 (25%), Positives = 42/93 (45%), Frame = -2
Query: 288 VGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISSPP 109
VG+ + F GH++ + WSP F S++ D L IWD ++ +G I P
Sbjct: 139 VGNSLCTFRGHESVIYSTIWSPHIPGCFASASGDQTLRIWD-------VKTTGVRIVIP- 190
Query: 108 GLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDC 10
H+ +++ W Y+ +V+ + DC
Sbjct: 191 -------AHQTEILSCDWCKYNENLVVTGAVDC 216
Score = 71 (25.0 bits), Expect = 1.2, P = 0.70
Identities = 23/86 (26%), Positives = 36/86 (41%), Frame = -2
Query: 288 VGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISSPP 109
V P+ + GH A+ V++SP +SV S + D + W++ K +E
Sbjct: 226 VRQPVFELLGHTYAIRRVKFSPFHASVLASCSYDFTVRFWNFSKPDPLLETVEHHTEFTC 285
Query: 108 GLFFQHAGHRDKVVDFHWNA----YDP 40
GL +V D W+ YDP
Sbjct: 286 GLDLSLQSPT-QVADCSWDETIKIYDP 311
>gi|5031817 ref|NP_005877.1| katanin p80 (WD40-containing) subunit B 1
>gi|3005599|gb|AAC09328.1| (AF052432) katanin p80 subunit [Homo
sapiens]
Length = 655
Frame -2 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | | 655
0 150 300 450 600
Minus Strand HSPs:
Score = 95 (33.4 bits), Expect = 0.0082, P = 0.0082
Identities = 26/77 (33%), Positives = 40/77 (51%), Frame = -2
Query: 276 IHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISSPPGLFF 97
+ ++ GH AV C+++SPD S+A+D + +WD +GK +S PG
Sbjct: 140 VFRYRGHSQAVRCLRFSPD-GKWLASAADDHTVKLWDLT--------AGKMMSEFPG--- 187
Query: 96 QHAGHRDKVVDFHWNAY 46
H G + VV+FH N Y
Sbjct: 188 -HTGPVN-VVEFHPNEY 202
Score = 78 (27.5 bits), Expect = 0.54, P = 0.42
Identities = 25/93 (26%), Positives = 44/93 (47%), Frame = -2
Query: 285 GSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEK--VGKKIERSGKSISS- 115
G + +F GH V V++ P++ + S + DG + WD EK V +IE + S
Sbjct: 179 GKMMSEFPGHTGPVNVVEFHPNEY-LLASGSSDGTIRFWDLEKFQVVSRIEGEPGPVRSV 237
Query: 114 ---PPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVS 19
P G ++G +D + + W + +V V+
Sbjct: 238 LFNPDGCCL-YSGCQDSLRVYGWEPERCFDVVLVN 271
>gi|1749702|dbj|BAA13908.1| (D89247) similar to Human guanine
nucleotide-binding protein beta subunit-like protein, SWISS-PROT
Accession Number P25388 [Schizosaccharomyces pombe]
Length = 310
Frame -1 hits (HSPs): ____
Frame -2 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | | | | 310
0 50 100 150 200 250 300
Minus Strand HSPs:
Score = 71 (25.0 bits), Expect = 0.013, Sum P(2) = 0.013
Identities = 16/40 (40%), Positives = 21/40 (52%), Frame = -2
Query: 285 GSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWD 166
G H+F GH + VL V SPD V S + D + IW+
Sbjct: 91 GECTHQFVGHTSDVLSVSISPDNRQVV-SGSRDKTIKIWN 129
Score = 36 (12.7 bits), Expect = 0.013, Sum P(2) = 0.013
Identities = 7/17 (41%), Positives = 8/17 (47%), Frame = -1
Query: 157 GW*KDRAIWKINKFSSR 107
GW K W + FS R
Sbjct: 165 GWEKPVKAWDLETFSLR 181
>gi|4505731 ref|NP_000279.1| peroxisomal biogenesis factor 7
>gi|3122596|sp|O00628|PEX7_HUMAN PEROXISOMAL TARGETING SIGNAL 2
RECEPTOR (PTS2 RECEPTOR) (PEROXIN-7) >gi|1907315|gb|AAB50556.1|
(U76560) peroxisome targeting signal 2 receptor [Homo sapiens]
>gi|1947088|gb|AAC51238.1| (U88871) HsPEX7 [Homo sapiens]
>gi|7157950|gb|AAF37350.1|AF180814_1 (AF180814) peroxisomal PTS2
receptor [Homo sapiens]
Length = 323
Frame -2 hits (HSPs): ___________________________
__________________________________________________
Database sequence: | | | | | | | | 323
0 50 100 150 200 250 300
Minus Strand HSPs:
Score = 89 (31.3 bits), Expect = 0.014, P = 0.013
Identities = 17/49 (34%), Positives = 25/49 (51%), Frame = -2
Query: 288 VGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKI 142
VG + F GH++ + WSP F S++ D L IWD + G +I
Sbjct: 144 VGKSLCTFRGHESIIYSTIWSPHIPGCFASASGDQTLRIWDVKAAGVRI 192
Score = 85 (29.9 bits), Expect = 0.037, P = 0.036
Identities = 24/93 (25%), Positives = 41/93 (44%), Frame = -2
Query: 288 VGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISSPP 109
VG + F GH++ + WSP F S++ D L IWD ++ +G I P
Sbjct: 144 VGKSLCTFRGHESIIYSTIWSPHIPGCFASASGDQTLRIWD-------VKAAGVRIVIP- 195
Query: 108 GLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDC 10
H+ +++ W Y+ +V+ + DC
Sbjct: 196 -------AHQAEILSCDWCKYNENLLVTGAVDC 221
Score = 78 (27.5 bits), Expect = 0.21, P = 0.19
Identities = 24/86 (27%), Positives = 37/86 (43%), Frame = -2
