BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= FNP_0888
(355 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|148323438|gb|EDK88688.1| sulfite reductase (NADPH) alpha... 701 0.0
gi|126699850|ref|YP_001088747.1| anaerobic sulfite reductas... 417 e-115
gi|145954273|ref|ZP_01803280.1| hypothetical protein CdifQ_... 416 e-114
gi|118444862|ref|YP_878758.1| anaerobic sulfite reductase s... 367 e-100
gi|110801377|ref|YP_696131.1| sulfite reductase, iron-sulfu... 360 7e-98
gi|18310422|ref|NP_562356.1| anaerobic sulfite reductase su... 360 8e-98
gi|110803330|ref|YP_698746.1| sulfite reductase, iron-sulfu... 357 8e-97
gi|148378950|ref|YP_001253491.1| anaerobic sulfite reductas... 352 1e-95
gi|150015669|ref|YP_001307923.1| Sulfite reductase, Subunit... 350 1e-94
gi|153938582|ref|YP_001390313.1| anaerobic sulfite reductas... 347 6e-94
gi|15894791|ref|NP_348140.1| Anaerobic sulfite reductase (F... 347 7e-94
gi|153810354|ref|ZP_01963022.1| hypothetical protein RUMOBE... 339 2e-91
gi|28212068|ref|NP_783012.1| anaerobic sulfite reductase su... 325 3e-87
gi|83590018|ref|YP_430027.1| 4Fe-4S ferredoxin, iron-sulfur... 315 2e-84
gi|90412213|ref|ZP_01220219.1| anaerobic sulfite reductase ... 311 3e-83
gi|117620268|ref|YP_857085.1| anaerobic sulfite reductase s... 311 4e-83
gi|153833480|ref|ZP_01986147.1| sulfite reductase, subunit ... 303 8e-81
gi|114843398|ref|ZP_01453863.1| 4Fe-4S ferredoxin, iron-sul... 292 2e-77
gi|34764356|ref|ZP_00145179.1| Anaerobic sulfite reductase ... 291 4e-77
gi|56412574|ref|YP_149649.1| anaerobic sulfite reductase su... 291 5e-77
gi|16765868|ref|NP_461483.1| anaerobic sulfide reductase [S... 290 9e-77
gi|76795378|ref|ZP_00777751.1| 4Fe-4S ferredoxin, iron-sulf... 288 4e-76
gi|16761462|ref|NP_457079.1| anaerobic sulfite reductase su... 287 7e-76
gi|110798684|ref|YP_696225.1| anaerobic sulfite reductase, ... 286 2e-75
gi|18310520|ref|NP_562454.1| anaerobic sulfite reductase su... 286 2e-75
gi|62181112|ref|YP_217529.1| anaerobic sulfide reductase [S... 283 1e-74
gi|116247989|gb|ABJ90310.1| anaerobic sulfite reductase sub... 218 4e-55
gi|116247968|gb|ABJ90300.1| anaerobic sulfite reductase sub... 201 7e-50
gi|116247952|gb|ABJ90292.1| anaerobic sulfite reductase sub... 200 1e-49
gi|116247950|gb|ABJ90291.1| anaerobic sulfite reductase sub... 199 2e-49
gi|116247985|gb|ABJ90308.1| anaerobic sulfite reductase sub... 198 3e-49
gi|116247977|gb|ABJ90304.1| anaerobic sulfite reductase sub... 198 4e-49
gi|116247948|gb|ABJ90290.1| anaerobic sulfite reductase sub... 197 1e-48
gi|116247946|gb|ABJ90289.1| anaerobic sulfite reductase sub... 196 2e-48
gi|116247970|gb|ABJ90301.1| anaerobic sulfite reductase sub... 194 6e-48
gi|116247954|gb|ABJ90293.1| anaerobic sulfite reductase sub... 194 9e-48
gi|116247975|gb|ABJ90303.1| anaerobic sulfite reductase sub... 193 1e-47
gi|116247958|gb|ABJ90295.1| anaerobic sulfite reductase sub... 191 6e-47
gi|116247966|gb|ABJ90299.1| anaerobic sulfite reductase sub... 189 3e-46
gi|116247983|gb|ABJ90307.1| anaerobic sulfite reductase sub... 186 2e-45
gi|116247987|gb|ABJ90309.1| anaerobic sulfite reductase sub... 182 2e-44
gi|116247964|gb|ABJ90298.1| anaerobic sulfite reductase sub... 178 5e-43
gi|116247960|gb|ABJ90296.1| anaerobic sulfite reductase sub... 177 7e-43
gi|116247979|gb|ABJ90305.1| anaerobic sulfite reductase sub... 177 7e-43
gi|116247962|gb|ABJ90297.1| anaerobic sulfite reductase sub... 176 3e-42
gi|116247956|gb|ABJ90294.1| anaerobic sulfite reductase sub... 171 9e-41
gi|116247972|gb|ABJ90302.1| anaerobic sulfite reductase sub... 164 7e-39
gi|114565956|ref|YP_753110.1| 4Fe-4S ferredoxin, iron-sulfu... 150 1e-34
gi|116247981|gb|ABJ90306.1| anaerobic sulfite reductase sub... 149 3e-34
gi|83589666|ref|YP_429675.1| 4Fe-4S ferredoxin, iron-sulfur... 136 2e-30
gi|145620275|ref|ZP_01776310.1| 4Fe-4S ferredoxin, iron-sul... 131 6e-29
gi|118745760|ref|ZP_01593726.1| 4Fe-4S ferredoxin, iron-sul... 129 4e-28
gi|117924189|ref|YP_864806.1| 4Fe-4S ferredoxin, iron-sulfu... 127 2e-27
gi|78224620|ref|YP_386367.1| Heterodisulfide reductase, iro... 126 2e-27
gi|78043358|ref|YP_359780.1| putative anaerobic sulfite red... 125 4e-27
gi|148262229|ref|YP_001228935.1| 4Fe-4S ferredoxin, iron-su... 124 9e-27
gi|57642007|ref|YP_184485.1| cytosolic NiFe-hydrogenase, be... 120 1e-25
gi|67917633|ref|ZP_00511238.1| 4Fe-4S ferredoxin, iron-sulf... 119 3e-25
gi|145619066|ref|ZP_01775119.1| 4Fe-4S ferredoxin, iron-sul... 119 3e-25
gi|134298018|ref|YP_001111514.1| 4Fe-4S ferredoxin, iron-su... 119 3e-25
gi|116754222|ref|YP_843340.1| 4Fe-4S ferredoxin, iron-sulfu... 118 5e-25
gi|110601765|ref|ZP_01389935.1| 4Fe-4S ferredoxin, iron-sul... 118 6e-25
gi|78188999|ref|YP_379337.1| hydrogenase/sulfur reductase, ... 118 7e-25
gi|108800385|ref|YP_640582.1| 4Fe-4S ferredoxin, iron-sulfu... 117 1e-24
gi|110597811|ref|ZP_01386094.1| hydrogenase/sulfur reductas... 116 2e-24
gi|14591101|ref|NP_143176.1| cytochrome-c3 hydrogenase alph... 116 3e-24
gi|117928223|ref|YP_872774.1| 4Fe-4S ferredoxin, iron-sulfu... 116 3e-24
gi|116749403|ref|YP_846090.1| 4Fe-4S ferredoxin, iron-sulfu... 116 3e-24
gi|147677741|ref|YP_001211956.1| hypothetical protein PTH_1... 115 3e-24
gi|14521076|ref|NP_126551.1| hydrogenase (cytochrome-c3 hyd... 114 7e-24
gi|563905|emb|CAA53034.1| hydrogenase (alpha subunit) [Pyro... 114 8e-24
gi|18977263|ref|NP_578620.1| sulfhydrogenase beta subunit [... 114 1e-23
gi|67154778|ref|ZP_00416523.1| 4Fe-4S ferredoxin, iron-sulf... 114 1e-23
gi|149917174|ref|ZP_01905674.1| hypothetical protein PPSIR1... 113 2e-23
gi|68549006|ref|ZP_00588474.1| 4Fe-4S ferredoxin, iron-sulf... 113 2e-23
gi|2746737|gb|AAB94933.1| NiFe hydrogenase beta subunit [Th... 113 2e-23
gi|110601270|ref|ZP_01389464.1| 4Fe-4S ferredoxin, iron-sul... 112 3e-23
gi|39995198|ref|NP_951149.1| heterodisulfide reductase, iro... 112 3e-23
gi|149174243|ref|ZP_01852870.1| 4Fe-4S ferredoxin, iron-sul... 111 8e-23
gi|68551597|ref|ZP_00590992.1| hydrogenase/sulfur reductase... 111 8e-23
gi|119357070|ref|YP_911714.1| 4Fe-4S ferredoxin, iron-sulfu... 110 1e-22
gi|16081223|ref|NP_393525.1| anaerobic sulfite reduction pr... 110 1e-22
gi|78186974|ref|YP_375017.1| hydrogenase/sulfur reductase, ... 110 2e-22
gi|67939787|ref|ZP_00532275.1| hydrogenase/sulfur reductase... 109 2e-22
gi|68548768|ref|ZP_00588237.1| hydrogenase/sulfur reductase... 109 3e-22
gi|18977701|ref|NP_579058.1| H-II hydrogenase subunit beta ... 109 3e-22
gi|67918391|ref|ZP_00511990.1| hydrogenase/sulfur reductase... 108 7e-22
gi|110598345|ref|ZP_01386619.1| 4Fe-4S ferredoxin, iron-sul... 108 7e-22
gi|78189526|ref|YP_379864.1| hydrogenase/sulfur reductase, ... 107 1e-21
gi|120601878|ref|YP_966278.1| hydrogenase, putative [Desulf... 107 1e-21
gi|21674072|ref|NP_662137.1| hydrogenase/sulfur reductase, ... 107 1e-21
gi|118470838|ref|YP_888220.1| [NiFe] hydrogenase, beta subu... 107 1e-21
gi|94264772|ref|ZP_01288550.1| 4Fe-4S ferredoxin, iron-sulf... 107 1e-21
gi|88811672|ref|ZP_01126926.1| cytochrome c3 hydrogenase al... 106 2e-21
gi|13540834|ref|NP_110522.1| Ferredoxin subunit of sulfhydr... 106 3e-21
gi|156107639|gb|EDO09384.1| hypothetical protein BACOVA_052... 105 4e-21
gi|52548767|gb|AAU82616.1| ferredoxin [uncultured archaeon ... 105 6e-21
gi|144900808|emb|CAM77672.1| 4Fe-4S ferredoxin, iron-sulfur... 104 7e-21
gi|46580805|ref|YP_011613.1| hydrogenase, putative [Desulfo... 104 7e-21
gi|86743175|ref|YP_483575.1| 4Fe-4S ferredoxin, iron-sulfur... 104 8e-21
gi|74317278|ref|YP_315018.1| hypothetical protein Tbd_1260 ... 104 9e-21
gi|148263197|ref|YP_001229903.1| 4Fe-4S ferredoxin, iron-su... 103 1e-20
gi|14521154|ref|NP_126629.1| hydrogenase (cytochrome-c3 hyd... 103 2e-20
gi|21674703|ref|NP_662768.1| hydrogenase/sulfur reductase, ... 103 2e-20
gi|118581196|ref|YP_902446.1| putative anaerobic sulfite re... 103 2e-20
gi|145219648|ref|YP_001130357.1| 4Fe-4S ferredoxin, iron-su... 103 2e-20
gi|111017059|ref|YP_700031.1| probable ferredoxin [Rhodococ... 100 2e-19
gi|119357951|ref|YP_912595.1| hydrogenase/sulfur reductase,... 98 7e-19
gi|89091969|ref|ZP_01164924.1| hypothetical protein MED92_0... 98 1e-18
gi|52842678|ref|YP_096477.1| cytochrome c3 hydrogenase alph... 97 2e-18
gi|54298471|ref|YP_124840.1| hypothetical protein lpp2535 [... 96 2e-18
gi|148360077|ref|YP_001251284.1| cytochrome c3 hydrogenase ... 96 4e-18
gi|78356259|ref|YP_387708.1| hydrogenase, putative [Desulfo... 95 7e-18
gi|54295305|ref|YP_127720.1| hypothetical protein lpl2390 [... 95 7e-18
gi|85857968|ref|YP_460170.1| Ni/Fe hydrogenase beta subunit... 92 4e-17
gi|78358568|ref|YP_390017.1| hydrogenase, putative [Desulfo... 83 3e-14
>gi|148323438|gb|EDK88688.1| sulfite reductase (NADPH) alpha subunit [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
Length = 355
Score = 701 bits (1808), Expect = 0.0, Method: Composition-based stats.
Identities = 355/355 (100%), Positives = 355/355 (100%)
Query: 1 MKLRLSIEEFDRGLEELSKKYLILAPRTFEKRGTYSDTDVVRYAKVNNFSEMNWEDKSHF 60
MKLRLSIEEFDRGLEELSKKYLILAPRTFEKRGTYSDTDVVRYAKVNNFSEMNWEDKSHF
Sbjct: 1 MKLRLSIEEFDRGLEELSKKYLILAPRTFEKRGTYSDTDVVRYAKVNNFSEMNWEDKSHF 60
Query: 61 PAKEALLPVNEVLFYFTEDEYKVAAEDTRERLVFLRACDMNAVKRIDQIYLGNGASNDFF 120
PAKEALLPVNEVLFYFTEDEYKVAAEDTRERLVFLRACDMNAVKRIDQIYLGNGASNDFF
Sbjct: 61 PAKEALLPVNEVLFYFTEDEYKVAAEDTRERLVFLRACDMNAVKRIDQIYLGNGASNDFF 120
Query: 121 YTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKADNYDAAMNVRGNEIQLEIRDEDLNIFSG 180
YTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKADNYDAAMNVRGNEIQLEIRDEDLNIFSG
Sbjct: 121 YTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKADNYDAAMNVRGNEIQLEIRDEDLNIFSG 180
Query: 181 REIDFDIDYVTKNEFEVDLPEKVDFMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCFSMQ 240
REIDFDIDYVTKNEFEVDLPEKVDFMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCFSMQ
Sbjct: 181 REIDFDIDYVTKNEFEVDLPEKVDFMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCFSMQ 240
Query: 241 DIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGEN 300
DIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGEN
Sbjct: 241 DIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGEN 300
Query: 301 MCVGCGRCDDMCPQYISISEAYEKVAHAMREKDNEELISEVYEKVVKAMKEKREE 355
MCVGCGRCDDMCPQYISISEAYEKVAHAMREKDNEELISEVYEKVVKAMKEKREE
Sbjct: 301 MCVGCGRCDDMCPQYISISEAYEKVAHAMREKDNEELISEVYEKVVKAMKEKREE 355
>gi|126699850|ref|YP_001088747.1| anaerobic sulfite reductase subunit A [Clostridium difficile 630]
gi|115251287|emb|CAJ69118.1| anaerobic sulfite reductase subunit A [Clostridium difficile 630]
Length = 338
Score = 417 bits (1072), Expect = e-115, Method: Composition-based stats.
Identities = 193/325 (59%), Positives = 248/325 (76%)
Query: 1 MKLRLSIEEFDRGLEELSKKYLILAPRTFEKRGTYSDTDVVRYAKVNNFSEMNWEDKSHF 60
MKL+L +F+ GL L K Y I AP +GT+SDTDV+RY +VN F EM + K++F
Sbjct: 4 MKLKLDSSKFNEGLNYLKKDYKIFAPVLIPFKGTFSDTDVIRYKEVNAFEEMEFAKKANF 63
Query: 61 PAKEALLPVNEVLFYFTEDEYKVAAEDTRERLVFLRACDMNAVKRIDQIYLGNGASNDFF 120
KE +LP+N+VLFYFTE E+K + D ++ L+FLRACD+N +KR+D+IYL NG D+F
Sbjct: 64 SPKEVVLPINQVLFYFTEKEFKESDLDNKKILIFLRACDINGIKRLDEIYLNNGEEKDYF 123
Query: 121 YTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKADNYDAAMNVRGNEIQLEIRDEDLNIFSG 180
Y R K KF +VGC ++FRNCFCVSM +NK DNY +N+ G+ + L+I+D + +F+G
Sbjct: 124 YKNIRDKVKFALVGCKESFRNCFCVSMDSNKTDNYSIGLNIEGDTLYLDIKDSEFEVFNG 183
Query: 181 REIDFDIDYVTKNEFEVDLPEKVDFMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCFSMQ 240
+F++DYVT N VD+PE +D M + +WDEYDTRCI CGRCN+ CPTC+CF+MQ
Sbjct: 184 EATEFNVDYVTDNLISVDVPENIDSNEMIGNSIWDEYDTRCIGCGRCNFVCPTCSCFTMQ 243
Query: 241 DIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGEN 300
DI YKENEN+GERRRVWASCQVDGYT+IAGG+SFR K G+RMRFKT+HKIHD+KKRFG +
Sbjct: 244 DIFYKENENVGERRRVWASCQVDGYTDIAGGNSFRKKQGERMRFKTMHKIHDFKKRFGYH 303
Query: 301 MCVGCGRCDDMCPQYISISEAYEKV 325
MCVGCGRCDD CPQYIS S+ EK+
Sbjct: 304 MCVGCGRCDDACPQYISFSKCIEKI 328
>gi|145954273|ref|ZP_01803280.1| hypothetical protein CdifQ_04002583 [Clostridium difficile
QCD-32g58]
Length = 335
Score = 416 bits (1068), Expect = e-114, Method: Composition-based stats.
Identities = 192/325 (59%), Positives = 248/325 (76%)
Query: 1 MKLRLSIEEFDRGLEELSKKYLILAPRTFEKRGTYSDTDVVRYAKVNNFSEMNWEDKSHF 60
MKL+L +F+ GL L K Y I AP +GT+SDTDV+RY +VN F EM + K++F
Sbjct: 1 MKLKLDSSKFNEGLNYLKKDYKIFAPVLIPFKGTFSDTDVIRYKEVNAFEEMEFAKKANF 60
Query: 61 PAKEALLPVNEVLFYFTEDEYKVAAEDTRERLVFLRACDMNAVKRIDQIYLGNGASNDFF 120
KE +LP+N+VLFYFTE E+K + D ++ L+FLRACD+N +KR+D+IYL NG D+F
Sbjct: 61 SPKEVVLPINQVLFYFTEKEFKESDLDNKKILIFLRACDINGIKRLDEIYLNNGEEKDYF 120
Query: 121 YTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKADNYDAAMNVRGNEIQLEIRDEDLNIFSG 180
Y R K KF +VGC ++FRNCFCVSM +NK DNY +N+ G+ + L+I+D + +F+G
Sbjct: 121 YKNIRDKVKFALVGCKESFRNCFCVSMDSNKTDNYSIGLNIEGDTLYLDIKDSEFEVFNG 180
Query: 181 REIDFDIDYVTKNEFEVDLPEKVDFMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCFSMQ 240
+F++DYVT N VD+PE +D + + +WDEYDTRCI CGRCN+ CPTC+CF+MQ
Sbjct: 181 EATEFNVDYVTDNLISVDVPENIDSNEIIGNSIWDEYDTRCIGCGRCNFVCPTCSCFTMQ 240
Query: 241 DIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGEN 300
DI YKENEN+GERRRVWASCQVDGYT+IAGG+SFR K G+RMRFKT+HKIHD+KKRFG +
Sbjct: 241 DIFYKENENVGERRRVWASCQVDGYTDIAGGNSFRKKQGERMRFKTMHKIHDFKKRFGYH 300
Query: 301 MCVGCGRCDDMCPQYISISEAYEKV 325
MCVGCGRCDD CPQYIS S+ EK+
Sbjct: 301 MCVGCGRCDDACPQYISFSKCIEKI 325
>gi|118444862|ref|YP_878758.1| anaerobic sulfite reductase subunit A [Clostridium novyi NT]
gi|118135318|gb|ABK62362.1| anaerobic sulfite reductase subunit A [Clostridium novyi NT]
Length = 333
Score = 367 bits (942), Expect = e-100, Method: Composition-based stats.
Identities = 176/330 (53%), Positives = 244/330 (73%), Gaps = 3/330 (0%)
Query: 1 MKLRLSIEEFDRGLEELSKKYLILAPRTFEKRGTYSDTDVVRYAKVNNFSEMNWEDKSHF 60
M ++LS E+FD + +L + Y I AP + +G +SDTDV+RY++VN+ +E+ ++ KS+F
Sbjct: 1 MGIKLSREKFDGYINKLKQDYKIYAPVVMKGKGAFSDTDVIRYSEVNSINEIEFDKKSNF 60
Query: 61 PAKEALLPVNEVLFYFTEDEYKVAAEDTRERLVFLRACDMNAVKRIDQIYLGNGASNDFF 120
KE + P+ + LFYFTED Y D + LVFLR+CD++ +KR+D+IYL NG D +
Sbjct: 61 SPKEIINPITQTLFYFTEDSYIEPKVDEKGALVFLRSCDIHGIKRLDEIYLRNG-KEDSY 119
Query: 121 YTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKADNYDAAMNVRGNEIQLEIRDEDL-NIFS 179
Y + R+K KFV++GC ++F NCFCV+MG+NK + YD + NEI L+I++E+L ++F
Sbjct: 120 YKRLREKVKFVLIGCKESFDNCFCVTMGSNKTEEYDMYVKTENNEIFLDIKNEELISLFE 179
Query: 180 GREIDFDIDYVTKNEFEVDLPEKVDFMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCFSM 239
G EI IDYVT+N+ V++PE +D +++ MWDEY TRCIACGRCN+ CPTCTCF+M
Sbjct: 180 GEEIKVTIDYVTENKVSVNIPENIDERIFKSN-MWDEYSTRCIACGRCNFVCPTCTCFTM 238
Query: 240 QDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGE 299
QDI Y++N GERRRVWASCQVDG+TN+AGGH FR +G RMRFK +HK++D+ KRFG
Sbjct: 239 QDIFYRDNRKNGERRRVWASCQVDGFTNMAGGHGFRKDNGSRMRFKVMHKVYDFNKRFGY 298
Query: 300 NMCVGCGRCDDMCPQYISISEAYEKVAHAM 329
+MCVGCGRCDD+CP+YIS S K+ AM
Sbjct: 299 HMCVGCGRCDDVCPEYISFSNCINKLEKAM 328
>gi|110801377|ref|YP_696131.1| sulfite reductase, iron-sulfur subunit [Clostridium perfringens
ATCC 13124]
gi|110676024|gb|ABG85011.1| sulfite reductase, iron-sulfur subunit [Clostridium perfringens
ATCC 13124]
Length = 338
Score = 360 bits (924), Expect = 7e-98, Method: Composition-based stats.
Identities = 179/339 (52%), Positives = 251/339 (74%), Gaps = 7/339 (2%)
Query: 1 MKLRLSIEEFDRGLEELSKKYLILAPRTFEKRGTYSDTDVVRYAKVNNFSEMNWEDKSHF 60
M LRL+ + FD+ ++ L K+Y I AP+ E +G +SDTD+ RY ++++ +++ + KS F
Sbjct: 1 MGLRLTKDNFDKIIDCLKKEYKIYAPKVMEGKGRFSDTDMTRYGEIDSINDIEFSKKSDF 60
Query: 61 PAKEALLPVNEVLFYFTEDEYKVAAEDTRERLVFLRACDMNAVKRIDQIYLGNGASNDFF 120
KE LLP+ + LF+FTED++ A+ + + L+FLR+CDM++++RID IYL NG D +
Sbjct: 61 SYKEVLLPITQTLFFFTEDKFSEASVEEKNILIFLRSCDMHSLRRIDDIYLRNGFE-DPY 119
Query: 121 YTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKADNYDAAMNVRGNEIQLEIRDEDLN-IFS 179
Y K R+K KF+V+GC +F NCFCVSMGTNK D Y A + + +E+ L+I+DE+L+ IF
Sbjct: 120 YKKLREKAKFIVMGCENSFDNCFCVSMGTNKTDEYSAYIGLDNDEVLLDIKDEELSKIFE 179
Query: 180 GREI---DFDIDYVTKNEFEVDLPEKVDFMYMQNHKMWDEYDTRCIACGRCNYSCPTCTC 236
E + +V +NE +V++PE +D +++ +W+EY RCIACGRCN+ CPTCTC
Sbjct: 180 AVESNKEEVSPKFVEENETKVEVPEGIDLNIIKS-TVWNEYSERCIACGRCNFVCPTCTC 238
Query: 237 FSMQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKR 296
F+MQD+ YK+NEN GERRRVWASCQVDGYT++AGGHSFR GQRMRFK +HK++DYKKR
Sbjct: 239 FTMQDVFYKDNENAGERRRVWASCQVDGYTDMAGGHSFRKDKGQRMRFKVMHKVYDYKKR 298
Query: 297 FGENMCVGCGRCDDMCPQYISISEAYEKVAHAMRE-KDN 334
+G +MCVGCGRCDD+CP+YIS SE K+ A+ E KDN
Sbjct: 299 WGYHMCVGCGRCDDICPEYISFSECVNKLKDAIEEVKDN 337
>gi|18310422|ref|NP_562356.1| anaerobic sulfite reductase subunit A [Clostridium perfringens str.
13]
gi|18145102|dbj|BAB81146.1| anaerobic sulfite reductase subunit A [Clostridium perfringens str.
13]
Length = 338
Score = 360 bits (924), Expect = 8e-98, Method: Composition-based stats.
Identities = 179/339 (52%), Positives = 251/339 (74%), Gaps = 7/339 (2%)
Query: 1 MKLRLSIEEFDRGLEELSKKYLILAPRTFEKRGTYSDTDVVRYAKVNNFSEMNWEDKSHF 60
M LRL+ + FD+ ++ L K+Y I AP+ E +G +SDTD+ RY ++++ +++ + KS F
Sbjct: 1 MGLRLTKDNFDKIIDCLKKEYKIYAPKVMEGKGRFSDTDMTRYGEIDSINDIEFSKKSDF 60
Query: 61 PAKEALLPVNEVLFYFTEDEYKVAAEDTRERLVFLRACDMNAVKRIDQIYLGNGASNDFF 120
KE LLP+ + LF+FTED++ A+ + + L+FLR+CDM++++RID IYL NG D +
Sbjct: 61 SYKEVLLPITQTLFFFTEDKFSEASVEEKNILIFLRSCDMHSLRRIDDIYLRNGFE-DPY 119
Query: 121 YTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKADNYDAAMNVRGNEIQLEIRDEDLN-IFS 179
Y K R+K KF+V+GC +F NCFCVSMGTNK D Y A + + +E+ L+I+DE+L+ IF
Sbjct: 120 YKKLREKAKFIVMGCENSFDNCFCVSMGTNKTDEYSAYIGLDNDEVLLDIKDEELSKIFE 179
Query: 180 GREI---DFDIDYVTKNEFEVDLPEKVDFMYMQNHKMWDEYDTRCIACGRCNYSCPTCTC 236
E + +V +NE +V++PE +D +++ +W+EY RCIACGRCN+ CPTCTC
Sbjct: 180 AVESNKEEVSPKFVEENETKVEVPEGIDLNIIKS-TVWNEYSERCIACGRCNFVCPTCTC 238
Query: 237 FSMQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKR 296
F+MQD+ YK+NEN GERRRVWASCQVDGYT++AGGHSFR GQRMRFK +HK++DYKKR
Sbjct: 239 FTMQDVFYKDNENAGERRRVWASCQVDGYTDMAGGHSFRKDKGQRMRFKVMHKVYDYKKR 298
Query: 297 FGENMCVGCGRCDDMCPQYISISEAYEKVAHAMRE-KDN 334
+G +MCVGCGRCDD+CP+YIS SE K+ A+ E KDN
Sbjct: 299 WGYHMCVGCGRCDDICPEYISFSECVNKLKDAVEEVKDN 337
>gi|110803330|ref|YP_698746.1| sulfite reductase, iron-sulfur subunit [Clostridium perfringens
SM101]
gi|110683831|gb|ABG87201.1| sulfite reductase, iron-sulfur subunit [Clostridium perfringens
SM101]
Length = 338
Score = 357 bits (915), Expect = 8e-97, Method: Composition-based stats.
Identities = 178/339 (52%), Positives = 250/339 (73%), Gaps = 7/339 (2%)
Query: 1 MKLRLSIEEFDRGLEELSKKYLILAPRTFEKRGTYSDTDVVRYAKVNNFSEMNWEDKSHF 60
M LRL+ + FD+ ++ L K+Y I AP+ E +G +SDTD+ RY ++++ +++ + KS F
Sbjct: 1 MGLRLTKDNFDKIIDCLKKEYKIYAPKVMEGKGRFSDTDMTRYGEIDSINDIEFSKKSDF 60
Query: 61 PAKEALLPVNEVLFYFTEDEYKVAAEDTRERLVFLRACDMNAVKRIDQIYLGNGASNDFF 120
KE LLP+ + LF+FTED++ A+ + + L+FLR+CDM++++RID IYL NG D +
Sbjct: 61 SYKEVLLPITQTLFFFTEDKFSEASVEEKNILIFLRSCDMHSLRRIDDIYLRNGFE-DPY 119
Query: 121 YTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKADNYDAAMNVRGNEIQLEIRDEDLN-IFS 179
Y K R+K KF+V+GC +F NCFCVSMGTNK D Y A + + + + L+I+DE+L+ IF
Sbjct: 120 YKKLREKAKFIVMGCENSFDNCFCVSMGTNKTDEYSAYIGLDNDCVLLDIKDEELSKIFE 179
Query: 180 GREI---DFDIDYVTKNEFEVDLPEKVDFMYMQNHKMWDEYDTRCIACGRCNYSCPTCTC 236
E + +V +NE +V++PE +D +++ +W+EY RCIACGRCN+ CPTCTC
Sbjct: 180 AVESNKEEVSPKFVEENETKVEVPEGIDLNIIKS-TVWNEYSERCIACGRCNFVCPTCTC 238
Query: 237 FSMQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKR 296
F+MQD+ YK+NEN GERRRVWASCQVDGYT++AGGHSFR GQRMRFK +HK++DYKKR
Sbjct: 239 FTMQDVFYKDNENAGERRRVWASCQVDGYTDMAGGHSFRKDKGQRMRFKVMHKVYDYKKR 298
Query: 297 FGENMCVGCGRCDDMCPQYISISEAYEKVAHAMRE-KDN 334
+G +MCVGCGRCDD+CP+YIS SE K+ A+ E KDN
Sbjct: 299 WGYHMCVGCGRCDDICPEYISFSECVNKLKDAVEEVKDN 337
>gi|148378950|ref|YP_001253491.1| anaerobic sulfite reductase subunit A [Clostridium botulinum A str.
ATCC 3502]
gi|153931976|ref|YP_001383333.1| anaerobic sulfite reductase, subunit A [Clostridium botulinum A
str. ATCC 19397]
gi|153934778|ref|YP_001386881.1| anaerobic sulfite reductase, subunit A [Clostridium botulinum A
str. Hall]
gi|148288434|emb|CAL82511.1| anaerobic sulfite reductase subunit A [Clostridium botulinum A str.
ATCC 3502]
gi|152928020|gb|ABS33520.1| anaerobic sulfite reductase, subunit A [Clostridium botulinum A
str. ATCC 19397]
gi|152930692|gb|ABS36191.1| anaerobic sulfite reductase, subunit A [Clostridium botulinum A
str. Hall]
Length = 342
Score = 352 bits (904), Expect = 1e-95, Method: Composition-based stats.
Identities = 165/336 (49%), Positives = 238/336 (70%), Gaps = 6/336 (1%)
Query: 1 MKLRLSIEEFDRGLEELSKKYLILAPRTFEKRGTYSDTDVVRYAKVNNFSEMNWEDKSHF 60
M ++ E F+ L+ L K + + P T E +GT+SDTD +RY ++++ E+N+++KS+F
Sbjct: 1 MGFKIRKENFNSALKNLRKDFKVYGPTTLEGKGTFSDTDSIRYKEISSVEEINFKEKSNF 60
Query: 61 PAKEALLPVNEVLFYFTEDEYKVAAEDTRERLVFLRACDMNAVKRIDQIYLGNGASNDFF 120
KE +LP+ + LFYFTED + D L+FLR+CD++ +KRID IYL NG S D +
Sbjct: 61 SFKEVILPITQTLFYFTEDNWIEPKTDKENILIFLRSCDLHGLKRIDNIYLKNG-SEDPY 119
Query: 121 YTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKADNYDAAMNVRGNEIQLEIRDEDLNIFSG 180
Y R++ KFVV+GCS++F NCFCVSMGTNK++NY+ +N+ + ++I+D L +
Sbjct: 120 YKAIRERVKFVVMGCSESFENCFCVSMGTNKSENYNLGINIDEENVYVDIKDNSLEKYFN 179
Query: 181 R-----EIDFDIDYVTKNEFEVDLPEKVDFMYMQNHKMWDEYDTRCIACGRCNYSCPTCT 235
+++ + V +N+ +V++ +K++ + N W+EY RCIACGRCN+ CPTCT
Sbjct: 180 EVQIEEKLEIEPRSVKENKVKVNISDKINLAKIVNLDFWNEYSKRCIACGRCNFVCPTCT 239
Query: 236 CFSMQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKK 295
CF+MQDI YK+N GERRRVWASCQ+DGYTN+AGGH FR+ GQRMRFK +HK++DYKK
Sbjct: 240 CFNMQDIFYKDNAKSGERRRVWASCQIDGYTNMAGGHGFRIDKGQRMRFKVMHKVNDYKK 299
Query: 296 RFGENMCVGCGRCDDMCPQYISISEAYEKVAHAMRE 331
RFG +MCVGCGRCDD+CP+YIS S K+++ + E
Sbjct: 300 RFGYHMCVGCGRCDDICPEYISFSNCINKLSNLVEE 335
>gi|150015669|ref|YP_001307923.1| Sulfite reductase, Subunit A [Clostridium beijerinckii NCIMB 8052]
gi|149902134|gb|ABR32967.1| Sulfite reductase, Subunit A [Clostridium beijerinckii NCIMB 8052]
Length = 336
Score = 350 bits (897), Expect = 1e-94, Method: Composition-based stats.
Identities = 170/338 (50%), Positives = 239/338 (70%), Gaps = 5/338 (1%)
Query: 1 MKLRLSIEEFDRGLEELSKKYLILAPRTFEKRGTYSDTDVVRYAKVNNFSEMNWEDKSHF 60
M +LS + ++ E LSK+Y++ AP+ FE G++SDTD VRY ++ ++ ++ K+ +
Sbjct: 1 MGYKLSKNDINKVFEYLSKEYVVYAPKLFEGEGSFSDTDRVRYGEIKTIDDIVFDQKAQY 60
Query: 61 PAKEALLPVNEVLFYFTEDEYKVAAEDTRERLVFLRACDMNAVKRIDQIYLGNGASNDFF 120
KE LLP+++ LFYFTED K A + ++FLR+CD++AVKR+D IYL NG D++
Sbjct: 61 SYKEVLLPISQTLFYFTEDSIKEADAPKKGAIIFLRSCDLHAVKRMDDIYLRNG-QEDYY 119
Query: 121 YTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKADNYDAAMNVRGNEIQLEIRDEDL-NIFS 179
Y + R+ KF+++GC +F NCFCVSM TNK D Y+A + V G+ + ++ +DE+L +F
Sbjct: 120 YKRIRENAKFILIGCENSFENCFCVSMETNKNDEYNAYLKVNGDNVYVDAKDEELGKLFK 179
Query: 180 GRE-IDFDIDYVTKNEFEVDLPEKVDFMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCFS 238
E +D D+VT+N +V + + + M++ MW EY RCIACGRCN+ CPTCTCF+
Sbjct: 180 VDETLDVKPDFVTENSVKVWILDNLSLDVMKS-DMWKEYSARCIACGRCNFVCPTCTCFT 238
Query: 239 MQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFG 298
MQD+ Y +N GERRRVWASC VDGYTN+AGGHSFR+ GQRMRFK LHK++DYKK++G
Sbjct: 239 MQDVFYTDNGKAGERRRVWASCHVDGYTNMAGGHSFRLDKGQRMRFKVLHKVYDYKKKWG 298
Query: 299 ENMCVGCGRCDDMCPQYISISEAYEKVAHAMRE-KDNE 335
+MCVGCGRCDD+CP+YIS S K+ M+E DNE
Sbjct: 299 YHMCVGCGRCDDICPEYISFSNCVNKLKDGMKEVADNE 336
>gi|153938582|ref|YP_001390313.1| anaerobic sulfite reductase, subunit A [Clostridium botulinum F
str. Langeland]
gi|152934478|gb|ABS39976.1| anaerobic sulfite reductase, subunit A [Clostridium botulinum F
str. Langeland]
Length = 343
Score = 347 bits (891), Expect = 6e-94, Method: Composition-based stats.
Identities = 164/336 (48%), Positives = 238/336 (70%), Gaps = 6/336 (1%)
Query: 1 MKLRLSIEEFDRGLEELSKKYLILAPRTFEKRGTYSDTDVVRYAKVNNFSEMNWEDKSHF 60
M ++ E F+ L+ L K + + AP T E +GT+SDT+ +RY ++++ E+N+++KS+F
Sbjct: 2 MGFKIRKENFNNALKNLRKDFKVYAPTTLEGKGTFSDTNSIRYKEISSVEEINFKEKSNF 61
Query: 61 PAKEALLPVNEVLFYFTEDEYKVAAEDTRERLVFLRACDMNAVKRIDQIYLGNGASNDFF 120
KE +L + + LFYFTED + D L+FLR+CD++ +KRID IYL NG S D +
Sbjct: 62 SFKEVILLITQTLFYFTEDNWIEPKTDKENILIFLRSCDLHGLKRIDDIYLKNG-SEDPY 120
Query: 121 YTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKADNYDAAMNVRGNEIQLEIRDEDLNIFSG 180
Y R++ KFVV+GC+++F NCFCVSMGTNK++ Y+ +N+ + ++I+D L +
Sbjct: 121 YKAIRERVKFVVMGCNESFENCFCVSMGTNKSEIYNLGINIDKENVYVDIKDNSLEKYFN 180
Query: 181 R-----EIDFDIDYVTKNEFEVDLPEKVDFMYMQNHKMWDEYDTRCIACGRCNYSCPTCT 235
+ +++ + YV +N+ +V++ +K+ + N W+EY RCIACGRCN+ CPTCT
Sbjct: 181 KVQIEEKLEVEPKYVKENKVKVNISDKIKLDKIVNLDFWNEYSKRCIACGRCNFVCPTCT 240
Query: 236 CFSMQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKK 295
CF+MQDI YK+N GERRRVWASCQ+DGYTN+AGGH FR+ GQRMRFK +HKI+DYKK
Sbjct: 241 CFTMQDIFYKDNAKAGERRRVWASCQIDGYTNMAGGHGFRIDKGQRMRFKVMHKINDYKK 300
Query: 296 RFGENMCVGCGRCDDMCPQYISISEAYEKVAHAMRE 331
RFG +MCVGCGRCDD+CP+YIS S K+++ + E
Sbjct: 301 RFGYHMCVGCGRCDDICPEYISFSNCVNKLSNLVEE 336
>gi|15894791|ref|NP_348140.1| Anaerobic sulfite reductase (Fe-S subunit) [Clostridium
acetobutylicum ATCC 824]
gi|15024460|gb|AAK79480.1|AE007661_10 Anaerobic sulfite reductase (Fe-S subunit) [Clostridium
acetobutylicum ATCC 824]
Length = 338
Score = 347 bits (890), Expect = 7e-94, Method: Composition-based stats.
Identities = 175/340 (51%), Positives = 237/340 (69%), Gaps = 6/340 (1%)
Query: 1 MKLRLSIEEFDRGLEELSKKYLILAPRTFEKRGTYSDTDVVRYAKVNNFSEMNWEDKSHF 60
M RL+ E + +L + YLI AP+ +G +SDTD VRY K+NN E+ ++ KS F
Sbjct: 1 MGYRLTRENLNTLFHKLKEDYLIYAPKRLIGKGAFSDTDRVRYDKINNVEEIEFDVKSDF 60
Query: 61 PAKEALLPVNEVLFYFTEDEYKVAAEDTRERLVFLRACDMNAVKRIDQIYLGNGASNDFF 120
KE LLP++E LF+FTED K A + ++FLR+CD+NAVKR+DQIYL NG D +
Sbjct: 61 SFKEILLPISETLFFFTEDSVKEAEGPKKGAIIFLRSCDINAVKRLDQIYLKNGFE-DHY 119
Query: 121 YTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKADNYDAAMNVRGNEIQLEIRDEDLNIF-- 178
Y + R+K KFV++ C +F NCFCVSMGTN+AD YDA++ +R ++ ++E F
Sbjct: 120 YKRIREKVKFVLMPCKTSFENCFCVSMGTNQADMYDASVELREEHFYIDNKEEKWKEFLK 179
Query: 179 --SGREIDFDIDYVTKNEFEVDLPEKVDFMYMQNHKMWDEYDTRCIACGRCNYSCPTCTC 236
S E++ +V +N+ +V +PE + ++ KMWDEYD+RCI CGRCN+ CPTCTC
Sbjct: 180 EVSLEELEVKPSFVMENKTKVKVPEGITTKIFKS-KMWDEYDSRCINCGRCNFVCPTCTC 238
Query: 237 FSMQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKR 296
FSMQDI Y +N GERRRVWASC VDG+TN+AGG S+R K+GQRMRFK +HK++DYKKR
Sbjct: 239 FSMQDIFYTDNGKAGERRRVWASCMVDGFTNVAGGGSYRSKNGQRMRFKVMHKVYDYKKR 298
Query: 297 FGENMCVGCGRCDDMCPQYISISEAYEKVAHAMREKDNEE 336
G +MCVGCGRCDD+CP+YIS S K+ A++E ++ E
Sbjct: 299 NGYHMCVGCGRCDDICPEYISFSNCINKLKGAIKEVEDNE 338
>gi|153810354|ref|ZP_01963022.1| hypothetical protein RUMOBE_00735 [Ruminococcus obeum ATCC 29174]
gi|149833533|gb|EDM88614.1| hypothetical protein RUMOBE_00735 [Ruminococcus obeum ATCC 29174]
Length = 338
Score = 339 bits (869), Expect = 2e-91, Method: Composition-based stats.
Identities = 163/328 (49%), Positives = 227/328 (69%), Gaps = 5/328 (1%)
Query: 1 MKLRLSIEEFDRGLEELSKKYLILAPRTFEKRGTYSDTDVVRYAKVNNFSEMNWEDKSHF 60
M RL+ +E E L K Y + P+ ++ G +SDTD+VRY +N++ E+ W+ KS +
Sbjct: 7 MGKRLNSDEMQTIFEILQKSYDVYGPKIYQGTGCFSDTDIVRYGLLNSWEELVWDQKSDY 66
Query: 61 PAKEALLPVNEVLFYFTEDEYKVAAEDTRERLVFLRACDMNAVKRIDQIYLGNGASNDFF 120
KE L PV+E + YFTEDE K A R+RL+FL++CD +A+KR+D++YL NGA D++
Sbjct: 67 SFKEVLFPVSETILYFTEDEMKTADGVARQRLIFLKSCDFHALKRLDEMYLKNGAE-DYY 125
Query: 121 YTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKADNYDAAMNVRGNEIQLEIRDEDLNIF-- 178
Y + R+ T F V+GC ++ +NCFCVSMGTN+ + YD + +E+R +L +
Sbjct: 126 YRRMRENTVFAVMGCKESGKNCFCVSMGTNRCEEYDMYIFPDEKGCYMELRCRELEVLLW 185
Query: 179 -SGREIDFDIDYVTKNEFEVDLPEKVDFMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCF 237
G+ +++V KNE V++PE + + Q+ MW EY +RCI CGRCN+ CPTCTCF
Sbjct: 186 DYGQNAQEKLNFVEKNEIHVEIPENLPDIIHQD-SMWQEYGSRCIGCGRCNFVCPTCTCF 244
Query: 238 SMQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRF 297
+MQDI YK+N GERRRVWASCQVDGY++IAGGHSFR G+RMRFK LHK+ DYKKRF
Sbjct: 245 TMQDIFYKDNPKAGERRRVWASCQVDGYSDIAGGHSFRQSQGERMRFKVLHKVADYKKRF 304
Query: 298 GENMCVGCGRCDDMCPQYISISEAYEKV 325
G +MCVGCGRC+++CP+YIS +K+
Sbjct: 305 GYHMCVGCGRCENVCPEYISYVACLQKL 332
>gi|28212068|ref|NP_783012.1| anaerobic sulfite reductase subunit A [Clostridium tetani E88]
gi|28204511|gb|AAO36949.1| anaerobic sulfite reductase subunit A [Clostridium tetani E88]
Length = 333
Score = 325 bits (832), Expect = 3e-87, Method: Composition-based stats.
Identities = 164/335 (48%), Positives = 228/335 (68%), Gaps = 4/335 (1%)
Query: 1 MKLRLSIEEFDRGLEELSKKYLILAPRTFEKRGTYSDTDVVRYAKVNNFSEMNWEDKSHF 60
M + +EF+ L++L+K Y I AP+ +GT+SDTD+VRY +V E+ + KS F
Sbjct: 1 MGFIMKTKEFNNILDKLAKDYKIYAPKLLRNKGTFSDTDMVRYGEVKTIDEIEFNKKSLF 60
Query: 61 PAKEALLPVNEVLFYFTEDEYKVAAEDTRERLVFLRACDMNAVKRIDQIYLGNGASNDFF 120
KE +LP+ + LFYFTEDE D + L+FLR+CD++AVKR+D+IYL NG D +
Sbjct: 61 SPKETILPITQTLFYFTEDEVLEPKTDEKNILIFLRSCDIHAVKRLDEIYLKNG-HEDIY 119
Query: 121 YTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKADNYDAAMNVRGNEIQLEIRDED-LNIFS 179
Y + R+K KFV++ C K+F NCFC SMGTNK ++Y + + +++ + +DED L+IF
Sbjct: 120 YKRLREKVKFVLIECEKSFENCFCTSMGTNKTEDYSLFVKRQEDKVLVNCKDEDFLSIFK 179
Query: 180 G-REIDFDIDYVTKNEFEVDLPEKVDFMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCFS 238
E + ++ +NE EV +P+K+D ++ W EY +RCIACGRCN C TC CF+
Sbjct: 180 DFEEEKVEPKFIEENELEVKIPKKLDNSIFES-DFWKEYSSRCIACGRCNTVCGTCACFT 238
Query: 239 MQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFG 298
MQD+ YK+N+N GERRRVWASCQVDG+T +AGGH FR G RMRFK +HKI+D+ KRFG
Sbjct: 239 MQDVFYKDNKNAGERRRVWASCQVDGFTTMAGGHEFRKNKGDRMRFKVMHKIYDFNKRFG 298
Query: 299 ENMCVGCGRCDDMCPQYISISEAYEKVAHAMREKD 333
+MCVGCGRCDD C +YIS S K+ + E++
Sbjct: 299 YHMCVGCGRCDDACQEYISFSNCVNKLNAEIGEEN 333
>gi|83590018|ref|YP_430027.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica ATCC
39073]
gi|83572932|gb|ABC19484.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica ATCC
39073]
Length = 340
Score = 315 bits (808), Expect = 2e-84, Method: Composition-based stats.
Identities = 143/322 (44%), Positives = 209/322 (64%), Gaps = 7/322 (2%)
Query: 14 LEELSKKYLILAPRTFEKRGTYSDTDVVRYAKVNNFSEMNWEDKSHFPAKEALLPVNEVL 73
L+EL + P + +G + TD++ Y V +++ W+ ++ F KE P+ E L
Sbjct: 14 LDELVTSRRVFGPVRYAGKGRLAGTDLITYGPVKGLADVVWDARTTFSPKEVFFPIKESL 73
Query: 74 FYFTEDEYK---VAAEDTRERLVFLRACDMNAVKRIDQIYLGNGASNDFFYTKTRKKTKF 130
FYF++ E + A + E +VF+RACD+NAV R+D+I+L NG + D +Y + R+ T F
Sbjct: 74 FYFSDGEITESALKASEILETVVFIRACDLNAVTRLDKIFLENGPAADNYYARRRQHTHF 133
Query: 131 VVVGCSKTFRNCFCVSMGTNKADNYDAAMNVRGNEIQLEIRDE---DLNIFSGREIDFDI 187
V++ C ++F CFCVSMGTN+A + AA+ G+ L+ E L G+ D +
Sbjct: 134 VLMECQESFPGCFCVSMGTNRATGHQAALRPEGSYYLLQALAEPWLSLGERYGQPADVEP 193
Query: 188 DYVTKNEFEVDLPEKVDFMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKEN 247
+V +N V +P++VD Q H++W EY +RCIACGRC SCPTC+CFS+QDI Y++N
Sbjct: 194 VWVQENSLTVKVPDRVDTSLFQ-HELWREYSSRCIACGRCTLSCPTCSCFSVQDIFYRDN 252
Query: 248 ENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGENMCVGCGR 307
GERRRVWASCQ+DG+T++AGGH R G+RMRFK LHKI D+++RFG NMCVGCGR
Sbjct: 253 PERGERRRVWASCQIDGFTDMAGGHKVREDRGERMRFKVLHKIDDFRRRFGINMCVGCGR 312
Query: 308 CDDMCPQYISISEAYEKVAHAM 329
C+++CP+YIS + ++ M
Sbjct: 313 CEEVCPEYISFARCVNTLSQLM 334
>gi|90412213|ref|ZP_01220219.1| anaerobic sulfite reductase subunit A [Photobacterium profundum
3TCK]
gi|90326937|gb|EAS43322.1| anaerobic sulfite reductase subunit A [Photobacterium profundum
3TCK]
Length = 362
Score = 311 bits (798), Expect = 3e-83, Method: Composition-based stats.
Identities = 148/347 (42%), Positives = 221/347 (63%), Gaps = 10/347 (2%)
Query: 1 MKLRLSIEEFDRGLEELSKKYLILAPRTFEKRGTYSDTDVVRYAKVNNFSEMNWEDKSHF 60
M L+ E ++ ++ L Y ILAP K G ++ TD + Y V S++ W++KSHF
Sbjct: 1 MATYLTHTELNQVIQTLLPHYNILAPGYENKGGRFAGTDNLTYLSVTQASDIVWQEKSHF 60
Query: 61 PAKEALLPVNEVLFYFTEDEYKVAAEDTRERLVFLRACDMNAVKRIDQIYLGNGASNDFF 120
KEA+ P+ + LF+F DE + + + R L+FLRACD+NA+KR+D +YL NG + D +
Sbjct: 61 SPKEAVTPITQTLFHFNGDELRESKIEARPTLIFLRACDINALKRLDHMYLNNGNNEDIY 120
Query: 121 YTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKADNYDAAMNVRGNEIQLEIRDEDLNIF-- 178
Y + R++ K V++ C+++F NCFCVSM +N DNYDAA N + +D +L +
Sbjct: 121 YRRLRQQLKLVLIECAQSFENCFCVSMNSNTTDNYDAAARFDANGVAFMAKDPELQNYLN 180
Query: 179 -SGREIDFDIDYVTKNEFEVDLPEKV------DFMYMQNHKMWDEYDTRCIACGRCNYSC 231
+G+EI+F +V N +V P++V + H +W EYD+RCI CGRC SC
Sbjct: 181 NAGKEIEFTPQFVQSNPTKVRTPDQVCNDPNLIRQILHKHPVWSEYDSRCIGCGRCTTSC 240
Query: 232 PTCTCFSMQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIH 291
PTC+C++M D+ Y EN +GERRR ASC +G+ ++AGGHSFR K G+R+R++ LHK++
Sbjct: 241 PTCSCYNMFDVAYDENHKVGERRRQQASCMTNGFADMAGGHSFRDKTGERLRYRALHKVN 300
Query: 292 DYKKRFG-ENMCVGCGRCDDMCPQYISISEAYEKVAHAMREKDNEEL 337
DYK R G ++MCVGCGRCDD CP YIS + ++ + + N+E+
Sbjct: 301 DYKARQGHDHMCVGCGRCDDRCPHYISFTNIINRMTDIVEQHLNDEV 347
>gi|117620268|ref|YP_857085.1| anaerobic sulfite reductase subunit A [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117561675|gb|ABK38623.1| anaerobic sulfite reductase subunit A [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 352
Score = 311 bits (798), Expect = 4e-83, Method: Composition-based stats.
Identities = 143/328 (43%), Positives = 214/328 (65%), Gaps = 10/328 (3%)
Query: 14 LEELSKKYLILAPRTFEKRGTYSDTDVVRYAKVNNFSEMNWEDKSHFPAKEALLPVNEVL 73
E L Y I+AP + G +SDTD V Y + + +++ W++KSHF KE +LP+ + L
Sbjct: 14 FERLLPDYRIMAPAAEYRGGRFSDTDNVTYHSIRHPADLVWQEKSHFSPKEVVLPITQTL 73
Query: 74 FYFTEDEYKVAAEDTRERLVFLRACDMNAVKRIDQIYLGNGASNDFFYTKTRKKTKFVVV 133
F+F E + + + + L+FLR+CD++A++R+DQ+YL NG ++D +Y + R K K V++
Sbjct: 74 FHFDNLELRESKVEAKPTLLFLRSCDIHALRRLDQVYLKNGHNSDVYYARLRSKLKLVLL 133
Query: 134 GCSKTFRNCFCVSMGTNKADNYDAAMNVRGNEIQLEIRDEDLNIF---SGREIDFDIDYV 190
C ++F NCFCVSMG+N+ +Y AA+ + ++E++D +L + G DF ++V
Sbjct: 134 ECRESFENCFCVSMGSNETRDYAAAIRLSDEGARIEVKDPELLGYFAEQGEPDDFTPEFV 193
Query: 191 TKNEFEVDLPEKV------DFMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHY 244
N +V P+ V + H +W+EYD+RCI CGRC SCPTC+C+S+ D+ Y
Sbjct: 194 QSNPVKVRTPDSVCDDPKRIRQILTAHPVWNEYDSRCIGCGRCTTSCPTCSCYSVHDLTY 253
Query: 245 KENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFG-ENMCV 303
EN GERRR WASC VDG++++AGGH FR KHG+R+R++ LHK++DYK R G E+MCV
Sbjct: 254 AENPKQGERRRQWASCMVDGFSDMAGGHGFRAKHGERLRYRALHKVNDYKARQGEEHMCV 313
Query: 304 GCGRCDDMCPQYISISEAYEKVAHAMRE 331
GCGRCDD CP YIS S K+ + +
Sbjct: 314 GCGRCDDRCPHYISFSNIINKMTDVVEQ 341
>gi|153833480|ref|ZP_01986147.1| sulfite reductase, subunit A [Vibrio harveyi HY01]
gi|148870255|gb|EDL69190.1| sulfite reductase, subunit A [Vibrio harveyi HY01]
Length = 342
Score = 303 bits (777), Expect = 8e-81, Method: Composition-based stats.
Identities = 141/336 (41%), Positives = 217/336 (64%), Gaps = 9/336 (2%)
Query: 5 LSIEEFDRGLEELSKKYLILAPRTFEKRGTYSDTDVVRYAKVNNFSEMNWEDKSHFPAKE 64
L+ ++ +E L + Y ++AP E G ++ T + Y ++ + ++ W++KSHF KE
Sbjct: 5 LTTQQMGSAIEALRQSYKVMAPVYEEYAGRFAHTPNLDYQELERYDQLEWKEKSHFSPKE 64
Query: 65 ALLPVNEVLFYFTEDEYKVAAEDTRERLVFLRACDMNAVKRIDQIYLGNGASNDFFYTKT 124
+ P+ E LF+F DE + ++ D R +FLRACD+NA+K +D ++L NG DF+Y +
Sbjct: 65 IVFPITETLFWFNADELRESSVDARPVFLFLRACDINALKSLDYMFLENGGHEDFYYKRL 124
Query: 125 RKKTKFVVVGCSKTFRNCFCVSMGTNKADNYDAAMNVRGNEIQLEIRDEDLNIF--SGRE 182
R+K K V++ CS++F NCFCVSMGTNK DN+ A++ + + I+D +L + G++
Sbjct: 125 RQKLKLVLIECSESFENCFCVSMGTNKTDNFAASVQFSDHGAIVTIKDPELTPYFSQGKD 184
Query: 183 IDFDIDYVTKNEFEVDLPEKV--DFMYMQN----HKMWDEYDTRCIACGRCNYSCPTCTC 236
++ + +V N +V P+ V D ++ H +W EYD+RCI CGRC SCPTC C
Sbjct: 185 VEHSVSFVQSNPVKVRTPDSVCDDSTKIREVLLGHPVWSEYDSRCIGCGRCTSSCPTCAC 244
Query: 237 FSMQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKR 296
F++ D+ Y + +GERRR ASC +DG++++AGGHSFR K G+R+R++ LHK++D+K R
Sbjct: 245 FNVFDVVYNQEAKVGERRRQHASCMIDGFSDMAGGHSFRHKTGERLRYRALHKVNDFKSR 304
Query: 297 FGE-NMCVGCGRCDDMCPQYISISEAYEKVAHAMRE 331
GE +MCVGCGRCDD CP YIS S K+ + E
Sbjct: 305 QGEHHMCVGCGRCDDRCPHYISFSNIINKMTSIVEE 340
>gi|114843398|ref|ZP_01453863.1| 4Fe-4S ferredoxin, iron-sulfur binding [Thermoanaerobacter
ethanolicus X514]
gi|114806609|gb|EAU58385.1| 4Fe-4S ferredoxin, iron-sulfur binding [Thermoanaerobacter
ethanolicus X514]
Length = 349
Score = 292 bits (748), Expect = 2e-77, Method: Composition-based stats.
Identities = 150/348 (43%), Positives = 234/348 (67%), Gaps = 11/348 (3%)
Query: 1 MKLRLSIEEFDRGLEELSKKYLILAPRTFEKRGTYSDTDVVRYAKVNNFSEMNWEDKSHF 60
M +SI+ + L+EL K+Y + AP FEKRG YSDTD++RYA++N+ ++ +++KS F
Sbjct: 1 MSYCVSIKRMNEILKELQKEYKVYAPMRFEKRGRYSDTDLIRYAEINSIEDVVYDEKSDF 60
Query: 61 PAKEALLPVNEVLFYFTEDEYKVAAEDTRERLVFLRACDMNAVKRIDQIYLGNGASNDFF 120
KE + P+ + LFYFTE EY + D ++ ++F+R CD+N +R+D I+L NG + D +
Sbjct: 61 SPKEVIYPITQALFYFTEYEYMESKVDDKKIMIFVRPCDINGFRRLDTIFLKNGGTEDIY 120
Query: 121 YTKTRKKTKFVVVGCSKT-FRNCFCVSMGTNKADNYDAAMNVRGNEIQLEIRDEDL-NIF 178
Y + R+K KF+++ C + + +CFCVSMG+NK D+Y A+ + I +EI+D++ N+F
Sbjct: 121 YKRLREKVKFILMECKEGGWDSCFCVSMGSNKTDDYSLAVRFGDDNILVEIKDDEFTNLF 180
Query: 179 SG-REIDFDIDYVTKNEFEVDLPEKVDFMYMQ---NHKMWDEYDTRCIACGRCNYSCPTC 234
+ RE++F ++VT N +V++PE ++ + MW+ Y++RCI+CG C C TC
Sbjct: 181 ADEREVEFTPEFVTSNPTKVNIPEIDSHELLEKIYDLDMWESYNSRCISCGACTAVCITC 240
Query: 235 TCFSMQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYK 294
+CF+ D+ Y EN +GERRRV ASC + +T +AGG SFR G+RMRF+TLHKI+DYK
Sbjct: 241 SCFTTLDVTYTENGKVGERRRVQASCMHEDFTTMAGGLSFRKTAGERMRFRTLHKIYDYK 300
Query: 295 KRF-GENMCVGCGRCDDMCPQYIS----ISEAYEKVAHAMREKDNEEL 337
RF E+MCVGCGRCD+ CP+ IS I+ Y++V + + +++
Sbjct: 301 LRFKDEHMCVGCGRCDERCPELISFPATINRLYDEVEKLKKAETTKDI 348
>gi|34764356|ref|ZP_00145179.1| Anaerobic sulfite reductase subunit A [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
gi|27885871|gb|EAA23224.1| Anaerobic sulfite reductase subunit A [Fusobacterium nucleatum
subsp. vincentii ATCC 49256]
Length = 149
Score = 291 bits (746), Expect = 4e-77, Method: Composition-based stats.
Identities = 144/148 (97%), Positives = 144/148 (97%)
Query: 208 MQNHKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVDGYTN 267
MQNHKMWDEYDTRCI CGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVDGYTN
Sbjct: 1 MQNHKMWDEYDTRCIGCGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVDGYTN 60
Query: 268 IAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGENMCVGCGRCDDMCPQYISISEAYEKVAH 327
IAGGHSFR K GQRMRFKTLHKIHDYKKRFGENMCVGCGRCDDMCPQYISISEAYEKVA
Sbjct: 61 IAGGHSFRQKQGQRMRFKTLHKIHDYKKRFGENMCVGCGRCDDMCPQYISISEAYEKVAR 120
Query: 328 AMREKDNEELISEVYEKVVKAMKEKREE 355
AMREKDNEELISEVYEKVVKAMKEKREE
Sbjct: 121 AMREKDNEELISEVYEKVVKAMKEKREE 148
>gi|56412574|ref|YP_149649.1| anaerobic sulfite reductase subunit A [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|56126831|gb|AAV76337.1| anaerobic sulfite reductase subunit A [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
Length = 347
Score = 291 bits (744), Expect = 5e-77, Method: Composition-based stats.
Identities = 151/346 (43%), Positives = 221/346 (63%), Gaps = 10/346 (2%)
Query: 1 MKLRLSIEEFDRGLEELSKKYLILAPRTFEKRGTYSDTDVVRYAKVNNFSEMNWEDKSHF 60
M ++++ +EF ++ L+KK+ + AP + G +SDTD + Y +++ + ++ W +KSH
Sbjct: 1 MAIKITPDEFSLLIQRLNKKWRVFAPSAEFRGGRFSDTDNIIYQRISGWRDLIWHEKSHM 60
Query: 61 PAKEALLPVNEVLFYFTEDEYKVAAEDTRERLVFLRACDMNAVKRIDQIYLGNGASNDFF 120
+ P+ E LFYF +D ++A DT ++F RACD+NA+ R+D +YL NG ++D+
Sbjct: 61 SPNTIIAPITETLFYFDKDTIQIAETDTSPIIIFARACDINAMSRLDYMYLSNGNNSDYS 120
Query: 121 YTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKADNYDAAMNVRGNEIQLEIRDEDLNIFS- 179
Y R+ +FV++ C K+F NCFCVSMGTNK D Y AAM + IRD +
Sbjct: 121 YQLLREHIRFVLIECEKSFENCFCVSMGTNKTDCYSAAMRFSDEGALVSIRDPFIEAAIQ 180
Query: 180 --GREIDFDIDYVTKNEFEVDLPEKV--DFMYMQN----HKMWDEYDTRCIACGRCNYSC 231
G+E D+ +V++N V P+ V D +++ H +WD YD+RCI+CGRC C
Sbjct: 181 GLGQEADYTPSFVSENRETVVTPDSVCRDPQKIRDILTRHPLWDAYDSRCISCGRCTTGC 240
Query: 232 PTCTCFSMQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIH 291
PTCTC+S+ D+ Y EN GERRR WASC V G++++AGGH FR K G+R+R++ LHK++
Sbjct: 241 PTCTCYSVFDVAYDENPQRGERRRQWASCMVPGFSDMAGGHGFREKPGERLRYRALHKVN 300
Query: 292 DYKKRFG-ENMCVGCGRCDDMCPQYISISEAYEKVAHAMREKDNEE 336
DYK R G E+MCVGCGRCDD CPQYI S K+ A+R+ EE
Sbjct: 301 DYKARNGIEHMCVGCGRCDDRCPQYIKFSLIINKMTAAVRQALAEE 346
>gi|16765868|ref|NP_461483.1| anaerobic sulfide reductase [Salmonella typhimurium LT2]
gi|114281|sp|P26474|ASRA_SALTY Anaerobic sulfite reductase subunit A (Anaerobic sulfite reductase
iron-sulfur subunit)
gi|153882|gb|AAA99275.1| anaerobic sulfite reductase
gi|16421094|gb|AAL21442.1| anaerobic sulfide reductase [Salmonella typhimurium LT2]
Length = 347
Score = 290 bits (742), Expect = 9e-77, Method: Composition-based stats.
Identities = 150/348 (43%), Positives = 220/348 (63%), Gaps = 14/348 (4%)
Query: 1 MKLRLSIEEFDRGLEELSKKYLILAPRTFEKRGTYSDTDVVRYAKVNNFSEMNWEDKSHF 60
M ++++ +EF ++ L+KK+ + AP + G +SDTD + Y +++ + ++ W +KSH
Sbjct: 1 MAIKITPDEFSLLIQRLNKKWRVFAPSAEFRGGRFSDTDNIIYQRISGWRDLIWHEKSHM 60
Query: 61 PAKEALLPVNEVLFYFTEDEYKVAAEDTRERLVFLRACDMNAVKRIDQIYLGNGASNDFF 120
+ P+ E LFYF +D ++A DT ++F RACD+NA+ R+D +YL NG ++D+
Sbjct: 61 SPNTIIAPITETLFYFDKDTIQIAETDTSPIIIFARACDINAMSRLDYMYLSNGNNSDYS 120
Query: 121 YTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKADNYDAAMNVRGNEIQLEIRDEDLNIFS- 179
Y R+ +FV++ C ++F NCFCVSMGTNK D Y AAM + IRD +
Sbjct: 121 YQLLREHIRFVLIECEESFENCFCVSMGTNKTDCYSAAMRFSDEGALVSIRDPFIEAAIQ 180
Query: 180 --GREIDFDIDYVTKNEFEVDLPEKV--------DFMYMQNHKMWDEYDTRCIACGRCNY 229
G+E D+ +V++N V P+ V D + +H +WD YD+RCI+CGRC
Sbjct: 181 GLGQEADYTPSFVSENRETVVTPDSVCHDPQKIRDI--LTHHPLWDAYDSRCISCGRCTT 238
Query: 230 SCPTCTCFSMQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHK 289
CPTCTC+S+ D+ Y EN GERRR WASC V G++++AGGH FR K G+R+R++ LHK
Sbjct: 239 GCPTCTCYSVFDVAYDENPQRGERRRQWASCMVPGFSDMAGGHGFREKPGERLRYRALHK 298
Query: 290 IHDYKKRFG-ENMCVGCGRCDDMCPQYISISEAYEKVAHAMREKDNEE 336
++DYK R G E+MCVGCGRCDD CPQYI S K+ A+R+ EE
Sbjct: 299 VNDYKARNGIEHMCVGCGRCDDRCPQYIKFSLIINKMTAAVRQALAEE 346
>gi|76795378|ref|ZP_00777751.1| 4Fe-4S ferredoxin, iron-sulfur binding [Thermoanaerobacter
ethanolicus ATCC 33223]
gi|76589186|gb|EAO65585.1| 4Fe-4S ferredoxin, iron-sulfur binding [Thermoanaerobacter
ethanolicus ATCC 33223]
Length = 350
Score = 288 bits (737), Expect = 4e-76, Method: Composition-based stats.
Identities = 150/336 (44%), Positives = 227/336 (67%), Gaps = 11/336 (3%)
Query: 1 MKLRLSIEEFDRGLEELSKKYLILAPRTFEKRGTYSDTDVVRYAKVNNFSEMNWEDKSHF 60
M ++I+ + L+EL K+Y + AP FEKRG YSDTD++RYA++N+ ++ +++KS F
Sbjct: 1 MSYCVNIKRMNEILKELQKEYKVYAPVRFEKRGRYSDTDLIRYAEINSIEDVVYDEKSDF 60
Query: 61 PAKEALLPVNEVLFYFTEDEYKVAAEDTRERLVFLRACDMNAVKRIDQIYLGNGASNDFF 120
KE + P+ + LFYFTE EY + D ++ L+F R CD+N +R+D I+L NG + D +
Sbjct: 61 SPKEVIYPITQALFYFTEYEYMESKVDDKKILIFARPCDINGFRRLDTIFLKNGGTEDIY 120
Query: 121 YTKTRKKTKFVVVGCSK-TFRNCFCVSMGTNKADNYDAAMNVRGNEIQLEIRDEDL-NIF 178
Y + R+K KF+++ C + + +CFCVSMG+NK D+Y A+ ++I +EI+D++ N+F
Sbjct: 121 YKRLREKVKFILMECKEGGWDSCFCVSMGSNKTDDYSLAVRFGDDKILVEIKDDEFTNLF 180
Query: 179 SG-REIDFDIDYVTKNEFEVDLPEKVDFMYMQ---NHKMWDEYDTRCIACGRCNYSCPTC 234
+ RE++F ++VT N +V++PE ++ + MW Y++RCI+CG C C TC
Sbjct: 181 ADEREVEFTPEFVTSNPTKVNIPEIDSHELLEKIYDLDMWKSYNSRCISCGACTAVCITC 240
Query: 235 TCFSMQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYK 294
+CF+ D+ Y EN +GERRRV ASC + +T +AGG SFR G+RMRF+TLHKI+DYK
Sbjct: 241 SCFNTLDVIYTENGKVGERRRVQASCMHEDFTTMAGGLSFRKTAGERMRFRTLHKIYDYK 300
Query: 295 KRF-GENMCVGCGRCDDMCPQYIS----ISEAYEKV 325
RF E MCVGCGRCD+ CP+ IS I+ Y++V
Sbjct: 301 LRFKDEYMCVGCGRCDERCPELISFPATINRLYDEV 336
>gi|16761462|ref|NP_457079.1| anaerobic sulfite reductase subunit A [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29140841|ref|NP_804183.1| anaerobic sulfite reductase subunit A [Salmonella enterica subsp.
enterica serovar Typhi Ty2]
gi|25514254|pir||AC0825 anaerobic sulfite reductase chain A (EC 1.8.2.-) [imported] -
Salmonella enterica subsp. enterica serovar Typhi
(strain CT18)
gi|16503762|emb|CAD02751.1| anaerobic sulfite reductase subunit A [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29136466|gb|AAO68032.1| anaerobic sulfite reductase subunit A [Salmonella enterica subsp.
enterica serovar Typhi Ty2]
Length = 347
Score = 287 bits (735), Expect = 7e-76, Method: Composition-based stats.
Identities = 149/346 (43%), Positives = 221/346 (63%), Gaps = 10/346 (2%)
Query: 1 MKLRLSIEEFDRGLEELSKKYLILAPRTFEKRGTYSDTDVVRYAKVNNFSEMNWEDKSHF 60
M ++++ +EF ++ L+KK+ + AP + G +SDTD + Y +++ + ++ W +KSH
Sbjct: 1 MAIKITPDEFSLLIQRLNKKWRVFAPSAEFRGGRFSDTDNIIYQRISGWRDLIWHEKSHM 60
Query: 61 PAKEALLPVNEVLFYFTEDEYKVAAEDTRERLVFLRACDMNAVKRIDQIYLGNGASNDFF 120
+ P+ E LFYF ++ ++A DT ++F RACD+NA+ R+D +YL NG ++D+
Sbjct: 61 SPNTIIAPITETLFYFDKNTIQIAETDTSPIIIFARACDINAMSRLDYMYLSNGNNSDYS 120
Query: 121 YTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKADNYDAAMNVRGNEIQLEIRDEDLNIFS- 179
Y R+ +FV++ C ++F NCFCVSMGTNK D Y AAM + IRD +
Sbjct: 121 YQLLREHIRFVLIECEESFENCFCVSMGTNKTDCYSAAMRFSDEGALVSIRDPFIEAAIQ 180
Query: 180 --GREIDFDIDYVTKNEFEVDLPEKV--DFMYMQN----HKMWDEYDTRCIACGRCNYSC 231
G+E D+ +V++N V P+ V D +++ H +WD YD+RCI+CGRC C
Sbjct: 181 GLGQEADYTPSFVSENRETVVTPDSVCRDPQKIRDILTRHPLWDAYDSRCISCGRCTTGC 240
Query: 232 PTCTCFSMQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIH 291
PTCTC+S+ D+ Y EN GERRR WASC V G++++AGGH FR K G+R+R++ LHK++
Sbjct: 241 PTCTCYSVFDVAYDENPQRGERRRQWASCMVPGFSDMAGGHGFREKPGERLRYRALHKVN 300
Query: 292 DYKKRFG-ENMCVGCGRCDDMCPQYISISEAYEKVAHAMREKDNEE 336
DYK R G E+MCVGCGRCDD CPQYI S K+ A+R+ EE
Sbjct: 301 DYKARNGIEHMCVGCGRCDDRCPQYIKFSLIINKMTAAVRQALAEE 346
>gi|110798684|ref|YP_696225.1| anaerobic sulfite reductase, A subunit [Clostridium perfringens
ATCC 13124]
gi|110673331|gb|ABG82318.1| anaerobic sulfite reductase, A subunit [Clostridium perfringens
ATCC 13124]
Length = 343
Score = 286 bits (731), Expect = 2e-75, Method: Composition-based stats.
Identities = 145/338 (42%), Positives = 228/338 (67%), Gaps = 7/338 (2%)
Query: 1 MKLRLSIEEFDRGLEELSKKYLILAPRTFEKRGTYSDTDVVRYAKVNNFSEMNWEDKSHF 60
M +L+++E + EL K+Y+I AP+ FEK+G YSDTD+++Y +NN E+ +KS +
Sbjct: 1 MGYKLNLKEVNDLFNELKKEYIIYAPKRFEKQGRYSDTDIIKYDVINNVEEIVHNEKSTY 60
Query: 61 PAKEALLPVNEVLFYFTEDEYKVAAEDTRER-LVFLRACDMNAVKRIDQIYLGNGASNDF 119
P KE + P+++ L+YF E+E++ + D++++ L+F R CD+NA +R D IYL NG D
Sbjct: 61 PVKEVITPISQTLYYFIENEFRESKMDSQKKILIFARPCDINAQRRQDTIYLKNGNFEDT 120
Query: 120 FYTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKADNYDAAMNVRGNEIQLEIRDE--DLNI 177
FY + R + KF+ + C++ + CFC +M +NK D+Y A+ + + +++E D
Sbjct: 121 FYKRMRDRVKFICMECTEGWDTCFCTTMNSNKTDDYSLAVRFNEDNLLFNVKEEEFDKYF 180
Query: 178 FSGREIDFDIDYVTKNEFEVDLPE--KVDFM-YMQNHKMWDEYDTRCIACGRCNYSCPTC 234
E +F++ ++ +N +V+LPE V+ + +++HKMW+EY+ RCI CG C +C TC
Sbjct: 181 EGKEEEEFELKFIEENIAKVELPEIESVEVLNKLKDHKMWEEYNKRCIQCGSCTLACSTC 240
Query: 235 TCFSMQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYK 294
TCF+ +DI + N N+GER+R+ ASC VDG+ +AGGH FR G +MR+K +HKIHDYK
Sbjct: 241 TCFTTRDIVHDSNHNIGERKRIQASCHVDGFDEMAGGHVFRKTAGDKMRYKVMHKIHDYK 300
Query: 295 KRFG-ENMCVGCGRCDDMCPQYISISEAYEKVAHAMRE 331
+FG E+MCVGCGRC D CP++ISI+ KV+ A++E
Sbjct: 301 VQFGEEHMCVGCGRCTDRCPEHISITATINKVSKAVKE 338
>gi|18310520|ref|NP_562454.1| anaerobic sulfite reductase subunit A [Clostridium perfringens str.
13]
gi|18145200|dbj|BAB81244.1| anaerobic sulfite reductase subunit A [Clostridium perfringens str.
13]
Length = 343
Score = 286 bits (731), Expect = 2e-75, Method: Composition-based stats.
Identities = 142/338 (42%), Positives = 225/338 (66%), Gaps = 7/338 (2%)
Query: 1 MKLRLSIEEFDRGLEELSKKYLILAPRTFEKRGTYSDTDVVRYAKVNNFSEMNWEDKSHF 60
M +L+++E + EL K+Y+I AP+ FEK+G YSDTD+++Y +NN E+ +KS +
Sbjct: 1 MGYKLNLKEVNDLFNELKKEYIIYAPKRFEKQGRYSDTDIIKYDVINNVEEIVHNEKSTY 60
Query: 61 PAKEALLPVNEVLFYFTEDEYKVAAEDTRER-LVFLRACDMNAVKRIDQIYLGNGASNDF 119
P KE + P+++ L+YF E+E++ + D++++ L+F R CD+NA +R D IYL NG D
Sbjct: 61 PVKEVITPISQTLYYFIENEFRESKMDSQKKILIFARPCDINAQRRQDTIYLKNGNFEDT 120
Query: 120 FYTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKADNYDAAMNVRGNEIQLEIRDEDLNIFS 179
FY + R + KF+ + C++ + CFC +M +NK D+Y A+ + + +++E+ N +
Sbjct: 121 FYKRMRDRVKFICMECTEGWDTCFCTTMNSNKTDDYSLAVRFNEDNLLFNVKEEEFNKYF 180
Query: 180 GREIDFDIDYVTK--NEFEVDLPE--KVDFM-YMQNHKMWDEYDTRCIACGRCNYSCPTC 234
+ + + + N +V+LPE V+ + +++HKMW+EY+ RCI CG C +C TC
Sbjct: 181 EGKEEEEFELKFIEENIAKVELPEIESVEVLNKLKDHKMWEEYNKRCIQCGSCTLACSTC 240
Query: 235 TCFSMQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYK 294
TCF+ +DI + N+GER+R+ ASC VDG+ +AGGH FR G +MR+K +HKIHDYK
Sbjct: 241 TCFTTRDIVHDSKHNIGERKRIQASCHVDGFDEMAGGHVFRKTAGDKMRYKVMHKIHDYK 300
Query: 295 KRFG-ENMCVGCGRCDDMCPQYISISEAYEKVAHAMRE 331
+FG E+MCVGCGRC D CP++ISI+ KV+ A++E
Sbjct: 301 AQFGEEHMCVGCGRCTDRCPEHISITATINKVSKAVKE 338
>gi|62181112|ref|YP_217529.1| anaerobic sulfide reductase [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|62128745|gb|AAX66448.1| anaerobic sulfide reductase [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
Length = 347
Score = 283 bits (724), Expect = 1e-74, Method: Composition-based stats.
Identities = 147/346 (42%), Positives = 219/346 (63%), Gaps = 10/346 (2%)
Query: 1 MKLRLSIEEFDRGLEELSKKYLILAPRTFEKRGTYSDTDVVRYAKVNNFSEMNWEDKSHF 60
M ++++ +EF ++ L++K+ + AP + G +SDTD + Y ++ + ++ W +KSH
Sbjct: 1 MAIKITPDEFSLLIQRLNQKWRVFAPSAEFRGGRFSDTDNIIYQWISGWRDLIWHEKSHM 60
Query: 61 PAKEALLPVNEVLFYFTEDEYKVAAEDTRERLVFLRACDMNAVKRIDQIYLGNGASNDFF 120
+ P+ E LFYF +D ++A D ++F RACD+NA+ R+D +YL NG ++D+
Sbjct: 61 SPNTIIAPITETLFYFDKDTIQIAETDISPIIIFARACDINAMSRLDYMYLSNGNNSDYS 120
Query: 121 YTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKADNYDAAMNVRGNEIQLEIRDEDLNIFS- 179
Y R+ +FV++ C ++F NCFCVSMGTNK D Y AAM + IRD +
Sbjct: 121 YQLLREHIRFVLIECEESFENCFCVSMGTNKTDCYSAAMRFSDEGALVSIRDPFIEAAIQ 180
Query: 180 --GREIDFDIDYVTKNEFEVDLPEKV--DFMYMQN----HKMWDEYDTRCIACGRCNYSC 231
G+E D+ +V++N V P+ V D +++ H +WD YD+RCI+CGRC C
Sbjct: 181 GLGQEADYTPSFVSENRETVVTPDSVCRDPQKIRDILTRHPLWDAYDSRCISCGRCTTGC 240
Query: 232 PTCTCFSMQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIH 291
PTCTC+S+ D+ Y EN GERRR WASC + G++++AGGH FR K G+R+R++ LHK++
Sbjct: 241 PTCTCYSVFDVAYDENPQRGERRRQWASCMMPGFSDMAGGHGFREKPGERLRYRALHKVN 300
Query: 292 DYKKRFG-ENMCVGCGRCDDMCPQYISISEAYEKVAHAMREKDNEE 336
DYK R G E+MCVGCGRCDD CPQYI S K+ A+R+ EE
Sbjct: 301 DYKARNGIEHMCVGCGRCDDRCPQYIKFSLIINKMTAAVRQALAEE 346
>gi|116247989|gb|ABJ90310.1| anaerobic sulfite reductase subunit A [uncultured prokaryote]
Length = 162
Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats.
Identities = 99/159 (62%), Positives = 131/159 (82%), Gaps = 2/159 (1%)
Query: 147 MGTNKADNYDAAMNVRGNEIQLEIRDEDLNIFSGREIDFDIDYVTKNEFEVDLPE--KVD 204
MGTNKADNY MN+ +EIQLEI+DE+LNIF G +DF+ID+V +N F+V++P+ K++
Sbjct: 1 MGTNKADNYAMGMNICEDEIQLEIKDEELNIFDGENVDFEIDFVKENLFDVNIPDVDKLN 60
Query: 205 FMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVDG 264
+ +W+EY++RCIACGRCN+ CPTC+C++MQDI YKENEN+GERRRVWA CQVDG
Sbjct: 61 LKEVATSDIWEEYNSRCIACGRCNFVCPTCSCYTMQDIFYKENENVGERRRVWAGCQVDG 120
Query: 265 YTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGENMCV 303
+T +AGGH FR G+RMRFKT+HK++D+KKRFG N+CV
Sbjct: 121 FTQMAGGHEFRKTKGERMRFKTMHKVYDFKKRFGYNICV 159
>gi|116247968|gb|ABJ90300.1| anaerobic sulfite reductase subunit A [uncultured prokaryote]
Length = 164
Score = 201 bits (510), Expect = 7e-50, Method: Composition-based stats.
Identities = 99/165 (60%), Positives = 125/165 (75%), Gaps = 6/165 (3%)
Query: 147 MGTNKADNYDAAMNVRGNEIQLEIRDEDL-NIF---SGREIDFDIDYVTKNEFEVDLPEK 202
MGTNK D Y+ + G E+ L+I+DE+ NIF S + ++ D+V NE EV++P+
Sbjct: 1 MGTNKTDEYNTYIKKTGEEVYLDIKDEEFENIFKSLSNKTLNVIPDFVEDNEIEVNIPDN 60
Query: 203 VDFMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQV 262
+D M++ MWDEY RCIACGRCN+ CPTCTCF+MQDI YK+N +GERRRVWASC V
Sbjct: 61 LDLRVMKS-TMWDEYSERCIACGRCNFVCPTCTCFTMQDIFYKDNGKVGERRRVWASCHV 119
Query: 263 DGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGEN-MCVGCG 306
DGYT++AGGHSFR GQRMR+K LHKIHDYK++FG+N MCVGCG
Sbjct: 120 DGYTDMAGGHSFRKDKGQRMRYKVLHKIHDYKEKFGDNHMCVGCG 164
>gi|116247952|gb|ABJ90292.1| anaerobic sulfite reductase subunit A [uncultured prokaryote]
Length = 165
Score = 200 bits (508), Expect = 1e-49, Method: Composition-based stats.
Identities = 92/165 (55%), Positives = 124/165 (75%), Gaps = 5/165 (3%)
Query: 147 MGTNKADNYDAAMNVRGNEIQLEIRDEDL-NIFSGREID----FDIDYVTKNEFEVDLPE 201
MGTNKA+NY+ +N+ + ++I+D L F+G +I+ + DYV +N+ +V++ +
Sbjct: 1 MGTNKAENYNLGINIDEENVYVDIKDNSLEKYFNGVQIEEKLEIEPDYVEENKIKVNISD 60
Query: 202 KVDFMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQ 261
K++ + N W+EY RCIACGRCN+ CPTCTCF+MQDI YK+N GERRRVWASCQ
Sbjct: 61 KINLAKIVNLDFWNEYSGRCIACGRCNFVCPTCTCFTMQDIFYKDNAKTGERRRVWASCQ 120
Query: 262 VDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGENMCVGCG 306
+DGYTN+AGGH FR+ GQRMRFK +HK++DYKKRFG +MCVGCG
Sbjct: 121 IDGYTNMAGGHGFRIDKGQRMRFKVMHKVNDYKKRFGYHMCVGCG 165
>gi|116247950|gb|ABJ90291.1| anaerobic sulfite reductase subunit A [uncultured prokaryote]
Length = 165
Score = 199 bits (507), Expect = 2e-49, Method: Composition-based stats.
Identities = 91/165 (55%), Positives = 124/165 (75%), Gaps = 5/165 (3%)
Query: 147 MGTNKADNYDAAMNVRGNEIQLEIRDEDL-NIFSGREID----FDIDYVTKNEFEVDLPE 201
MGTN+A+NY+ +N+ + ++I+D L F+G +I+ + DYV +N+ +V++ +
Sbjct: 1 MGTNQAENYNLGINIDEENVYVDIKDNSLEKYFTGVQIEEKLEIEPDYVEENKIKVNISD 60
Query: 202 KVDFMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQ 261
K++ + N W+EY RCIACGRCN+ CPTCTCF+MQDI YK+N GERRRVWASCQ
Sbjct: 61 KINLAKIVNLDFWNEYSGRCIACGRCNFVCPTCTCFTMQDIFYKDNAKTGERRRVWASCQ 120
Query: 262 VDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGENMCVGCG 306
+DGYTN+AGGH FR+ GQRMRFK +HK++DYKKRFG +MCVGCG
Sbjct: 121 IDGYTNMAGGHGFRIDKGQRMRFKVMHKVNDYKKRFGYHMCVGCG 165
>gi|116247985|gb|ABJ90308.1| anaerobic sulfite reductase subunit A [uncultured prokaryote]
Length = 163
Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats.
Identities = 92/164 (56%), Positives = 121/164 (73%), Gaps = 5/164 (3%)
Query: 147 MGTNKADNYDAAMNVRGNEIQLEIRDEDL----NIFSGREIDFDIDYVTKNEFEVDLPEK 202
MGTNKAD +DA + + + + +++DE+L + E+ D+V++N+ V++PE
Sbjct: 1 MGTNKADAHDAYIKLEDDIVLFDVKDEELAKLIEVEEREEVHITPDFVSENQVAVNIPEN 60
Query: 203 VDFMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQV 262
++ M N MW EY RCIACGRCN CPTCTCF+MQDI YK+N+N GERRRVWASC V
Sbjct: 61 LELKVM-NSSMWKEYSARCIACGRCNSVCPTCTCFTMQDIFYKDNKNAGERRRVWASCHV 119
Query: 263 DGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGENMCVGCG 306
DGYT +AGGHSFR+ GQRMRFK LHK++DYKK++G +MCVGCG
Sbjct: 120 DGYTGMAGGHSFRLDKGQRMRFKVLHKVYDYKKKWGYHMCVGCG 163
>gi|116247977|gb|ABJ90304.1| anaerobic sulfite reductase subunit A [uncultured prokaryote]
Length = 161
Score = 198 bits (504), Expect = 4e-49, Method: Composition-based stats.
Identities = 94/162 (58%), Positives = 123/162 (75%), Gaps = 3/162 (1%)
Query: 147 MGTNKADNYDAAMNVRGNEIQLEIRDEDL--NIFSGREIDFDIDYVTKNEFEVDLPEKVD 204
MGTNKA+++ + + + + ++I+DE+L G D +ID+V +N V +PE +
Sbjct: 1 MGTNKAEDFSMYLKYKKDTVYVKIKDEELLPCFQEGESTDIEIDFVEENNVNVSIPENL- 59
Query: 205 FMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVDG 264
+ MWDEYD RCIACGRCN+ CPTCTCF+MQDIHYK+N GERRRVWASCQVDG
Sbjct: 60 CQKVFKAAMWDEYDARCIACGRCNFVCPTCTCFTMQDIHYKDNPKNGERRRVWASCQVDG 119
Query: 265 YTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGENMCVGCG 306
YT++AGGHSFR K+G+RMRFKT+HK++D+KKRFG +MCVGCG
Sbjct: 120 YTDMAGGHSFRRKNGERMRFKTMHKVYDFKKRFGYHMCVGCG 161
>gi|116247948|gb|ABJ90290.1| anaerobic sulfite reductase subunit A [Clostridium sp. CYP5]
Length = 161
Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats.
Identities = 94/162 (58%), Positives = 122/162 (75%), Gaps = 3/162 (1%)
Query: 147 MGTNKADNYDAAMNVRGNEIQLEIRDEDL--NIFSGREIDFDIDYVTKNEFEVDLPEKVD 204
MGTNKA+++ + + + + ++I+DE+L G D +ID+V +N V +PE +
Sbjct: 1 MGTNKAEDFSMYLKYKKDTVYVKIKDEELLPCFQEGESTDIEIDFVEENNVNVSIPENL- 59
Query: 205 FMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVDG 264
+ MWDEYD RCIACGRCN+ CPTCTCF+MQDIHYK+N GERRRVWASCQVDG
Sbjct: 60 CQKVFKAAMWDEYDARCIACGRCNFVCPTCTCFTMQDIHYKDNPKNGERRRVWASCQVDG 119
Query: 265 YTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGENMCVGCG 306
YT++AGGHSFR K+G+RMRFKT+HK++D KKRFG +MCVGCG
Sbjct: 120 YTDMAGGHSFRRKNGERMRFKTMHKVYDIKKRFGYHMCVGCG 161
>gi|116247946|gb|ABJ90289.1| anaerobic sulfite reductase subunit A [Clostridium subterminale]
Length = 163
Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats.
Identities = 91/164 (55%), Positives = 124/164 (75%), Gaps = 5/164 (3%)
Query: 147 MGTNKADNYDAAMNVRGNEIQLEIRDEDLNIF----SGREIDFDIDYVTKNEFEVDLPEK 202
MGTNK DNYD + V +EI + + E +I + ++ + +YVT+N V++P++
Sbjct: 1 MGTNKTDNYDGYIKVDNDEIYFDSKCELFDILLKGENAETLNVEPEYVTENNVSVNIPKE 60
Query: 203 VDFMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQV 262
+ M++ +WDEY+ RCIACGRCN+ CPTCTCF+MQDI Y++N +GERRRVWASCQV
Sbjct: 61 ITLDVMKS-TIWDEYNQRCIACGRCNFVCPTCTCFTMQDIFYQDNSKVGERRRVWASCQV 119
Query: 263 DGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGENMCVGCG 306
DG+T++AGGHSFR K GQRMRFK LHK++DYKK++G +MCVGCG
Sbjct: 120 DGFTDMAGGHSFRQKKGQRMRFKVLHKVYDYKKKWGYHMCVGCG 163
>gi|116247970|gb|ABJ90301.1| anaerobic sulfite reductase subunit A [uncultured prokaryote]
Length = 163
Score = 194 bits (494), Expect = 6e-48, Method: Composition-based stats.
Identities = 90/164 (54%), Positives = 124/164 (75%), Gaps = 5/164 (3%)
Query: 147 MGTNKADNYDAAMNVRGNEIQLEIRDEDLNIF----SGREIDFDIDYVTKNEFEVDLPEK 202
MGTNKADNYD + V +EI + + E +I + ++ + +YVT+N V++P++
Sbjct: 1 MGTNKADNYDGYIKVDNDEIYFDSKCELFDILLKSKNAETLNVEPEYVTENNVSVNIPKE 60
Query: 203 VDFMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQV 262
+ M++ +WDEY+ RCIACGRCN+ CPTCTCF+MQDI Y++N +GERRRVW+SCQV
Sbjct: 61 ITLDVMKS-TIWDEYNQRCIACGRCNFVCPTCTCFTMQDIFYQDNSKVGERRRVWSSCQV 119
Query: 263 DGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGENMCVGCG 306
DG+T++AGGHSFR GQRMRFK LHK++DYKK++G +MCVGCG
Sbjct: 120 DGFTDMAGGHSFRQNKGQRMRFKVLHKVYDYKKKWGYHMCVGCG 163
>gi|116247954|gb|ABJ90293.1| anaerobic sulfite reductase subunit A [uncultured prokaryote]
Length = 165
Score = 194 bits (492), Expect = 9e-48, Method: Composition-based stats.
Identities = 90/164 (54%), Positives = 122/164 (74%), Gaps = 5/164 (3%)
Query: 147 MGTNKADNYDAAMNVRGNEIQLEIRDEDL-NIFSGREID----FDIDYVTKNEFEVDLPE 201
MGTNKA+N++ +N+ + ++I+D L F+G +I+ + DYV +N+ +V+ +
Sbjct: 1 MGTNKAENHNLGINIDEENVYVDIKDNSLEKYFNGVQIEEKLEIEPDYVEENKIKVNTSD 60
Query: 202 KVDFMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQ 261
K++ + N W+EY RCIACGRCN+ CPTCTCF+MQDI YK+N GERRRVWASCQ
Sbjct: 61 KINLAKIVNLDFWNEYSGRCIACGRCNFVCPTCTCFTMQDIFYKDNAKTGERRRVWASCQ 120
Query: 262 VDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGENMCVGC 305
+DGYTN+AGGH FR+ GQRMRFK +HK++DYKKRFG +MCVGC
Sbjct: 121 IDGYTNMAGGHGFRIDKGQRMRFKVMHKVNDYKKRFGYHMCVGC 164
>gi|116247975|gb|ABJ90303.1| anaerobic sulfite reductase subunit A [uncultured prokaryote]
Length = 163
Score = 193 bits (491), Expect = 1e-47, Method: Composition-based stats.
Identities = 89/164 (54%), Positives = 123/164 (75%), Gaps = 5/164 (3%)
Query: 147 MGTNKADNYDAAMNVRGNEIQLEIRDEDLNIF----SGREIDFDIDYVTKNEFEVDLPEK 202
MGTNK DNYD + V +EI + + E +I + ++ + +YVT+N V++P++
Sbjct: 1 MGTNKTDNYDGYIKVDNDEIYFDSKCELFDILLKSKNAETLNVEPEYVTENNVSVNIPKE 60
Query: 203 VDFMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQV 262
+ M++ +WDEY+ RCIACGRCN+ CPTCTCF+MQDI Y++N +GERRRVW+SCQV
Sbjct: 61 ITLDVMKS-TIWDEYNQRCIACGRCNFVCPTCTCFTMQDIFYQDNSKVGERRRVWSSCQV 119
Query: 263 DGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGENMCVGCG 306
DG+T++AGGHSFR GQRMRFK LHK++DYKK++G +MCVGCG
Sbjct: 120 DGFTDMAGGHSFRQSKGQRMRFKVLHKVYDYKKKWGYHMCVGCG 163
>gi|116247958|gb|ABJ90295.1| anaerobic sulfite reductase subunit A [uncultured prokaryote]
Length = 163
Score = 191 bits (485), Expect = 6e-47, Method: Composition-based stats.
Identities = 89/164 (54%), Positives = 123/164 (75%), Gaps = 5/164 (3%)
Query: 147 MGTNKADNYDAAMNVRGNEIQLEIRDEDLNIF----SGREIDFDIDYVTKNEFEVDLPEK 202
MGTNKADNYD + V +EI + + E +I + ++ + +YVT+N V++P++
Sbjct: 1 MGTNKADNYDGYIKVDNDEIYFDSKCELFDILLKSKNAETLNVEPEYVTENNVSVNIPKE 60
Query: 203 VDFMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQV 262
+ M++ +WDE + RCIACGRCN+ CPTCTCF+MQDI Y++N +GERRRVW+SCQV
Sbjct: 61 ITLDVMKS-TIWDECNQRCIACGRCNFVCPTCTCFTMQDIFYQDNSKVGERRRVWSSCQV 119
Query: 263 DGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGENMCVGCG 306
DG+T++AGGHSFR GQRMRFK LHK++DYKK++G +MCVGCG
Sbjct: 120 DGFTDMAGGHSFRQNKGQRMRFKVLHKVYDYKKKWGYHMCVGCG 163
>gi|116247966|gb|ABJ90299.1| anaerobic sulfite reductase subunit A [uncultured prokaryote]
Length = 165
Score = 189 bits (479), Expect = 3e-46, Method: Composition-based stats.
