RIKEN full-length enriched, mammary gland RCB-0526 Jyg-MC(A) cDNA

Library Description

Source: Yoshihide Hayashizaki, The Institute of Physical and Chemical Research (RIKEN)

Gene Content Analysis

14,998 ESTs from this library were grouped into 4,743 UniGene entries (putative genes) [UniGene build #177, 29-Nov-2008]. EST counts for each entry may be used to calculate an approximate expression level in transcripts per million (TPM).

ESTs	TPM		UniGene Entry
6	400		Mm.86322	Transforming, acidic coiled-coil containing protein 2, mRNA (cDNA clone IMAGE:3589967).
6	400		Mm.85410	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1, mRNA (cDNA clone IMAGE:4013032).
6	400		Mm.79983	Procollagen lysine, 2-oxoglutarate 5-dioxygenase 2, mRNA (cDNA clone MGC:29312 IMAGE:5007509).
6	400		Mm.66222	Coxsackievirus and adenovirus receptor, mRNA (cDNA clone MGC:25298 IMAGE:4216727).
6	400		Mm.6221	Calpain 1, mRNA (cDNA clone MGC:13886 IMAGE:4218148).
6	400		Mm.59812	ERGIC and golgi 2 (Ergic2), transcript variant 1, mRNA.
6	400		Mm.5831	ATP-binding cassette, sub-family E (OABP), member 1, mRNA (cDNA clone MGC:5781 IMAGE:3489529).
6	400		Mm.55289	Phospholipid scramblase 4 (Plscr4), mRNA.
6	400		Mm.549	Strain SJL/J interferon gamma receptor (Ifngr).
6	400		Mm.5048	Minichromosome maintenance deficient 5, cell division cycle 46 (S. cerevisiae) (Mcm5), mRNA.
6	400		Mm.4930	Equilibrative nitrobenzylthioinosine-insensitive nucleoside transporter ENT2 (Ent2).
6	400		Mm.476820	Prickle like 1 (Drosophila), mRNA (cDNA clone IMAGE:4215628).
6	400		Mm.476781	EH-domain containing 2 (Ehd2), mRNA.
6	400		Mm.476433	Insulin receptor substrate 1 (Irs1), mRNA.
6	400		Mm.475674	Alpha thalassemia/mental retardation syndrome X-linked homolog (human) (Atrx), mRNA.
6	400		Mm.470199	Transcribed locus.
6	400		Mm.470046	Transcribed locus, strongly similar to NP_059091.2 regulatory factor X, 5 [Mus musculus].
6	400		Mm.469937	X-box binding protein 1, mRNA (cDNA clone MGC:36774 IMAGE:2648085).
6	400		Mm.4608	PVT-1 mRNA, open reading frame.
6	400		Mm.45423	Acyl-Coenzyme A dehydrogenase family, member 10, mRNA (cDNA clone IMAGE:4950406).
6	400		Mm.44151	Mediator complex subunit 17 (Med17), mRNA.
6	400		Mm.440548	Sorting nexin 16 (Snx16), transcript variant 1, mRNA.
6	400		Mm.440465	CDNA clone IMAGE:9093221.
6	400		Mm.440371	Aryl hydrocarbon receptor nuclear translocator-like, mRNA (cDNA clone MGC:13810 IMAGE:3980719).
6	400		Mm.436579	Queuine tRNA-ribosyltransferase 1 (Qtrt1), mRNA.
6	400		Mm.427589	Cell cycle associated protein 1 (Caprin1), transcript variant 1, mRNA.
6	400		Mm.4219	Mannosidase 2, alpha B1, mRNA (cDNA clone IMAGE:2645468).
6	400		Mm.41513	Kruppel-like factor 16, mRNA (cDNA clone IMAGE:5343321).
6	400		Mm.41389	Kruppel-like factor 15, mRNA (cDNA clone MGC:19125 IMAGE:4211067).
6	400		Mm.412922	Mitogen-activated protein kinase kinase 4 (Map2k4), mRNA.
6	400		Mm.3996	Conserved helix-loop-helix ubiquitous kinase, mRNA (cDNA clone MGC:25325 IMAGE:4511275).
6	400		Mm.397413	Phosphatidylinositol transfer protein, cytoplasmic 1 (Pitpnc1), mRNA.
6	400		Mm.385020	Limb region 1 like (Lmbr1l), mRNA.
6	400		Mm.38445	Tropomodulin 3 (Tmod3), mRNA.
6	400		Mm.37801	Shc binding protein (mPAL).
6	400		Mm.371656	Tax1 (human T-cell leukemia virus type I) binding protein 3 (Tax1bp3), mRNA.
6	400		Mm.35738	Catenin (cadherin associated protein), delta 1 (Ctnnd1), transcript variant 1, mRNA.
6	400		Mm.352945	Zinc finger protein 740 (Zfp740), mRNA.
6	400		Mm.347770	Tripartite motif-containing 47, mRNA (cDNA clone IMAGE:4976004).
6	400		Mm.347728	RIKEN cDNA 6720469N11 gene, mRNA (cDNA clone IMAGE:6808790).
6	400		Mm.334869	RIKEN cDNA 2310061F22 gene (2310061F22Rik), mRNA.
6	400		Mm.331051	Guanine monphosphate synthetase, mRNA (cDNA clone IMAGE:4950527).
6	400		Mm.330819	ATPase, class II, type 9A, mRNA (cDNA clone IMAGE:3586316).
6	400		Mm.3294	Protein phosphatase 5, catalytic subunit, mRNA (cDNA clone MGC:5847 IMAGE:3590322).
6	400		Mm.329078	Cullin 7, mRNA (cDNA clone IMAGE:4022086).
6	400		Mm.32802	Intraflagellar transport 140 homolog (Chlamydomonas) (Ift140), mRNA.
6	400		Mm.32254	Zinc finger protein 180 (Zfp180), mRNA.
6	400		Mm.321138	CAMP responsive element binding protein 5, mRNA (cDNA clone MGC:32277 IMAGE:5012117).
6	400		Mm.32084	RIKEN cDNA 3000004C01 gene (3000004C01Rik), mRNA.
6	400		Mm.316894	Syntaxin binding protein 3A (Stxbp3a), mRNA.
6	400		Mm.31051	Heterogeneous nuclear ribonucleoprotein R, mRNA (cDNA clone MGC:46961 IMAGE:3500728).
6	400		Mm.308180	Protein tyrosine phosphatase-like A domain containing 1, mRNA (cDNA clone MGC:25483 IMAGE:4488391).
6	400		Mm.30162	SPARC related modular calcium binding 2, mRNA (cDNA clone MGC:28521 IMAGE:4191849).
6	400		Mm.298	Solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3 (Slc25a3), nuclear gene encoding mitochondrial protein, mRNA.
6	400		Mm.29490	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2 (Ctdsp2), transcript variant b, mRNA.
6	400		Mm.29344	Serine incorporator 1, mRNA (cDNA clone MGC:28838 IMAGE:4506673).
6	400		Mm.29262	Preproapelin (preproapelin gene).
6	400		Mm.291593	Protein phosphatase 1, regulatory (inhibitor) subunit 2 (Ppp1r2), mRNA.
6	400		Mm.291274	Arginine glutamic acid dipeptide (RE) repeats (Rere), mRNA.
6	400		Mm.290764	Leucine rich repeat containing 61, mRNA (cDNA clone MGC:28139 IMAGE:3981816).
6	400		Mm.290407	Nucleosome assembly protein 1-like 1 (Nap1l1), mRNA.
6	400		Mm.29006	DNA segment, Chr 3, ERATO Doi 751, expressed (D3Ertd751e), transcript variant 1, mRNA.
6	400		Mm.28999	Aurora kinase A interacting protein 1, mRNA (cDNA clone MGC:18778 IMAGE:4166765).
6	400		Mm.28963	Transmembrane protein 126A, mRNA (cDNA clone MGC:35755 IMAGE:4946998).
6	400		Mm.289516	G protein beta subunit-like, mRNA (cDNA clone IMAGE:4989476).
6	400		Mm.288974	Actin related protein 2/3 complex, subunit 5 (Arpc5), mRNA.
6	400		Mm.288741	SREBP cleavage activating protein, mRNA (cDNA clone IMAGE:5251383).
6	400		Mm.288733	TBC1 domain family, member 20, mRNA (cDNA clone IMAGE:3489034).
