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Treponema denticola Search Results

Record: 1 of 1 MiniMap

Gene ID:TDE1211DNA Molecule Name: 1 GenBank ID: 42526720Gene Name: gufA Definition: GufA protein, ATPase component and ClpX-like chaperoneCellular Location: Cytoplasm [Evidence]Gene Start: 1244005Gene Stop: 1245459Gene Length: 1497Molecular Weight*: 55749pI*:Net Charge*:EC: Functional Class: Cellular processes; Chaperones Gene Ontology:Pathway: pathway tableComment: A possible protease, a possible chaperone.View in HOMD Genome ViewerBlast Summary: PSI-Blast Search TDE1211 has significant similarity to the Treponema pallidum gene TP0508 (3e-21). TDE1211 has significant similarity to the Borrelia burgdorferi gene 15594640 (1e-126).Top Blast Hits: Updated monthly Click here to view the entire PsiBlast results. gi|42526720|ref|NP_971818.1| ATP-dependent protease ATP-bin... 859 0.0 gi|2105144|gb|AAB57895.1| GufA [Treponema denticola] 669 0.0 gi|116747516|ref|YP_844203.1| heat shock protein HslVU, ATP... 455 e-126 gi|77920006|ref|YP_357821.1| heat shock protein HslVU ATPas... 439 e-121 gi|119878767|ref|ZP_01645646.1| heat shock protein HslVU, A... 438 e-121 gi|15605757|ref|NP_213134.1| ATP-dependent protease ATP-bin... 435 e-120 gi|116626379|ref|YP_828535.1| heat shock protein HslVU, ATP... 434 e-120 gi|108761314|ref|YP_631222.1| heat shock protein HslVU, ATP... 434 e-120 gi|27804891|gb|AAO22925.1| HslU-like protein [Myxococcus xa... 434 e-120 gi|124521657|ref|ZP_01696531.1| heat shock protein HslVU, A... 432 e-119COGS Summary: COGS Search BeTs to clades of COG1220 COG name: ATP-dependent protease, ATPase subunit Functional Class:� O The phylogenetic pattern of COG1220 is -------qv---b-efghs-ujx-t- Number of proteins in this genome belonging to this COG isBlocks Summary: Blocks Search Significant hit ( 2.2e-05) to 1/5 blocks of the IPB002648 family, which is described as "Isopentenyl transferase". Interpro entry for IPR002648. IPB002648A 56-81 2.2e-05 Significant hit ( 9.8e-05) to 1/5 blocks of the IPB000623 family, which is described as "Shikimate kinase". Interpro entry for IPR000623. IPB000623A 57-86 9.7e-05ProDom Summary: Protein Domain Search Residues 114 to 386 match (9e-49) PD:PD237658 which is described as ATP-BINDING PROTEOME COMPLETE HSLU PROTEASE CHAPERONE HSL ATP-DEPENDENT SUBUNIT HEAT Residues 391 to 485 match (1e-24) PD:PD427574 which is described as ATP-BINDING PROTEOME COMPLETE HSLU PROTEASE CHAPERONE HSL ATP-DEPENDENT SUBUNIT HEAT Residues 54 to 107 match (2e-21) PD:PD000092 which is described as ATP-BINDING PROTEOME COMPLETE PROTEASE SUBUNIT ATP-DEPENDENT CELL DIVISION CLP ATPASE Residues 391 to 476 match (1e-15) PD:PD336058 which is described as ATP-BINDING PROTEASE SUBUNIT CLP ATP-DEPENDENT PROTEOME COMPLETE CLPX CHAPERONE ZINC-FINGER Residues 8 to 52 match (4e-09) PD:PD586303 which is described as ATP-BINDING PROTEOME COMPLETE HSLU PROTEASE CHAPERONE HSL ATP-DEPENDENT SUBUNIT HEATParalogs: Local Blast Search TDE1211 is paralogously related to TDE1673 (ATP-dependent protease Clp, ATPase subunit) (2e-22), TDE2124 (ATP-dependent Clp protease, subunit A) (4e-07), TDE0470 (cell division protein (possible ATP-dependent Zn protease)) (1e-05) and TDE2327 (ATP-dependent Clp protease, subunit B) (2e-04).Pfam Summary: Pfam Search Residues 56 to 420 (E-value = 3.9e-06) place TDE1211 in the AAA family which is described as ATPase