Identities = 88/165 (53%), Positives = 119/165 (72%), Gaps = 5/165 (3%)
Query: 147 MGTNKADNYDAAMNVRGNEIQLEIRDEDLNIFSGR-----EIDFDIDYVTKNEFEVDLPE 201
MGTNKA+NY+ +N+ + ++I+D L + ++ + + V +N+ +V++ +
Sbjct: 1 MGTNKAENYNLGINIDEENVYVDIKDNSLEKYFNEVQIEEKLKIEPESVKENKVKVNISD 60
Query: 202 KVDFMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQ 261
K++ + N W+EY RCIACGRCN+ CPTCTCF+MQDI YK+N GERRRVWASCQ
Sbjct: 61 KINLAKIVNLDFWNEYSERCIACGRCNFVCPTCTCFTMQDIFYKDNAKSGERRRVWASCQ 120
Query: 262 VDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGENMCVGCG 306
VDGYTN+AGGH FR+ GQRMR K +HKI+DYKKRFG +MCVGCG
Sbjct: 121 VDGYTNMAGGHGFRIDKGQRMRSKVMHKINDYKKRFGYHMCVGCG 165
>gi|116247983|gb|ABJ90307.1| anaerobic sulfite reductase subunit A [uncultured prokaryote]
Length = 161
Score = 186 bits (471), Expect = 2e-45, Method: Composition-based stats.
Identities = 90/162 (55%), Positives = 117/162 (72%), Gaps = 3/162 (1%)
Query: 147 MGTNKADNYDAAMNVRGNEIQLEIRDEDLNIF--SGREIDFDIDYVTKNEFEVDLPEKVD 204
MGTNKA+ YD + V+ E+ +E +DE+ + S + + ++ N+ EV +P+ +D
Sbjct: 1 MGTNKAEEYDLFVKVKDGEVFVECKDENFKAYFESEEQAEVSPQFIQANDIEVKIPKNLD 60
Query: 205 FMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVDG 264
N W EY RCIACGRCN C TC CF+MQDI YK+N+N GERRRVWASCQVDG
Sbjct: 61 GRVF-NWSGWKEYSARCIACGRCNTVCGTCACFTMQDIFYKDNKNAGERRRVWASCQVDG 119
Query: 265 YTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGENMCVGCG 306
YT++AGGHSFR K+G+RMRFKT+HK++D KKRFG +MCVGCG
Sbjct: 120 YTDMAGGHSFRRKNGERMRFKTMHKVYDLKKRFGYHMCVGCG 161
>gi|116247987|gb|ABJ90309.1| anaerobic sulfite reductase subunit A [uncultured prokaryote]
Length = 161
Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats.
Identities = 87/162 (53%), Positives = 115/162 (70%), Gaps = 3/162 (1%)
Query: 147 MGTNKADNYDAAMNVRGNEIQLEIRDEDLNIFSGREIDFDID--YVTKNEFEVDLPEKVD 204
MGTNKA+ YD + V+ E+ +E +DE+ + E F++ ++ N+ EV +P+ +D
Sbjct: 1 MGTNKAEEYDLFVKVKDGEVHVECKDENFKSYFEAEQQFEVSPKFIEANDMEVKIPKNLD 60
Query: 205 FMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVDG 264
N W EY RCIACGRCN C TC CF+MQDI YK+N+N+GERRRVWASCQVDG
Sbjct: 61 GRVF-NWSGWKEYSARCIACGRCNTVCGTCACFTMQDIFYKDNKNVGERRRVWASCQVDG 119
Query: 265 YTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGENMCVGCG 306
+T++AGGHSFR G RMRFK +HK++D+ KRFG +MCVGCG
Sbjct: 120 FTDMAGGHSFRKDKGDRMRFKVMHKVYDFNKRFGYHMCVGCG 161
>gi|116247964|gb|ABJ90298.1| anaerobic sulfite reductase subunit A [uncultured prokaryote]
Length = 161
Score = 178 bits (451), Expect = 5e-43, Method: Composition-based stats.
Identities = 85/162 (52%), Positives = 119/162 (73%), Gaps = 3/162 (1%)
Query: 147 MGTNKADNYDAAMNVRGNEIQLEIRDEDLNIF--SGREIDFDIDYVTKNEFEVDLPEKVD 204
MGTNK + Y + + +++ +E +DE+ N + S + + + +V N+ EV +PE +D
Sbjct: 1 MGTNKTEQYSLFVKYKDDKVFVECKDEEFNGYFNSMEQCNVEPKFVESNDVEVKIPENID 60
Query: 205 FMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVDG 264
+N +MW EY RCIACGRCN C TCTCF+MQD+ YK+N N+GERRRVWASCQVDG
Sbjct: 61 QGIFKN-EMWKEYSQRCIACGRCNVVCGTCTCFTMQDVFYKDNRNVGERRRVWASCQVDG 119
Query: 265 YTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGENMCVGCG 306
+T++AGG +FR + G+RMRFK +HK++D+KKRFG +MCVGCG
Sbjct: 120 FTDVAGGGNFRKEKGERMRFKVMHKVYDFKKRFGYHMCVGCG 161
>gi|116247960|gb|ABJ90296.1| anaerobic sulfite reductase subunit A [uncultured prokaryote]
Length = 163
Score = 177 bits (450), Expect = 7e-43, Method: Composition-based stats.
Identities = 86/164 (52%), Positives = 119/164 (72%), Gaps = 5/164 (3%)
Query: 147 MGTNKADNYDAAMNVRGNEIQLEIRDEDLN-IFSGREID---FDIDYVTKNEFEVDLPEK 202
MGTNK D Y ++ ++ L+ +D+ I + I+ +YVT+ + V++P+
Sbjct: 1 MGTNKTDEYHLSVEPVEDDYLLDCKDQKWEEIIKNQAIENLTVSPNYVTQTKTRVNIPDN 60
Query: 203 VDFMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQV 262
+D +++ K+WDEYD+RCI CGRCN+ CPTCTCF+MQDI Y +N +GERRRVWASC V
Sbjct: 61 LDNRIIKS-KIWDEYDSRCINCGRCNFVCPTCTCFTMQDIFYTDNGKVGERRRVWASCMV 119
Query: 263 DGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGENMCVGCG 306
DGYT++AGG S+R K+GQRMRFK LHK+ D+KKR+G +MCVGCG
Sbjct: 120 DGYTDVAGGGSYRKKNGQRMRFKVLHKVMDHKKRYGYHMCVGCG 163
>gi|116247979|gb|ABJ90305.1| anaerobic sulfite reductase subunit A [uncultured prokaryote]
Length = 161
Score = 177 bits (450), Expect = 7e-43, Method: Composition-based stats.
Identities = 85/162 (52%), Positives = 118/162 (72%), Gaps = 3/162 (1%)
Query: 147 MGTNKADNYDAAMNVRGNEIQLEIRDEDLNIF--SGREIDFDIDYVTKNEFEVDLPEKVD 204
MGTNKA+ Y + + +++ +E +DE+ N + S + + + +V N+ EV +PE +D
Sbjct: 1 MGTNKAEQYSLFVKYKDDKVFVECKDEEFNGYFNSMEQCNVEPKFVESNDVEVKIPENID 60
Query: 205 FMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVDG 264
+N +MW EY RCIACGRCN C TCTCF+MQD+ YK+N N+GERRRVWA CQVDG
Sbjct: 61 QGIFKN-EMWKEYSQRCIACGRCNVVCGTCTCFTMQDVFYKDNRNVGERRRVWAPCQVDG 119
Query: 265 YTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGENMCVGCG 306
T++AGG +FR + G+RMRFK +HK++D+KKRFG +MCVGCG
Sbjct: 120 LTDVAGGGNFRKEKGERMRFKVMHKVYDFKKRFGYHMCVGCG 161
>gi|116247962|gb|ABJ90297.1| anaerobic sulfite reductase subunit A [uncultured prokaryote]
Length = 161
Score = 176 bits (445), Expect = 3e-42, Method: Composition-based stats.
Identities = 83/162 (51%), Positives = 119/162 (73%), Gaps = 3/162 (1%)
Query: 147 MGTNKADNYDAAMNVRGNEIQLEIRDEDLNIF--SGREIDFDIDYVTKNEFEVDLPEKVD 204
MGTNK + Y + + +++ +E +DE+ N + S + + + +V N+ EV +PE +D
Sbjct: 1 MGTNKTEQYSLFVKYKDDKVFVECKDEEFNGYFNSMEQCNVEPKFVESNDVEVKIPENID 60
Query: 205 FMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVDG 264
+N +MW EY RCIACGRCN C TCTCF+MQD+ YK+N N+GERRRVWASCQVDG
Sbjct: 61 QGIFKN-EMWKEYSQRCIACGRCNVVCGTCTCFTMQDVFYKDNRNVGERRRVWASCQVDG 119
Query: 265 YTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGENMCVGCG 306
+T++AGG +FR + G+RMRFK +HK++DYK+++G +MCVGCG
Sbjct: 120 FTDVAGGGNFRKEKGERMRFKVMHKVYDYKRKWGYHMCVGCG 161
>gi|116247956|gb|ABJ90294.1| anaerobic sulfite reductase subunit A [uncultured prokaryote]
Length = 161
Score = 171 bits (432), Expect = 9e-41, Method: Composition-based stats.
Identities = 78/162 (48%), Positives = 118/162 (72%), Gaps = 3/162 (1%)
Query: 147 MGTNKADNYDAAMNVRGNEIQLEIRDEDLNIFSGREIDFDI--DYVTKNEFEVDLPEKVD 204
MGTN+A++Y + +G+ + ++ +DE+L E ++ ++ +N EV +PE+++
Sbjct: 1 MGTNQAEDYSLFVKRQGDMVSVQCKDEELTYLFNEEAKEEVVPKFIEENSIEVKIPEELN 60
Query: 205 FMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVDG 264
++ ++W EY +RCIACG+CN C TC CF+MQDI YK+N N+GERRRVWASCQ++G
Sbjct: 61 NGIFKS-EVWKEYSSRCIACGKCNTVCGTCACFTMQDIFYKDNSNVGERRRVWASCQIEG 119
Query: 265 YTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGENMCVGCG 306
+T++AGGH FR G+RMRFK +HK++D+KKRFG +MCVG G
Sbjct: 120 FTSMAGGHGFRKDKGERMRFKIMHKVYDFKKRFGYHMCVGXG 161
>gi|116247972|gb|ABJ90302.1| anaerobic sulfite reductase subunit A [uncultured prokaryote]
Length = 166
Score = 164 bits (416), Expect = 7e-39, Method: Composition-based stats.
Identities = 83/166 (50%), Positives = 112/166 (67%), Gaps = 6/166 (3%)
Query: 147 MGTNKADNYDAAMNVRGNEIQLEIRDEDLNIF--SGREIDFDIDYVTKNEFEVDLPEKVD 204
MGTNKADNY A+ + I + DE+ + ++ +F ++++ +N+ +V LPE D
Sbjct: 1 MGTNKADNYSLAVRFLEDAILFNVNDEEFKDYFKDEKQEEFTLEFIKENKAKVKLPEIKD 60
Query: 205 ---FMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQ 261
++ H MW+EY+ RCI CG C +C TCTCF+ +DI Y EN N+GERRRV ASC
Sbjct: 61 KEVIEKLKKHPMWEEYNKRCIGCGSCTLACSTCTCFTTKDITYNENANVGERRRVQASCH 120
Query: 262 VDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGEN-MCVGCG 306
VDG+ +AGGH FR G RMR+K LHKIHDYK++FG+N MCVGCG
Sbjct: 121 VDGFDEMAGGHKFRNTLGDRMRYKVLHKIHDYKEKFGDNHMCVGCG 166
>gi|114565956|ref|YP_753110.1| 4Fe-4S ferredoxin, iron-sulfur binding [Syntrophomonas wolfei
subsp. wolfei str. Goettingen]
gi|114336891|gb|ABI67739.1| 4Fe-4S ferredoxin, iron-sulfur binding [Syntrophomonas wolfei
subsp. wolfei str. Goettingen]
Length = 339
Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats.
Identities = 99/297 (33%), Positives = 149/297 (50%), Gaps = 37/297 (12%)
Query: 59 HFPAKEALLPVNEVLFYFTEDEYKVAA----EDTRERLVF-LRACDMNAVKRIDQIYLGN 113
+ P K+ LLP E ++ F ++E VA E+++ R++F +RACD+ A+ +DQ +L
Sbjct: 55 YLPPKQVLLPQTEKMYSFRQEEGGVAISEVYEESQARVIFGIRACDLQAINCLDQAFLTR 114
Query: 114 GASNDFFYTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKAD--NYDAAMNVRGNEIQL-EI 170
G +++ Y R T V C K NCFC SMG + + DA + G+E + E
Sbjct: 115 GFVDEY-YKARRDNTTIVASACYKPGANCFCSSMGVDPLEPAGADAIIRDTGSEFFIWEA 173
Query: 171 RDEDLNIFSGREIDFDI-DYVTKNEF----------EVDL---PEKVDFMYMQNHKMWDE 216
R +G E+ + +Y+ + E +VD+ EK+ ++ + +W+E
Sbjct: 174 RTP-----AGEELSRQLAEYLEEKELPLPQSQAFERQVDMEGVAEKLSQVF--SSPLWEE 226
Query: 217 YDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRV 276
C CG C Y CP+C CF DI K G R R W SC YT +AGGH+ R
Sbjct: 227 LSDACQTCGICTYLCPSCYCF---DIQVKNQGEAGYRFRCWDSCMYGEYTMMAGGHNPRA 283
Query: 277 KHGQRMRFKTLHKIHDYKKRFGENMCVGCGRCDDMCPQYISISEAYEKVAHAMREKD 333
+R R + LHK+ + +R+G +C GCGRC CP I IS K+ A +E D
Sbjct: 284 SATERFRNRFLHKLEFFNERYGMPLCTGCGRCIIACPAGIDIS----KIITAAKEAD 336
>gi|116247981|gb|ABJ90306.1| anaerobic sulfite reductase subunit A [uncultured prokaryote]
Length = 167
Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats.
Identities = 76/168 (45%), Positives = 109/168 (64%), Gaps = 9/168 (5%)
Query: 147 MGTNKADNYDAAMNVRGNEIQLEIRDEDLNIFSGREI--DFDIDYVTKNEFEVDLPEKVD 204
MGTNKADNY AA+ N + +E++D + + EI DF ++V N+ +V LP K+D
Sbjct: 1 MGTNKADNYSAAVRFEQNGLLVEVKDNEFKKYFAGEISRDFTPEFVQSNQKKVKLP-KID 59
Query: 205 ----FMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASC 260
+ + + W +++ +C++CG CN C TC+CF +DI Y E GERRRVW+SC
Sbjct: 60 STDALKKVYSLEFWKDFNDKCLSCGACNTVCMTCSCFDTRDIIYNETSFNGERRRVWSSC 119
Query: 261 QVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFG--ENMCVGCG 306
++ +T +AGGH R G+RMRFKTLH+++DY RFG E+MCVGCG
Sbjct: 120 MLEDFTIMAGGHGVRNTAGERMRFKTLHRVYDYNSRFGGDEHMCVGCG 167
>gi|83589666|ref|YP_429675.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica ATCC
39073]
gi|83572580|gb|ABC19132.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica ATCC
39073]
Length = 333
Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats.
Identities = 84/288 (29%), Positives = 135/288 (46%), Gaps = 35/288 (12%)
Query: 61 PAKEALLPVNEVLFYFTEDEYKVAAE-----DTRERLVFLRACDMNAVKRIDQIYLGNGA 115
P K+ P E ++ + + E + + LV +R+CD ++ +D ++L G
Sbjct: 53 PPKDLFFPRTETMYRYQVNGPAATLETMPPLEEKRVLVGIRSCDARSLLIMDDVFLTRGY 112
Query: 116 SNDFFYTKTRKKTKFVVVGCSKTFRNCFCVSMGTN--KADNYDAAM-NVRGNEIQLEIRD 172
++F Y + R+ T+ V + C++ CFC + G + +A+ D M G + I D
Sbjct: 113 VDEF-YRQRRENTRIVALACNEAQPYCFCTAFGIDPGRAEGADVQMWPGEGGYLLEAITD 171
Query: 173 EDLNIFSGREI------------DFDIDYVTKNEFEVD---LPEKVDFMYMQNHKMWDEY 217
+G+E+ D +VD + EK+ M+ H W
Sbjct: 172 ------AGKELLKQAGDLLEEAGDVQPPAAAAPGLQVDASGVTEKLQRMF--EHPYWTAV 223
Query: 218 DTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVK 277
+C+ CG C Y CPTC CF DI + N G + R W SC YT +AGGH+ R
Sbjct: 224 SRKCLGCGACTYLCPTCHCF---DIQGENQGNSGYKFRCWDSCMFSEYTRMAGGHNPRPS 280
Query: 278 HGQRMRFKTLHKIHDYKKRFGENMCVGCGRCDDMCPQYISISEAYEKV 325
+R+R + LHK+ + +R+G+ CVGCGRC D CP + I+ +V
Sbjct: 281 KKERLRNRFLHKLQYFPERYGKFACVGCGRCLDRCPVNVDITRVIREV 328
>gi|145620275|ref|ZP_01776310.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Geobacter
bemidjiensis Bem]
gi|144943395|gb|EDJ78485.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Geobacter
bemidjiensis Bem]
Length = 325
Score = 131 bits (330), Expect = 6e-29, Method: Composition-based stats.
Identities = 78/300 (26%), Positives = 143/300 (47%), Gaps = 20/300 (6%)
Query: 36 SDTDVVRYAKVNNFSEMNWE-DKSHFPAKEALLPVNEVLFYFTEDEYKVAAEDTRERLVF 94
SD V+ +A + + S++ + ++ P K+ LLP E + ++ + Y+ A E ++F
Sbjct: 30 SDQGVLSFAPLTSASDLQLDYSRTQIPPKKYLLPFREEILHYQKGAYRQAVPYGSETVLF 89
Query: 95 -LRACDMNAVKRIDQIYLGNGASNDFFYTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKAD 153
+ CD++A+ +D+++L + + D Y R V + C + FC G ++
Sbjct: 90 GVHPCDLDAIAYLDRVFLAD--TPDSCYATRRANLTLVGLSCRP---DDFCFCSGPRESA 144
Query: 154 NYDAAMNVRGNEIQLEIRDEDLNIFSGREIDFDIDYVTKNEFEVD-------LPEKVDFM 206
D + G+ L + D ++ T+ E E LP+
Sbjct: 145 ACDLFLQAGGDGFSLTTHSAKGEAITAAAADLLVE--TEKELEPPPCGSCNVLPQDPQLR 202
Query: 207 YMQNHKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVDGYT 266
+ +H +W+++ C++CG C+ CPTC CF +++ Y GER R W +C +
Sbjct: 203 F-SDHPLWEKFAETCVSCGACSVCCPTCYCFDLRE--YPSLSGGGERVREWDNCLFVTHG 259
Query: 267 NIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGENMCVGCGRCDDMCPQYISISEAYEKVA 326
+AGG +FR +R+R++ LHK + G CVGCGRC + CP I + E ++ ++
Sbjct: 260 EVAGG-NFRATRLERLRYRFLHKYCGFTPLTGITSCVGCGRCKEFCPVGIDLRELFQDLS 318
>gi|118745760|ref|ZP_01593726.1| 4Fe-4S ferredoxin, iron-sulfur binding [Geobacter lovleyi SZ]
gi|118681320|gb|EAV87752.1| 4Fe-4S ferredoxin, iron-sulfur binding [Geobacter lovleyi SZ]
Length = 334
Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats.
Identities = 84/303 (27%), Positives = 141/303 (46%), Gaps = 23/303 (7%)
Query: 41 VRYAKVNNFSEMNWEDKSHFPAKEALLPVNEVLFYFTEDEYKVAAED-TRER-----LVF 94
V Y + + S++ ++ KEA PV E L + ++ +V D T ER L+
Sbjct: 34 VLYEPLASASDLVIDELPRRSVKEAFFPVCEDLLEYRKEGQQVQLTDVTPERFPETVLIG 93
Query: 95 LRACDMNAVKRIDQIYLGNGASNDFFYTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKADN 154
+R CD AV +D ++ + D F+ + R +T + + C+ CFC ++G + D
Sbjct: 94 VRPCDAAAVPVLDAVFSWD--YKDQFFLERRARTTIIGLACTTADDACFCTAVGLSPHDP 151
Query: 155 YDAAMNVR---GNEIQLEIRDEDLNIF--SGREIDFDIDYVTKNEFEVDLPEKVDF---- 205
A + + G +E + + F + ++ + D E + D
Sbjct: 152 KGADLMLTPLVGGGFLVESQSDKGEAFLETWKDRFAERDGTQPQELATPATQPFDLKKIK 211
Query: 206 MYMQNH---KMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQV 262
++ H WD TRC+ CG C + CP C CF + D + +E G+RR+ W +C
Sbjct: 212 AWLDKHFEDAAWDSIATRCVGCGACAFVCPACHCFDIVD---EGSEKAGKRRKFWDACGF 268
Query: 263 DGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGENMCVGCGRCDDMCPQYISISEAY 322
+TN A GH+ R +R R + +HK Y +FG+ +C GCGRC +CP I I+
Sbjct: 269 SKFTNHASGHNPRDLQPKRYRNRIMHKFKYYDDKFGQTLCTGCGRCIRICPVGIDIAGVL 328
Query: 323 EKV 325
E++
Sbjct: 329 EEI 331
>gi|117924189|ref|YP_864806.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
[Magnetococcus sp. MC-1]
gi|117607945|gb|ABK43400.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
[Magnetococcus sp. MC-1]
Length = 349
Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats.
Identities = 88/292 (30%), Positives = 131/292 (44%), Gaps = 26/292 (8%)
Query: 57 KSHFPAKEALLPVNEVLFYFTEDEYKVAAEDTRERLVF-LRACDMNAVKRIDQIYLGNGA 115
++ P K+ P EVL+ F + Y D ++F L CD++ V +D + +
Sbjct: 54 RTALPPKKYFFPPEEVLYRFDAEGYTPQQPDLPPMILFGLHPCDLHGVDVVDHFFARD-- 111
Query: 116 SNDFFYTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKADN-YDAAMNVRGNEIQLEIRDE- 173
D Y R + + +GC +CFC S GT D YD + G + +R E
Sbjct: 112 YPDRTYQNRRSQAWLIGLGCMPD-AHCFCQSQGTEHVDGLYDMFLWDLGPRFYVMVRTEA 170
Query: 174 --DL-----NIF-----SGREIDFDIDYVTKNEFEV-----DLPEKVDFMYMQNHKMWDE 216
D+ +F S R+ + ++ F++ DLP+ ++ Q+ +W E
Sbjct: 171 GHDMLHMARALFKPVTDSDRQSYLALLKKRQSAFQLSMPVADLPQVLEVK--QDCAVWGE 228
Query: 217 YDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRV 276
C CG C+ CPTCTC+ M D + N G R R W+SC + AG H FR
Sbjct: 229 IAQTCFTCGACSMVCPTCTCYDMLD-RLELNGECGTRCRTWSSCLFRDFDRGAGDHHFRR 287
Query: 277 KHGQRMRFKTLHKIHDYKKRFGENMCVGCGRCDDMCPQYISISEAYEKVAHA 328
G R++ + HK H Y FG+ CVGCGRC CP I + + KV A
Sbjct: 288 DRGDRVKNRYYHKEHGYVNGFGKPSCVGCGRCITSCPAGIDVVSVFTKVRRA 339
>gi|78224620|ref|YP_386367.1| Heterodisulfide reductase, iron-sulfur binding subunit, putative
[Geobacter metallireducens GS-15]
gi|78195875|gb|ABB33642.1| Heterodisulfide reductase, iron-sulfur binding subunit, putative
[Geobacter metallireducens GS-15]
Length = 342
Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats.
Identities = 83/295 (28%), Positives = 128/295 (43%), Gaps = 22/295 (7%)
Query: 43 YAKVNNFSEMNWEDKSHFPAKEALLPVNEVLFYFTEDEYKVAAEDT------RERLVFLR 96
Y + E+N + AKE P+ E + + D V D LV R
Sbjct: 36 YEPLATGEELNLGELPRRSAKETFFPLCETILTYERDREGVRVTDVDPGAIPETVLVAAR 95
Query: 97 ACDMNAVKRIDQIYLGNGASNDFFYTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKADNYD 156
CD+ A +D ++ + D FY R KT + + C++ CFC ++G + D
Sbjct: 96 PCDVAAAPVLDSVF--SWDYQDEFYLSRRGKTTIIGLACARADDACFCTAVGLSTNDTKG 153
Query: 157 AAM---NVRGNEIQLE-IRDEDLNIFSGREIDFDIDYVTKNEFEVDLPEKVDF----MYM 208
+ + + G + + I D+ + + + F T K+D ++
Sbjct: 154 SDLFLTTLTGGGYRCDVITDKGMALLAAHGGLFAEGDGTPAPLAEPALGKLDLEKIKQWL 213
Query: 209 QNH---KMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVDGY 265
NH +W+E RC CG C + CP C CF DI+ + E G RR+ W +C +
Sbjct: 214 DNHFEDPLWEEIAERCAGCGACAFLCPACHCF---DINDEGGEKKGARRKSWDACGFGKF 270
Query: 266 TNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGENMCVGCGRCDDMCPQYISISE 320
TN A GH+ R QR R + +HK Y +F + +C GCGRC CP I I+E
Sbjct: 271 TNHASGHNPRDVQPQRYRNRIMHKFKYYVDKFDQRLCTGCGRCIRACPVGIDIAE 325
>gi|78043358|ref|YP_359780.1| putative anaerobic sulfite reductase, A subunit [Carboxydothermus
hydrogenoformans Z-2901]
gi|77995473|gb|ABB14372.1| putative anaerobic sulfite reductase, A subunit [Carboxydothermus
hydrogenoformans Z-2901]
Length = 342
Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats.
Identities = 81/284 (28%), Positives = 132/284 (46%), Gaps = 27/284 (9%)
Query: 58 SHFPAKEALLPVNEVLFYFTED-----EYKVAAEDTRERLVF-LRACDMNAVKRIDQIYL 111
+ P K+ P E +F E + + T E+++F + +CD+ ++ +D ++
Sbjct: 52 TRMPPKDLFFPQTEKMFRIKNKNNVAIELESPEKITDEQVLFGVHSCDLKSILALDPVF- 110
Query: 112 GNGASNDFFYTKTRKKTKFVVVGCSKTFRNCFCVSMGTN--KADNYDAAMNVRGNEIQLE 169
D +Y + R KT + + C+K CFC + G N AD D + G++ +E
Sbjct: 111 -TTCFPDRYYQERRDKTYVIGLSCTKALPTCFCTAYGINPTDADGADVHLTEVGDKYLVE 169
Query: 170 IRDEDLNIFSGREIDFDIDYVTKNEFE-VDLPEKVD----FMYMQNHK----------MW 214
+ E + T E E L EKV F+ + K +W
Sbjct: 170 VVTERGERLVSAIPGIVFEDTTNLEAEKAKLTEKVKGEIKFIDLTGVKEVLDENFELPLW 229
Query: 215 DEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSF 274
+++ +C+ CG C Y CPTC CF + D + + +GER R W SC +T +AGGH+
Sbjct: 230 EKWAQKCLGCGICTYVCPTCHCFDIND--FNRGDGVGERFRCWDSCMFSDFTRMAGGHNP 287
Query: 275 RVKHGQRMRFKTLHKIHDYKKRFGENMCVGCGRCDDMCPQYISI 318
R +R+R + +HK+ + R+ CVGCGRC CP+ I I
Sbjct: 288 RPTKKERVRNRFMHKLKYHLDRYSIVGCVGCGRCVQRCPENIDI 331
>gi|148262229|ref|YP_001228935.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Geobacter
uraniumreducens Rf4]
gi|148265607|ref|YP_001232313.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Geobacter
uraniumreducens Rf4]
gi|146395729|gb|ABQ24362.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Geobacter
uraniumreducens Rf4]
gi|146399107|gb|ABQ27740.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Geobacter
uraniumreducens Rf4]
Length = 334
Score = 124 bits (311), Expect = 9e-27, Method: Composition-based stats.
Identities = 79/283 (27%), Positives = 125/283 (44%), Gaps = 25/283 (8%)
Query: 62 AKEALLPVNEVLFYFTEDEYKVAAEDT------RERLVFLRACDMNAVKRIDQIYLGNGA 115
AKE P+ E + F +D+ V D L+ R CD A +D ++ +
Sbjct: 55 AKETFFPLCETILTFEKDKGGVRVNDVDPASFPETVLLCARPCDAAAPSILDAVFSWD-- 112
Query: 116 SNDFFYTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKADNYDAAMNVR----GNEIQLEIR 171
ND FY + R+KT + + C+ CFC ++G + AD + + + G +
Sbjct: 113 YNDEFYLERRRKTTIIGLACTTADDACFCTAVGLSPADTRGSDLFLTPLEGGGYAAQAVT 172
Query: 172 DEDLNIFSGREIDFDIDYVTKNEFEVDLP--EKVDFMYMQN-------HKMWDEYDTRCI 222
D+ + R F D + P E +D +++ + +W E RC
Sbjct: 173 DKGKELLEKRA-QFFSDAGSAKPLPPAEPAGESLDLEKIKSWLDNNFENPLWTEIADRCA 231
Query: 223 ACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRM 282
CG C + CP C CF + D + E G RR+ W +C +TN A GH+ R +R
Sbjct: 232 GCGACAFLCPACHCFDIVD---EGTEAKGARRKSWDACGFAKFTNHASGHNPRDMQNKRY 288
Query: 283 RFKTLHKIHDYKKRFGENMCVGCGRCDDMCPQYISISEAYEKV 325
R + +HK Y +FG+ +C GCGRC CP I I +++
Sbjct: 289 RNRIMHKFKYYGDKFGQTLCTGCGRCIRACPVGIDIKAVLDEI 331
>gi|57642007|ref|YP_184485.1| cytosolic NiFe-hydrogenase, beta subunit [Thermococcus kodakarensis
KOD1]
gi|21327885|dbj|BAC00528.1| sulfhydrogenase beta subunit [Thermococcus kodakaraensis]
gi|57160331|dbj|BAD86261.1| cytosolic NiFe-hydrogenase, beta subunit [Thermococcus kodakarensis
KOD1]
Length = 367
Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats.
