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AssocExprsExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request for the associated expressions for a given CUI.AssocExprsExecutor,
with empty contents.
AssocExprsExecutor,
initializing the appropriate members.
AssocExprsExecutor,
initializing the appropriate members.
AssociatedExp class represents the
associated expressions for a concept.AssociatedExp
instance with blank members.
AssociatedExp
instance from the argument strings source abbreviation, relation, and
associated expression value.
AssociatedExp
instance from the arguments which describe the structure
of the XML document.
AssociatedExpVector class represents a collection
of AssociatedExp instances maintained within a
Vector subclass.Vector's values.
Vector's values.
AssociatedExpVector
from the XML document passed as an argument.
AssociativeRelExistence class represents
information about the existence of an associative relation
in the Semantic Network.AssociativeRelExistence with the string
members set to blanks and the exists relationship
defaulted to KSSRetrieverV3_0.NonExistent.
AssociativeRelExistence from the XML
document passed as an argument.
AssociativeRelExistence using the contents
of the argument instance.
AssociativeRelExistence
instance from the arguments which represent the structure of
the XML document.
AssociativeRelation class represents an association
of two semantic types using a semantic relation.AssociativeRelation with all members set to
null and the linkStatus defaulted to
SemNetConstants.Defined.
AssociativeRelation with the members set
to the argument instances.
AssociativeRelation
instance from the arguments which represent the structure
of the XML document.
AssociativeRelationVector class represents a
collection of AssociativeRelation instances
maintained within a Vector.Vector's values.
AssociativeRelationVector's
values.
AssociativeRelationVector
instance from the arguments which represent the structure of
the XML document.
Attr class represents information about
string attribute codes and names.Attr instance from the
arguments which represent the structure of the XMl document.
AttrVector class represents a collection of
Attr maintained within a Vector.Vector's values.
AttrVector's values.
AttrVector instance from the
XML document passed as an argument.
AttributeContext class represents information about string
attributes grouped according to source.AttributeContext
with empty contents.
AttributeContext from
the string UID from the source and the source object.
AttributeContext from
the string UID from the source and the source object.
AttributeContext
instance from the arguments which describes the structure of
the XML document.
AttributeValue class represents information about
a term's attribute and its value.AttributeValue instance
with empty contents.
AttributeValue instance
using the Attr instance and string attribute value
passed as arguments.
AttributeValue instance
using the Attr instance and passed arguments.
AttributeValue instance
from the argument string which describes the structure of the
XML document.
addANC method adds an ancestor to this source
context using the context information passed in.
addANC method adds an ancestor to this source
context using the context information passed in.
addAttrName method adds the argument attribute
name for the source to the list of attribute names.
addAttrib method adds an attribute value to the
attribute values of the source.
addAttrib method adds a
AttributeContext
to the attributes for this instance.
addAttrib method adds a
AttributeContext
to the attributes for this instance.
addAttrib method adds the argument
AttributeContext to the list of contexts associated
with this StringAttribute.
addAttrib method adds a StringAttribute
to the attributes for this instance.
addCHD method adds a child to this source context
using the context information passed in.
addCHD method adds a child to this source context
using the context information passed in.
addCXT method adds a StringCxt
to the set of contexts for this instance.
addCXT method adds a SourceCxt
to the list of source contexts for
this instance.
addCoContext method adds a COContext
instance to the set of contexts for this instance.
addDES method adds a descendant to this source
context using the context information passed in.
addDES method adds a descendant to this source
context using the context information passed in.
addDef method adds the argument definition to the
set of definitions for this concept.
addDelta method adds a
ConceptDelta instance that describe a specific change
to the UMLS to the argument.
addExample method adds an example
of the semantic type to the argument.
addQualifier method adds a
QualifierFrequency to the set of
qualifiers for this co-occurrence.
RelSource instance to the set of
source details.
addSIB method adds a sibling to this source
context using the context information passed in.
addSIB method adds a sibling to this source
context using the context information passed in.
addSS method adds the argument string source
to this instance.
addSTY method adds a semantic type to the set
of semantic types for this concept.
addSemTypeId method sets the semantic type identifiers
to the argument.
addSrcInfos method adds the argument source info
to this instance.
addStringSource method adds the string source
details to this instance.
addStringSource method adds a string source
to the instance.
addTV method adds a term variant.
addTerm method adds the string term to this instance.
addTermType method adds the argument term type
for the source to the list of term types.
BasicConceptPropsExecutor will parse the XML query found
in either a String or a char[] and interpret that
query as the request for the Basic Concept Properties for a given CUI.BasicConceptPropsExecutor,
with empty contents.
BasicConceptPropsExecutor,
initializing the appropriate members.
BasicConceptPropsExecutor,
initializing the appropriate members.
COContext class represents information about
co-occuring contexts.COContext instance
with emtpy contents.
COContext instance using
the source of the co-occurrence, the co-occurrence type and the
co-occurrence frequency.
COContext instance using
the source of the co-occurrence, the co-occurrence type and the
co-occurrence frequency.
COContext instance from the
arguments which represent the XML document.
CUIExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request for the CUI for a term name.CUIExecutor,
with empty contents.
CUIExecutor,
initializing the appropriate members.
CUIExecutor,
initializing the appropriate members.
CompareUtil class contains various static functions that
are useful for comparison of "logically equivalent" items.Concept class represents the UMLS Concept information.Concept instance with
null attributes.
Concept instance with the
argument concept unique identifier; all other attributes are set
to null.
Concept instance with the
argument concept unique identifier and argument concept name; all
other attributes are set to null.
Concept instance from the
argument Element which contains the Concept
as a JDOM document ready for parsing.
ConceptAttribute class represents information
about the string attributes of a concept.ConceptAttribute instance passed as an argument.
ConceptAttribute instance
from the arguments which describe the structure of the XML
document.
ConceptAttributeVector class represents a collection of
ConceptAttributes maintained within a Vector.Vector's values.
ConceptAttributeVector's values.
ConceptAttributeVector
instance from the argument string which contains the
ConceptAttributeVector in XML form.
ConceptAttrsExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request for the concept attributes for a given CUI.ConceptAttrsExecutor,
with empty contents.
ConceptAttrsExecutor,
initializing the appropriate members.
ConceptAttrsExecutor,
initializing the appropriate members.
ConceptDelta class represents the
changes that have taken place for a concept during a specific UMLS year.ConceptDelta
instance with empty contents.
ConceptDelta
instance from the argument cui.
ConceptDelta
instance from the argument cui, change type and merge CUI value.
ConceptDelta
instance from the arguments which describe the structure
of the XML document.
ConceptId class represents the pairing of a concept
identifier with a concept name.ConceptId instance
with empty contents.
ConceptId instance with the
argument concept unique identifier and concept name.
ConceptId instance from the
argument Element which contains the ConceptId
as a JDOM document ready for parsing.
ConceptIdVector class represents a collection of ConceptId instances
maintained within a Vector structure.ConceptIdVector instance from
the argument string which contains the ConceptIdVector
in XML form.
ConceptNameExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request for the Concept Name given a CUI
Exceptions are thrown if the structure of the
query does not match the expected structure.ConceptNameExecutor,
with empty contents.
ConceptNameExecutor,
initializing the appropriate members.
