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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs736037          
refSNP ID: rs736037
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:86/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:A/G
Ancestral Allele:A
Clinical Association:unknown
HGVS Names
NM_001104595.1:c.522+1055G>A
NM_017911.2:c.522+1055G>A
NT_011523.11:g.995705G>A
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss12520827 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs736037 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss82581TSC-CSHL|TSC0029488fwd/TA/Gcaggccccacctccagcactggggatcacattcagcatgagattttcgtggggacaaatg09/06/0010/10/0386Genomic95 %
ss8305431SC_SNP|NT_011522.3_984280fwd/TA/Gcaggccccacctccagcactggggatcacattcagcatgagattttcgtggggacaaatg04/17/0310/10/03114Genomicunknown
ss12520827WI_SSAHASNP|chr22.NT_011522.4_991210fwd/TA/Gcaggccccacctccagcactggggatcacattcagcatgagattttcgtggggacaaatg07/04/0310/10/03116Genomicunknown
ss13392343SC_SNP|NT_011522.4_991210fwd/TA/Gcaggccccacctccagcactggggatcacattcagcatgagattttcgtggggacaaatg10/23/0310/31/03119Genomicunknown
ss81256024HGSV|Cor18507_SNV_20070510.chr22_44045536fwd/TA/Gcaggccccacctccagcactggggatcacattcagcatgagattttcgtggggacaaatg11/26/0711/28/07130Genomicunknown
ss82172732HGSV|Cor18956_SNV_20070510.chr22_44045536fwd/TA/Gcaggccccacctccagcactggggatcacattcagcatgagattttcgtggggacaaatg11/30/0712/02/07130Genomicunknown
ss84551464HGSV|Cor19129_SNV_20070510.chr22_44045536fwd/TA/Gcaggccccacctccagcactggggatcacattcagcatgagattttcgtggggacaaatg12/06/0712/07/07130Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs736037|allelePos=815|totalLen=1229|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=130
 ACCAAGGTAT GGGCTGGGGG TGCGGGAGGC CTTTGGCCGG CGGCAGAACA AGCCCATGGA
 GTCCCTGGAC TTGAAGGACA AGACCAAGGT GTGGGCTGGG GCTGCGGGCA GCCTGCAGGT
 GTGGGGAGTT CTGTGCCCTG GGAGCTGCTC TCACTTTGTA GCAGTGAATT ACTAATAAAG
 TAgccaggca tggtggcgcc tgcctgcagt ccccgctact ggggaggccg aggtgggagg
 attgcttgag cccaggagtt ccagactgaa atgagctatg atcatgccac ttattccagc
 ctgggtgaca gagtaagacc ctttctctta aaaaaaaaaa agtaataatg gaaagtggca
 cactggcaac ttgggaggct gaggcaggag aatagctgga actgggaggg agatggttgc
 agtgagctga gatcactgta ctccagcctg ggcaagagag tgagaccctg tctcaaaaaa
 caaaagaaaa aaaaaaagaa atacctgaga ctgggtaata tataaagaaa agagctgtaa
 ttggctcacg gttccacagc tgtctaggaa gcatagcagc atctgcttcc ggggaggcct
 caggaagttt ccaatagtgg cagaaggcag agtgggagca ggcatgccac atggcaacag
 agagagtggc tggggggtgg tgccacatgc ttttaaatga ccagatttct caagaagtca
 ctgtcacgaa gatggcacga agccatgagg gatgatcctg ccccgtgatc caagcacctc
 ccaccaggcc ccacctccag cactggggat caca
 R
 ttcagcatga gattttcgtg gggacaaatg tccagactat atcaGTTAGC ATATATTTAC
 AGTTATAAAT AACACTACAG GGTCCTCATA CTTTTATGTC CTGttttcaa gatgaattcc
 tagaagagtt ttatggtcaa aaggtatgaa tgttttaaag actgatgatg taaattacca
 aattgttttc cagaaggagc accagttaca ctcccggtag tggctgagtg tgggagtatc
 catttcctgt atcttgccaa cacatggtgt tatTAAGAAA CAAAATGAAA TACACCTTGT
 CCATTTGATA GCTGAAATTT TCAACATTGA TTTCTTGTGT TACTAAAGGT TGAGCGTAGT
 TTCATGTGAC TCTTGATATT TCTTTTGTGA CATACTTGTG ACCTTTGTGT GTCT

  GeneView back to top
GeneView via analysis of contig annotation: FAM118A family with sequence similarity 118, member A
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_011523->NM_001104595
svfunction
referenceNT_011523->NM_017911
svfunction
HuRefNW_001838751->NM_001104595
svfunction
HuRefNW_001838751->NM_017911
svfunction
CeleraNW_927650->NM_001104595
svfunction
CeleraNW_927650->NM_017911
svfunction
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
referenceNT_011523->NM_001104595->NP_001098065995705forwardintron
referenceNT_011523->NM_017911->NP_060381995705forwardintron
HuRefNW_001838751->NM_001104595->NP_001098065249347forwardintron
HuRefNW_001838751->NM_017911->NP_060381249347forwardintron
CeleraNW_927650->NM_001104595->NP_0010980652816032forwardintron
CeleraNW_927650->NM_017911->NP_0603812816032forwardintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs736037 maps exactly once on NCBI human chromosome 22
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
22NW_001838751.124934728671111plusGalt_assembly_8HuRefHuRefview814
22NW_927650.1281603229636399plusGalt_assembly_1CeleraCeleraview814
22NT_011523.1199570544103663plusGref_assemblyreferencereferenceview814

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_011522
dbSNP Blast Analysis
GenBank HTGS Finished:
AL008718.23 NC_000022.9

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
byClusterwith2hit
DoubleHit found by:  BCM_SSAHASNP, NCBI
UNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .