Submitter records for this RefSNP Cluster

NCBI Assay ID	Handle|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss6787246	WI_SSAHASNP|NT_028310.8_192589		fwd/B	C/T	atgttataaaatcacagaagtgtaaaggtc	attcaaagtacaacacagaccaatggtttt	02/12/03	10/10/03	111	Genomic			unknown
ss11174404	WI_SSAHASNP|chr11.NT_028310.10_2574370		fwd/B	C/T	atgttataaaatcacagaagtgtaaaggtc	attcaaagtacaacacagaccaatggtttt	07/03/03	10/25/06	117	Genomic			unknown
ss23537856	PERLEGEN|afd4647766		fwd/B	C/T	atgttataaaatcacagaagtgtaaaggtc	attcaaagtacaacacagaccaatggtttt	08/10/04	09/13/04	123	Genomic			unknown
ss66166333	AFFY|SNP_A-2180738		fwd/B	C/T	cagaagtgtaaaggtc	attcaaagtacaacac	10/27/06	03/31/08	127	Genomic			unknown
ss67768353	ILLUMINA|HumanHap650Yv1.0_rs4910810		fwd/B	C/T	atgttataaaatcacagaagtgtaaaggtc	attcaaagtacaacacagaccaatggtttt	11/14/06	11/14/06	127	Genomic			unknown
ss71418639	ILLUMINA|HumanHap650Yv3.0_rs4910810		fwd/B	C/T	atgttataaaatcacagaagtgtaaaggtc	attcaaagtacaacacagaccaatggtttt	04/23/07	04/23/07	127	Genomic			unknown
ss75408375	ILLUMINA|ILMN_Human_1M_rs4910810		fwd/B	C/T	atgttataaaatcacagaagtgtaaaggtc	attcaaagtacaacacagaccaatggtttt	08/28/07	08/29/07	129	Genomic			unknown
ss76214836	AFFY|AFFY_6_1M_SNP_A-2180738		fwd/B	C/T	cagaagtgtaaaggtc	attcaaagtacaacac	08/28/07	08/30/07	130	Genomic			unknown
ss88436688	BCMHGSC_JDW|JWB-0365941		fwd/B	C/T	atgttataaaatcacagaagtgtaaaggtc	attcaaagtacaacacagaccaatggtttt	02/26/08	02/27/08	129	Genomic			unknown

Fasta sequence   (Legend)