ConceptNameExecutor,
initializing the appropriate members.
ConceptPropsExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request for the Concept Properties given a CUI.ConceptPropsExecutor,
with empty contents.
ConceptPropsExecutor,
initializing the appropriate members.
ConceptPropsExecutor,
initializing the appropriate members.
ConceptVector class represents a collection of
Concepts maintained within a Vector.Vector's values.
ConceptVector's values.
ConceptVector instance
from the passed XML representation.
ConstantSettings class contains the constants
for the KSS client.Context class represents the context information for
a concept.Context instance
with empty contents.
Context instance
from the string unique
identifier and a set of StringCxt instances.
Context instance
from the string unique
identifier and sets the initial set of contexts to empty.
Context instance from the
arguments which represent the structure of the XML document.
ContextExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request for the Context for a given CUI.ContextExecutor,
with empty contents.
ContextExecutor,
initializing the appropriate members.
ContextExecutor,
initializing the appropriate members.
ContextVector class represents a collection of
Contexts maintained within a Vector.ContextVector instance from the
arguments which represent the structure of the XML document.
CooccurrenceType class represents the pairing of a
cooccurrence type identifier with its description.CooccurrenceType instance
with empty contents.
CooccurrenceType instance
with the argument cooccurrence type and description.
CooccurrenceType instance
from the argument Element which contains the
CooccurrenceType as a JDOM document ready
for parsing.
CooccurrenceTypeVector class represents a collection of
CooccurrenceType instances maintained within a Vector structure.CooccurrenceTypeVector
instance from the argument string which contains the
CooccurrenceTypeVector in XML form.
CooccurrenceVector class represents a collection of
CooccurringConcepts maintained within a Vector.Vector's values.
CooccurrenceVector's values.
CooccurrenceVector instance
from the argument string which contains the
CooccurrenceVector in XML form.
CooccurrencesExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request for the Cooccurrences for a given CUI.CooccurrencesExecutor,
with empty contents.
CooccurrencesExecutor,
initializing the appropriate members.
CooccurrencesExecutor,
initializing the appropriate members.
CooccurringConcept class represents information
about co-occurring concepts.CooccurringConcept instance
from the argument string which contains the
CooccurringConcept in XML format.
CxtMember class represents the context member information.CxtMember instance from the
arguments which describe the structure of the XML document.
DatabaseException class encapsulates information about
an exception encountered on requesting information from the UMLSKS.Definition class represents the UMLS definition for a
concept.Definition instance
with empty contents.
Definition instance
using the source abbreviation from which the definition came,
and the string containing the definition.
Definition instance from the
argument string which contains the Definition in XML format.
DefinitionExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request for the Definition for a given CUI.DefinitionExecutor,
with empty contents.
DefinitionExecutor,
initializing the appropriate members.
DefinitionExecutor,
initializing the appropriate members.
DefinitionVector class represents a collection
of Definition instances kept within a Vector.DefinitionVector initializes the
vector to empty.
DefinitionVector initializes the
vector to the contents of the argument vector.
DefinitionVector initializes the
vector to the contents of the argument vector.
DefinitionVector instance from
the argument string which contains the DefinitionVector
in XML format.
DescribeCurrentExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request for the Current UMLS Version (year) using the
describeCurrentUMLSVersion API method.DescribeCurrentExecutor,
with empty contents.
DescribeCurrentExecutor,
initializing the appropriate members.
DescribeCurrentExecutor,
initializing the appropriate members.
DescribeSrcExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request for information on a specific source.DescribeSrcExecutor,
with empty contents.
DescribeSrcExecutor,
initializing the appropriate members.
DescribeSrcExecutor,
initializing the appropriate members.
DescribeVersionsExecutor will parse the XML query found in
either
a String or a char[] and interpret that
query as the request for the Versions UMLS Version (year) using the
describeUMLSVersions API method.DescribeVersionsExecutor,
with empty contents.
DescribeVersionsExecutor,
initializing the appropriate members.
DescribeVersionsExecutor,
initializing the appropriate members.
DictionaryVector class represents a collection of
String which are the dictionaries that can be used
to suggest a spelling for an input term.Vector's values.
DictionaryVector's values.
DocEntryType class represents the
description for a specific document entry type.DocEntryType
instance with empty contents.
DocEntryType
instance from the argument value, description, and subtype.
DocEntryTypeVector class represents a collection
of DocEntryType instances maintained within a
Vector.Vector's values.
Vector's values.
DocEntryTypeVector
instance from the argument string which contains the
DocEntryTypeVector in XML form.
DocEntryVector class represents a collection
of DocEntryTypeVector maintained within a
Vector.Vector's values.
Vector's values.
DocEntryVector
instance from the argument string which contains the
DocEntryVector in XML form.
describeCurrentUMLSVersion method returns the
version of UMLS data considered to be the current version.
describeSource method takes a source abbreviation
passed as an argument and returns the triplet containing the source
abbreviation, the source's short name, and the source's official
long name in XML.
describeSource method takes a root source abbreviation
passed as an argument and returns the triplet containing the root source
abbreviation, the source's short name, and the source's official
long name in XML.
describeUMLSChanges method returns the list of
changes to the UMLS.
describeUMLSChanges method returns the list of
changes to the UMLS.
describeUMLSVersions method returns the list of
UMLS data versions that can be accessed by the UMLSKS.
dropSpaces method deletes the spaces from
the argument String.
dumpHasMap method prints the contents
of the hashMap.
dumpHashMap method prints the contents of the
MeSH qualifiers hashMap to standard output.
Executor is the parent class of the various
executors of standard XML queries.ExistsAssocRelExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request to determine whether two given semantic types are
related by the given semantic relation.ExistsAssocRelExecutor,
with empty contents.
ExistsAssocRelExecutor,
initializing the appropriate members.
ExistsAssocRelExecutor,
initializing the appropriate members.
ExistsHierRelExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request to determine whether two given semantic types are
related by the given semantic relation.ExistsHierRelExecutor,
with empty contents.
ExistsHierRelExecutor,
initializing the appropriate members.
ExistsHierRelExecutor,
initializing the appropriate members.
equals method returns a boolean
true if the two are comparably equal where all of the
components have the same contents.
equals method returns a boolean
true if the two are comparably equal where all of the
components have the same contents.
equals method performs a comparison of the current
instance with the argument values,
returning true if they match; otherwise false is returned.
equals method performs a comparison of the current
instance with the argument KSComparable instance,
returning true if they match; otherwise false is returned.
equals method performs a comparison of the current
instance with the argument KSComparable instance,
returning true if they match; otherwise false is returned.
equivalent method returns a
boolean true if the two are comparably
equivalent.
equivalent method returns a
boolean true if the two are comparably
equivalent.
equivalent method performs a comparison of the current
instance with the argument KSComparable instance,
returning true if they match; otherwise false is returned.
equivalent method performs a comparison of the current
instance with the argument KSComparable instance,
returning true if they match; otherwise false is returned.
escape method escapes the special characters
for XML documents.
existsAssociativeRelation method returns a indicator
as to whether HierSemanticType - HierSemanticRelation -
HierSemanticType triplet
that meet the argument restrictions for the semantic relationship
exists.
existsHierRelRelation method returns a indicator
as to whether HierSemanticRelation - HierSemanticRelation - HierSemanticRelation
triplet that meet the argument restrictions for the semantic
relationship exists.
String contained as the content for
the argument element and throw an exception if there is more
than just the string present.
FindBasicConceptExecutor will parse the XML query found in
either a String or a char[] and interpret that
query as the request for the basic concept properties for a term name.FindBasicConceptExecutor,
with empty contents.
FindBasicConceptExecutor,
initializing the appropriate members.
FindBasicConceptExecutor,
initializing the appropriate members.
FindBasicSemRelExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request to locate basic semantic relation properties
containing the search string in the semantic relation name.FindBasicSemRelExecutor,
with empty contents.
FindBasicSemRelExecutor,
initializing the appropriate members.
FindBasicSemRelExecutor,
initializing the appropriate members.
FindBasicSemTypeExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request to locate basic semantic type properties containing the
search string in the semantic type name.FindBasicSemTypeExecutor,
with empty contents.
FindBasicSemTypeExecutor,
initializing the appropriate members.
FindBasicSemTypeExecutor,
initializing the appropriate members.
FindConceptExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request for the concept properties for a term name.FindConceptExecutor,
with empty contents.
FindConceptExecutor,
initializing the appropriate members.
FindConceptExecutor,
initializing the appropriate members.
FindSemRelExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request to locate semantic relation properties containing the
search string in the semantic relation name.FindSemRelExecutor,
with empty contents.
FindSemRelExecutor,
initializing the appropriate members.
FindSemRelExecutor,
initializing the appropriate members.
FindSemTypeExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request to locate semantic type properties containing the
search string in the semantic type name.FindSemTypeExecutor,
with empty contents.
FindSemTypeExecutor,
initializing the appropriate members.
FindSemTypeExecutor,
initializing the appropriate members.
findBasicConcept method obtains Metathesaurus
information on the terms, definitions, and semantic type(s)
for a given argument term name and returns
the data as a buffer of characters that contains the concept in
XML form.
findBasicConcept method obtains Metathesaurus
information on the terms, definitions, and semantic type(s)
for a given argument term name and returns
the data as a buffer of characters that contains the concept in
XML form.
findBasicSemRelation method returns the
attributes/properties of the semantic relation whose name
contains the argument string.
findBasicSemType method attempts to locate
attributes/properties of the semantic type whose name
contains the argument string.
findCUI method obtains the concept unique
identifiers from the Metathesaurus for that have the concept
name as one of its terms
and returns the list of CUIs as a character buffer
containing those concept unique identifiers in XML format.
findCUI method obtains the concept unique
identifiers from the Metathesaurus for that have the concept
name as one of its terms
and returns the list of CUIs as a character buffer
containing those concept unique identifiers in XML format.
findCUI method obtains the concept unique
identifier from the Metathesaurus for concepts that belong
to the argument semantic type and returns the data as a
character buffer containing the concept unique identifier in
XML format.
findCUI method obtains the concept unique
identifier from the Metathesaurus for a concept found in
the specified source vocabulary with the specified
unique code identifier and returns the data as a character buffer
containing the concept unique identifier in XML format.
findConcept method obtains Metathesaurus
information on the terms, definitions, semantic type, and
context for a given argument term name and returns
the data as a buffer of characters that contains the concept in
XML form.
findConcept method obtains Metathesaurus
information on the terms, definitions, semantic type, and
context for a given argument term name and returns
the data as a buffer of characters that contains the concept in
XML form.
findLUI method finds the LUI for the specified
term name in the
Metathesaurus as contained in the 'MRCON' file.
findLUI method finds the LUI for the specified
term name in the
Metathesaurus as contained in the 'MRCON' file.
findSUI method finds the SUI for the specified
string in the
Metathesaurus as contained in the 'MRCON' file.
findSemRelation method returns the
attributes/properties of the semantic relation whose name
contains the argument string.
findSemType method attempts to locate
attributes/properties of the semantic type whose name
contains the argument string.
findTerms method obtains Metathesaurus
information on the terms found in a set of sources for a given
argument term to be matched exactly and returns
the data as a buffer of characters that contain the terms in
XML form.
GetAUIDetailsExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request for the string associated with a given AUI.GetAUIDetailsExecutor,
with empty contents.
GetAUIDetailsExecutor,
initializing the appropriate members.
GetAUIDetailsExecutor,
initializing the appropriate members.
GetAssocRelExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request to determine whether two given semantic types are
related by the given semantic relation.GetAssocRelExecutor,
with empty contents.
GetAssocRelExecutor,
initializing the appropriate members.
GetAssocRelExecutor,
initializing the appropriate members.
GetBasicAssocRelExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request to determine whether two given semantic types are
related by the given semantic relation.GetBasicAssocRelExecutor,
with empty contents.
GetBasicAssocRelExecutor,
initializing the appropriate members.
GetBasicAssocRelExecutor,
initializing the appropriate members.
getANC method returns the ancestors of the context
as a Vector of CxtMember instances.
getAT method returns the Attr
associated with this instance.
getATN parses the element and namespace
for the ATN of the form:getATUI method returns the attribute
attribute unique identifier associated with this instance.
getATUI method returns the attribute unique identifier.
getATUI method returns the string attribute identifier.
getATV method returns the attribute value
associated with this instance.
getATX method returns the associated
expression value as a String.
getATXs method returns the associated expression
info for the concept.
getAUI method returns the atom unique identifier.
getAUI method returns the atomic unique identifier.
getAUI method returns the atomic identifier
as a string.
getAUI method returns the AUI field.
getAUI method returns the atom unique
identifier for the related concept in the relation.
getAUI method returns the atom unique identifier
within this concept involved in the relation.
getAUI parses the element and namespace
for the AUI of the form:getAUI1 method returns the atom unique identifier
for concept 1.
getAUI2 method returns the String
containing the atom unique identifier.
getAUI2 method returns a String containing
the atomic identifier.
getAUIDetails method returns the Metathesaurus
string for the argument atomic unique identifier.
getAbbrev method returns the abbreviation of the
semantic relation.
getAbbrev method returns the abbreviation
of the semantic type.
getAbbrev method returns the abbreviation of the
semantic group.
getAssocExprs method obtains Metathesaurus associated
expressions found in a specific source for a given argument
concept identifier and returns the data as a character buffer
containing the associated expressions in XML format.
getAssocExprs method obtains Metathesaurus associated
expressions found in a specific source for a given argument
concept identifier and returns the data as a character buffer
containing the associated expressions in XML format.
getAssociativeRelations method returns a list of
HierSemanticType - HierSemanticRelation - HierSemanticType triplets
that meet the argument restrictions for the semantic relationship
requested.
getAttrNameList method returns the attribute name
list for the source.
getAttribs method returns the Vector
of attribute values for this attribute context/source.
getAttribs method returns the set of
AttributeContext instances associated
with this instance.
getAttribs method returns the set of
AttributeContext instances associated
with this instance.
getAttribs method returns the vector of
attribute contexts for this instance of StringAttribute.
getAttribs method returns the set of
StringAttribute instances associated with this instance.
getAutoGen method returns the auto-generated
flag indicating the relation was generated by software and
is unverified.