family associated with various cellular activities (AAA) (PF00004)Top PDB Hits: PDB hits to TDE1211 from Psi-BLAST round 5 vs. nr database 43.9% similar to PDB:1G4A Crystal Structures Of The Hslvu Peptidase-Atpase Complex Reveal An Atp-Dependent (Chain E,F; 1e-122) 43.9% similar to PDB:1G4B Crystal Structures Of The Hslvu Peptidase-Atpase Complex Reveal An Atp-Dependent (Chain E,F,K,L; 1e-122) 44.0% similar to PDB:1E94 Hslv-Hslu From E.Coli (Chain E,F; 1e-121) 44.0% similar to PDB:1HT2 Nucleotide-Dependent Conformational Changes In A Protease- Associated Atpase Hsl (Chain E,F,G,H; 1e-121) 44.0% similar to PDB:1HT1 Nucleotide-Dependent Conformational Changes In A Protease- Associated Atpase Hsl (Chain E,F,G,I; 1e-121) 44.0% similar to PDB:1DO2 Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From Escherichia Coli (Chain A,B,C,D; 1e-121) 44.0% similar to PDB:1DO0 Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu) From Escherichia Coli (Chain A,B,C,D,E,F; 1e-121) 44.9% similar to PDB:1G3I Crystal Structure Of The Hsluv Protease-Chaperone Complex (Chain A,B,C,D,E,F,S,T,U,V,W,X; 1e-116) 44.9% similar to PDB:1G41 Crystal Structure Of Hslu Haemophilus Influenzae (Chain A; 1e-116) 44.9% similar to PDB:1KYI Hsluv (H. Influenzae)-Nlvs Vinyl Sulfone Inhibitor Complex (Chain A,B,C,D,E,F,S,T,U,V,W,X; 1e-116)Gene Protein Sequence: MNEELKDLTPKQTVAELDKYIIGQNKAKRAVAIALRNRMRRLKLPEEIRD EIAPKNILMIGPTGVGKTEIARRLAKLSGAPFLKVEATKYTEVGYVGRDV ESMIRDLMAVGYTMVKSEMQEKLKEQAEKNTEESLLDLLLPGSNKKKTAA TSAQPQDVSQASSGTTISLPSVSSTAQAEEHKAQNENDMSGTREKFRVML RENKLEDKMVEVTISPSMGTPTFEFFAGGSNMEDIESAMSNISSMLMGGA KSKRKNVSVKEAREIIMAEQLDRMVDHDKVTDEAKQRVEQMGIIFIDEID KVASRSDRGGGPDVSREGVQRDILPIVEGSKVSTKYGVVDTRHILFIAAG AFSVSKPSDLIPEFQGRFPLRVELEALHAEDFKRILLEPKNALTKQYAEL LETEGVKIEFLDEAIDRMSFLAADVNSKNENIGARRLHTIMEMLLEDISF NASEMGGETVKIDVAYVDERLKDIVQDQDLSRYILGene Nucleotide Sequence: Sequence Viewer ATGAACGAAGAATTAAAAGATTTGACGCCTAAACAAACTGTTGCAGAACT GGATAAATATATCATAGGACAAAACAAGGCGAAAAGAGCCGTTGCTATTG CTCTTCGTAACAGAATGCGCCGTCTCAAACTTCCCGAAGAAATCAGAGAC GAAATAGCTCCTAAAAATATTTTGATGATAGGGCCTACGGGTGTAGGTAA AACCGAAATTGCAAGACGGCTTGCAAAATTGTCGGGAGCTCCTTTTTTAA AGGTAGAAGCTACAAAGTATACTGAAGTAGGTTATGTAGGCCGCGATGTC GAATCTATGATCAGGGATTTGATGGCTGTCGGCTACACAATGGTTAAAAG CGAAATGCAGGAAAAACTAAAAGAGCAAGCAGAAAAAAATACCGAAGAAT CTTTATTGGATTTGCTTTTGCCCGGTTCAAATAAAAAGAAAACTGCCGCA ACTTCTGCTCAGCCGCAAGATGTTTCTCAAGCCTCTAGCGGAACAACGAT AAGCCTTCCAAGTGTGAGTTCTACGGCTCAGGCGGAAGAGCATAAGGCTC AAAATGAAAACGATATGAGCGGCACAAGGGAAAAGTTCCGCGTAATGCTC CGCGAAAATAAACTTGAAGATAAGATGGTTGAGGTTACTATTTCTCCTTC CATGGGAACTCCCACATTCGAATTTTTTGCAGGCGGTTCAAACATGGAAG ATATTGAATCTGCAATGTCGAATATTTCCAGTATGCTTATGGGCGGAGCA AAATCAAAACGCAAAAATGTAAGCGTAAAAGAAGCCCGCGAAATTATAAT GGCCGAACAGCTTGATCGTATGGTAGATCATGATAAGGTAACGGATGAGG CAAAGCAAAGGGTCGAGCAGATGGGAATTATATTTATTGACGAAATCGAT AAGGTCGCTTCCCGTTCGGATCGCGGCGGCGGGCCCGATGTTTCAAGAGA GGGTGTTCAGCGCGATATTCTTCCCATAGTTGAAGGCTCTAAGGTTTCCA CTAAATACGGCGTTGTCGATACCCGTCACATTCTTTTTATAGCAGCGGGA GCTTTTAGCGTATCAAAGCCGAGCGATTTAATCCCTGAATTTCAAGGACG CTTCCCCTTGCGGGTAGAGCTTGAAGCCTTGCATGCAGAAGATTTTAAAC GCATTCTCCTTGAACCTAAAAATGCTTTGACCAAACAGTATGCAGAGCTT TTGGAAACCGAAGGCGTAAAAATTGAATTTTTAGATGAAGCCATTGATAG AATGAGTTTTTTGGCTGCCGATGTAAACAGCAAAAACGAAAACATTGGGG CAAGAAGGCTCCATACGATTATGGAAATGCTTTTAGAAGATATTTCGTTT AATGCAAGCGAAATGGGAGGCGAAACGGTAAAAATCGATGTAGCTTATGT GGATGAAAGGTTAAAAGATATAGTACAGGATCAGGATTTATCCCGATATA TTCTA

Los Alamos National Laboratory • Est 1943