Identities = 103/330 (31%), Positives = 154/330 (46%), Gaps = 43/330 (13%)
Query: 14 LEELSKKYLILAP-RTFEKRGTYSDTDVVRYAKVNNFSEMNWEDKSHFPAKEALLPVNEV 72
LE L + + AP + EK + + D VR + N +++ P K+ E
Sbjct: 15 LERLKEWGKLYAPVKISEKFYDFREIDDVRKVEFN-------YNRTIMPPKKFFFLPREK 67
Query: 73 LFYF--TEDEYKVAAEDTRERLVF-LRACDMNAVKRIDQIYLGNGASNDFFYTKTRKKTK 129
LF F + EY+ ED ++F L ACD++ +K +D +YL D +Y R+K
Sbjct: 68 LFEFDLSRPEYRETIEDVEPFVIFGLHACDIHGLKILDTVYLDELP--DKYYKARREKGI 125
Query: 130 FVVVGCSKTFRNCFCVSMGTNKADN-YDAAMN-------VR-GNEIQLEIRDEDLNIFSG 180
+ + C CFC T+ AD+ +D ++ VR G+ I D+++ +F
Sbjct: 126 IIGISCMPD-EYCFCNLRETDFADDGFDLFLHELPDGWLVRVGSPTGHRIVDKNMELFEE 184
Query: 181 REIDFDIDYVTKNEFEVDLPEKVDFMYMQN-------------HKMWDEYDTRCIACGRC 227
+ D EFE + F Y ++ H MW+E C+ACG C
Sbjct: 185 VTTE---DICNFREFENKRSQA--FKYHEDWSNLRYLLELEMEHPMWEEQADLCLACGIC 239
Query: 228 NYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTL 287
N +CPTC C+ +QDI + N G R R W SCQ + +AGGH+FR R R + L
Sbjct: 240 NTTCPTCRCYEVQDI-VNLDGNTGYRERRWDSCQFRSHGLVAGGHNFRPTKKDRFRNRYL 298
Query: 288 HKIHDYKKRFGENMCVGCGRCDDMCPQYIS 317
K + Y ++ G + CVGCGRC CP IS
Sbjct: 299 CK-NSYNEKLGLSYCVGCGRCTYFCPAGIS 327
>gi|67917633|ref|ZP_00511238.1| 4Fe-4S ferredoxin, iron-sulfur binding [Chlorobium limicola DSM
245]
gi|67784662|gb|EAM44036.1| 4Fe-4S ferredoxin, iron-sulfur binding [Chlorobium limicola DSM
245]
Length = 337
Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 86/321 (26%), Positives = 145/321 (45%), Gaps = 34/321 (10%)
Query: 29 FEKRGTYSDTDVVRYAKVNNFSEMNWE----DKSHFPAKEALLPVNEVLFYFTEDEYKVA 84
F+ G ++ +YA V+ E++ + D++ K+ P E +F + + K+
Sbjct: 22 FDVVGPVRKNNISQYATVDRTGELDLDIILPDRT---LKDLFFPQTEPMFSYRISKQKID 78
Query: 85 AED----TRERLVF-LRACDMNAVKRIDQIYLGNGASNDFFYTKTRKKTKFVVVGCSKTF 139
E+ R+R++F RACD +A+ D ++ D ++ K R +T V + C+
Sbjct: 79 TEEYLPPGRQRIIFGARACDASAMAIDDPLF--GWDYQDTYWFKRRNETVIVTIACTAAD 136
Query: 140 RNCFCVSMGTNKADNYDAAMNVR------GNEIQLEIRDEDLNIFSGREIDFDIDYVTKN 193
C C S+ + + +R G +++ E+ D FS E + + +
Sbjct: 137 EFCMCTSLKLAPDSTLGSDILLRPLGDNSGWQVE-ELTDRGREAFSRIEALLE-ESPAQT 194
Query: 194 EFEVDLPEKVDF----MYMQNHK-----MWDEYDTRCIACGRCNYSCPTCTCFSMQDIHY 244
D+P K D ++QN + W E RCI CG C + CPTC CF QD
Sbjct: 195 AALADVPIKFDLDVCREWLQNPENFESHFWKEISMRCIGCGTCTFLCPTCHCFDFQD--- 251
Query: 245 KENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGENMCVG 304
+ + G RR+ W SC +T GH+ R R R + +HK + + +F N C G
Sbjct: 252 EGDTYTGIRRKNWDSCSFALFTMHTSGHNPRSTQSARWRQRIMHKFNYFPGKFNLNSCSG 311
Query: 305 CGRCDDMCPQYISISEAYEKV 325
CGRC CP + I+E +++
Sbjct: 312 CGRCTRECPVDMGITETLQEI 332
>gi|145619066|ref|ZP_01775119.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Geobacter
bemidjiensis Bem]
gi|144944559|gb|EDJ79631.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Geobacter
bemidjiensis Bem]
Length = 336
Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 83/301 (27%), Positives = 137/301 (45%), Gaps = 27/301 (8%)
Query: 40 VVRYAKVNNFSEMNWEDKSHFPAKEALLPVNEVLFYFTEDEYKVAAEDT-RER-----LV 93
VV Y + SE+ + AKE P+ E + + + K+ D R R L+
Sbjct: 33 VVLYQPLAAGSELTLDSLPRRSAKELFFPICEKILSYQRQDGKMQVTDVDRSRFPETVLI 92
Query: 94 FLRACDMNAVKRIDQIYLGNGASNDFFYTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKAD 153
CD + +D ++ + ND FY + R+K+ V + C+K CFC ++G A
Sbjct: 93 GAPPCDAASPAILDAVF--SWDYNDEFYLERRRKSTIVGIACTKGDDACFCTAVGL--AP 148
Query: 154 NYDAAMNV------RGNEIQLEIRDEDLNIFSGREIDF-DIDYVTKNEFEVDLPEKVDFM 206
N +A ++ G+ + ++ + F + V F EK+D +
Sbjct: 149 NAEAGSDLFLTPLKDGSYACKAVTEKGKALVDAHAGLFGEAASVDAAPFAEQGTEKLDLV 208
Query: 207 ----YMQNH---KMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWAS 259
+++ H +W++ C+ CG C + CP C CF DI+ + + G RR+ W +
Sbjct: 209 KIKKWLEGHFEDPLWEKISDICVGCGSCAFICPACHCF---DINDEGSTEQGSRRKHWDA 265
Query: 260 CQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGENMCVGCGRCDDMCPQYISIS 319
C +TN A GH+ R +R R + +HK Y +FG+ +C GCGRC CP I I+
Sbjct: 266 CGFSKFTNHASGHNPRDVQNKRYRNRIMHKFKYYDDKFGKTLCTGCGRCVRACPVGIDIA 325
Query: 320 E 320
E
Sbjct: 326 E 326
>gi|134298018|ref|YP_001111514.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
[Desulfotomaculum reducens MI-1]
gi|134298025|ref|YP_001111521.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
[Desulfotomaculum reducens MI-1]
gi|134050718|gb|ABO48689.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
[Desulfotomaculum reducens MI-1]
gi|134050725|gb|ABO48696.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
[Desulfotomaculum reducens MI-1]
Length = 334
Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 95/338 (28%), Positives = 150/338 (44%), Gaps = 45/338 (13%)
Query: 14 LEELSKKYLILAPRTFEKRGTYSDTDVVRYAKVNNFSEMNWED-KSHFPAKEALLPVNEV 72
L++L+ +Y ++AP EK G +V++A + E + + P KE L P +E
Sbjct: 12 LDKLANEYRVIAP--VEKEG------LVQFAAIQKGEEAKLDYMNAKKPGKEILFPQSEE 63
Query: 73 LFYFTEDEYKVAAEDT---RERLVF-LRACDMNAVKRIDQIYLGNGASNDFFYTKTRKKT 128
L+ +T D V +D + +VF +R CD+ ++ +D ++ N D +Y R T
Sbjct: 64 LYSYTVDAEGVRMQDNVDPKATIVFGMRPCDVKSMVLLDNVF-KNDQYEDVYYLTRRANT 122
Query: 129 KFVVVGCSKTFRNCFCVSM--GTNKADNYDAAMNVRGNEIQLEIRDEDLNIFSGREIDFD 186
V +GC++ CFC SM G + D + G +E E G+E+
Sbjct: 123 LIVGLGCNEPSATCFCSSMSCGPFAKEGSDIFLTDIGEAYVVEGISE-----KGKELLAK 177
Query: 187 IDYV----------------TKNEFEVD---LPEKVDFMYMQNHKMWDEYDTRCIACGRC 227
+ TK + V+ L EK+ M+ H WD +C+ CG C
Sbjct: 178 LGLAEASAEAKGQAAKLQEETKADGSVNIEGLAEKLGGMF--EHPYWDSLYEKCLGCGAC 235
Query: 228 NYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTL 287
Y CPTC CF + D + + G R R W +C +T GH+ R R R + +
Sbjct: 236 TYLCPTCHCFDIAD---EATDCNGCRVRNWDACMFPLFTLHGSGHNPRPGGKARWRQRLM 292
Query: 288 HKIHDYKKRFGENMCVGCGRCDDMCPQYISISEAYEKV 325
HK + + +R+ CVGCGRC CP + I + V
Sbjct: 293 HKFNYFVERYNATACVGCGRCIKNCPVNLDIRQVLADV 330
>gi|116754222|ref|YP_843340.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanosaeta thermophila
PT]
gi|116665673|gb|ABK14700.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanosaeta thermophila
PT]
Length = 329
Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats.
Identities = 79/288 (27%), Positives = 127/288 (44%), Gaps = 58/288 (20%)
Query: 61 PAKEALLPVNEVLFYFTEDE--YKVAAEDTRERLVF-LRACDMNAVKRIDQIYLGNGASN 117
P LP E LF + ++ Y D R+RL+ +R CD+ A+ +D+I L A
Sbjct: 53 PPTRLFLPPRETLFSYLQESGLYTFEVPDVRKRLIVGVRPCDLRALSLLDRIMLSEPA-- 110
Query: 118 DFFYTKTRKKTKFVVVGCSKTFRNCFCVSMGTN--------------------KADNYDA 157
D Y++ R+ T + + C++ +CFC MG+ +A + D
Sbjct: 111 DELYSERRRSTAIIALNCTEPSESCFCAQMGSGPEAQEGFDLLLTDLGERYLLEAGSPDG 170
Query: 158 AMNVRGNEIQLEIRDEDLNIFSGREID-------------FDIDYVTKNEFEVDLPEKVD 204
M R +E LE+ D+++ I RE+ +D++ E+D
Sbjct: 171 IMLARVSEELLEVADDEM-IVRKRELMRKSCERIVSARPWLSLDHMRPRLREID------ 223
Query: 205 FMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVDG 264
W CI+CG C++ CPTC CF++ D+ + GER R SC + G
Sbjct: 224 ---------WRSLSKECISCGGCSFVCPTCHCFTIADLGLPD----GERIRCADSCILSG 270
Query: 265 YTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGENMCVGCGRCDDMC 312
+ +A G + R + +R+ + K+ R G CVGCGRCD +C
Sbjct: 271 FHRMASGANPRARPEERLLSWYMEKLEHMPVRTGMLGCVGCGRCDRVC 318
>gi|110601765|ref|ZP_01389935.1| 4Fe-4S ferredoxin, iron-sulfur binding [Geobacter sp. FRC-32]
gi|110547516|gb|EAT60772.1| 4Fe-4S ferredoxin, iron-sulfur binding [Geobacter sp. FRC-32]
Length = 334
Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats.
Identities = 86/290 (29%), Positives = 127/290 (43%), Gaps = 39/290 (13%)
Query: 62 AKEALLPVNEVLFYFTE--DEYKVAAEDT----RERLVFLRACDMNAVKRIDQIYLGNGA 115
AKE P+ E + + D KVA D LV R CD A +D ++ +
Sbjct: 55 AKETFFPLCETILTYERNCDGVKVADVDVAAFPETVLVGARPCDAAAPSILDAVFTWD-- 112
Query: 116 SNDFFYTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKADNYDAAMNVRGNEIQL------- 168
ND F+ + R+KT + + C+ CFC + G + D+ +G+++ L
Sbjct: 113 YNDEFFLERRRKTTIIGLACATADDACFCTATGLSPQDS-------KGSDLFLTPLTEGG 165
Query: 169 ---EIRDEDLNIFSGREID-FDIDYVTKN-------EFEVDLPEKVDFMYMQNHK--MWD 215
+ E F GR F TK F +DL E + +N + +W
Sbjct: 166 YACDGFTEKGKAFLGRYASLFGEQGETKPLPVSEPVAFRLDLAE-IKTWLTENFESPLWQ 224
Query: 216 EYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFR 275
E RC CG C + CP C CF + D + + G RR+ W +C +TN A GH+ R
Sbjct: 225 EIADRCAGCGACAFLCPVCHCFDIVD---EGTDAKGARRKSWDACGFGKFTNHASGHNPR 281
Query: 276 VKHGQRMRFKTLHKIHDYKKRFGENMCVGCGRCDDMCPQYISISEAYEKV 325
+R R + +HK Y +FG+ +C GCGRC CP I I EK+
Sbjct: 282 DIQNKRYRNRIMHKFKYYGDKFGQTLCTGCGRCIRHCPVGIDIKAVLEKI 331
>gi|78188999|ref|YP_379337.1| hydrogenase/sulfur reductase, beta subunit [Chlorobium
chlorochromatii CaD3]
gi|78171198|gb|ABB28294.1| hydrogenase/sulfur reductase, beta subunit [Chlorobium
chlorochromatii CaD3]
Length = 337
Score = 118 bits (295), Expect = 7e-25, Method: Composition-based stats.
Identities = 93/314 (29%), Positives = 142/314 (45%), Gaps = 44/314 (14%)
Query: 42 RYAKVNNFSEMNW----EDKSHFPAKEALLPVNEVLFYFTEDEYKVAAED----TRERLV 93
RYA V + +E ++ D++ KE P +E + +T + V D T +R+V
Sbjct: 35 RYALVEHAAECDFGMLLPDRA---LKELFFPQSEPMVRYTVKKQAVETVDFAPPTTQRIV 91
Query: 94 F-LRACDMNAVKRIDQIYLGNGASNDFFYTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKA 152
F RACD + + ID G +D+++ + R T V + CS C C S+ +
Sbjct: 92 FGARACDTSGLA-IDDPLFGWDYKDDYWFQR-RNNTVIVTIACSHADDFCMCTSLKLSPD 149
Query: 153 DNYDAAM------NVRGNEIQLEIRDEDLNIFSGREIDFDIDYVTKNEFEV-----DLPE 201
+ A + N +G +++ EI D GRE I + + E ++P
Sbjct: 150 SSKGADVLLRPLQNGKGWQVE-EITDR------GREAFQAIAPLLQESNEAAAPLANVPV 202
Query: 202 KVDF----MYMQN-----HKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGE 252
K D ++QN K W E RCI CG C + CPTC CF +QD N G
Sbjct: 203 KFDLDKCVAWLQNPENFESKFWKEISMRCIGCGSCTFLCPTCHCFDIQDEGDLYN---GI 259
Query: 253 RRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGENMCVGCGRCDDMC 312
RR+ W SC +T GH+ R R R + +HK + + +F N C GCGRC C
Sbjct: 260 RRKNWDSCSFTLFTMHTSGHNPRSTQSTRWRQRIMHKFNYFPGKFSINSCSGCGRCTRQC 319
Query: 313 PQYISISEAYEKVA 326
P + I+E + ++
Sbjct: 320 PVDMGITETLQAIS 333
>gi|108800385|ref|YP_640582.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Mycobacterium sp.
MCS]
gi|119869514|ref|YP_939466.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
[Mycobacterium sp. KMS]
gi|126436008|ref|YP_001071699.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
[Mycobacterium sp. JLS]
gi|108770804|gb|ABG09526.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Mycobacterium sp.
MCS]
gi|119695603|gb|ABL92676.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
[Mycobacterium sp. KMS]
gi|126235808|gb|ABN99208.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
[Mycobacterium sp. JLS]
Length = 352
Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats.
Identities = 79/260 (30%), Positives = 118/260 (45%), Gaps = 23/260 (8%)
Query: 86 EDTRERLVFLRACDMNAVKRIDQIYLGNGASNDFFYTKTRKKTKFVVVGCSKTFRNCFCV 145
E R + +RACD++A++ +D + LG GA D +T ++ V V C++ CFC
Sbjct: 87 EPPRYAFIGVRACDLSAIRVLDGV-LGGGAHPDRGFTGRLERLFVVAVNCTEPGGLCFCA 145
Query: 146 SMGTNKA--DNYDAAMNVR----GNEIQLEIRDEDLNIFSGREIDFDIDYVTKNEFEVDL 199
SMGT A YD A+ R G +++ +D D + + D+
Sbjct: 146 SMGTGPAVGPGYDLALTERIDGQGRRYVVDVGSDDGADVLAAVAHRDAEPAEVDSARADV 205
Query: 200 PEKVDFMYMQNHKM--------------WDEYDTRCIACGRCNYSCPTCTCFSMQDIHYK 245
E + M Q ++ W+E RC+ CG C CPTC C S++D+
Sbjct: 206 REAANHMGRQMPELDLRRLLIDSRESPQWEEVAGRCLTCGNCTMVCPTCFCTSVEDVTDL 265
Query: 246 ENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGENMCVGC 305
E+ ER WASC +T + G S R R R HK+ + +FG + CVGC
Sbjct: 266 SGEH-AERWMHWASCFEFDFTFVHEG-STRQTASSRYRHWLTHKLGSWHDQFGSSGCVGC 323
Query: 306 GRCDDMCPQYISISEAYEKV 325
GRC CP I I+E ++
Sbjct: 324 GRCIAWCPTGIDITEEMNRM 343
>gi|110597811|ref|ZP_01386094.1| hydrogenase/sulfur reductase, beta subunit [Chlorobium ferrooxidans
DSM 13031]
gi|110340536|gb|EAT59019.1| hydrogenase/sulfur reductase, beta subunit [Chlorobium ferrooxidans
DSM 13031]
Length = 359
Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 92/338 (27%), Positives = 164/338 (48%), Gaps = 45/338 (13%)
Query: 5 LSIEEFDRGLEELSKKYLILAPRTFEKRGTYSDTD-----VVRYAKVNNFSEMNWE-DKS 58
+S EF R ++ L + PR DTD V ++ V++ E+ ++ ++
Sbjct: 6 ISKAEFKRFIDALVRSNSSFGPRMV-------DTDSRGEAVYQFQPVSSVDEIAFDYTRT 58
Query: 59 HFPAKEALLPVNEVL--FYFTEDEY--KVAAEDTRERLVFLRACDMNAVKRIDQIYLGNG 114
AK LP + L F+F +D++ KV+ E L LRACD++A+ +D + L NG
Sbjct: 59 ASSAKHFFLPFRQELSRFHFHDDDWDQKVSYEADPVVLFGLRACDISALNILDDVLL-NG 117
Query: 115 ASNDFFYTKTRKKTKFVVVGCSKTFRNCFCVSMG------------TNKADNYDAAMN-- 160
+Y RK T FV+ +CFC SM ++ D Y A+N
Sbjct: 118 HFPSAYYLAKRKNT-FVIGMDHLPLPDCFCKSMNHHTVPTGFNLFCSDIGDEYYLAINSS 176
Query: 161 -----VRGNEIQLEIRDEDLNIFSGREIDFDIDYVTKNEFEVD-LPEKVDFMYMQNHKMW 214
+R E + DE+ + R++ I + E +V LP +D + + +W
Sbjct: 177 KAFNFLREFETRDPQYDENCRLAERRKL---ISSSFRTEIDVTGLPAILDIEF--DSPVW 231
Query: 215 DEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSF 274
++ +C++CG C CPTC C+S+++ + ++ ++R++ SC + + +AGGH+F
Sbjct: 232 KKWGDKCLSCGTCAMVCPTCYCYSVEESFESDLQSSSRQKRLY-SCNLVDFAAVAGGHNF 290
Query: 275 RVKHGQRMRFKTLHKIHDYKKRFGENMCVGCGRCDDMC 312
R K+G R++++ H+ + + + +CVGC RC C
Sbjct: 291 RPKNGDRLKYRYYHQHRGFAENANQQICVGCNRCGKAC 328
>gi|14591101|ref|NP_143176.1| cytochrome-c3 hydrogenase alpha chain [Pyrococcus horikoshii OT3]
gi|3257710|dbj|BAA30393.1| 372aa long hypothetical cytochrome-c3 hydrogenase alpha chain
[Pyrococcus horikoshii OT3]
Length = 372
Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 105/333 (31%), Positives = 153/333 (45%), Gaps = 42/333 (12%)
Query: 9 EFDRGLEELSKKYLILAP-RTFEKRGTYSDTDVVRYAKVNNFSEMNWEDKSHFPAKEALL 67
EF L+E K Y AP + EK + + D VR + + + K F +E +
Sbjct: 18 EFLERLKEWGKLY---APVKISEKFYDFREIDDVRKVEFHYTRTIMPPKKFFFKPREKMF 74
Query: 68 PVNEVLFYFTEDEYKVAAEDTRERLVF-LRACDMNAVKRIDQIYLGNGASNDFFYTKTRK 126
F ++ EYK ED ++F + ACD+ +K +D IYL D +Y R+
Sbjct: 75 E-----FDLSKPEYKEVIEDVEPFVLFGVHACDIYGLKILDTIYLDELP--DKYYKIRRE 127
Query: 127 KTKFVVVGCSKTFRNCFCVSMGTNKADN-YDAAMN-------VR-GNEIQLEIRDEDLNI 177
K + + C CFC T+ AD+ +D ++ VR G+ I D+++ +
Sbjct: 128 KGIIIGISCMPD-EYCFCNLRKTDFADDGFDLFLHELPDGWLVRVGSPTGHRIVDKNIKL 186
Query: 178 FSGREIDFDIDYVTKNEFEVDLPEKVDFMYMQN-------------HKMWDEYDTRCIAC 224
F E D D EFE E F Y ++ H MW+E +C+AC
Sbjct: 187 F---EEVTDEDICAFREFEKKRQEA--FKYHEDWDNLRYLLELEMEHPMWEEEANKCLAC 241
Query: 225 GRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRF 284
G C +CPTC C+ +QDI + G R R W SCQ + +AGGH+FR R R
Sbjct: 242 GICTLTCPTCRCYEVQDI-VNLDGITGYRERRWDSCQFRSHGLVAGGHNFRPTKKDRFRN 300
Query: 285 KTLHKIHDYKKRFGENMCVGCGRCDDMCPQYIS 317
+ L K + Y ++ G + CVGCGRC CP IS
Sbjct: 301 RYLCK-NAYNEKLGLSYCVGCGRCTAFCPAGIS 332
>gi|117928223|ref|YP_872774.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidothermus
cellulolyticus 11B]
gi|117648686|gb|ABK52788.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidothermus
cellulolyticus 11B]
Length = 389
Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 86/270 (31%), Positives = 126/270 (46%), Gaps = 42/270 (15%)
Query: 92 LVFL--RACDMNAVKRIDQIYLGNGASNDFFYTKTRKKTKFVVVGCSKTFRNCFCVSM-- 147
L FL RAC+++A++ D+++LG G + + Y + R+ V V C + CFC SM
Sbjct: 127 LAFLGVRACELHAIQIQDRVFLG-GKNPEPDYARRRQDLFIVAVNCYEPAGTCFCASMET 185
Query: 148 GTNKADNYDAAMN-VRGNEIQLEIRDEDLNIFSGREIDFDIDYVTKNEFEV--------- 197
G YD A++ + G+E + + + G EI + E +V
Sbjct: 186 GPQVESGYDIALSEILGSEHRFLV---EAGTKRGAEIVNLLPLRPATEADVSAAREAVEA 242
Query: 198 ------------DLPEKVDFMYMQN--HKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIH 243
DLPE + +N H WD+ RC++CG C +CPTC CFS++D
Sbjct: 243 AAGRMGRQLDTRDLPE----LLARNLEHPQWDDVAARCLSCGNCTLACPTCFCFSVEDT- 297
Query: 244 YKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGENMCV 303
+ +R RVWASC ++ I GG S R R R HK+ + ++FG CV
Sbjct: 298 TDLLDGAAQRSRVWASCFSLEHSYIHGG-SVRASAKARYRQWLTHKLGTWWEQFGTAGCV 356
Query: 304 GCGRCDDMCPQYISISEAYEKVAHAMREKD 333
GCGRC CP I I+ A A+R D
Sbjct: 357 GCGRCITWCPVGIDITAE----AAAIRATD 382
>gi|116749403|ref|YP_846090.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
[Syntrophobacter fumaroxidans MPOB]
gi|116698467|gb|ABK17655.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
[Syntrophobacter fumaroxidans MPOB]
Length = 350
Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats.
Identities = 89/322 (27%), Positives = 138/322 (42%), Gaps = 38/322 (11%)
Query: 33 GTYSDTDVVRYAKVNNFSEM-NWED------KSHFPAKEALLPVNEVLFYFT-------E 78
G Y VR + + F+E+ N ED + K P E +F F+ +
Sbjct: 20 GRYKVFGPVRRGRYHEFAEIRNAEDVDLAYRNTRLSPKGLFHPQGERMFQFSLAAGDPDK 79
Query: 79 DEYKVAAEDTRERLVF-LRACDMNAVKRIDQIYLGNGASNDFFYTKTRKKTKFVVVGCSK 137
K A +D R++ +R CD A +D A D ++ K R+ T + + C+
Sbjct: 80 GILKEAPKDFSPRVILGIRPCDAKAF-HLDDANFDTAAIKDPWWVKRREATTLIGLACNH 138
Query: 138 TFRNCFCVSMGTN--KADNYDAAMNVRGNEIQLEIRDED----LNIFSGRE--------- 182
CFC S+GT A DA + G+ +E+ E + S E
Sbjct: 139 PCSTCFCTSVGTGPFDASGLDAMLVDTGDGYVVEVLTEKGKAAVEAVSEWETAPTGSAEA 198
Query: 183 ---IDFDIDYVTKNEFEVDLPEKVDFMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCFSM 239
+ + +F++ D + + N W+E CI CG C + CPTC CF +
Sbjct: 199 IAALKKSAEESIGKQFDIKAVIDQDMLELFNGAFWEEVQFACINCGTCTFLCPTCWCFDI 258
Query: 240 QDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGE 299
QD E G+R R+W SC +T GH+ R + QR+R + +HK+ Y ++ +
Sbjct: 259 QDEVCGEQ---GDRLRMWDSCMFPLFTFHGSGHNPRSQKVQRVRQRFMHKLKYYPDKYHQ 315
Query: 300 NM-CVGCGRCDDMCPQYISISE 320
+ CVGCGRC CP I I +
Sbjct: 316 GVACVGCGRCVSACPVNIDIRQ 337
>gi|147677741|ref|YP_001211956.1| hypothetical protein PTH_1406 [Pelotomaculum thermopropionicum SI]
gi|146273838|dbj|BAF59587.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
Length = 346
Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats.
Identities = 90/330 (27%), Positives = 144/330 (43%), Gaps = 35/330 (10%)
Query: 14 LEELSKKYLILAPRTFEKRGTYSDTDVVRYAKVNNFSEMNWE-DKSHFPAKEALLPVNEV 72
L+ L+K Y + AP E+ V + KV E+ + S K L P E
Sbjct: 15 LDRLAKDYALFAPVREEE-------TVTLFKKVAGAKEVALDYTNSDVSPKGCLFPQTEK 67
Query: 73 LF--YFTEDEYKVAA-EDTRERLVF-LRACDMNAVKRIDQIYLGNGASNDFFYTKTRKKT 128
F +T D ++ ED + ++F R CD+ ++ +D ++ G D +Y R+ T
Sbjct: 68 TFSYIYTGDSLQINKNEDVQNTVIFGARPCDVRSILSLDPVF--EGKFVDDYYAARRQNT 125
Query: 129 KFVVVGCSKTFRNCFCVSMGTNKADNY--DAAMNVRGNEIQLEIRDEDLNIF-------- 178
+ + C+K CFC + + D D + G++ +E+ + F
Sbjct: 126 VIIGLSCNKVLSTCFCNAFNSGPCDGTGSDLLLTDLGDKYYVEVNTDKGKSFVEAYGQYF 185
Query: 179 --SGREIDFDIDYVTKNEFEVDLPEKVDF-----MYMQNHKM--WDEYDTRCIACGRCNY 229
G E E +VD + +N ++ WD+ +C+ CG C Y
Sbjct: 186 ASQGAEQLAKAKEELAKTLEGQFIRQVDLGGVKEVLDENFELPYWDKVFKKCLGCGICTY 245
Query: 230 SCPTCTCFSMQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHK 289
CPTC CF + D + + GER R W SC +T +AGGH+ R +R+R + +HK
Sbjct: 246 VCPTCHCFDIFD--FTTGDFTGERFRCWDSCMFPDFTLMAGGHNPRPTKKERVRNRFMHK 303
Query: 290 IHDYKKRFGENMCVGCGRCDDMCPQYISIS 319
+ + R+ CVGCGRC CP I I+
Sbjct: 304 LKYHLDRYNIAGCVGCGRCIAKCPVNIDIT 333
>gi|14521076|ref|NP_126551.1| hydrogenase (cytochrome-c3 hydrogenase beta chain) [Pyrococcus
abyssi GE5]
gi|5458293|emb|CAB49782.1| hydB-1 cytochrome-c3 hydrogenase, beta chain (EC 1.12.2.1)
[Pyrococcus abyssi GE5]
Length = 367
Score = 114 bits (286), Expect = 7e-24, Method: Composition-based stats.
Identities = 92/294 (31%), Positives = 137/294 (46%), Gaps = 35/294 (11%)
Query: 57 KSHFPAKEALLPVNEVLFYF--TEDEYKVAAEDTRERLVF-LRACDMNAVKRIDQIYLGN 113
++ P K+ E LF F ++ EY+ ED ++F + ACD+ +K +D +YL
Sbjct: 52 RTIMPPKKFFFKPREKLFEFDISKPEYREVIEDVEPFVLFGVHACDIYGLKLLDTVYLDE 111
Query: 114 GASNDFFYTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKADN-YDAAMN-------VR-GN 164
D +Y R+K + + C CFC T+ AD+ +D ++ VR G
Sbjct: 112 FP--DKYYKVRREKGIIIGISCMPD-EYCFCNLRETDFADDGFDLFLHELPDGWLVRVGT 168
Query: 165 EIQLEIRDEDLNIFSGREIDFDIDYVTKNEFEVDLPEKVDFMYMQN-------------H 211
I D+++ +F E + D EFE E F Y ++ H
Sbjct: 169 PTGHRIVDKNIKLF---EEVTNEDICAFREFEKKRHEA--FKYHEDWGNLRYLLELEMEH 223
Query: 212 KMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVDGYTNIAGG 271
MWDE +C+ACG CN +CPTC C+ +QDI + G R R W SCQ + +AGG
Sbjct: 224 PMWDEEAEKCLACGICNTTCPTCRCYEVQDI-VNLDGVTGYRERRWDSCQFRSHGLVAGG 282
Query: 272 HSFRVKHGQRMRFKTLHKIHDYKKRFGENMCVGCGRCDDMCPQYISISEAYEKV 325
H+FR R + L K + Y ++ G + CVGCGRC CP IS ++
Sbjct: 283 HNFRPTKKSRFLNRYLCK-NSYNEKLGISFCVGCGRCTAFCPAGISFVRNLRRI 335
>gi|563905|emb|CAA53034.1| hydrogenase (alpha subunit) [Pyrococcus furiosus DSM 3638]
Length = 367
Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats.
Identities = 88/287 (30%), Positives = 133/287 (46%), Gaps = 35/287 (12%)
Query: 56 DKSHFPAKEALLPVNEVLFYF--TEDEYKVAAEDTRERLVF-LRACDMNAVKRIDQIYLG 112
+++ P K+ E LF F ++ EY+ E+ ++F + ACD+ +K +D +YL
Sbjct: 51 NRTIMPPKKFFFKPREKLFEFDISKPEYREVIEEVEPFIIFGVHACDIYGLKILDTVYLD 110
Query: 113 NGASNDFFYTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKADN---------YDAAMNVRG 163
D +Y R+K + + C CFC T+ AD+ D + G
Sbjct: 111 EFP--DKYYKVRREKGIIIGISCMPD-EYCFCNLRETDFADDGFDLFFHELPDGWLVRVG 167
Query: 164 NEIQLEIRDEDLNIFSGREIDFDIDYVTKNEFEVDLPEKVDFMYMQN------------- 210
+ D+++ +F E D D +FE + F Y ++
Sbjct: 168 TPTGHRLVDKNIKLF---EEVTDKDICAFRDFEKRRQQA--FQYHEDWGNLRYLLELEME 222
Query: 211 HKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVDGYTNIAG 270
H MWDE +C+ACG CN +CPTC C+ +QDI + G R R W SCQ + +AG
Sbjct: 223 HPMWDEEADKCLACGICNTTCPTCRCYEVQDI-VNLDGVTGYRERRWDSCQFRSHGLVAG 281
Query: 271 GHSFRVKHGQRMRFKTLHKIHDYKKRFGENMCVGCGRCDDMCPQYIS 317
GH+FR R R + L K + Y ++ G + CVGCGRC CP IS
Sbjct: 282 GHNFRPTKKDRFRNRYLCK-NAYNEKLGLSYCVGCGRCTAFCPANIS 327
>gi|18977263|ref|NP_578620.1| sulfhydrogenase beta subunit [Pyrococcus furiosus DSM 3638]
gi|18892932|gb|AAL81015.1| sulfhydrogenase beta subunit [Pyrococcus furiosus DSM 3638]
Length = 367
Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats.
Identities = 88/287 (30%), Positives = 133/287 (46%), Gaps = 35/287 (12%)
Query: 56 DKSHFPAKEALLPVNEVLFYF--TEDEYKVAAEDTRERLVF-LRACDMNAVKRIDQIYLG 112
+++ P K+ E LF F ++ EY+ E+ ++F + ACD+ +K +D +YL
Sbjct: 51 NRTIMPPKKFFFKPREKLFEFDISKPEYREVIEEVEPFIIFGVHACDIYGLKILDTVYLD 110
Query: 113 NGASNDFFYTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKADN---------YDAAMNVRG 163
D +Y R+K + + C CFC T+ AD+ D + G
Sbjct: 111 EFP--DKYYKVRREKGIIIGISCMPD-EYCFCNLRETDFADDGFDLFFHELPDGWLVRVG 167
Query: 164 NEIQLEIRDEDLNIFSGREIDFDIDYVTKNEFEVDLPEKVDFMYMQN------------- 210
+ D+++ +F E D D +FE + F Y ++
Sbjct: 168 TPTGHRLVDKNIKLF---EEVTDKDICAFRDFEKRRQQA--FKYHEDWGNLRYLLELEME 222
Query: 211 HKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVDGYTNIAG 270
H MWDE +C+ACG CN +CPTC C+ +QDI + G R R W SCQ + +AG
Sbjct: 223 HPMWDEEADKCLACGICNTTCPTCRCYEVQDI-VNLDGVTGYRERRWDSCQFRSHGLVAG 281
Query: 271 GHSFRVKHGQRMRFKTLHKIHDYKKRFGENMCVGCGRCDDMCPQYIS 317
GH+FR R R + L K + Y ++ G + CVGCGRC CP IS
Sbjct: 282 GHNFRPTKKDRFRNRYLCK-NAYNEKLGLSYCVGCGRCTAFCPANIS 327
>gi|67154778|ref|ZP_00416523.1| 4Fe-4S ferredoxin, iron-sulfur binding domain [Azotobacter
vinelandii AvOP]
gi|67088911|gb|EAM08377.1| 4Fe-4S ferredoxin, iron-sulfur binding domain [Azotobacter
vinelandii AvOP]
Length = 382
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 79/261 (30%), Positives = 119/261 (45%), Gaps = 29/261 (11%)
Query: 84 AAEDTRERLVFL--RACDMNAVKRIDQIYLGNGASNDFFYTKTRKKTKFVVVGCSKTFRN 141
+A +T R FL RACD+ A+ D+++ + +D Y + R+ V + CS+
Sbjct: 110 SAVETAPRYAFLGVRACDLRAIAIQDRVFCADDCRDDA-YERRRRDAFIVALNCSEAGDT 168
Query: 142 CFCVSMGTNKADNYDAAMNVRGNEIQLEIRDE---DLNIFSGREIDFDIDYVTKNEFEVD 198
CFCVSMGT + A ++ E+ R E ++ +G E+ + T E +
Sbjct: 169 CFCVSMGT--GPRAEGAFDLALTELLDASRHEFLVEVGSAAGEELLAGLPRRTATEPDRA 226
Query: 199 ------------LPEKVDFMYMQN-------HKMWDEYDTRCIACGRCNYSCPTCTCFSM 239
+ ++ +Q H WDE RC+AC C CPTC C ++
Sbjct: 227 AAASVVARTAGRMGRSLETAGLQELLESNPEHPRWDEVAERCLACANCTMVCPTCFCTTL 286
Query: 240 QDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGE 299
+D H + ER R+W SC ++ I GG S R R R HK+ + +FG
Sbjct: 287 ED-HSDLSGGSAERVRLWDSCFTLDFSYIHGG-SVRQTDKGRYRQWMTHKLATWFDQFGS 344
Query: 300 NMCVGCGRCDDMCPQYISISE 320
+ CVGCGRC CP I I+E
Sbjct: 345 SGCVGCGRCITWCPVGIDITE 365
>gi|149917174|ref|ZP_01905674.1| hypothetical protein PPSIR1_39870 [Plesiocystis pacifica SIR-1]
gi|149822090|gb|EDM81483.1| hypothetical protein PPSIR1_39870 [Plesiocystis pacifica SIR-1]
Length = 680
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 82/282 (29%), Positives = 123/282 (43%), Gaps = 48/282 (17%)
Query: 92 LVFLRACDMNAVKRIDQIYLGNGASNDFFYTKTRKKTKFVVVGCSKTFRNCFCVSMGTNK 151
L+ LRAC++ A+ D ++ G G D Y + R++ + V C + CFCVS T
Sbjct: 120 LIGLRACELAAMAVQDAVWTG-GPFVDPRYARRRERALIIAVDCLEPGELCFCVSTNTGP 178
Query: 152 ADNYDAAMNVR----GNEIQLEIRDE----------------DLNIFS------------ 179
A+ ++R G E +E+ E +F+
Sbjct: 179 GVEAGASFDLRLTELGEEFLVEVGSERGQALIDGLGELAEPSTAQLFAARTQGVLAAAME 238
Query: 180 --GREIDFDIDYVTKNEFEVDLPEKVDFMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCF 237
GRE D+D LPE + F + +H WDE RC++CG C CPTC C
Sbjct: 239 LHGRERQLDLD---------GLPELL-FANL-DHPRWDELAARCLSCGSCTLVCPTCFCH 287
Query: 238 SMQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRF 297
+++ + ER R W SC D ++ I G FR + +R R HK+ + +F
Sbjct: 288 RVEE-RAPLDAPTSERVRHWDSCFTDEHSRIHGAQ-FRPQIRERYRQWMTHKLGAWVSQF 345
Query: 298 GENMCVGCGRCDDMCPQYISISEAYEKVAHAMREKDNEELIS 339
G + CVGCGRC CP I I+E + A D+ E ++
Sbjct: 346 GTSGCVGCGRCIAWCPVGIDITEEVAAIRAAPVAPDDAEPVA 387
>gi|68549006|ref|ZP_00588474.1| 4Fe-4S ferredoxin, iron-sulfur binding [Pelodictyon
phaeoclathratiforme BU-1]
gi|68244137|gb|EAN26330.1| 4Fe-4S ferredoxin, iron-sulfur binding [Pelodictyon
phaeoclathratiforme BU-1]
Length = 337
Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats.
Identities = 88/314 (28%), Positives = 143/314 (45%), Gaps = 46/314 (14%)
Query: 43 YAKVNNFSEMNW----EDKSHFPAKEALLPVNEVLFYFTEDEYKVAAED----TRERLVF 94
YA V N +E+++ D+S KE P E + +T + ++ D +R++F
Sbjct: 36 YAAVENGAELDFGMVLPDRS---LKELFFPQTEPMVRYTIKKNEIDTVDFTPPQGKRIIF 92
Query: 95 -LRACDMNAVKRIDQIYLGNGASNDFFYTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKAD 153
RACD + + ID G +++++ + R ++ V + C+ C C S+
Sbjct: 93 GARACDASGLA-IDDPLFGWDYKDEYWFQR-RNESVIVTIACTTADDFCMCTSLKL---- 146
Query: 154 NYDAAMNVRGNEIQLEIRDEDLNIF------SGREIDFDI--DYVTKNEF----EVDLPE 201
A + +G++I L + + GRE F I DY+ + V +PE
Sbjct: 147 ---APDSTKGSDILLRPLERNRGWLVEELTDRGREA-FAIISDYLQEGSEPALPTVVVPE 202
Query: 202 KVDF----MYMQN-----HKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGE 252
K + ++QN K W E RCI C C Y CPTC CF +QD + + G
Sbjct: 203 KFNLDACVTWLQNPENFDSKFWKEISMRCIGCASCTYLCPTCHCFDIQD---EGDTYSGI 259
Query: 253 RRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGENMCVGCGRCDDMC 312
RR+ W SC +T GH+ R R R + +HK + + +F N C GCGRC C
Sbjct: 260 RRKNWDSCSFSLFTMHTSGHNPRSTQSARWRQRIMHKFNYFPGKFNVNSCSGCGRCSRQC 319
Query: 313 PQYISISEAYEKVA 326
P + I+E ++++
Sbjct: 320 PVDMGITETLQEIS 333
>gi|2746737|gb|AAB94933.1| NiFe hydrogenase beta subunit [Thermococcus litoralis]
Length = 369
Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats.
Identities = 91/296 (30%), Positives = 146/296 (49%), Gaps = 26/296 (8%)
Query: 43 YAKVNNFSEMNWE-DKSHFPAKEALLPVNEVLFYFT--EDEYKVAAEDTRERLVF-LRAC 98
+ +V + S++ ++ +++ P K+ E +F F+ + EYK E+ +VF + AC
Sbjct: 39 FREVEDMSQIEFKYNRTIMPPKKFFFLPREKMFEFSISKAEYKEVIENVEPFVVFGVHAC 98
Query: 99 DMNAVKRIDQIYLGNGASNDFFYTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKADN-YDA 157
D+ +K +D IYL D +Y R+K + + C CFC T+ AD+ +D
Sbjct: 99 DIFGLKIMDTIYLDELP--DKYYKVRREKGIIIGISCVPD-EYCFCNLRETDFADDGFDL 155
Query: 158 AMN-------VR-GNEIQLEIRDEDLNIF---SGREIDFDIDYVTKNEFEVDLPEK-VDF 205
++ VR G I D+++ +F + +++ D+ K + E D
Sbjct: 156 FLHELPDGWLVRVGTPTGHRIVDKNIKLFEEVTSQDVCNFRDFENKKQQMFRYHEDWADL 215
Query: 206 MYM----QNHKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQ 261
Y+ H MWDE C+ACG CN +CPTC CF ++DI + G R R W SCQ
Sbjct: 216 RYLLELETEHPMWDEQSDICLACGNCNTTCPTCRCFDVRDIPNIDGVT-GVRVRRWDSCQ 274
Query: 262 VDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGENMCVGCGRCDDMCPQYIS 317
+ + +AGGH+FR R + + K + Y ++ G + CVGCGRC CP IS
Sbjct: 275 LVRHGMVAGGHNFRPTKKSRFMNRYMCK-NSYVEKLGLSYCVGCGRCTYFCPAEIS 329
>gi|110601270|ref|ZP_01389464.1| 4Fe-4S ferredoxin, iron-sulfur binding [Geobacter sp. FRC-32]
gi|110548005|gb|EAT61237.1| 4Fe-4S ferredoxin, iron-sulfur binding [Geobacter sp. FRC-32]
Length = 310
Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats.
Identities = 80/307 (26%), Positives = 140/307 (45%), Gaps = 29/307 (9%)
Query: 34 TYSDTDVVRYAKVNNFSEMNWE-DKSHFPAKEALLPVNEVLFYFTEDEYKVAAEDTRERL 92
T + V+ + V++ ++N + ++ P K+ LLP + F A ER
Sbjct: 10 TINRQGVLSFNPVSSIFDLNLDYHRTLLPPKKYLLPPKTTILQFESGSGYTQATPPNERT 69
Query: 93 VF--LRACDMNAVKRIDQIYLGNGASNDFFYTKTRKKTKFVVVGCSKTFRNCFCVSMGTN 150
V L ACD+ ++ +D+++L + D Y R + V + C K CFC +G
Sbjct: 70 VLFGLHACDLASIAYLDRVFLED--RPDPIYQSRRNRLVLVGISC-KPDEFCFCGELGIE 126
Query: 151 KAD-NYDAAMN--------VRGNEIQLEIRDEDLNIFSGREIDFDIDYVTKNEFEVDLPE 201
+ YD + ++G+++ EI E N+ EI V K +
Sbjct: 127 SSSVPYDLFLAKGEGGFIVLQGSQLGAEIIAELTNL---TEI---TGLVRKTAVAAETAA 180
Query: 202 KVDFMYMQNHK------MWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRR 255
+D +Q H+ +WD++ RC++CG C+ CPTC C +++ + + R +
Sbjct: 181 HID-RAVQRHETFDDSPLWDDFARRCLSCGACSLCCPTCYCLDVREYGALDGQT-ATRIQ 238
Query: 256 VWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGENMCVGCGRCDDMCPQY 315
W +C + + GG +FR +R R++ LHK + + G CVGCGRC ++CP
Sbjct: 239 EWDNCLFKAHGEVTGGINFRKTRQERFRYRFLHKYYGFGPLRGVISCVGCGRCREVCPVR 298
Query: 316 ISISEAY 322
I + E +
Sbjct: 299 IDLLELF 305
>gi|39995198|ref|NP_951149.1| heterodisulfide reductase, iron-sulfur binding subunit, putative
[Geobacter sulfurreducens PCA]
gi|39981960|gb|AAR33422.1| heterodisulfide reductase, iron-sulfur binding subunit, putative
[Geobacter sulfurreducens PCA]
Length = 334
Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats.
Identities = 75/290 (25%), Positives = 130/290 (44%), Gaps = 25/290 (8%)
Query: 43 YAKVNNFSEMNWEDKSHFPAKEALLPVNEVLFYFTEDEYKVAAEDT------RERLVFLR 96
Y + + E++ + AKE P+ E + + + D L+ R
Sbjct: 36 YEPLASAEELSLGELPRRSAKETFFPLCENILTYEKSSSGTTVHDIDPARFPETVLIGAR 95
Query: 97 ACDMNAVKRIDQIYLGNGASNDFFYTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKADNYD 156
CD+ A +D I+ + D F+ + R+KT + + C+ CFC ++G + AD
Sbjct: 96 PCDVAAAPVLDAIF--SWDFKDEFFLERRRKTTIIGLACTTADDACFCTAVGLSPADTRG 153
Query: 157 AAM---NVRGNEIQLEIRDED----LNIFSGREIDFDI-DYVTKNEFEVDLPEKVDFM-- 206
+ + + G + ++ + L +G + D + V+ E ++ P +D +
Sbjct: 154 SDLFLTPLAGGSYRCDVISDKGEALLAAHAGLFAETDTAEPVSLAEPQLG-PLDLDRIKA 212
Query: 207 YMQNH---KMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVD 263
++ H +W+E RC CG C + CP C CF + D + +E G RR+ W +C
Sbjct: 213 WLDTHFEDPLWEEIAARCAGCGACAFLCPACHCFDISD---EGSEKQGARRKHWDACGFG 269
Query: 264 GYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGENMCVGCGRCDDMCP 313
+T A GH+ R R R + +HK Y +FG+ +C GCGRC CP
Sbjct: 270 KFTYHASGHNPREVQPHRYRNRIMHKFKYYHDKFGQRLCTGCGRCIRACP 319
>gi|149174243|ref|ZP_01852870.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Planctomyces maris
DSM 8797]
gi|148846788|gb|EDL61124.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Planctomyces maris
DSM 8797]
Length = 374
Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats.
Identities = 95/365 (26%), Positives = 163/365 (44%), Gaps = 65/365 (17%)
Query: 14 LEELSKKYLILAPRTFEKRGTYSDTDVVRYAKVNNFSEM--NWEDKSHFPAKEALLPVN- 70
L+E ++ + +L R +E G D + + Y ++++ ++ W D P K L+ +
Sbjct: 17 LDEFARLFDVLISRGYEVIGPTIDQESIVYGELSSIDDLPRGWTDHQE-PGKYRLVKRDD 75
Query: 71 EVLFYF-------------------TEDEYKVA-----AEDTRERLVFL--RACDMNAVK 104
E LF + T D + AE+ R FL RAC++ A+K
Sbjct: 76 EALFGYVVGPSSWKKQLFPPVVTLATADRTEAGWQFEEAEEETPRYAFLGVRACELAAMK 135
Query: 105 RIDQIYLGNGASNDFFYTKTRKKTKFVVVGCSKTFRNCFCVSM--GTNKADNYDAAM--- 159
D+++ G G D Y + R + + V C++ CFC SM G +D A+
Sbjct: 136 IQDRVFTG-GPYVDSIYDQRRNQALIIAVNCTQAASTCFCTSMETGPRCKAGFDLALTEL 194
Query: 160 ---------NVRGNEIQLEIR------DEDLNIFSGREIDFDIDYVTKNEFEVDLPEKVD 204
+ G EI E++ ++D + R+ V + E D + D
Sbjct: 195 PDGFLVEVASAAGAEILQELKTLDVLPEQDSQAHAARQ-----QAVDQIERRFDTTDIKD 249
Query: 205 FMYMQN--HKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQV 262
+ M N H WDE RC++C C CPTC C S++++ +++ ER+R W SC
Sbjct: 250 LL-MSNLEHSQWDEVAERCLSCTNCTMVCPTCFCSSVEEVSDLTGDHV-ERQREWDSCFN 307
Query: 263 DGYTNIAGGHSFRVKHGQRMRFKT--LHKIHDYKKRFGENMCVGCGRCDDMCPQYISISE 320
++ + GG V++ R R++ HK+ + +FG + CVGCGRC CP I +++
Sbjct: 308 LDFSYMNGG---LVRNSIRNRYRQWLTHKLATWIDQFGTSGCVGCGRCITWCPVGIDLTQ 364
Query: 321 AYEKV 325
+ +
Sbjct: 365 EVDAI 369
>gi|68551597|ref|ZP_00590992.1| hydrogenase/sulfur reductase, beta subunit [Prosthecochloris
aestuarii DSM 271]
gi|68241531|gb|EAN23797.1| hydrogenase/sulfur reductase, beta subunit [Prosthecochloris
aestuarii DSM 271]
Length = 359
Score = 111 bits (277), Expect = 8e-23, Method: Composition-based stats.
Identities = 87/334 (26%), Positives = 161/334 (48%), Gaps = 37/334 (11%)
Query: 5 LSIEEFDRGLEELSKKYLILAPRTFEKRGTYSDTD-VVRYAKVNNFSEMNWE-DKSHFPA 62
+S +EF ++ L K L P+ + T + D + ++ +V++ E+ ++ +H A
Sbjct: 6 ISKKEFTAFVDTLVKANLSYGPKQVD---TAKNGDPIYQFKEVHSAEEIAFDYTATHSSA 62
Query: 63 KEALLPVNEVLFYFT--EDEYK--VAAEDTRERLVFLRACDMNAVKRIDQIYLGNGASND 118
K LLP +E L +FT + ++K +A E+T + L+ LRACD++ + +D + L NG
Sbjct: 63 KHLLLPYSEELSHFTFRDGDWKQEIAYENTPKVLIGLRACDISGLNILDDVLL-NGKFPS 121
Query: 119 FFYTKTRKKTKFVVVGCSKTFRNCFCVSMG------------TNKADNYDAAMN------ 160
+Y RK T F++ +CFC S+ ++ D Y ++N
Sbjct: 122 PYYLAHRKNT-FIIGMDHLPLPDCFCKSLNHHTVSKGFNLFCSDIGDKYYLSINSSKAYT 180
Query: 161 -VRGNEIQLEIRDEDLNIFSGREIDFDIDYVTKNEFEVD-LPEKVDFMYMQNHKMWDEYD 218
++ I+ ++D + R++ I + E EV LP +D + + +W ++
Sbjct: 181 YLKEFAIEDPSDEDDCRLIERRKL---IKQSFRTEVEVTGLPSFLDIEF--DSPIWKKWG 235
Query: 219 TRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKH 278
+C+ CG C CPTC C+ ++ H R + SC + + +AGGH+FR +
Sbjct: 236 DKCLNCGTCAMVCPTCYCYDTKE-HIDTGLEGASREKQLYSCNLVDFAEVAGGHNFRPGN 294
Query: 279 GQRMRFKTLHKIHDYKKRFGENMCVGCGRCDDMC 312
G R++++ H + + + +CVGC RC C
Sbjct: 295 GDRLKYRYYHHYRGFAENANQQICVGCNRCGRAC 328
>gi|119357070|ref|YP_911714.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Chlorobium
phaeobacteroides DSM 266]
gi|119354419|gb|ABL65290.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Chlorobium
phaeobacteroides DSM 266]
Length = 337
Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats.
Identities = 73/286 (25%), Positives = 129/286 (45%), Gaps = 23/286 (8%)
Query: 63 KEALLPVNEVLFYFTEDEYKVAAED----TRERLVF-LRACDMNAVKRIDQIYLGNGASN 117
K+ P E + + ++ + E+ ++R++F +R CD + + ID G +
Sbjct: 57 KDLFFPRTEPMVRYQIKKHAIETEEFLPPDQKRIIFGVRPCDASGLA-IDDPLFGWDYKD 115
Query: 118 DFFYTKTRKKTKFVVVGCSKTFRNCFCVSM--GTNKADNYDAAMNVRGNE---IQLEIRD 172
++++ + R ++ + + C+K+ C C S+ + + D + +E + E+ D
Sbjct: 116 EYWFNR-RNESVMITIACTKSDEFCMCTSLKLAPDSSKGSDILLRPLADEKGWLIEELSD 174
Query: 173 EDLNIFSGRE---IDFDIDYVTKNEFEVDLPEKVDFMYMQNHK-----MWDEYDTRCIAC 224
FS ID E V + +++N + W E RCI C
Sbjct: 175 RGKEAFSSIADLLIDDSAPLAPLAEVPVKFNLEASVAWLKNPENFDSHFWKEISARCIGC 234
Query: 225 GRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRF 284
G C + CPTC CF +QD + + G RR+ W SC +T GH+ RV R R
Sbjct: 235 GSCTFLCPTCHCFDIQD---EGDIYKGIRRKNWDSCSFALFTMHTSGHNPRVTQSSRWRQ 291
Query: 285 KTLHKIHDYKKRFGENMCVGCGRCDDMCPQYISISEAYEKVAHAMR 330
+ +HK + + +F N C GCGRC CP + I+E ++++ R
Sbjct: 292 RIMHKFNYFPGKFDMNSCSGCGRCTRQCPVDMGITETLQEISKLSR 337
>gi|16081223|ref|NP_393525.1| anaerobic sulfite reduction protein A related protein [Thermoplasma
acidophilum DSM 1728]
gi|10639192|emb|CAC11194.1| anaerobic sulfite reduction protein A related protein [Thermoplasma
acidophilum]
Length = 306
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 90/304 (29%), Positives = 141/304 (46%), Gaps = 39/304 (12%)
Query: 29 FEKRGTYSDTDVVRYAKVNNFSEMNWEDKSHFPAKEALLPVNEVLFYFTEDEYKVAAEDT 88
+E G D V ++K+++FS+++ E KS + K+ L+ +E + E K
Sbjct: 21 YETFGAKEDLGEVVFSKISSFSQVS-EKKSSYSPKDFLIKRSENVLEVPRAEKKA----- 74
Query: 89 RERLVFLRACDMNAVKRIDQIYLGNGASNDFFYTKTRKKTKFVVVGCSKTFRNCFCVSMG 148
+ +++CD+ + +D L + D FYT R+ T FV C++ FC S G
Sbjct: 75 ---VFGVKSCDLRGFQLMDLQIL----NKDPFYTVRRENTIFVNFVCNEMCPGGFCTSFG 127
Query: 149 TNKADNYDAAM-------NVRGNEIQLEIRD-----EDLNIFSGREIDFDIDYVTKNEFE 196
D +D + V+ +E + + ED N+FS F Y E
Sbjct: 128 GPVLDKFDIQVIHMDGRYFVQADEKYAKFLEGFKVSEDQNVFSKHSEAFLQHY---GRLE 184
Query: 197 VDLPEKVDFMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRV 256
++ EK + K+W+E+ CI+CG CNYSCPTC C + D + R++
Sbjct: 185 LNNIEK---RMKWSSKLWNEFANYCISCGACNYSCPTCYCIDVYD-------DETGRKKE 234
Query: 257 WASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGENMCVGCGRCDDMCPQYI 316
W SC ++G+T A G + R R+R + HK Y+ GE +C GC RC D CP I
Sbjct: 235 WDSCILEGFTRTAAG-NVRPDLSDRLRQRFYHKFKYYRLSKGEYLCTGCNRCVDDCPVDI 293
Query: 317 SISE 320
I E
Sbjct: 294 DIKE 297
>gi|78186974|ref|YP_375017.1| hydrogenase/sulfur reductase, beta subunit [Pelodictyon luteolum
DSM 273]
gi|78166876|gb|ABB23974.1| hydrogenase/sulfur reductase, beta subunit [Pelodictyon luteolum
DSM 273]
Length = 337
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 75/291 (25%), Positives = 125/291 (42%), Gaps = 33/291 (11%)
Query: 63 KEALLPVNEVLFYFTEDEYKVAAEDTR----ERLVF-LRACDMNAVKRIDQIYLGNGASN 117
KE P E + + + ++ E+ R R++F +R CD ++ D ++ + +
Sbjct: 57 KELFFPRTEPMLGYRIGKQQIETEEFRPPEGRRIIFGVRPCDAAGMQVDDALF--DWDYH 114
Query: 118 DFFYTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKADNYDAAMNVR----GNEIQLEIRDE 173
D ++ + R + V + C+ C C S+ + + + +R GN Q+E E
Sbjct: 115 DEYWFRRRDSSVIVSIACTHADDFCMCTSLNLSPDSTKGSDVLLRPLLAGNGWQVEALTE 174
Query: 174 DLNIFSGREIDFDIDYVTKNEFE-----VDLPEKVDFMYMQN---------HKMWDEYDT 219
G I + K + D+P K D ++ + W E
Sbjct: 175 -----RGENALASISSLLKEGGDPTAPVADVPVKFDLEACRSWLADPENFESRFWKEISE 229
Query: 220 RCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHG 279
RCI CG C Y CPTC CF +QD + + G RR+ W SC +T GH+ R
Sbjct: 230 RCIGCGSCTYLCPTCHCFDIQD---EGDTYKGIRRKNWDSCSFSLFTMHTSGHNPRATQS 286
Query: 280 QRMRFKTLHKIHDYKKRFGENMCVGCGRCDDMCPQYISISEAYEKVAHAMR 330
R R + +HK + + +F N C GCGRC CP + ++E + ++ R
Sbjct: 287 ARWRQRIMHKFNYFSLKFNVNSCTGCGRCTRECPVDMGVTETLQAISTLQR 337
>gi|67939787|ref|ZP_00532275.1| hydrogenase/sulfur reductase, beta subunit [Chlorobium
phaeobacteroides BS1]
gi|67913994|gb|EAM63354.1| hydrogenase/sulfur reductase, beta subunit [Chlorobium
phaeobacteroides BS1]
Length = 359
Score = 109 bits (273), Expect = 2e-22, Method: Composition-based stats.
Identities = 88/331 (26%), Positives = 163/331 (49%), Gaps = 39/331 (11%)
Query: 9 EFDRGLEELSKKYLILAPRTFE--KRGTYSDTDVVRYAKVNNFSEMNWE-DKSHFPAKEA 65
EF + ++ L ++ L AP+ + K G V ++ +V++ S++ ++ + AK
Sbjct: 10 EFRKFIDALVRQNLSYAPKEVDVDKNGE----PVYQFKEVSSVSDIAFDYSVTASSAKHF 65
Query: 66 LLPVNEVL--FYFTEDEYK--VAAEDTRERLVFLRACDMNAVKRIDQIYLGNGASNDFFY 121
L+P E L F FT+ +++ + E L+ LRACD++AV +D + L NG Y
Sbjct: 66 LMPFKEDLSRFTFTDKDWQQDITYEAQPIVLIGLRACDISAVTILDNVLL-NGQFPSPHY 124
Query: 122 TKTRKKTKFVVVGCSKTFRNCFCVSMG------------TNKADNYDAAMN-------VR 162
RK T F++ +CFC SM ++ D+Y ++N ++
Sbjct: 125 LARRKNT-FIIGMDHLPLPDCFCKSMNHHTVNDGFNLFCSDIGDSYYLSINSSKAFNYLK 183
Query: 163 GNEIQLEIRDEDLNIFSGREIDFDIDYVTKNEFEVD-LPEKVDFMYMQNHKMWDEYDTRC 221
EI ++D + R++ I + K E EV LP +D + + +W ++ +C
Sbjct: 184 EFEISDPTDEDDCKLIERRKL---IKHSFKTEVEVTGLPSFLDIEF--DSPIWTKWGDKC 238
Query: 222 IACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQR 281
+ CG C CPTC C++M+D + + +++++ SC + + +AG H+FR K+G R
Sbjct: 239 LNCGTCAMVCPTCYCYNMEDRPDTDLKGSARQKQLY-SCNLVDFAEVAGEHNFRPKNGDR 297
Query: 282 MRFKTLHKIHDYKKRFGENMCVGCGRCDDMC 312
++++ H + + + +CVGC RC C
Sbjct: 298 LKYRYYHHYLGFAENANQQICVGCNRCGRAC 328
>gi|68548768|ref|ZP_00588237.1| hydrogenase/sulfur reductase, beta subunit [Pelodictyon
phaeoclathratiforme BU-1]
gi|68244326|gb|EAN26518.1| hydrogenase/sulfur reductase, beta subunit [Pelodictyon
phaeoclathratiforme BU-1]
Length = 359
Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats.
Identities = 86/330 (26%), Positives = 156/330 (47%), Gaps = 29/330 (8%)
Query: 5 LSIEEFDRGLEELSKKYLILAPRTFEKRGTYSDTDVVRYAKVNNFSEMNWE-DKSHFPAK 63
+S EEF + + L + PR ++ + V ++ V + ++ ++ + AK
Sbjct: 6 ISKEEFTKFIGALVENNRSFGPREVDR--DHRGNPVYQFQPVQSARDIAFDYTATASSAK 63
Query: 64 EALLPVNEVL--FYFTEDEY--KVAAEDTRERLVFLRACDMNAVKRIDQIYLGNGASNDF 119
LP E L F F D++ ++A E T L+ LRACD++A+ +D + L NG
Sbjct: 64 HFFLPFREELSRFLFRGDDWEQQIAYEATPIVLIGLRACDISALNILDDVLL-NGHFPSP 122
Query: 120 FYTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKADN-YDAAMNVRGNEIQLEIRDED---- 174
+Y RK T FV+ +CFC SM + ++ + G+ L I
Sbjct: 123 YYLAKRKNT-FVIGMDHLPLPDCFCKSMNHHTVTTGFNLFCSDIGDHYYLSINSSKAFNF 181
Query: 175 LNIFSGREIDFDIDYV-------TKNEFEVD-----LPEKVDFMYMQNHKMWDEYDTRCI 222
L F R+ ++D + +N FE + LP +D + + +W+++ +C+
Sbjct: 182 LKEFETRDPNYDDNCALVERRKQIQNGFETEIDVTGLPTILDIEF--DSTVWEKWGNKCL 239
Query: 223 ACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRM 282
CG C CP+C C+S+ + + + + R + SC + + +AGGH+FR K+G R+
Sbjct: 240 NCGSCAMVCPSCYCYSVTE-SFDTSLKVASREKKLYSCNLVDFAVVAGGHNFRPKNGDRL 298
Query: 283 RFKTLHKIHDYKKRFGENMCVGCGRCDDMC 312
+++ H+ + + + +CVGC RC C
Sbjct: 299 KYRYYHQHRGFAENANQQICVGCNRCGRAC 328
>gi|18977701|ref|NP_579058.1| H-II hydrogenase subunit beta [Pyrococcus furiosus DSM 3638]
gi|7406954|gb|AAF61851.1|AF176650_1 sulfhydrogenase II subunit b [Pyrococcus furiosus]
gi|18893435|gb|AAL81453.1| H-II hydrogenase subunit beta [Pyrococcus furiosus DSM 3638]
Length = 334
Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats.