getBasicAssociativeRelations method returns a list of
HierSemanticType - HierSemanticRelation - HierSemanticType triplets
that meet the argument restrictions for the semantic relationship
requested.
getBasicConceptProperties method obtains Metathesaurus
information on the terms, definitions, and semantic type(s)
for a given argument concept identifier and returns
the data as a buffer of characters that contains the concept in
XML form.
getBasicConceptProperties method obtains Metathesaurus
information on the terms, definitions, and semantic type(s)
for a given argument concept identifier and returns
the data as a buffer of characters that contains the concept in
XML form.
getCCP method returns the member of the context.
getCHD method returns the children of the
context as a Vector of CxtMember instances.
getCN method returns the concept name.
getCN method returns the concept name for this concept.
getCN method returns the concept name for
this concept id.
getCN method returns the concept
name for the related concept in the relation.
getCN method returns the concept name
for this concept in the relation.
getCN parses the element and namespace
for the CN of the form:getCOCs method returns the cooccurrence info for
the concept.
getCOF method returns the frequency of
the co-occurrence.
getCOT method returns a String containing
the co-occurrence type.
getCOT method returns the cooccurrence type
for this cooccurrence type instance.
getCOT parses the element and namespace
for the COT of the form:getCUI method returns the concept
unique identifier.
getCUI method returns the cui associated
with this instance.
getCUI method returns the concept unique
identifier (CUI) for this concept.
getCUI method returns the concept unique
identifier (CUI) for this concept id.
getCUI method returns the CUI for the change
as a String.
getCUI method returns the concept
unique identifier for the related concept in the relation.
getCUI method returns the concept unique
identifier for this concept in the relation.
getCUI parses the element and namespace
for the CUI of the form:getCUI parses the element and namespace
for the CUI of the form:getCUI parses the element and namespace
for the concept unique identifier element (<cui>).
getCUI1 method returns the Concept unique identifier
for concept 1.
getCUI method.
getCUI2 method returns the String
containing the concept unique identifier.
getCUI2 method returns the Concept unique identifier
for concept 2.
Concept objects are no longer
held by this object, only its CUI and concept name.
The RelSource instances hold the information about
the related concept.
getCUIFrequency method returns the CUI
frequency for the source.
getCUIs parses the element and namespace
for the concept unique identifiers.
getCXN method returns the context name.
getCXS method returns a String
containing the context member string.
getCXT method returns the relatives
for this instance.
getCXT method returns the source contexts
for this instance.
getCXTs method returns the context
for this concept.
getChangeType method returns the type of change
made to the concept (either DELETION, MERGE, BROADER, NARROWER,
or OTHER).
getCharEncode method returns the character encoding
for the source.
getChildren method returns the list of children
relations as a HierSemanticRelationVector for the
semantic relation.
getChildren method returns the list of children
types as a HierSemanticTypeVector for the semantic type.
getChildrenUIs method returns the list of children
UIs as a Vector of Stringfor
the semantic relation.
getChildrenUIs method returns the list of children
UIs as a Vector of Stringfor
the semantic type.
getCoContexts method returns the set of contexts
for this instance.
getCode method returns the 2-character code.
getCon method returns the Concept
associated with this instance.
getCon1 method returns the Concept
instance for concept 1.
Concept objects are no longer
held by this object, only its CUI and concept name.
getCon2 method returns the Concept
instance for concept 2.
Concept objects are no longer
held by this object, only its CUI and concept name.
getConceptAttributes method obtains Metathesaurus
information on a specific concept's attributes, generally
found in the Metathesaurus vocabulary ('MTH')
with a specific attribute name for a given argument concept
and returns the data as a buffer of characters that contain
the attributes in XML form.
getConceptName method obtains the concept name
from the Metathesaurus for a given argument
concept identifier and returns the data as a character buffer
containing the concept name in XML format.
getConceptProperties method obtains Metathesaurus
information on the terms, definitions, semantic type, and
context for a given argument concept identifier and returns
the data as a buffer of characters that contains the concept in
XML form.
getConceptProperties method obtains Metathesaurus
information on the terms, definitions, semantic type, and
context for a given argument concept identifier and returns
the data as a buffer of characters that contains the concept in
XML form.
getContains parses the element and namespace
for the search text.
getContentContact method returns the content
contact information for the source.
getContext method obtains Metathesaurus
context information for a given argument concept unique
identifier and returns the data
as a buffer of characters that contain the context in XML form.
getContext method returns the context
type for the source.
getCooccurrences method obtains Metathesaurus
information on the cooccurrences found in a given source with
the given cooccurrence type
for a given argument concept identifier and returns the data
as a character buffer containing the cooccurrences in XML format.
getCurrentUMLSVersion method returns the version of
UMLS data accessed by the UMLSKS.
getCurrentVersion method returns the current version
flag for the source.
getRelease(element, namespace) instead.
getRelease(element, namespace) instead.
getDEF method returns the definition string.
getDES method returns the descendants of
the context as a Vector of CxtMember
instances.
getDUI method returns the string unique identifier.
getDUI parses the element and namespace
for the DUI of the form:getDatabaseFormat method returns the string indicating
the format of the underlying database as defined by property
DatabaseFormat or empty string if unable to obtain
the property.
getDef method returns the definition of the
semantic relation.
getDef method returns the definition of the
semantic type.
getDefinition method obtains Metathesaurus
information on the definition for a given argument concept
identifier and returns
the data as a buffer of characters that contain the definition in
XML form.
getDefs method returns the definitions
associated with this concept.
getDeltas method returns the Vector
of ConceptDelta instances that describe the changes
to the UMLS.
getDescription method returns the description for the
document entry as a String.
suggestSpelling parses the element and namespace
for the dictionary of the form:getDictionary returns the dictionary name.
getDirectionality method returns the
relation's directionality flag.
getExamples method returns set of examples
of the semantic type.
getExists method returns the existence indicator
for the relation.
getExists method returns the existence indicator
for the relation.
getExpanded method returns the expanded flag of the
semantic relation.
getExpanded method returns the expanded flag of the
semantic type.
getFR method returns the frequency of the concepts
in the source.
getFamily method returns the family for the
source.
getFrequency method returns the string
containing the frequency for this instance.
getHCD method returns the String
value of the hierarchical code.
getISN method returns the information source field.
getIncSuppressibles parses the element and namespace
for the suppressible synonym inclusion of the form:getInsert method returns the Metathesuarus insert
version for the source.
getInstance method creates and returns
a DictionaryVector instance from the
XML representation passed as an argument.
getInstance method creates and returns
a SpellingSuggestionsVector instance from the
XML representation passed as an argument.
getInstance method creates and returns
a TableNameVector instance from the
XML representation passed as an argument.
getInstance method creates and returns
a UMLSYearVector instance from the
XML representation passed as an argument.
getInstance method creates and returns
a LexicalRecordVector instance from the
XML representation passed as an argument.
getInstance method creates and returns
an DocEntryType instance from the XML
representation passed as an argument.
getInstance method creates and returns a
DocEntryTypeVector
instance from the argument string which contains the
DocEntryTypeVector in XML form.
getInstance method creates and returns a
DocEntryVector
instance from the argument string which contains the
DocEntryVector in XML form.