Query: 288 VGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISSPP 109
V P+ + GH A+ V++SP +SV S + D + W++ K +E
Sbjct: 231 VRQPVFELLGHTYAIRRVKFSPFHASVLASCSYDFTVRFWNFSKPDSLLETVEHHTEFTC 290
Query: 108 GLFFQHAGHRDKVVDFHWNA----YDP 40
GL F +V D W+ YDP
Sbjct: 291 GLDFSLQSPT-QVADCSWDETIKIYDP 316
>gi|7290756|gb|AAF46202.1| (AE003438) CG4532 gene product [Drosophila
melanogaster]
Length = 1074
Frame -2 hits (HSPs): ____ __
__________________________________________________
Database sequence: | | | | | | | | | 1074
0 150 300 450 600 750 900 1050
Minus Strand HSPs:
Score = 76 (26.8 bits), Expect = 0.014, Sum P(2) = 0.014
Identities = 20/68 (29%), Positives = 35/68 (51%), Frame = -2
Query: 261 GHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISSPPGLFFQHAGH 82
GH V +++SP + ++++D L+ IW + G +E+S +S P +F H
Sbjct: 77 GHTDTVTDLKFSPFHDGLLATASQDCLVKIWHIPEKG--LEQS---LSDPEAIF-SHKQR 130
Query: 81 RDKVVDFH 58
R + V FH
Sbjct: 131 RVETVGFH 138
Score = 43 (15.1 bits), Expect = 0.014, Sum P(2) = 0.014
Identities = 6/20 (30%), Positives = 11/20 (55%), Frame = -2
Query: 72 VVDFHWNAYDPWTIVSVSDD 13
++DF W+ +D + DD
Sbjct: 694 IMDFQWDPFDAQRLAVACDD 713
>gi|6005932 ref|NP_009109.1| unr-interacting protein
>gi|4468218|emb|CAB38041.1| (AJ010025) unr-interacting protein
[Homo sapiens] >gi|6841516|gb|AAF29111.1|AF161496_1 (AF161496)
HSPC147 [Homo sapiens]
Length = 350
Frame -2 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | 350
0 150 300
Minus Strand HSPs:
Score = 89 (31.3 bits), Expect = 0.015, P = 0.015
Identities = 17/46 (36%), Positives = 27/46 (58%), Frame = -2
Query: 285 GSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK 148
G + ++GH + CV++SPD ++ S +EDG L +W VGK
Sbjct: 255 GEELESYKGHFGPIHCVRFSPD-GELYASGSEDGTLRLWQ-TVVGK 298
>gi|4519417|dbj|BAA75544.1| (AB024327) WD-40 repeat protein [Homo sapiens]
Length = 350
Frame -2 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | 350
0 150 300
Minus Strand HSPs:
Score = 89 (31.3 bits), Expect = 0.015, P = 0.015
Identities = 17/46 (36%), Positives = 27/46 (58%), Frame = -2
Query: 285 GSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK 148
G + ++GH + CV++SPD ++ S +EDG L +W VGK
Sbjct: 255 GEELESYKGHFGPIHCVRFSPD-GELYASGSEDGTLRLWQ-TVVGK 298
>gi|6807653|emb|CAB66626.1| (AL136691) hypothetical protein [Homo sapiens]
Length = 350
Frame -2 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | 350
0 150 300
Minus Strand HSPs:
Score = 89 (31.3 bits), Expect = 0.015, P = 0.015
Identities = 17/46 (36%), Positives = 27/46 (58%), Frame = -2
Query: 285 GSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGK 148
G + ++GH + CV++SPD ++ S +EDG L +W VGK
Sbjct: 255 GEELESYKGHFGPIHCVRFSPD-GELYASGSEDGTLRLWQ-TVVGK 298
WARNING: HSPs involving 254 database sequences were not reported due to the
limiting value of parameter B = 50.
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.99
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.333 0.140 0.463
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.342 0.149 0.511
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.354 0.155 0.568
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.390 0.171 0.891
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.316 0.134 0.436 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.351 0.157 0.484
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 98 97 10. 66 3 12 22 0.10 32
28 0.097 34
+2 0 99 98 10. 66 3 12 22 0.10 32
28 0.099 34
+1 0 99 98 10. 66 3 12 22 0.10 32
28 0.099 34
-1 0 99 98 10. 66 3 12 22 0.10 32
28 0.099 34
-2 0 99 98 10. 66 3 13 22 0.11 32
28 0.099 34
-3 0 98 98 10. 66 3 12 22 0.10 32
28 0.099 34
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 8:50 PM CDT May 27, 2000
Format: BLAST
# of letters in database: 158,518,215
# of sequences in database: 505,245
# of database sequences satisfying E: 304
No. of states in DFA: 587 (58 KB)
Total size of DFA: 151 KB (192 KB)
Time to generate neighborhood: 0.01u 0.01s 0.02t Elapsed: 00:00:01
No. of threads or processors used: 4
Search cpu time: 132.03u 1.13s 133.16t Elapsed: 00:00:39
Total cpu time: 132.15u 1.18s 133.33t Elapsed: 00:00:40
Start: Thu Feb 15 01:16:37 2001 End: Thu Feb 15 01:17:17 2001
WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000