 AATATTTTTT AGCCATGAAA CCCGACATAT AAAACAGACA TAAGCAGAAG CTGCTCTGGC
 TGAAGTGAAG AGGGAGTAGG TACAGTAGAA CCCCACCAGC TCTGCCCTAT GAAGCAGCTT
 AGGGCTCTAT GAACCAATGT GAAATATTGT TCTAGATTag tggttctcaa agtgtgaccc
 aaagacccct aaaagtcccc aacacttctt ccaggggttc aatgaaatca aaaccatttt
 cacaataaaa ctaagacact ttgccctttt tctttactgt tctgacctct gtgctgatgt
 gcaaaatcaa tggtgtgcaa aaatgctggg aactcagcat gaatcaaagc aacaacccca
 aatggtgctg aactaacact cactgaattc ttcactgtca cccatttaca atataaaaaa
 ttccactttc acttaaaagg gtccttaatg aagcagcaaa aattattagt tgtattattt
 ctcaacacta cagcacaatt ctttttaatt cagtattggg aaatactcaa aaacttctgc
 ttactgaaat acaaaggata tcaaggggca aaccacctgt aattactttt gaaagctaaa
 tgtagttgtt tttctcatgg aacaccattt taattttttt ttttttttga gacagagtct
 ggctctgttg cccaggctgg agtgaagtga cgcaatctcg gctgactgca agctctgcct
 cccaggttca cgacattctc ctgcgtcagc cttccgagta actgggatta caggcgcccg
 ccaccacgcc cagctaattt tttgtatttt tagtagagac gggttttcac cgtgttagcc
 aggatggtct cgatctcctg accttgtgat ccgcccccct cagcctccca aagtgctggg
 attacaggcg tgagccactg cgccccgccc accattttaa tttcaaagaa tgattgacaa
 actatggtta ttaagatttg gTACTggctg ggcatggtgg ctcacacctg taatcctagc
 agtttgggag gccgaggcag gtggatcact tgaagtcagc agttcaaaac cagcctggcc
 aacatggtga aacctcatct ctactaaaaa tacaaaaaat tagccaggca tggtggtgga
 cgcctgtaat cccagctact tgggaggcgg agacaggaga atcagtggaa cccagaaggc
 ggaggttgca gtgagttgag atcccaccat tgtactccag cctgggggaa agaccgagac
 ctcgtctcaa aaaaaaaaaa aaaaaaaaaa aaagaaaggc tgggcatggt ggctcatgcc
 tataatccca gcatttcggg agaccgaggc agacagatca cgaggtcagg agttgaagac
 cagcctgacc aacatgatga aaccctgtct ctgctaaaaa tacaaaaatt agccatgtgt
 ggtggcacct gcctgtaatc ccagctactc aggaggctga ggcaggagaa ttgcttgaac
 ccaggaggcg aggttacagt gagccgagat cacgacactg cactccagcc taggcgacag
 agtgagacta catctaaaaa aaaaaaaaaa aaaaTTTTGA TACAAAAATT ACAACTACAA
 AAACATGCAT TCggctgggc gcagcggctc atgcctgtaa tcccaggact ttgggaggcg
 gaggtgagcg gatcacgagg tcaggagatc gagaccttcc tggctaacac ggtgaaaccc
 catctctact aaaaatacaa aaaattagcc gggcatggtg gcacgcccct gtattcccag
 ctactcggga ggatgaggca ggagaatggc gtgaacccgg gaagtggagc ttgcaataag
 ccgagatcgt gccactgcac tccagcccag gtgacagagt gaaactccat ctcaaaaaaa
 aaaaaaaaaa aaaaaaaaaa aaaacatgta ttcaccacta tcaggtcata agcttctcaa
 ttcttaaaaa gacttatctg atgagatggg tggaaacaga aacaactgta taattaaatt
 tgtcaacatc tggaatatct gggccaggcc tatggggctc atgcctgtaa tgccagctct
 ttaggaggcc gagacgggaa gatcacttga tgtcaggagt tccagaccag ccatggtcaa
 catgttgaaa ccccgtctct acaaaaaata caaaaattag ccagatgtgg tggtacacac
 ctgtagtccc agctactcag gaggctgagg catgagaatc acctgaaccc ggaatgcaga
 ggttacagtg agccaagatt gtgccacaac actccagcct gggtgacaaa gcaagactct
 gtctcaaaaa caaagaaaca aacaaacaaa aaaacaacaa aaaaagaaga tctgcataac
 tcagtaaatc aataatttca aaatcaacat gcatcatgtt ataaaatcac agaagtgtaa
 aggtc
 Y
 attcaaagta caacacagac caatggtttt taatacaaca gaatacaaaa gttcaatgac
 acagtttcag attccatact gtaatgaacc tttaaaaagg tttgaggccg ggcacggtgg
 ctcacgtctg aaatcccagc actttgggag gccaaggcag gcggatcact tgaggccagg
 agttcaaacc caacatggcg aaaccccgtc tctactaaaa atacaaaaaa ttagcccagc
 gtggtgatgt gcacctgtag tcccagcaac tcaggaggct gaggcaggag aattgcttga
 acctgggagg cggaggttgg agtacgctga gatagcgcca ctgcactccg acttgggcga
 cagagcacga ctccgtctca aaaaaacaaa caaataaaaa ggtttgactg tagtgtcaaa
 gagcagttag aattatctga aaaggccatt aaaatactcc tctcttttcc aactatgtat
 ctgtatgagg ctagattttc ttcacatact tcaaacaaaa caacataATA TATGTCAGAA
 TGCAAAGACT GGTACATTTA GAGGTCttct ttttatgata tggagtcttg ctctgtcacc
 caggatgaag cacagtggtg caatctgcgc tcactgcaac ctctgcctcc tgggttcaag
 cgattctctg cctcagcctc ccagtagctg ggactacagg tgcgtgtcac tgtgcccaac
 taatttttct atttttagta gattcagggt ttcaccatat tagccaggat ggtctcaaac
 tcctaacctt gtgatccacc cgcttcagcc tcccaaagtg ctggattaca ggtgtgagcc
 accacacccg gccAGCTACC ACTATATTTT TAAGAATTTT TCTTTCCTTA CTAAAAAAAA
 CTGCAAGTAT TTCCCATTAC ACTGAATTAA GTACAAATTC CTCAATGTGG TAATTATggc
 tgggcatggt ggctcacgcc tgtaatccca gcactttggg aggccaaagc gggtggattg
 cttgaggtca cgagttccag atcagcctgg ccaacatggt gaaagcctgt ctctactaaa
 aatacaaaat tagctgggtg tggtggcacg cacctgtaat ccagctactc gggaggctga
 ggcaagagaa ttgcttgaac ccacgaggcg gaggttgcgg tgagccaaga tcacatcatt
 gcactccagc cggggcaaca agagcgaaac tctgtctcaa aaaataaata aataaataaa
 taCATGTGAA ATATTTTCAC TAAAGTAGTA GTCTCAATCA AGGGCAATTC TGACAATTT

GeneView

Group Label	Contig->mRNA	Gene Model (contig mRNA transcript) Color Legend
reference	NT_009237->NM_005387 sv function
reference	NT_009237->NM_016320 sv function
reference	NT_009237->NM_139131 sv function
reference	NT_009237->NM_139132 sv function
HuRef	NW_001838018->NM_005387 sv function
HuRef	NW_001838018->NM_016320 sv function
HuRef	NW_001838018->NM_139131 sv function
HuRef	NW_001838018->NM_139132 sv function
Celera	NW_924962->NM_005387 sv function
Celera	NW_924962->NM_016320 sv function
Celera	NW_924962->NM_139131 sv function
Celera	NW_924962->NM_139132 sv function

Integrated Maps:

NCBI Resource Links

Population Diversity

	Sample Ascertainment				Genotype Detail				Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	C/C	C/T	T/T	HWP	C	T
ss11174404	HapMap-CEU	European	120	IG		0.050	0.950	1.000	0.025	0.975
	HapMap-HCB	Asian	90	IG		0.022	0.978	1.000	0.011	0.989
	HapMap-JPT	Asian	88	IG			1.000			1.000
	HapMap-YRI	Sub-Saharan African	120	IG	0.050	0.283	0.667	0.527	0.192	0.808
ss23537856	AFD_EUR_PANEL	European	48	IG			1.000			1.000
	AFD_AFR_PANEL	African American	44	IG		0.227	0.773	0.584	0.114	0.886
	AFD_CHN_PANEL	Asian	48	IG			1.000			1.000
ss66166333	HapMap-CEU	European	118	GF		0.051	0.949		0.025	0.975
	HapMap-HCB	Asian	90	GF		0.022	0.978		0.011	0.989
	HapMap-JPT	Asian	90	GF			1.000			1.000
	HapMap-YRI	Sub-Saharan African	120	GF	0.050	0.267	0.683		0.183	0.817

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	UNKNOWN