getInstance method creates and returns
an AssociatedExp instance from the XML
representation passed as an argument.
getInstance method creates and returns a
AssociatedExpVector instance from the
XML representation passed as an argument.
getInstance method creates and returns
a Attr instance from the XML representation
passed as an argument.
getInstance method creates and returns
a AttrVector instance from the XML representation
passed as an argument.
getInstance method creates and returns an
AttributeContext instance from the XML representation
passed as an argument.
getInstance method creates and returns an
AttributeValue instance from the XML representation
passed as an argument.
getInstance method creates and returns a
ConceptAttribute instance from the XML representation
passed as an argument.
getInstance method creates and returns a
ConceptAttributeVector instance from the XML
representation passed as an argument.
getInstance method creates and returns a
RelationshipAttribute instance from the XML representation
passed as an argument.
getInstance method creates and returns a
RelationshipAttributeVector instance from the XML
representation passed as an argument.
getInstance method creates and returns a
StringAttribute instance from the XML representation
passed as an argument.
getInstance method creates and returns a
TermAttribute instance from the XML representation
passed as an argument.
getInstance method creates and returns a
TermAttributeVector instance from the XML
representation passed as an argument.
getInstance method creates and returns a
Concept instance from the XML representation passed
as an argument.
getInstance method creates and returns a
ConceptId instance from the XML representation passed
as an argument.
getInstance method creates and returns a
ConceptIdVector instance from the XML representation passed
as an argument.
getInstance method creates and returns a
ConceptVector instance from the XML representation
passed as an argument or null if unable to interpret the XML.
getInstance method creates and returns a
Definition instance from the XML representation passed as
an argument.
getInstancemethod creates and returns a
DefinitionVector instance from
the argument string which contains the DefinitionVector
in XML format.
getInstance method creates and returns a
SemType instance from the XML representation passed as
an argument.
getInstance creates a SemTypeVector
instance from the argument string which contains the
SemTypeVector in XML format.
getInstance method creates and returns a
SourceInfo instance from the XML representation
passed as an argument.
getInstance method creates and returns a
StringId instance from the XML representation passed
as an argument.
getInstance method creates and returns a
StringIdVector instance from the XML representation
passed as an argument.
getInstance method creates and returns a
StringInfo instance from the XML representation passed
as an argument.
getInstance method creates and returns a
StringSource instance from the XML representation
passed as an argument.
getInstance method creates and returns a
StringType instance from the XML representation
passed as an argument.
getInstance method creates and returns a
StringTypeVector instance from the XML
representation passed as an argument.
getInstance method creates and returns
a Term instance from the XML representation passed
as an argument.
getInstance method creates and returns a
TermCollection instance from the XML representation
passed as an argument.
getInstance method creates and returns a
TermId instance from the XML representation passed
as an argument.
getInstance method creates and returns a
TermIdVector instance from the XML representation passed
as an argument.
getInstance method creates and returns a
TermType instance from the XML representation passed
as an argument.
getInstance method creates and returns a
TermTypeVector instance from the XML representation passed
as an argument.
getInstance method creates and returns a
TermVector instance from the XML representation passed
as an argument.
getInstance method creates and returns a
Context instance from the XML representation
passed as an argument.
getInstance method creates and returns a
ContextVector instance from the XML representation
passed as an argument.
getInstance method creates and returns a
CxtMember instance from the XML representation
passed as an argument.
getInstance method creates and returns a
SourceCxt instance from the XML representation passed
as an argument.
getInstance method creates and returns a
StringCxt instance from the XML representation passed
as an argument.
getInstance method creates and returns a
COContext instance from the XML representation
passed as an argument.
getInstance method creates and returns a
CooccurrenceType instance from the XML representation
passed as an argument.
getInstance method creates and returns a
CooccurrenceTypeVector instance from the XML
representation passed as an argument.
getInstance method creates and returns a
CooccurrenceVector instance from the XML
representation passed as an argument.
getInstance method creates and returns a
CooccurringConcept instance from the XML
representation passed as an argument.
getInstance method creates and returns
a MeSHQualifier instance from the XML representation
passed as an argument.
getInstance method creates and returns
a MeSHQualifierVector instance from the XML representation
passed as an argument.
getInstance method creates and returns a
QualifierFrequency instance from the XML
representation passed as an argument.
getInstance method creates and returns
an ConceptDelta instance from the XML
representation passed as an argument.
getInstance method creates and returns
an ReleaseDelta instance from the XML
representation passed as an argument.
getInstance method creates and returns a
ReleaseDeltaVector
instance from the argument string which contains the
ReleaseDeltaVector in XML form.
getInstance method creates and returns
an Locator instance from the XML representation
passed as an argument.
getInstance method creates and returns a
LocatorVector instance from the XML representation
passed as an argument.
getInstance method creates and returns
an MeSHEntry instance from the XML representation
passed as an argument.
getInstance method creates and returns
a MeSHEntryVector instance from the XML
representation passed as an argument.
getInstance method creates and returns
an MeSHInfo instance from the XML representation
passed as an argument.
getInstance method creates and returns
a MeSHInfoVector instance from the XML
representation passed as an argument.
getInstance method creates and returns
a RelSource instance from the XML representation
passed as an argument.
getInstance method creates and returns
a Relation instance from the XML representation
passed as an argument.
getInstance method creates and returns a
RelationType instance from the XML representation
passed as an argument.
getInstance method creates and returns a
RelationTypeVector instance from the XML
representation passed as an argument.
getInstance method creates and returns
a RelationVector instance from the XML representation
passed as an argument.
getInstance method creates and returns
a Source instance from the XML representation
passed as an argument.
getInstance method creates and returns
a SourceVector instance from the XML representation
passed as an argument.
getInstance method creates and returns
a AssociativeRelExistence instance from the XML
representation passed as an argument.
getInstance method creates and returns
a AssociativeRelation instance from the XML
representation passed as an argument.
getInstance method creates and returns
a AssociativeRelationVector instance from the XML
representation passed as an argument.
getInstance method creates and returns
a HierRelRelExistence instance from the XML
representation passed as an argument.
getInstance method creates and returns
a HierSemanticRelation instance from the XML
representation passed as an argument.
getInstance method creates and returns
a HierSemanticRelationVector instance from the
XML representation passed as an argument.
getInstance method creates and returns
a HierSemanticType instance from the XML representation
passed as an argument.
getInstance method creates and returns
a HierSemanticTypeVector instance from the
XML representation passed as an argument.
getInstance method creates and returns
a SemGroup instance from the XML representation
passed as an argument.
getInstance method creates and returns
a SemGroupVector instance from the XML representation
passed as an argument.
getInstance method creates and returns
a SemNetId instance from the XML representation
passed as an argument.
getInstance method creates and returns
a SemNetIdVector instance from the XML representation
passed as an argument.
getInverse method returns the inverse semantic
relation name of the semantic relation.
getKey method returns a String
that represents a unique hashcode for this element.
getKey returns a unique code for this instance.
getKey method returns a String
that represents a unique hashcode for this element.
getLAT method returns the language for
this string id.
getLAT method returns the language for
this term id.
getLAT parses the element and namespace
for the LAT of the form:getLHS method returns the left-hand
semantic type of the semantic relation triplet.
getLHSSemRel method returns the name of the
LHS semantic relation.
getLHSSemRelation parses the element and namespace
for the LHS semantic relation element (<lhs_semrel>).
getLHSSemType method returns the name of the
LHS semantic type.
getLHSSemType parses the element and namespace
for the LHS semantic type element (<lhs_semtype>).
getLOCs method returns the locator info for
the concept.
getLUI method returns the Lexical Unique Identifier
for this term.
getLUI method returns the term unique
identifier (LUI) for this term id.
getLUI method returns the LUI field.
getLUI parses the element and namespace
for the lui of the form:getLanguage method returns the language
for the source.
getLexicalRecords method returns an XML document
as generated by the LexAccess tool developed by
the LVG Development Group.
getLicenseContact method returns the license
contact information for the source.
getLinkStatus method returns the link status
of the semantic relation triplet.
getLocator method obtains the locator
information from the Metathesaurus.
getLocators method obtains the locator
information from the Metathesaurus.
getManip parses the element and namespace
for the manipulation criteria.
getMeSHEntries method obtains the MeSH entries
for a particular CUI from the Metathesaurus.
getMeSHEntries method obtains the MeSH entries
for a particular CUI from the Metathesaurus.
getMeSHInfo method obtains the MeSH terms
for a particular DUI from the Metathesaurus.
getMeSHQualifierFileName method returns the
file name of the MeSH Qualifiers file as defined by the property
KssMeshQualifierFile or empty string if unable to
obtain the property.
getMeSHQualifierFileName method returns the
file name of the MeSH Qualifiers file as defined by the property
KssMeshQualifierFile or empty string if unable to
obtain the property.
getMergeCUI method returns the CUI value for
concept into which the old concept was merged
as a String.
getMetaEnd method returns the Metathesuarus end
date for the source.
getMetaStart method returns the Metathesuarus start
date for the source.
getNHFlag method returns the non-human flag
of the semantic type.
getName method returns the string qualifier name.
getName method returns the source's full name.
getName method returns the name of the
semantic relation.
getName method returns the name of the
semantic type.
getName method returns the name of the
semantic group.
getName method returns the name of the
semantic identifier.
getNickName method returns the nickname for the source.
getNonInheritable method returns the non-inheritable
flag for the semantic relation.
getParentUI method returns the parent UI
of the semantic relation.
getParentUI method returns the parent UI
of the semantic type.
getPreferred method returns the flag indicating
whether or not this is the preferred term.
getQualifier method returns the MeSH qualifier
details in a MeSHQualifier instance.
getQualifiers method returns the qualifier
information in a QualifierFrequencyVector of
QualifierFrequency instances.
getQuery method gets the query string.
getQuery method returns the query string.
getRCUI method returns the root CUI for the
SRC concept.
getREL method returns the relation name
as a String.
getREL method returns the String
value of the relationship.
getREL method returns the relation type
for this relation type instance.
getREL parses the element and namespace
for the REL of the form:getRHS method returns the right-hand
semantic type of the semantic relation triplet.
getRHSSemRel method returns the name of the
RHS semantic relation.
getRHSSemRelation parses the element and namespace
for the RHS semantic relation element (<rhs_semrel>).
getRHSSemType method returns the name of the
RHS semantic type.
getRHSSemType parses the element and namespace
for the RHS semantic type element (<rhs_semtype>).
getRSAB method returns the root source
abbreviation (equivalent to SourceV2_1.getSAB()).
getRUI method returns the rui associated
with this instance.
getRUI method returns the relation identifier
for the relationship.
getRank method returns the String
value of the rank.
getRawRecords method obtains the raw records from the
Metathesaurus from the 'mrcon' table.
getRel method returns the relation name for
the relationship between the two concepts.
getRelA method returns the relation attribute
attributed by the source.
RelSource instances that
are part of this relation.
getRelation method returns the relation name.
getRelation method returns the right-hand
semantic type of the semantic relation triplet.
getRelation method returns the relation name.
getRelations method obtains Metathesaurus
information on the relationships for a given argument concept
and returns a set of characters containing the
XML representation for the relations.
getRelationshipAttributes method obtains Metathesaurus
information on a specific relationship's attributes, generally
found in the Metathesaurus vocabulary ('MTH')
with a specific attribute name for a given argument concept
and returns the data as a buffer of characters that contain
the attributes in XML form.
getRelease method returns the UMLS release.
getRelease method returns the UMLS release.
getRelease method returns the UMLS release
as a String.
getRelease parses the element and namespace
for the UMLS release of the form:getRelease parses the element and namespace
for the UMLS release of the form:getReleases parses the element and namespace
for the UMLS releases.
getRels method returns the relations for the concept.
getRemove method returns the Metathesuarus removal
version for the source.
getSAB method returns the source abbreviation
as a String.
getSAB method returns the source abbreviation.
getSAB method returns the string abbreviation.
getSAB method returns the source abbreviation for
this instance.
getSAB returns the source abbreviation from
which this relation was created/derived.
getSAB method returns the root source abbreviation.
getSAB parses the element and namespace
for the SAB of the form:getSABS parses the element and namespace
for the SABS of the form:getSATUI method returns the attribute source
asserted attribute unique identifier
associated with this instance.
getSATUI method returns the source asserted
attribute unique identifier.
getSATs method returns the term (string) attribute
info for the concept.
getSAUI method returns the source asserted
atomic identifier.
getType method returns source code.
getSCD method returns the source code value.
getSCD method returns the source concept code
as a string.
getSCD method returns the SCD field.
getSCD parses the element and namespace
for the scd of the form:getSCIT method returns the source citation
for the source.
getSCUI method returns the source asserted concept id.
getSDUI method returns the source asserted
descriptor id.
getSIB method returns the siblings of the context
as a Vector of CxtMember instances.
getSL method returns the abbreviation of the
relation label.
getSNA method returns the actual name field.
getSOUI method returns the unique id of record in
the source.
getSRL method returns the source restriction level.
getSRUI returns the source relation unique
identifier.
getSS method returns the stringSources as a Vector.
getSTR method returns the String
instance containing the string of this attribute.
getSTR method returns the string representation.
getSTR method returns the STR field.
getSTT method returns the string type for this instance.
getSTT method returns the string type
for this string type instance.
getSTY method returns the string semantic type.
getSTYs method returns the semantic types
associated with this concept.
getSUI method returns the String Unique
Identifier (SUI).
getSUI method returns the string unique
identifier (SUI) for this string id.
getSUI method returns the source identifier.
getSUI method returns the string unique
identifier (SUI) for this instance.
getSUI method returns the string unique identifier.
getSUI method returns the string unique identifier.
getSUI parses the element and namespace
for the sui of the form:getSWVersion method returns the version of
the UMLSKS Software Release.
getSabin method returns the sabin
flag for the source.
getSemGroup method returns the name of the
Semantic Group to which the given concept unique identifier belongs.
getSemGroup parses the element and namespace
for the semantic group element (<semgroup>).
getSemNetASCIIRecords method returns the '|' separated
list of ASCII relational records for the requested table.
getSemRelation parses the element and namespace
for the semantic relation name enclosed in the <semrel/> tag.