Identities = 86/309 (27%), Positives = 147/309 (47%), Gaps = 31/309 (10%)
Query: 42 RYAKVNNFSEMNWE-DKSHFPAKEALLPVNEVLFYFTEDEYKVAAEDTRERLVFLRACDM 100
R+ +VN+ E++ + ++ P K+ + + +F ++E D + L + +CD+
Sbjct: 35 RFEEVNSIDELSLDYTRTILPPKKFFIRPRDAMFKIQKNEVTEVDGDGKFVLFGVHSCDI 94
Query: 101 NAVKRIDQIYLGNGASNDFFYTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKA-DNYDAAM 159
+ +K +D++YL N D +Y + RK V + C CFC S+GT+ A D +D +
Sbjct: 95 HGIKILDKVYLSN--PPDPYYERRRKNAFIVGISCMPD-EYCFCKSLGTDFAMDGFDIFL 151
Query: 160 N------------VRGNEIQLEIRD-------EDLNIFSGREIDFDIDYVTKNEFEVDLP 200
+ V+G+E E +D EDL F E + K+ + L
Sbjct: 152 HELPDGWLVRVGSVKGHEFVWENQDIFDDVTEEDLRNFKEFE-EKRAKAFKKSLNKEGLA 210
Query: 201 EKVDFMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASC 260
+ +D + K+W +Y +C+ CG C CPTC C+ + D + E + R R + SC
Sbjct: 211 DILDLAFTS--KVWKKYAEKCLGCGNCTIVCPTCRCYEVCDTWVRAYEAL--RMRRYDSC 266
Query: 261 QVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGENMCVGCGRCDDMCPQYISISE 320
+ + +AGGH+FR R R + K + + G N CVGCGRCD+ CP I +
Sbjct: 267 FMPTHGLVAGGHNFRPTRLDRFRHRYYCKNY-FDPEAGFN-CVGCGRCDEFCPARIEHVK 324
Query: 321 AYEKVAHAM 329
++V +
Sbjct: 325 VLDEVREGL 333
>gi|67918391|ref|ZP_00511990.1| hydrogenase/sulfur reductase, beta subunit [Chlorobium limicola DSM
245]
gi|67784047|gb|EAM43427.1| hydrogenase/sulfur reductase, beta subunit [Chlorobium limicola DSM
245]
Length = 359
Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats.
Identities = 88/332 (26%), Positives = 155/332 (46%), Gaps = 33/332 (9%)
Query: 5 LSIEEFDRGLEELSKKYLILAPRTFEKRGTYSDTDVVRYAKVNNFSEMNWE-DKSHFPAK 63
+S EF R ++ L K PR ++ T V R+ V++ E++++ + AK
Sbjct: 6 ISKPEFRRFIDALVKANNSFGPRLADR--TADGKPVYRFMPVSSVDEIDFDYTATASSAK 63
Query: 64 EALLPVNEVL----FYFTEDEYKVAAEDTRERLVFLRACDMNAVKRIDQIYLGNGASNDF 119
LP +E L F+ ++ E A E L+ LRACD++A+ +D + L NG
Sbjct: 64 HFFLPFSEELSRFRFHGSDWEQHSAYEADPVVLIGLRACDISALNILDDVLL-NGNYPSP 122
Query: 120 FYTKTRKKTKFVVVGCSKTFRNCFCVSMGTNK-ADNYDAAMNVRGNEIQLEIRD------ 172
+Y RK T FV+ +CFC S+ + + ++ + G + L I
Sbjct: 123 YYLAKRKNT-FVIGLDHLPLPDCFCKSLAHHTVSTGFNLFCSDIGEKYYLSINSSKAFTY 181
Query: 173 -----------EDLNIFSGREIDFDIDYVTKNEFEV-DLPEKVDFMYMQNHKMWDEYDTR 220
ED + + R + K E +V LP +D + + +W+++ ++
Sbjct: 182 LKKFQTEDPSCEDNCLLTERRKLISDSF--KTEIDVTSLPSILDIEF--DSPVWEKWGSK 237
Query: 221 CIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQ 280
C+ CG C CPTC C+S+++ + + R R SC + + +AGGH+FR K+G
Sbjct: 238 CLNCGTCAMVCPTCYCYSLEE-RFDIDLKGASRNRKLYSCNLVDFAVVAGGHNFRPKNGD 296
Query: 281 RMRFKTLHKIHDYKKRFGENMCVGCGRCDDMC 312
R++++ H+ + + + +CVGC RC C
Sbjct: 297 RLKYRYYHQHRGFAENGNQQICVGCNRCGRAC 328
>gi|110598345|ref|ZP_01386619.1| 4Fe-4S ferredoxin, iron-sulfur binding [Chlorobium ferrooxidans DSM
13031]
gi|110340043|gb|EAT58544.1| 4Fe-4S ferredoxin, iron-sulfur binding [Chlorobium ferrooxidans DSM
13031]
Length = 337
Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats.
Identities = 76/283 (26%), Positives = 129/283 (45%), Gaps = 25/283 (8%)
Query: 63 KEALLPVNEVLFYFTEDEYKVAAED----TRERLVF-LRACDMNAVKRIDQIYLGNGASN 117
KE P +E + + + ++ ++ + R++F RACD + + ID G +
Sbjct: 57 KELFFPQSEPMLRYAITKAEINTDEFLPPSGPRIIFGARACDASGLA-IDDPLFGWDYKD 115
Query: 118 DFFYTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKADNYDAAMNVRGNEIQLEIRDEDLNI 177
++++ + R ++ V + C+K C C S+ + + + +R E + E+L
Sbjct: 116 EYWFQR-RNESVIVTIACTKADEFCMCTSLKLSPDSTKGSDILLRPLENNKGWQVEELTD 174
Query: 178 FSGREI-----DFDIDYVTKNEFEVDLPEKVDF----MYMQN-----HKMWDEYDTRCIA 223
GRE D + V +PEK + +++N + W E RCI
Sbjct: 175 -RGREAFKSVADLLQEGSDPAAATVTVPEKFNADACAEWLKNPENFESRFWKEISARCIG 233
Query: 224 CGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMR 283
CG C Y CPTC CF +QD + G RR+ W SC +T GH+ R R R
Sbjct: 234 CGSCTYLCPTCHCFDIQD---EGGSFEGIRRKNWDSCSFALFTMHTSGHNPRSTQSARWR 290
Query: 284 FKTLHKIHDYKKRFGENMCVGCGRCDDMCPQYISISEAYEKVA 326
+ +HK + + +F N C GCGRC CP + I+E ++++
Sbjct: 291 QRIMHKFNYFPGKFSANSCSGCGRCTRECPVDMGITETLQEIS 333
>gi|78189526|ref|YP_379864.1| hydrogenase/sulfur reductase, beta subunit [Chlorobium
chlorochromatii CaD3]
gi|78171725|gb|ABB28821.1| hydrogenase/sulfur reductase, beta subunit [Chlorobium
chlorochromatii CaD3]
Length = 359
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 71/275 (25%), Positives = 135/275 (49%), Gaps = 32/275 (11%)
Query: 62 AKEALLPVNEVLFYFT----EDEYKVAAEDTRERLVFLRACDMNAVKRIDQIYLGNGASN 117
AK LP E L +FT E + +A E L+ LRACD++A+ +D++ L + +
Sbjct: 62 AKHFFLPFREELSHFTFHGKEWDQHIAYETNPIVLIGLRACDISALNILDEVLLHSHFPS 121
Query: 118 DFFYTKTRKKTKFVVVGCSKTFRNCFCVSMG------------TNKADNYDAAMN----- 160
++ R+K FV+ +CFC SM ++ D+Y A+N
Sbjct: 122 PYYLA--RRKNSFVIGMDHLPLPDCFCKSMNHHVVTSGFNLFCSDIGDDYYLAINSSKAF 179
Query: 161 --VRGNEIQLEIRDEDLNIFSGREIDFDIDYVTKNEFEVD-LPEKVDFMYMQNHKMWDEY 217
++ E + D++ + R++ I + E +V LP +D + + +W+++
Sbjct: 180 NYLKSFETREPTYDDNCRLTERRKL---IQRSFQTEIDVTALPSILDIEF--DSPVWEKW 234
Query: 218 DTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVK 277
++C+ CG C CP+C C+++ + + + +R + SC + + +AGGH+FR K
Sbjct: 235 GSKCLNCGTCAMVCPSCYCYALSET-FDLDLQGAKREKQLYSCNLVDFAAVAGGHNFRPK 293
Query: 278 HGQRMRFKTLHKIHDYKKRFGENMCVGCGRCDDMC 312
+G R++++ H+ + + + +CVGC RC C
Sbjct: 294 NGDRLKYRYYHQHRGFAENGNQQICVGCNRCGRAC 328
>gi|120601878|ref|YP_966278.1| hydrogenase, putative [Desulfovibrio vulgaris subsp. vulgaris DP4]
gi|120562107|gb|ABM27851.1| hydrogenase, putative [Desulfovibrio vulgaris subsp. vulgaris DP4]
Length = 359
Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats.
Identities = 87/315 (27%), Positives = 121/315 (38%), Gaps = 43/315 (13%)
Query: 57 KSHFPAKEALLPVNEVLFYFTEDEYKV----------AAEDTRERLVFL-RACDMNAVKR 105
++ P K + P +E LF F ++ A D L+F R CD
Sbjct: 50 RATVPPKGIIFPQSERLFAFIREKDPNDPGHTTVRLDATADIPPALIFGGRPCDARGFHI 109
Query: 106 IDQIYLGNGASNDFFYTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKADNY--DAAMN-VR 162
D++YL NG D +Y R T V + C+K CFC G AD D M V
Sbjct: 110 FDRVYL-NGPHRDPYYAARRDATVVVTLACAKPCATCFCHWTGCGPADTTGSDILMTPVE 168
Query: 163 GNEIQLEIRDEDLNIFSGREI-DFDIDYVTKNE---------FEVDLP------------ 200
G + + ++ G + + D VT E E P
Sbjct: 169 GGFVAQAVTPRGQDVLEGASLPEAGADRVTAAEAVHTATLSALEAQNPAPDLSTTPRRLR 228
Query: 201 EKVDFMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASC 260
E+ D + W +C+ACG C Y CPTC CF++ D + + G R R W +C
Sbjct: 229 ERFD-----DSGFWRAMSDKCLACGACTYLCPTCYCFNITDENDGGDGMRGRRLRSWDNC 283
Query: 261 QVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRF-GENMCVGCGRCDDMCPQYISIS 319
+T A GH+ R+ R+R + HK Y G C GCGRC CP + I
Sbjct: 284 MSSLFTREASGHNPRMGKALRLRNRVGHKFSYYPDLHEGIVSCNGCGRCITGCPVSVDIR 343
Query: 320 EAYEKVAHAMREKDN 334
E + E N
Sbjct: 344 EMVVRATEPSEETPN 358
>gi|21674072|ref|NP_662137.1| hydrogenase/sulfur reductase, beta subunit [Chlorobium tepidum TLS]
gi|21647225|gb|AAM72479.1| hydrogenase/sulfur reductase, beta subunit [Chlorobium tepidum TLS]
Length = 337
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 73/286 (25%), Positives = 135/286 (47%), Gaps = 23/286 (8%)
Query: 63 KEALLPVNEVLFYFTEDEYKVAAEDT----RERLVF-LRACDMNAVKRIDQIYLGNGASN 117
K+ P E L + + ++ +E ++R+ F +R CD + + ID G +
Sbjct: 57 KDQFFPQTEPLIKYRIGKQQIDSETMTPPEKKRVFFGVRPCDASGLA-IDDPLFGWDYKD 115
Query: 118 DFFYTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKADNYDAAMNVR----GNEIQLE-IRD 172
D+++ + R+K+ V + C++ C C S+ + A + +R G+ Q+E + D
Sbjct: 116 DYWFRR-REKSVIVTIACAQADDFCMCTSVKLSPDSTKGADVMLRPLSDGSGWQVEAVSD 174
Query: 173 EDLNIFSG-----REIDFDIDYVTKNEFEVDLPEKVDFMYMQNH---KMWDEYDTRCIAC 224
+ +E + V + + D+ + ++++ + + + W + RC+ C
Sbjct: 175 RGTALVDTVSSLLQESSAEAAPVPQVAEKFDVEKVMEWLADKENFESQFWKDIALRCVGC 234
Query: 225 GRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRF 284
G C + CPTC CF +QD + + G RR+ W SC +T GH+ R R R
Sbjct: 235 GSCTFLCPTCHCFDIQD---EGDTYQGIRRKNWDSCSFPLFTMHTSGHNPRNTQSTRWRQ 291
Query: 285 KTLHKIHDYKKRFGENMCVGCGRCDDMCPQYISISEAYEKVAHAMR 330
+ +HK + Y+ +FG N C GCGRC CP + I+E + + + R
Sbjct: 292 RIMHKFNYYRGKFGVNSCSGCGRCTRQCPVDMGITETLQAITNLPR 337
>gi|118470838|ref|YP_888220.1| [NiFe] hydrogenase, beta subunit, putative [Mycobacterium smegmatis
str. MC2 155]
gi|118172125|gb|ABK73021.1| [NiFe] hydrogenase, beta subunit, putative [Mycobacterium smegmatis
str. MC2 155]
Length = 361
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 77/275 (28%), Positives = 120/275 (43%), Gaps = 33/275 (12%)
Query: 84 AAEDTRERLVFLRACDMNAVKRIDQIYLGNGASNDFFYTKTRKKTKFVVVGCSKTFRNCF 143
A E R + +RACD+ A+ +++ + LG G D + ++ V V C++ CF
Sbjct: 94 APEPPRYAFIGVRACDLAAINKLNGV-LGEGEYADRGFVGRLRRAFIVAVNCTEPGGLCF 152
Query: 144 CVSMGTNK--ADNYDAAMNVR----GNEIQLEIRDEDLNIFSGREIDFDIDYVTKNEFEV 197
C SMGT YD A+ R G +E ++ G E+ + + + E+
Sbjct: 153 CASMGTGPHLGPGYDLALTERLDGDGPHYLVETGSDE-----GEEVLDTLPHRAAVQAEI 207
Query: 198 D----------------LPE---KVDFMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCFS 238
D +P+ + + + W+E ++C+ CG C CPTC C S
Sbjct: 208 DSAETAIAAAAEHMGRAMPDGDLRELLIESRESPHWNEVASQCLTCGNCTMVCPTCFCTS 267
Query: 239 MQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFG 298
++D+ E+ ER WASC +T I G + R R R HK+ + +FG
Sbjct: 268 VEDVTDLTGEH-AERWMNWASCFEMDFTFIHEG-TVRQSAPSRYRHWITHKLGTWHDQFG 325
Query: 299 ENMCVGCGRCDDMCPQYISISEAYEKVAHAMREKD 333
CVGCGRC CP I I+E +A + D
Sbjct: 326 TTGCVGCGRCIAWCPTGIDITEEMATLADLAGDHD 360
>gi|94264772|ref|ZP_01288550.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
MLMS-1]
gi|93454761|gb|EAT05016.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
MLMS-1]
Length = 348
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 76/283 (26%), Positives = 125/283 (44%), Gaps = 45/283 (15%)
Query: 63 KEALLPVNEVLFYFTEDE-----YKVAAEDTRERLVF-LRACDMNAVKRIDQIYLGNGAS 116
K+ L P E LF + D+ + A +T L F +R CD+NAV +D ++L
Sbjct: 60 KDFLFPQREHLFDYRVDKKGNYSFTPVAAETEPTLFFAVRPCDLNAVLYLDVVFLPGRRE 119
Query: 117 NDFFYTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKADNYDAAMNVRGNEIQLEIRDEDLN 176
Y + R + + + C++ F +CFC++ G+ G ++QL ED
Sbjct: 120 PR--YRQRRDNSLLIGLNCNQPFADCFCLATGS-------GPFQEEGADLQLTDLGEDFL 170
Query: 177 IFSGREIDFDI------------DYVTKNEFEVDLPEKVDFMYMQNH------------- 211
+ GR ++ + + F++ L + F Q H
Sbjct: 171 VEVGRARGAEVIAAYPHFFRPAGEEQRQRRFQLFLEARSGFA-RQVHVEQAVKRLAEDRV 229
Query: 212 --KMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVDGYTNIA 269
+W+E RC C C + CPTC+CF++ D ++ + G R R W +C G+T +A
Sbjct: 230 PPGVWEELAGRCQDCNGCAFLCPTCSCFTVVD--QPQSASRGRRLRHWDACTAQGFTAMA 287
Query: 270 GGHSFRVKHGQRMRFKTLHKIHDYKKRFGENMCVGCGRCDDMC 312
GGH+ ++R + +HK+ +R G CVGCGRC C
Sbjct: 288 GGHNPVAPQRDKLRQRFMHKLAHDVRRHGRPSCVGCGRCVGAC 330
>gi|88811672|ref|ZP_01126926.1| cytochrome c3 hydrogenase alpha (or beta) chain [Nitrococcus
mobilis Nb-231]
gi|88791063|gb|EAR22176.1| cytochrome c3 hydrogenase alpha (or beta) chain [Nitrococcus
mobilis Nb-231]
Length = 378
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 83/272 (30%), Positives = 121/272 (44%), Gaps = 40/272 (14%)
Query: 79 DEYKVAAEDT---RERLVFLRACDMNAVKRIDQIYLGNGASNDFFYTKTRKKTKFVVVGC 135
D+ ++ ED R+ + +RAC++NA+ D+++LG G D Y R+ V V C
Sbjct: 102 DDMRIIDEDDEPPRDAFIGVRACELNAIAIQDKVFLG-GPYVDPHYRSRREGIFVVAVNC 160
Query: 136 SKTFRNCFCVSMGTNK--ADNYDAAMNVR------------GNEIQLEIRDE-------D 174
+ CFC SMGT +D A+ G ++ ++ E
Sbjct: 161 AVAGGTCFCASMGTGPRVGSGFDLALTEIVHDGAHRFLVECGTDVGAQVLTELPHRPAPP 220
Query: 175 LNIFSGREIDFDIDYVTKNEFEVDLPEK-VDFMYMQN--HKMWDEYDTRCIACGRCNYSC 231
+I + R I I+ T ++P V + +N H WD RC+ CG C C
Sbjct: 221 SDIEAARAI---IER-TAQSMGREMPATDVPALLRRNLEHSRWDNVAERCLTCGNCTMVC 276
Query: 232 PTCTCFSMQDIHYKENENMG---ERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLH 288
PTC C S++D E + G R R W SC ++ I GG S R R R H
Sbjct: 277 PTCFCTSVED----ETDLSGATAARTRRWDSCFTMDFSYIHGG-SVRSSTRARYRQWMTH 331
Query: 289 KIHDYKKRFGENMCVGCGRCDDMCPQYISISE 320
K+ + +FG + CVGCGRC CP I I+E
Sbjct: 332 KLSTWVDQFGTSGCVGCGRCISWCPVGIDITE 363
>gi|13540834|ref|NP_110522.1| Ferredoxin subunit of sulfhydrogenase II [Thermoplasma volcanium
GSS1]
gi|14324217|dbj|BAB59145.1| cytochrome c3 hydrogenase [sulfhydrogenase] beta subunit
[Thermoplasma volcanium GSS1]
Length = 306
Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats.
Identities = 83/307 (27%), Positives = 138/307 (44%), Gaps = 41/307 (13%)
Query: 27 RTFEKRGTYSDTDVVRYAKVNNFSEMNWEDKSHFPAKEALLPVNEVLFYFTEDEYKVAAE 86
+ F+ G+ + + + + FS+++ E+KS +P K+ L+ +E + E
Sbjct: 19 KDFQSFGSKEENGDIVFGDIQRFSDIS-EEKSSYPPKDFLIERSENILSIPRAE------ 71
Query: 87 DTRERLVF-LRACDMNAVKRIDQIYLGNGASNDFFYTKTRKKTKFVVVGCSKTFRNCFCV 145
+R VF +++CD+ +D+ LG D FYT R+ T F+ C K FC
Sbjct: 72 ---KRAVFGVKSCDLRGFYIMDKQILGK----DPFYTVKRENTMFINFVCEKMCSGGFCT 124
Query: 146 SMGTNKADNYDAAMNVRGNEIQLEIRD------------EDLNIFSGREIDFDIDYVTKN 193
S G D YD + + +E D +D N+F + +F+ Y N
Sbjct: 125 SFGGPVLDEYDVQVLHKNGYFYVEASDKYEKYLFGFSESDDQNVFEEHKKEFESLYGRLN 184
Query: 194 EFEVDLPEKVDFMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGER 253
+ ++ + +W+++ CI+CG CNYSCPT ++ R
Sbjct: 185 ------VDGIENRMKWSSNLWNKFANYCISCGACNYSCPT-------CYCVDVYDDDDGR 231
Query: 254 RRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGENMCVGCGRCDDMCP 313
++ W SC ++G+T A G + R + +R+R + HK YK G +C GC RC D CP
Sbjct: 232 KKEWDSCILEGFTRTAAG-NVRPELSERLRQRFYHKFKYYKLSRGAYLCTGCNRCVDDCP 290
Query: 314 QYISISE 320
I I E
Sbjct: 291 VDIDIKE 297
>gi|156107639|gb|EDO09384.1| hypothetical protein BACOVA_05245 [Bacteroides ovatus ATCC 8483]
Length = 337
Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats.
Identities = 77/308 (25%), Positives = 134/308 (43%), Gaps = 38/308 (12%)
Query: 39 DVVRYAKVNNFSEMNWED-KSHFPAKEALLPVNEVLFYFTEDEYKVAAEDTRERLV---- 93
D V + +V ++ E+ + ++ AK + P EVLF + +D + ++ ++
Sbjct: 33 DKVDFKRVTSYDEVATDYVQTTQSAKRFVFPKTEVLFSYQKDGKEATLQEADINVIPETI 92
Query: 94 --FLRACDMNAVKRIDQIYLGNGASNDFFYTKTRKKTKFVVVGCSKTFRNCFCVSMGTNK 151
+R CD + I+ N D Y R+K + C++ +CFC S+
Sbjct: 93 LWKIRPCDAAGFAPLSGIF--NWDYKDKLYNARREKMTLISFSCAQCDESCFCTSV---- 146
Query: 152 ADNYDAAMNVRGNEIQL-EIRDED--LNIFSGRE---IDFDI------DYVTKNEFEVDL 199
+ N G++IQ+ E+ D+ + + + + + F + + + K ++ +
Sbjct: 147 ---HGGPGNTVGSDIQITELPDQSALVEVLTAKGKALVKFFVKEYTPAEEIDKEQYLASV 203
Query: 200 PEKVDFMYMQ-------NHKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGE 252
P + + ++ + +W + RC+ CG C Y CPTC CF DI + G
Sbjct: 204 PTRFNVDNVREKLAGAFDSPVWKQQSERCLGCGACAYVCPTCACF---DIQEDAKGSSGH 260
Query: 253 RRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGENMCVGCGRCDDMC 312
R R W SC +T GH+ R R R + LHK +R E C GCGRC C
Sbjct: 261 RVRCWDSCGFSLFTLHTSGHNPRPTQSARWRQRILHKFSYMPERIQETGCTGCGRCSRAC 320
Query: 313 PQYISISE 320
P ++I E
Sbjct: 321 PVDMNILE 328
>gi|52548767|gb|AAU82616.1| ferredoxin [uncultured archaeon GZfos18F2]
Length = 347
Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats.
Identities = 90/343 (26%), Positives = 146/343 (42%), Gaps = 53/343 (15%)
Query: 13 GLEELSKKYLILAPRTFEKRGTYSDTDVVRYAKVNNFSEMNWED-------KSHFPAKEA 65
GLE L++ Y + P VR +NF E+ + + K
Sbjct: 14 GLENLNRDYRLFGP--------------VRENGCHNFKELGKTELPDLDYSNTRLSPKSI 59
Query: 66 LLPVNEVLFYFTED----EYKVAAEDTRE----RLVFLRACDMNAVKRIDQIYLGNGASN 117
+ P +EV+F ++ D +Y V E ++ ++ +R CD A + + +
Sbjct: 60 IHPQSEVMFEYSLDKGSKDYHVLKETDKDYSPCAIIGIRPCDAAAFLIVRRNF-DTAECK 118
Query: 118 DFFYTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKADN--YDAAMNVRGNEIQLEI---RD 172
D ++ + T FV + C+ CFC + + D D + G+ +I +
Sbjct: 119 DPYWVNAYEATTFVGLACNNPSSTCFCTTADSGPFDEKGLDLLLVDAGDHFIAKIISSKG 178
Query: 173 EDLNIFSGREIDFDIDY------VTKNEFEVDLPEKVDFMYMQNHKMWDEYDT------- 219
EDL +G + D+D + K E E + V +++ D +D
Sbjct: 179 EDLIEKAGWDPGPDVDASADRIKIMKQEAEAKIRSFVATDKLKDKTTTDLFDAPFWEDVA 238
Query: 220 -RCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKH 278
CI CG C Y CPTC CF +QD + + G R R W SC +T GH+ R
Sbjct: 239 FACINCGTCTYVCPTCWCFDIQDEIFGRS---GIRMRNWDSCMYPLFTLHGSGHNPRSAR 295
Query: 279 GQRMRFKTLHKIHDYKKRFGENM-CVGCGRCDDMCPQYISISE 320
QR+R + +HK+ Y ++G+ + CVGCGRC +CP I I +
Sbjct: 296 MQRVRQRFMHKLKYYVDKYGDGIQCVGCGRCVRLCPVNIDIRK 338
>gi|144900808|emb|CAM77672.1| 4Fe-4S ferredoxin, iron-sulfur binding [Magnetospirillum
gryphiswaldense MSR-1]
Length = 376
Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats.
Identities = 73/250 (29%), Positives = 110/250 (44%), Gaps = 35/250 (14%)
Query: 95 LRACDMNAVKRIDQIYLGNGASNDFFYTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKADN 154
+RAC++ A+ R +++ G+ D Y + V V C + CFC SMGT
Sbjct: 127 VRACELAAIARQAKVF-GDRDFADPGYQRRLADALIVAVQCGEALETCFCASMGTGP--- 182
Query: 155 YDAAMNVRGN-EIQL-EIRDEDLNIF-------------------SGREIDFDIDYVTKN 193
V+G +I+L E+ D++ ++F S +I V
Sbjct: 183 -----EVKGGFDIKLTEVIDKNRHVFVAEAGTPRGAKLLKAAKPASQADIKAAAQVVKNA 237
Query: 194 EFE---VDLPEKVDFMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENM 250
E + +D H WD+ RC+ CG C CPTC C +++D+ + +N
Sbjct: 238 ETQQKHLDPAAARALAANPEHPRWDQVAARCLTCGNCTMVCPTCFCTTVEDVTDLKGDN- 296
Query: 251 GERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGENMCVGCGRCDD 310
ER R W SC ++ I GG + R + R R HK+ + +F E CVGCGRC
Sbjct: 297 AERWRKWDSCFTSDFSYIHGG-AVRTETRSRYRQWITHKLSTWVDQFDETGCVGCGRCIT 355
Query: 311 MCPQYISISE 320
CP I I+E
Sbjct: 356 WCPVGIDITE 365
>gi|46580805|ref|YP_011613.1| hydrogenase, putative [Desulfovibrio vulgaris subsp. vulgaris str.
Hildenborough]
gi|46450225|gb|AAS96873.1| hydrogenase, putative [Desulfovibrio vulgaris subsp. vulgaris str.
Hildenborough]
Length = 360
Score = 104 bits (260), Expect = 7e-21, Method: Composition-based stats.
Identities = 86/315 (27%), Positives = 119/315 (37%), Gaps = 43/315 (13%)
Query: 57 KSHFPAKEALLPVNEVLFYFTEDEYKV----------AAEDTRERLVFL-RACDMNAVKR 105
++ P K + P +E LF F ++ A D L+F R CD
Sbjct: 51 RATVPPKGIIFPQSERLFAFIREKDPNDPGHTTVRLDATADIPPALIFGGRPCDARGFHI 110
Query: 106 IDQIYLGNGASNDFFYTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKADNY--DAAMN-VR 162
D++YL NG D +Y R T V + C+K CFC G AD D M V
Sbjct: 111 FDRVYL-NGPHRDPYYAARRDATVVVTLACAKPCSTCFCHWTGCGPADTTGSDILMTPVE 169
Query: 163 GNEIQLEIRDEDLNIFSGREI-DFDIDYVTKNE---------FEVDLP------------ 200
G + + + G + + D V E E P
Sbjct: 170 GGFVAQAVTPRGQEVLEGASLPEAGADRVMAAEAVHTATLSALEAQNPAPDLSTTPRRLR 229
Query: 201 EKVDFMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASC 260
E+ D + W +C+ACG C Y CPTC CF++ D + + G R R W +C
Sbjct: 230 ERFD-----DSGFWRAMSDKCLACGACTYLCPTCYCFNITDENDGGDGMRGRRLRSWDNC 284
Query: 261 QVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRF-GENMCVGCGRCDDMCPQYISIS 319
+T A GH+ R+ R+R + HK Y G C GCGRC CP + I
Sbjct: 285 MSSLFTREASGHNPRMGKALRLRNRVGHKFSYYPDLHEGIVSCNGCGRCITGCPVSVDIR 344
Query: 320 EAYEKVAHAMREKDN 334
E + E N
Sbjct: 345 EMVVRATEPSEETPN 359
>gi|86743175|ref|YP_483575.1| 4Fe-4S ferredoxin, iron-sulfur binding [Frankia sp. CcI3]
gi|86570037|gb|ABD13846.1| 4Fe-4S ferredoxin, iron-sulfur binding [Frankia sp. CcI3]
Length = 395
Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats.
Identities = 79/253 (31%), Positives = 113/253 (44%), Gaps = 24/253 (9%)
Query: 89 RERLVFL--RACDMNAVKRIDQIYLGNGASNDFFYTKTRKKTKFVVVGCSKTFRNCFCVS 146
R + FL R+C++ A+ D+I LG G D Y R V V C + CFCVS
Sbjct: 130 RAAVAFLDVRSCELQAIATQDRILLG-GRHADRDYAARRSDVFIVAVNCHEPGGTCFCVS 188
Query: 147 MGTNKA--DNYDAAMN-VRGNEIQLEIRD------EDLNIFSGR--EIDFDIDYVTKNEF 195
M T A + YD ++ V + +L + E L +GR E +
Sbjct: 189 MNTGPAVREGYDLVLSEVLAGDHRLLVEAGTPRGVEILGELAGRPGEAADRSAAQAAVDG 248
Query: 196 EVD-LPEKVDFMYMQN-------HKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKEN 247
D + VD +++ H WDE RC++CG C CPTC C S++D+
Sbjct: 249 AADRMGRTVDAADLRDLLADNLEHPRWDEVAQRCLSCGNCTMVCPTCFCTSVEDVS-DLT 307
Query: 248 ENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGENMCVGCGR 307
+ ER R W SC ++ + GG + R R R HK + +FG + CVGCGR
Sbjct: 308 GSEAERWRSWESCFSLDHSYLHGG-NVRASGRSRYRQWLTHKFGTWHDQFGTSGCVGCGR 366
Query: 308 CDDMCPQYISISE 320
C CP I ++E
Sbjct: 367 CITWCPVGIDVTE 379
>gi|74317278|ref|YP_315018.1| hypothetical protein Tbd_1260 [Thiobacillus denitrificans ATCC
25259]
gi|74056773|gb|AAZ97213.1| conserved hypothetical protein [Thiobacillus denitrificans ATCC
25259]
Length = 373
Score = 104 bits (259), Expect = 9e-21, Method: Composition-based stats.
Identities = 75/258 (29%), Positives = 111/258 (43%), Gaps = 23/258 (8%)
Query: 83 VAAEDTRERLVFLRACDMNAVKRIDQIYLGNGASNDFFYTKTRKKTKFVVVGCSKTFRNC 142
V + ++ L+ +RACD+ A+ D +L G D Y R V V C++ C
Sbjct: 111 VTVDAPKQALIGVRACDLAALAIQDTHFL-RGGRVDAHYAARRAALFLVAVQCAEPAATC 169
Query: 143 FCVSMGT--NKADNYDAAMNVRGNEIQLEIRDEDLN-IFSGREI----DFDIDYV-TKNE 194
FC S G YD A+ +E E +F G + D + V T+ E
Sbjct: 170 FCASTGDGPTPVTGYDLALAELAEGFVVEAGSEKGQAVFDGLNLPPASDAQLASVRTQGE 229
Query: 195 FEV-----DLPEKV---DFMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKE 246
LP M +H WD+ RC+AC C CPTC C + D
Sbjct: 230 AAAAAQTRSLPAAALHGALMSRLDHPRWDDVAARCLACTNCTLVCPTCFCHAEVD-EVAV 288
Query: 247 NENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKT--LHKIHDYKKRFGENMCVG 304
+ + E RVW SC + + ++ H F V+ R R++ HK+ + +FG + CVG
Sbjct: 289 DGDTTEHARVWDSCFGEAHGHL---HGFNVRPDVRTRYRQWLTHKLDTWHDQFGRSGCVG 345
Query: 305 CGRCDDMCPQYISISEAY 322
CGRC CP I ++E +
Sbjct: 346 CGRCIAWCPAGIDLTEEF 363
>gi|148263197|ref|YP_001229903.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Geobacter
uraniumreducens Rf4]
gi|146396697|gb|ABQ25330.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Geobacter
uraniumreducens Rf4]
Length = 327
Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 80/331 (24%), Positives = 141/331 (42%), Gaps = 22/331 (6%)
Query: 5 LSIEEFDRGLEELSKKYLILAPRTFEKRGTYSDTDVVRYAKVNNFSEMNWE-DKSHFPAK 63
L+ E F LEEL++ I P T ++ V + + + S++ + ++ P K
Sbjct: 6 LANESFQSFLEELTQFGAIHGP-------TLTEDGVPAFTTIASSSDLRLDYRRTLIPPK 58
Query: 64 EALLPVNEVLFYFTED-EYKVAAEDTRERLVF-LRACDMNAVKRIDQIYLGNGASNDFFY 121
+ L P L F Y T E ++F L CD+ A+ +D+++ + D Y
Sbjct: 59 KYLFPPRTPLLNFAPGCGYSRPVVATGEIILFGLHPCDLAAISYLDRVFTQD--RPDPLY 116
Query: 122 TKTRKKTKFVVVGCSKTFRNCFCVSMGTNKADNYDAAMNVRGNEIQLEIRDEDLNIFSGR 181
R + + C CFC MGT+ N+D + L S
Sbjct: 117 RARRNALTLIGLSCEAD-EFCFCGEMGTDVPVNFDIYLEKVEGGFCLRQGSPRGKTISSG 175
Query: 182 EIDFDIDYVTKNEFEVDLPEKVDFMYMQNHK--------MWDEYDTRCIACGRCNYSCPT 233
T + + + D + + +WD++ RC++CG C+ CPT
Sbjct: 176 LSSLSEGPETAAPLQTRMAKVADRIRKAAERQETFPKSPLWDDFADRCLSCGACSLCCPT 235
Query: 234 CTCFSMQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDY 293
C C +++ + + +R + W +C + IAGG++FR +R R++ +HK +
Sbjct: 236 CYCLDIRE-YGDLDGRTAQRIQEWDNCLFKSHGEIAGGYNFRKTRQERFRYRFIHKYLGF 294
Query: 294 KKRFGENMCVGCGRCDDMCPQYISISEAYEK 324
G CVGCGRC ++CP I + E +++
Sbjct: 295 GPLRGVVSCVGCGRCREVCPVKIDLQELFQQ 325
>gi|14521154|ref|NP_126629.1| hydrogenase (cytochrome-c3 hydrogenase beta chain) [Pyrococcus
abyssi GE5]
gi|5458372|emb|CAB49860.1| Sulfhydrogenase II, beta chain [Pyrococcus abyssi GE5]
Length = 334
Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats.
Identities = 91/349 (26%), Positives = 161/349 (46%), Gaps = 41/349 (11%)
Query: 3 LRLSIEEFDRGLEELSKKYLILAPRTFEKRGTYSDTDVVRYAKVNNFSEMNWE-DKSHFP 61
++L +E F E L + I AP + ++ +V SE++ ++ P
Sbjct: 4 VKLPVENFQEFFERLKEIGKIYAP--------VRHNSIYKFEEVQELSEVSLNYTRTILP 55
Query: 62 AKEALLPVNEVLFYFTEDEYKVAAEDTRERLVFLRACDMNAVKRIDQIYLGNGASNDFFY 121
K+ + + + +E+ + + L + +CD++A+K +D+ YL A Y
Sbjct: 56 PKKFFVKPRDPMSKLKGEEWIEIKDGEKFVLFGVHSCDIHALKILDKAYLSEPADP---Y 112
Query: 122 TKTRKKTKFVVVGCSKTFRNCFCVSMGTNKA-DNYDAAM------------NVRGNEIQL 168
KTR++ F+V CFC S+GT+ A D +D + +++G+E+
Sbjct: 113 YKTRRENAFIVGISCMPDEYCFCKSLGTHFAMDGFDLFLHELPDGWLVRVGSIKGHEVVW 172
Query: 169 -------EIRDEDLNIFSGREIDFDIDYVTKNEFEVD-LPEKVDFMYMQNHKMWDEYDTR 220
++ +EDL F +E + K E + L + +D + + K+W +Y +
Sbjct: 173 KNQELFEDVTEEDLKNF--KEFEERRAKSFKRELSKEGLADILDLAF--DSKVWRKYADK 228
Query: 221 CIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQ 280
C+ CG C CPTC C+ + D + E++ RR + SC + + +AGGH+FR
Sbjct: 229 CLGCGNCTLVCPTCRCYEVCDNWIRAYESVRVRR--YDSCFMVTHGLVAGGHNFRPTRLD 286
Query: 281 RMRFKTLHKIHDYKKRFGENMCVGCGRCDDMCPQYISISEAYEKVAHAM 329
R R + K + + G N CVGCGRCD+ CP I + E+V +
Sbjct: 287 RFRHRYYCKSY-FDPSSGFN-CVGCGRCDEFCPAGIEHVKVLEEVREGL 333
>gi|21674703|ref|NP_662768.1| hydrogenase/sulfur reductase, beta subunit [Chlorobium tepidum TLS]
gi|21647911|gb|AAM73110.1| hydrogenase/sulfur reductase, beta subunit [Chlorobium tepidum TLS]
Length = 359
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 85/338 (25%), Positives = 153/338 (45%), Gaps = 45/338 (13%)
Query: 5 LSIEEFDRGLEELSKKYLILAPRTFEKRGTYSDTD-----VVRYAKVNNFSEMNWE-DKS 58
+S +EF ++ L + PR DTD + ++ V++ SE+ ++ +
Sbjct: 6 ISKDEFRNFVDALVRANTSYGPRQV-------DTDRNGEPIYQFMPVSSASEIAFDYTVT 58
Query: 59 HFPAKEALLPVNEVL--FYFTEDEY--KVAAEDTRERLVFLRACDMNAVKRIDQIYLGNG 114
AK L+P E L F F + ++ +V + LV LR CD+NA+ +D++ L
Sbjct: 59 TSSAKHFLMPFREELSKFSFRDGDWDQEVKYDAPPIVLVGLRPCDINAINILDEVMLKGP 118
Query: 115 ASNDFFYTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKAD------------------NYD 156
+ ++ R+K F++ +CFC SM + D N
Sbjct: 119 YPSPYYLA--RRKNTFIIGMDHLPLPDCFCRSMNRHTTDHGFNLFASDIGESYFLSINSS 176
Query: 157 AAMN-VRGNEIQLEIRDEDLNIFSGREIDFDIDYVTKNEFEVD-LPEKVDFMYMQNHKMW 214
A N ++ E ++D + R++ I K EV LP +D + + +W
Sbjct: 177 KAFNFLKEFETTEPTEEDDCKLIERRKL---IKQSFKTNVEVTGLPVFLDLEF--DSPIW 231
Query: 215 DEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSF 274
++ +C+ CG C CPTC C+++++ H++ N R+R SC + + + GGH+F
Sbjct: 232 KKWGDKCLNCGSCAMVCPTCYCYNVEE-HFETNLESSSRQRRLYSCNLIDFAEVTGGHNF 290
Query: 275 RVKHGQRMRFKTLHKIHDYKKRFGENMCVGCGRCDDMC 312
R K+G R++++ H + + +CVGC RC C
Sbjct: 291 RPKNGDRLKYRYYHHYRGFAVNDNQQICVGCNRCGRAC 328
>gi|118581196|ref|YP_902446.1| putative anaerobic sulfite reductase, A subunit [Pelobacter
propionicus DSM 2379]
gi|118581205|ref|YP_902455.1| putative anaerobic sulfite reductase, A subunit [Pelobacter
propionicus DSM 2379]
gi|118503906|gb|ABL00389.1| putative anaerobic sulfite reductase, A subunit [Pelobacter
propionicus DSM 2379]
gi|118503915|gb|ABL00398.1| putative anaerobic sulfite reductase, A subunit [Pelobacter
propionicus DSM 2379]
Length = 360
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 99/368 (26%), Positives = 154/368 (41%), Gaps = 83/368 (22%)
Query: 21 YLILAPRTFEKRGTYSDTDVVRYAKVNNFSEMNWE-DKSHFPAKEALLPVNEVLFYFTED 79
+ +LAP F RG+ S DVV A N ++ ++PAK + P E ED
Sbjct: 23 FEVLAP--FLGRGSDSAFDVVTDA---NRDQVQLHVPNPYYPAKRFVFPHMERTMKIHED 77
Query: 80 EYKVAAE-----DTRERLVF-LRACDMNAVKRIDQIYLGNGASNDFFYTKTRKKTKFVV- 132
+ K + D +R +F +R+CD+ + +D+ +LG + Y + ++ F+V
Sbjct: 78 KSKNSLSFEPTVDAPKRALFGVRSCDVRGIYHLDRFFLGRDFKDG--YHEAKRNNLFIVN 135
Query: 133 VGCSKT----FRNCFCVSMGTNKA--DNYDAAMNVRGNEIQLEI---------------- 170
C+ + CFC+ + A +N+D + GN+ + +
Sbjct: 136 FACTDKDLDIGKQCFCLCTDSGPAARENFDLQLMDLGNDEYMAVAGSPAGEALFAAPFYK 195
Query: 171 ---------RDEDLNI-----------FSGREIDFDIDYVTKNEFEVDLPEKVDFMYMQN 210
R E L FSG + YVT N +
Sbjct: 196 KCTAGHVTKRAEVLEAARTELKDATTWFSGA-----VRYVTGNRV--------------S 236
Query: 211 HKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVDGYTNIAG 270
+K W E RC+ CG C + CP CTCF++ D E ER +VW +C G+T +AG
Sbjct: 237 NKTWTEIGNRCVECGGCTFVCPACTCFTVTDRKIGPTEI--ERLKVWDACAFSGFTRMAG 294
Query: 271 GHSFR-VKHGQRMR--FKTLHKIHDYKKRFGENMCVGCGRCDDMCPQYISISEAYEKVAH 327
GH+ R H +R R F+ LH H + +R C+GCGRC +C I + E +
Sbjct: 295 GHNPRQAVHDRRNRRFFRKLH--HYFIQRELSVACIGCGRCAVVCHGDIGMPSVVEMIRR 352
Query: 328 AMREKDNE 335
A E D +
Sbjct: 353 ATTESDKQ 360
>gi|145219648|ref|YP_001130357.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
[Prosthecochloris vibrioformis DSM 265]
gi|145205812|gb|ABP36855.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
[Prosthecochloris vibrioformis DSM 265]
Length = 337
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 74/291 (25%), Positives = 126/291 (43%), Gaps = 41/291 (14%)
Query: 63 KEALLPVNEVLFYFTEDEYKVAAED----TRERLVF-LRACDMNAVKRIDQIYLGNGASN 117
KE P E +F ++ + K+ + ++F R CD + D+++ N
Sbjct: 57 KELFFPRTEPMFSYSIGKQKIETGEFLPSENPCIIFGARPCDAAGMAIDDELF--NWDYR 114
Query: 118 DFFYTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKADNYDAAMNVRGNEIQLE-------I 170
D ++ + R ++ + + C ++ C C S+G A + +G+++ L
Sbjct: 115 DEYWFRRRDRSVIMTIACKESDDFCMCTSLGL-------APDSAKGSDVLLRPLASGNGW 167
Query: 171 RDEDLNIFSGREIDFDIDYVTKNEFEVDLPE-KVDFMY--------------MQNHKMWD 215
R E+L G+ + I + K E P +V ++ ++H W
Sbjct: 168 RVEELTPKGGKALQ-PIASLLKEGSEAAAPTAEVPLLFDLEACTTWLADPENFESH-FWK 225
Query: 216 EYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFR 275
E RCI CG C Y CPTC CF +QD + + G RR+ W SC +T GH+ R
Sbjct: 226 EISERCIGCGTCTYLCPTCHCFDIQD---EGDTYEGIRRKNWDSCSFKLFTMHTSGHNPR 282
Query: 276 VKHGQRMRFKTLHKIHDYKKRFGENMCVGCGRCDDMCPQYISISEAYEKVA 326
R R + +HK + + +F N C GCGRC CP + + E + ++
Sbjct: 283 ATQSARWRQRIMHKFNYFSDKFTVNSCTGCGRCTRECPVDMGVRETLQAIS 333
>gi|111017059|ref|YP_700031.1| probable ferredoxin [Rhodococcus sp. RHA1]
gi|110816589|gb|ABG91873.1| probable ferredoxin [Rhodococcus sp. RHA1]
Length = 385
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 78/283 (27%), Positives = 126/283 (44%), Gaps = 41/283 (14%)
Query: 85 AEDTRE-RLVFLRACDMNAVKRIDQIYLGNGASNDFFYTKTRKKTKFVVVG-CSKTFRNC 142
A D R V +R CD+ A+ + ++ + S+ T R + F+V C++ C
Sbjct: 111 AHDERPYAFVGIRGCDLAAISVLRRVLCPDPDSDS--TTALRFRKLFIVAAHCTEPGGVC 168
Query: 143 FCVSMGTNKA--DNYDAAMNVR----GNEIQLEIRDEDLNIFSGREIDFDIDY------- 189
FC SMGT A YD A+ R G+ +E+ E SG ++ D+ +
Sbjct: 169 FCASMGTGPAAGPGYDLALTERIDEHGHRFVVEVGTE-----SGADVLADVAHRAAATAE 223
Query: 190 ---------VTKNEFEVDLPEKVDFMYM----QNHKMWDEYDTRCIACGRCNYSCPTCTC 236
+P+ VD + + +W++ +RC+ CG C CPTC C
Sbjct: 224 ADDARQAVSTATGRMGRAMPD-VDLRALLRDARGADVWEDVASRCLTCGNCTMVCPTCFC 282
Query: 237 FSMQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKR 296
+ +D+ E+ ER + W+SC ++ + GG + R R R HK+ + +
Sbjct: 283 TTSEDVTDLTGEH-AERWQHWSSCFEPDFSYVHGG-NVRTSGESRYRQWMSHKLGTWFDQ 340
Query: 297 FGENMCVGCGRCDDMCPQYISISEAYEKVAHAM---REKDNEE 336
FG + CVGCGRC D CP I I+ ++ M R +D+ E
Sbjct: 341 FGSSGCVGCGRCIDWCPVGIDITAEAARLVQVMPAYRPEDDRE 383
>gi|119357951|ref|YP_912595.1| hydrogenase/sulfur reductase, beta subunit [Chlorobium
phaeobacteroides DSM 266]
gi|119355300|gb|ABL66171.1| hydrogenase/sulfur reductase, beta subunit [Chlorobium
phaeobacteroides DSM 266]
Length = 359
Score = 98.2 bits (243), Expect = 7e-19, Method: Composition-based stats.
Identities = 69/272 (25%), Positives = 124/272 (45%), Gaps = 26/272 (9%)
Query: 62 AKEALLPVNEVLFYF----TEDEYKVAAEDTRERLVFLRACDMNAVKRIDQIYLGNGASN 117
AK LP +E L F T+ E + E L+ LR CD++A+ +D + L +
Sbjct: 62 AKHFFLPFSEELSRFSFNKTDWEQHITYESDPVVLIGLRPCDISALNILDDVLLKGHYPS 121
Query: 118 DFFYTKTRKKTKFVVVGCSKTFRNCFCVSMG------------TNKADNYDAAMNVRGNE 165
++ K +K FV+ +CFC S+ ++ + Y ++N
Sbjct: 122 PYYLAK--RKNTFVIGMDHLPLPDCFCKSLAHHTVSTGFNLFCSDIGEKYYLSINSSKAF 179
Query: 166 IQLEIRDEDLNIFSGREIDFDIDYVTKNEF--EVD---LPEKVDFMYMQNHKMWDEYDTR 220
L+ D + + + + N F E+D LP +D + + +W+++ +
Sbjct: 180 TYLQEFQTDDPSYEDNCLLTERRNLISNSFKTEIDVTSLPSILDIEF--DSAVWEKWGAK 237
Query: 221 CIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQ 280
C+ CG C CPTC C+S+ + + + R R SC + + +AGGH+FR K+G
Sbjct: 238 CLNCGTCAMVCPTCYCYSLIE-RFDTDLKGASRNRKLYSCNLIDFAVVAGGHNFRPKNGD 296
Query: 281 RMRFKTLHKIHDYKKRFGENMCVGCGRCDDMC 312
R++++ H+ + + + +CVGC RC C
Sbjct: 297 RLKYRYYHQHRGFAENGNQQICVGCNRCGRAC 328
>gi|89091969|ref|ZP_01164924.1| hypothetical protein MED92_07376 [Oceanospirillum sp. MED92]
gi|89083704|gb|EAR62921.1| hypothetical protein MED92_07376 [Oceanospirillum sp. MED92]
Length = 369
Score = 97.8 bits (242), Expect = 1e-18, Method: Composition-based stats.
Identities = 70/262 (26%), Positives = 110/262 (41%), Gaps = 32/262 (12%)
Query: 92 LVFLRACDMNAVKRIDQIYLGNGASNDFFYTKTRKKTKFVVVGCSKTFRNCFCVSMGT-- 149
++ +++CD++A+ DQ +L G D Y RK V V CS CFC S G
Sbjct: 118 VIGVKSCDLSALALQDQHFL-EGEYPDPAYQARRKSLFLVAVNCSTAASTCFCASTGDGP 176
Query: 150 NKADNYDAAMNVRGNEIQLEIRDEDLNIFSGREIDFDIDYVTKNEF-------------- 195
+ +D M + L+ E GRE+ + +E
Sbjct: 177 EASTGFDMVMTELEDGFILQAGSE-----KGREVMAMLPLTAVSESMLQQKQKQKETVFA 231
Query: 196 ----EVDLPEKVDFMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMG 251
++ EK D + H WD+ RC+ACG C CPTC C Q + N
Sbjct: 232 AQSRQLRTIEKTDLAEKRAHPCWDDIAERCLACGNCTMVCPTCFCHH-QTEEAQVNGVDS 290
Query: 252 ERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFK--TLHKIHDYKKRFGENMCVGCGRCD 309
+ R W SC + +AG F+V+ + R++ +HK+ +++++G + C GCGRC
Sbjct: 291 QHVREWDSCFGGSHGQLAG---FQVRDSVKSRYQQWMIHKLDFWQEQYGRSGCTGCGRCM 347
Query: 310 DMCPQYISISEAYEKVAHAMRE 331
CP I +A +E
Sbjct: 348 TWCPAEIDFVAEANLIARGEQE 369
>gi|52842678|ref|YP_096477.1| cytochrome c3 hydrogenase alpha (or beta) chain [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
gi|52629789|gb|AAU28530.1| cytochrome c3 hydrogenase alpha (or beta) chain [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
Length = 403
Score = 97.1 bits (240), Expect = 2e-18, Method: Composition-based stats.
Identities = 77/267 (28%), Positives = 118/267 (44%), Gaps = 36/267 (13%)
Query: 86 EDTRERLVFLRACDMNAVKRIDQIYLGNGASNDFFYTKTRKKTKFVVVGCSKTFRNCFCV 145
++T ++ RACD+ A+ D++++ N D Y + R++ V V C+ + NCFCV
Sbjct: 136 DETPVAIIGSRACDLAAMSIQDKVFIENNKP-DPRYKRRREQLFVVAVNCTYSSANCFCV 194
Query: 146 SMGTNKADN--YDAAMNV------------RGNEI--QLEIRDEDLNIFSGREIDFDIDY 189
S GT A N +D M +G +I QL++ D + + +
Sbjct: 195 SAGTGPAVNNSFDILMTEIEDGFVVEAGSDKGKKIMNQLDLHDAKSAQCTDAQNNVKQAA 254
Query: 190 VTKNEFEVDLPEKVDFMYMQ----NHKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYK 245
+ + + L K D + NH WD+ RC++CG C CPTC C S
Sbjct: 255 ALQTK-RIPLDNKRDLRDLLFSNLNHTRWDDVAERCLSCGNCTLVCPTCFCHS------- 306
Query: 246 ENENMG------ERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGE 299
E E G E R W SC G+T + G R ++ R HK+ + +F
Sbjct: 307 EVEKPGLDGCTSEHHREWDSCFTTGHTYL-NGKIIRDDTKKQYRQWLTHKVGSWFDQFDT 365
Query: 300 NMCVGCGRCDDMCPQYISISEAYEKVA 326
+ CVGCGRC CP I I+E ++
Sbjct: 366 SGCVGCGRCVTWCPVGIDITEELAAIS 392
>gi|54298471|ref|YP_124840.1| hypothetical protein lpp2535 [Legionella pneumophila str. Paris]
gi|53752256|emb|CAH13688.1| hypothetical protein [Legionella pneumophila str. Paris]
Length = 379
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 78/271 (28%), Positives = 117/271 (43%), Gaps = 44/271 (16%)
Query: 86 EDTRERLVFLRACDMNAVKRIDQIYLGNGASNDFFYTKTRKKTKFVVVGCSKTFRNCFCV 145
++T ++ RACD+ A+ D++++ + D Y + R++ V V C+ + NCFCV
Sbjct: 112 DETPVAIIGSRACDLAAMSIQDKVFIESNKP-DPRYKRRREQLFVVAVNCTYSSANCFCV 170
Query: 146 SMGTNKADN--YDAAMNVRGNEIQLEIRDEDLNIFSGREIDFDID-YVTKNEFEVDLPEK 202
S GT A N +D M + +E + G++I +D + KN D
Sbjct: 171 SAGTGPAVNNSFDILMTEIEDGFVVEAGSD-----KGKKIMNQLDLHDAKNAQCTDAQNN 225
Query: 203 V--------------------DFMYMQ-NHKMWDEYDTRCIACGRCNYSCPTCTCFSMQD 241
V D ++ NH WDE RC++CG C CPTC C S
Sbjct: 226 VKQAAALQTKRIPLDNKRDLRDLLFSNLNHTRWDEVAERCLSCGNCTLVCPTCFCHS--- 282
Query: 242 IHYKENENMG------ERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKK 295
E E G E R W SC G+T + G R ++ R HK+ +
Sbjct: 283 ----EVEKPGLDGCTSEHHREWDSCFTTGHTYL-NGKIIRDDTKKQYRQWLTHKVGSWFD 337
Query: 296 RFGENMCVGCGRCDDMCPQYISISEAYEKVA 326
+F + CVGCGRC CP I I+E ++
Sbjct: 338 QFDTSGCVGCGRCATWCPVGIDITEELAAIS 368
>gi|148360077|ref|YP_001251284.1| cytochrome c3 hydrogenase alpha (or beta) chain [Legionella
pneumophila str. Corby]
gi|148281850|gb|ABQ55938.1| cytochrome c3 hydrogenase alpha (or beta) chain [Legionella
pneumophila str. Corby]
Length = 379
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 74/261 (28%), Positives = 118/261 (45%), Gaps = 24/261 (9%)
Query: 86 EDTRERLVFLRACDMNAVKRIDQIYLGNGASNDFFYTKTRKKTKFVVVGCSKTFRNCFCV 145
++T ++ RACD+ A+ D++++ + + D Y + R++ V V C+ + NCFCV
Sbjct: 112 DETPVAIIGSRACDLAAMSIQDKVFIESN-NPDPRYKRRREQLFVVAVNCTYSSANCFCV 170
Query: 146 SMGTNKADN--YDAAMNV------------RGNEI--QLEIRDEDLNIFSGREIDFDIDY 189
S GT A N +D M +G +I QL++ D + + +
Sbjct: 171 SAGTGPAVNNSFDILMTEIEDGFVVEAGSDKGKKIINQLDLHDAKSAQCTDAQNNVKQAA 230
Query: 190 VTKNEFEVDLPEKVDFMYMQ----NHKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYK 245
+ + + L K D + NH WDE RC++CG C CPTC C S +
Sbjct: 231 ALQTK-RIPLDNKRDLRDLLFSNLNHTRWDEVAERCLSCGNCTLVCPTCFCHSEVE-KPS 288
Query: 246 ENENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGENMCVGC 305
+ E R W SC G+T + G R ++ R HK+ + +F + CVGC
Sbjct: 289 LDGCTSEHHREWDSCFTTGHTYL-NGKIIRDDTKKQYRQWLTHKVGSWFDQFDTSGCVGC 347
Query: 306 GRCDDMCPQYISISEAYEKVA 326
GRC CP I I+E ++
Sbjct: 348 GRCVTWCPVGIDITEELAAIS 368
>gi|78356259|ref|YP_387708.1| hydrogenase, putative [Desulfovibrio desulfuricans G20]
gi|78218664|gb|ABB38013.1| hydrogenase, putative [Desulfovibrio desulfuricans G20]
Length = 359
Score = 95.1 bits (235), Expect = 7e-18, Method: Composition-based stats.
Identities = 76/289 (26%), Positives = 118/289 (40%), Gaps = 41/289 (14%)
Query: 63 KEALLPVNEVLFYFTEDE-------YKVAAEDT----RERLVFLRACDMNAVKRIDQIYL 111
KE + P E L F D+ KV + + +V R C +D++Y
Sbjct: 56 KEGVFPQTETLLRFKYDKDPENLDRVKVQVREVLPTQKAVVVGGRPCGARGQLILDRVY- 114
Query: 112 GNGASNDFFYTKTRKKTKFVVVGCSKTFRNCFCVSMGTNKADNYDA-------------- 157
D +Y R+ T +V V C+ CFC S+G+ D+ +
Sbjct: 115 NCDTMRDPYYVSRRENTLYVTVACTSAESTCFCHSVGSGPDDSEGSDVLLVPVEGGYVAE 174
Query: 158 AMNVRGNEIQLEIRDEDLNIFSGREIDFDIDYVTKNEFEV-------DLPEKVDFMYMQN 210
+ RG E+ + + D S +D +++ ++ D P K+ +
Sbjct: 175 GVTERGREL---LAEGDFESASQARMDEAGAVISRTRSQLGEAHDYSDAPRKL-LERFDD 230
Query: 211 HKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWASCQVDGYTNIAG 270
W+E CI+CG C Y CPTC CF+M D +++ G+R R W +C +T
Sbjct: 231 MDFWNEQAAICISCGACTYLCPTCYCFNMTD---EQSGLQGKRLRTWDTCMSFEFTLEGS 287
Query: 271 GHSFRVKHGQRMRFKTLHKIHDYKKRF-GENMCVGCGRCDDMCPQYISI 318
GH+ R R+R + HK Y + G C GCGRC CP + I
Sbjct: 288 GHNPRPTKAHRLRNRMGHKFAYYPELHEGLIACCGCGRCIKSCPVSLDI 336
>gi|54295305|ref|YP_127720.1| hypothetical protein lpl2390 [Legionella pneumophila str. Lens]
gi|53755137|emb|CAH16630.1| hypothetical protein [Legionella pneumophila str. Lens]
Length = 379
Score = 94.7 bits (234), Expect = 7e-18, Method: Composition-based stats.
Identities = 76/267 (28%), Positives = 117/267 (43%), Gaps = 36/267 (13%)
Query: 86 EDTRERLVFLRACDMNAVKRIDQIYLGNGASNDFFYTKTRKKTKFVVVGCSKTFRNCFCV 145
++T ++ RACD+ A+ D++++ + D Y + R++ V V C+ + NCFCV
Sbjct: 112 DETPVAIIGSRACDLAAMSIQDKVFIESNKP-DPRYKRRREQLFVVAVNCTYSSANCFCV 170
Query: 146 SMGTNKADN--YDAAMNV------------RGNEI--QLEIRDEDLNIFSGREIDFDIDY 189
S GT A N +D M +G I QL++ D + + +
Sbjct: 171 SAGTGPAVNNSFDILMTEIEDGFVVEAGSDKGKGIINQLDLHDAKSAQCTDAQNNVKQAA 230
Query: 190 VTKNEFEVDLPEKVDFMYMQ----NHKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYK 245
+ + + L K D + NH WD+ RC++CG C CPTC C S
Sbjct: 231 ALQTK-RIPLDNKRDLRDLLFSNLNHTRWDDVAERCLSCGNCTLVCPTCFCHS------- 282
Query: 246 ENENMG------ERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGE 299
E E G E R W SC G+T + G R ++ R HK+ + +F
Sbjct: 283 EVEKPGLDGCTSEHHREWDSCFTTGHTYL-NGKIIRDDTKKQYRQWLTHKVGSWFDQFDT 341
Query: 300 NMCVGCGRCDDMCPQYISISEAYEKVA 326
+ CVGCGRC CP I I+E ++
Sbjct: 342 SGCVGCGRCVTWCPVGIDITEELAAIS 368
>gi|85857968|ref|YP_460170.1| Ni/Fe hydrogenase beta subunit [Syntrophus aciditrophicus SB]
gi|85721059|gb|ABC76002.1| Ni/Fe hydrogenase beta subunit [Syntrophus aciditrophicus SB]
Length = 345
Score = 92.4 bits (228), Expect = 4e-17, Method: Composition-based stats.
Identities = 49/140 (35%), Positives = 70/140 (50%), Gaps = 6/140 (4%)
Query: 190 VTKNEFEVD---LPEKVDFMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKE 246
+ KNE + LPE F +W+E +RC++CG C CPTC CF M D
Sbjct: 205 IFKNEINIAPRFLPEI--FEKAMESPVWEEVGSRCVSCGNCTNVCPTCYCFDMFD-SINL 261
Query: 247 NENMGERRRVWASCQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKKRFGENMCVGCG 306
+ G R RVW SCQ++ + +AGG +FR + +R R + K +++ C GCG
Sbjct: 262 DMKTGARFRVWDSCQLEPFARVAGGENFREERSERQRHRFFRKFKYPVEKYYRFFCTGCG 321
Query: 307 RCDDMCPQYISISEAYEKVA 326
RC C IS+ E +A
Sbjct: 322 RCTRTCMARISLKETLNALA 341
>gi|78358568|ref|YP_390017.1| hydrogenase, putative [Desulfovibrio desulfuricans G20]
gi|78220973|gb|ABB40322.1| hydrogenase, putative [Desulfovibrio desulfuricans G20]
Length = 362
Score = 82.8 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 9/134 (6%)
Query: 200 PEKVDFMYMQNHKMWDEYDTRCIACGRCNYSCPTCTCFSMQDIHYKENENMGERRRVWAS 259
PE V ++ + + W +C++CG C Y CPTC CF++ D + N G R R W +
Sbjct: 226 PEPVAALF-DDMEFWQSVTAKCLSCGACTYLCPTCYCFNITD---ESNGLEGRRLRTWDN 281
Query: 260 CQVDGYTNIAGGHSFRVKHGQRMRFKTLHKIHDYKK-RFGENMCVGCGRCDDMCPQYISI 318
C +T GH+ R R R + HK Y + G CVGCGRC CP + I
Sbjct: 282 CMSFQFTLEGSGHNPRPTKAHRYRNRIGHKFSYYPRIHDGALSCVGCGRCISSCPVTMDI 341
Query: 319 SEAYEKVAHAMREK 332
++ H+ ++
Sbjct: 342 ----RRIVHSAMQR 351
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.321 0.136 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,321,281,321
Number of Sequences: 5470121
Number of extensions: 56380097
Number of successful extensions: 171316
Number of sequences better than 1.0e-05: 116
Number of HSP's better than 0.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 170767
Number of HSP's gapped (non-prelim): 191
length of query: 355
length of database: 1,894,087,724
effective HSP length: 134
effective length of query: 221
effective length of database: 1,161,091,510
effective search space: 256601223710
effective search space used: 256601223710
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)