6	400		Mm.287500	Dihydrouridine synthase 2-like (SMM1, S. cerevisiae) (Dus2l), mRNA.
6	400		Mm.287226	RIKEN cDNA D430028G21 gene, mRNA (cDNA clone MGC:38873 IMAGE:5361522).
6	400		Mm.28683	Transferrin receptor 1 (TFR1 gene).
6	400		Mm.284792	WW domain binding protein 2 (Wbp2), mRNA.
6	400		Mm.28478	Transmembrane protein 48, mRNA (cDNA clone MGC:29369 IMAGE:5042118).
6	400		Mm.28319	Pleckstrin and Sec7 domain containing 4, mRNA (cDNA clone MGC:95956 IMAGE:30361859).
6	400		Mm.28291	Ribosomal L1 domain containing 1, mRNA (cDNA clone MGC:27753 IMAGE:2651674).
6	400		Mm.27990	BCL2-like 13 (apoptosis facilitator) (Bcl2l13), nuclear gene encoding mitochondrial protein, mRNA.
6	400		Mm.279751	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, mRNA (cDNA clone MGC:36040 IMAGE:3154501).
6	400		Mm.27966	RNA binding motif protein 15 (Rbm15), mRNA.
6	400		Mm.278037	Transmembrane 7 superfamily member 3 (Tm7sf3), mRNA.
6	400		Mm.277585	Amyloid beta (A4) precursor protein, mRNA (cDNA clone IMAGE:3486773).
6	400		Mm.277366	Autophagy-related 4C (yeast), mRNA (cDNA clone MGC:67363 IMAGE:6827140).
6	400		Mm.276504	NudC domain containing 2, mRNA (cDNA clone MGC:12088 IMAGE:3708975).
6	400		Mm.276389	Heme oxygenase (decycling) 1, mRNA (cDNA clone MGC:18463 IMAGE:4235374).
6	400		Mm.276305	DEAH (Asp-Glu-Ala-His) box polypeptide 30 (Dhx30), mRNA.
6	400		Mm.27627	Protein serine kinase H1, mRNA (cDNA clone MGC:60799 IMAGE:30024345).
6	400		Mm.275608	Dystrophin, muscular dystrophy (Dmd), mRNA.
6	400		Mm.27560	Ubiquitin-like modifier activating enzyme 2 (Uba2), mRNA.
6	400		Mm.27451	EPS8-like 2 (Eps8l2), mRNA.
6	400		Mm.274360	Ring finger protein 13 (Rnf13), transcript variant 2, mRNA.
6	400		Mm.274160	Exonuclease domain containing 1 (Exod1), mRNA.
6	400		Mm.273905	Cytohesin 1 interacting protein (Cytip), mRNA.
6	400		Mm.272801	Dynactin 4, mRNA (cDNA clone MGC:29051 IMAGE:3667031).
6	400		Mm.272443	Sirtuin 2 (silent mating type information regulation 2, homolog) 2 (S. cerevisiae), mRNA (cDNA clone MGC:29224 IMAGE:5039278).
6	400		Mm.271657	RIKEN cDNA 2010005J08 gene (2010005J08Rik), transcript variant 2, mRNA.
6	400		Mm.270681	Heat shock 105kDa/110kDa protein 1, mRNA (cDNA clone MGC:6016 IMAGE:3257042).
6	400		Mm.270259	MKIAA4020 protein.
6	400		Mm.267178	Expressed sequence AA409316, mRNA (cDNA clone IMAGE:4976934).
6	400		Mm.265716	Fibroblast growth factor receptor 1, mRNA (cDNA clone MGC:25398 IMAGE:4037899).
6	400		Mm.265264	Fn54 and Fn54s.
6	400		Mm.2651	D4, zinc and double PHD fingers family 2, mRNA (cDNA clone MGC:14002 IMAGE:4208205).

Source: NCBI UniGene

EST Sequences

16,362 EST sequences from this library have been submitted to the public sequence database as of 29-Nov-2008.

Source: NCBI GenBank

Click the button to save sequences to a file (FASTA format)

Keywords

• mammary gland
• unknown developmental stage
• enriched
• cell line

Source: NCBI Clone Registry

References

Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, et al., Nature 420, 563-573 (2002).