getSemRelationAncestors method returns the
parent tree of the requested semantic relation name or
unique identifier.
getSemRelationProperties method returns the
attributes/properties of the requested semantic relation name or
unique identifier.
getSemType parses the element and namespace
for the semtype of the form:getSemType parses the element and namespace
for the semantic type name enclosed in the <semtype/> tag.
getSemTypeAncestors method returns the
parent tree of the requested semantic type name or
unique identifier.
getSemTypeIds method returns the list of semantic
type identifiers for this group.
getSemTypeProperties method returns the
attributes/properties of the requested semantic type name or
unique identifier.
getSemTypeSiblings method returns the
list of siblings of the requested semantic type name or
unique identifier.
getSemanticType method obtains Metathesaurus
information on the semantic types for a given concept identifier
and returns the data as a buffer of characters that contain the
semantic type information in XML form.
getSource method returns the Source
instance for the source.
getSource method returns the Source instance
defining the source of the co-occurrence.
getSourceFileName method returns the file name for
Sources as defined by the property KssSourceFile
or empty string if unable to obtain the property.
getSourceFileName method returns the file name for
Sources as defined by the property KssSourceFile
or empty string if unable to obtain the property.
getSpellingTerm returns the original spelling term.
getSrcInfos method returns the source details
as a Vector.
getString method returns the string for
this string id.
getString parses the element and namespace
for the string of the form:getStringAttributeFileName method returns the
file name for String Attributes file as defined by the property
KssStringAttributesFile or empty string if unable to obtain
the property.
getStringAttributeFileName method returns the
file name for String Attributes file as defined by the property
KssStringAttributesFile or empty string if unable to obtain
the property.
getStringAttributes method obtains Metathesaurus
information on the term attributes found in a particular source
with a specific attribute name for a given argument concept
and returns the data as a buffer of characters that contain
the attributes in XML form.
getStringAttributes method obtains Metathesaurus
information on the term attributes found in a particular source
with a specific attribute name for a given argument concept
and returns the data as a buffer of characters that contain
the attributes in XML form.
getStringInfo method returns the
StringInfo
instance containing the string of this attribute.
getStringInfo method returns the
StringInfo for a given source unique identifier or
null if there isn't one.
getStringSources method returns the string source
details for this instance.
getStringSources method returns the string source
details for this instance.
getStringsForSUI method finds the strings associated
with the specified SUI in the
Metathesaurus as contained in the 'MRCON' file.
getSubtype method returns the subtype for the
document entry as a String.
getSubtype parses the element and namespace
for the document entry type of the form:getSuppressible method returns the source
suppressibility for the string.
getSuppressible method returns the source suppressibility
for the string.
getTN method returns the term name.
getTN parses the element and namespace
for the TN of the form:getTN parses the element and namespace
for the TN of the form:getTTY method returns the term type.
getTTY method returns the term type.
getTTY method returns the term type
identifier (TTY) for this term type instance.
getTTY method returns the TTY field.
getTUI method returns the semantic
type unique identifier.
getTV returns the term variants.
getTableName parses the element and namespace
for the TableName of the form:getTableName parses the element and namespace
for the table name element (<tableName>).
getTerm method returns the Term
associated with this instance.
getTerm method returns the Term object
for a given LUI; null is returned if no term can be found for the
argument LUI.
getTermFrequency method returns the term
frequency for the source.
getTermName method returns the term name for
this term id.
getTermTypeList method returns the term type
list for the source.
getTerminology method obtains Metathesaurus
information on the terms found in a set of sources for a given
argument concept identifier and returns
the data as a buffer of characters that contain the terms in
XML form.
getTerminology method obtains Metathesaurus
information on the terms found in a particular source for a
given argument concept identifier and returns
the data as a buffer of characters that contain the terms in
XML form.
getTerminology method obtains Metathesaurus
information on the terms found in a set of sources for a given
argument concept identifier and returns
the data as a buffer of characters that contain the terms in
XML form.
getTerminology method obtains Metathesaurus
information on the terms found in a particular source for a
given argument concept identifier and returns
the data as a buffer of characters that contain the terms in
XML form.
KSSRetrieverV4_2.findTerms instead.
KSSRetrieverV4_2.findTerms
instead.
getTerms method returns the terms
associated with this concept.
getTerms method returns the MeSH terms with this
instance's DUI.
getTermsForLUI method finds the terms associated
with the specified LUI in the
Metathesaurus as contained in the 'MRCON' file.
getTermsForLUI method finds the terms associated
with the specified LUI in the
Metathesaurus as contained in the 'MRCON' file.
getTreeExpansion parses the element and namespace
for the <expandTree> element that if present causes a true
to be returned; otherwise, false is returned.
getTreeNum method returns the tree number of the
semantic relation.
getTreeNum method returns the tree number of the
semantic type.
getType method returns the type of the
string attribute.
getType method returns the type of the
identifier for the related concept in the relation.
getType method returns the atom unique identifier
type within this concept involved in the relation.
getType method returns the type indicator for
this semantic identifier.
getType parses the element and namespace
for the document entry type of the form:getTypeDesc method returns the type description for
this string type.
getTypeDesc method returns the type description for
this term type.
getTypeDesc method returns the type description for
this cooccurrence type.
getTypeDesc method returns the type description for
this relation type.
getUI method returns the unique identifier
of the type of the string attribute.
getUI method returns the UI of the
semantic relation.
getUI method returns the UI of the
semantic type.
getUI method returns the UI of the
semantic group.
getUI method returns the UI of the
semantic identifier.
getUMLSRelease parses the element and namespace
for the UMLS release indicator of the form:getUMLSVersions method returns the
list of UMLS data versions that can be accessed by the UMLSKS.
getUN method returns the frequency meaning field.
getUsage method returns the usage note of the
semantic type.
getVCUI method returns the versioned CUI for the
SRC concept.
getVSAB method returns the versioned source
abbreviation.
getValue method returns the value for the document
entry as a String.
getVersion method returns the version for the
source.
getXC method returns the String
value of the children flag.
getXmlStringTag method gets the XML tag for
each entry in the vector.
getXmlStructure method returns the XML version.
getXmlStructure method returns the XML version.
getXmlTag method returns the XML tag.
getXmlTag method returns the XML tag.
getReleases(element, namespace) instead.
HierRelRelExistence class represents
information about the existence of a hierarchically related
semantic relation in the Semantic Network.HierRelRelExistence where the strings are
set to blanks and the exists is defaulted to
KSSRetrieverV3_0.NonExistent.
HierRelRelExistence by reading and interpreting
the XML document.
HierRelRelExistence by copying the contents
of the argument instance.
HierRelRelExistence
instance from the arguments which represent the structure of
the XML document.
HierSemanticRelation class represents information about
a particular semantic relation including its name, unique identifier,
tree number within the network hierarchy, definition, abbreviation,
non-inheritable flag inverse semantic relation name, parent unique
identifier and any children relations it may have.HierSemanticRelation.
HierSemanticRelation instance
from the arguments which represent the structure of the XML document.
HierSemanticRelationVector class represents a collection of
HierSemanticRelation instances maintained
within a Vector.Vector's values.
HierSemanticRelationVector's values.
HierSemanticRelationVector
instance from the arguments which represent the structure of the XML
document.
HierSemanticType class represents information about
a specific semantic type in the network including its name, unique
identifier, tree number, definition, usage note, non-human flag,
parent unique identifier and any children the semantic type may have.HierSemanticType.
HierSemanticType instance
from the arguments which represent the structure of the XML
document.
HierSemanticTypeVector class represents a collection of
HierSemanticType maintained within a Vector.Vector's values.
HierSemanticTypeVector's values.
HierSemanticTypeVector instance
from the arguments which represent the structure of the XML
document.
identity method returns the identity assigned to this
instance of the retriever.
initializeProps method reads the properties
file specified as an argument and adds those properties to the
list of system properties, overwriting those that have
already been initialized.
KSCuiVector class represents a
Vector of KS objects that in addition to being
instances of
KSVector,
they also have a CUI and CN associated with them.Vector's values and sets
the XML container string and version to the argument values.
KSCuiVector's values and sets
the XML container string and version to the argument values.
Vector's values.
Vector's values.
KSCuiVector instance
from the XML document passed as an argument and sets the
surrounding XML tag and XML structure version to the arguments.
KSObject class represents a
KS object that has an associated
query description and UMLS release designation.KSVector class represents a
Vector of a KS String
objects that has an associated
query description.Vector's values and sets
the XML container string and version to the argument values.
Vector's values.
KSStringVector's values and
sets the XML container string and version to the argument
values.
Vector's values.
KSVector class represents a
Vector of a KS object that has an associated
query description.Vector's values and sets
the XML container string and version to the argument values.
KSVector's values and sets
the XML container string and version to the argument values.
Vector's values.
KSVector's values.
LUIExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request for the LUI(s) for a given term name.LUIExecutor,
with empty contents.
LUIExecutor,
initializing the appropriate members.
LUIExecutor,
initializing the appropriate members.
LexicalRecord class is a wrapper subclass of
gov.nih.nlm.nls.lexCheck.Lib.LexRecord that
encapsulates the details of reading/writing to/from an XML
document.LexicalRecord instance
from the gov.nih.nlm.nls.lexCheck.Lib.LexRecord
passed as an argument.
LexicalRecordVector class represents a collection
of LexicalRecord instances maintained within a
Vector.Vector's values.
LexicalRecordVector's values.
LexicalRecordVector
instance from the arguments which represent the structure of
the XML document.
LexicalRecordsExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request for the SPECIALIST Lexicon lexical records for
a given term.LexicalRecordsExecutor,
with empty contents.
LexicalRecordsExecutor,
initializing the appropriate members.
LexicalRecordsExecutor,
initializing the appropriate members.
ListCooccurrenceTypesExecutor will parse the XML query
found in either
a String or a char[] and interpret that
query as the request for all of the cooccurrence types.ListCooccurrenceTypesExecutor,
with empty contents.
ListCooccurrenceTypesExecutor,
initializing the appropriate members.
ListCooccurrenceTypesExecutor,
initializing the appropriate members.
ListDictsExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request for the list of spelling dictionaries that can be
used during the suggestSpelling method.ListDictsExecutor,
with empty contents.
ListDictsExecutor,
initializing the appropriate members.
ListDictsExecutor,
initializing the appropriate members.
ListDocEntryTypesExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request for all of the document metadata entry types.ListDocEntryTypesExecutor,
with empty contents.
ListDocEntryTypesExecutor,
initializing the appropriate members.
ListDocEntryTypesExecutor,
initializing the appropriate members.
ListMeSHQualsExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request for all of the MeSH qualifiers.ListMeSHQualsExecutor,
with empty contents.
ListMeSHQualsExecutor,
initializing the appropriate members.
ListMeSHQualsExecutor,
initializing the appropriate members.
ListMetaTableNamesExecutor will parse the XML query
found in either
a String or a char[] and interpret that
query as the request for all of Metathesaurus table names that
can be sent as arguments to the getRawRecords API method.ListMetaTableNamesExecutor,
with empty contents.
ListMetaTableNamesExecutor,
initializing the appropriate members.
ListMetaTableNamesExecutor,
initializing the appropriate members.
ListRelationTypesExecutor will parse the XML query
found in either
a String or a char[] and interpret that
query as the request for all of the cooccurrence types.ListRelationTypesExecutor,
with empty contents.
ListRelationTypesExecutor,
initializing the appropriate members.
ListRelationTypesExecutor,
initializing the appropriate members.
ListSemGroupsExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request to return the list of semantic groups.ListSemGroupsExecutor,
with empty contents.
ListSemGroupsExecutor,
initializing the appropriate members.
ListSemGroupsExecutor,
initializing the appropriate members.
ListSemNetTableNamesExecutor will parse the XML query
found in either
a String or a char[] and interpret that
query as the request for all of Metathesaurus table names that
can be sent as arguments to the getRawRecords API method.ListSemNetTableNamesExecutor,
with empty contents.
ListSemNetTableNamesExecutor,
initializing the appropriate members.
ListSemNetTableNamesExecutor,
initializing the appropriate members.
ListSemRelIdsExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request to return the list of semantic relation identifiers
(name, TUI, and indicator of identifier type).ListSemRelIdsExecutor,
with empty contents.
ListSemRelIdsExecutor,
initializing the appropriate members.
ListSemRelIdsExecutor,
initializing the appropriate members.
ListSemTypeForGroupExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request to return the list of semantic types found within
the requested semantic group.ListSemTypeForGroupExecutor,
with empty contents.
ListSemTypeForGroupExecutor,
initializing the appropriate members.
ListSemTypeForGroupExecutor,
initializing the appropriate members.
ListSemTypeIdsExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request to return the list of semantic type identifiers
(name, TUI, and indicator of identifier type).ListSemTypeIdsExecutor,
with empty contents.
ListSemTypeIdsExecutor,
initializing the appropriate members.
ListSemTypeIdsExecutor,
initializing the appropriate members.
ListSrcExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request for all of the sources.ListSrcExecutor,
with empty contents.
ListSrcExecutor,
initializing the appropriate members.
ListSrcExecutor,
initializing the appropriate members.
ListStrAttrsExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request for all of the string attributes.ListStrAttrsExecutor,
with empty contents.
ListStrAttrsExecutor,
initializing the appropriate members.
ListStrAttrsExecutor,
initializing the appropriate members.
ListStringTypesExecutor will parse the XML query
found in either
a String or a char[] and interpret that
query as the request for all of the cooccurrence types.ListStringTypesExecutor,
with empty contents.
ListStringTypesExecutor,
initializing the appropriate members.
ListStringTypesExecutor,
initializing the appropriate members.
ListTermTypesExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request for all of the term types.ListTermTypesExecutor,
with empty contents.
ListTermTypesExecutor,
initializing the appropriate members.
ListTermTypesExecutor,
initializing the appropriate members.
Locator class represents information about a
particular locator.Locator
with empty contents.
Locator from the
arguments.
Locator instance from the
arguments which represent the XMl document structure.
LocatorExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request for the locators for a given CUI.LocatorExecutor,
with empty contents.
LocatorExecutor,
initializing the appropriate members.
LocatorExecutor,
initializing the appropriate members.
LocatorVector class represents a collection of
Locator maintained within a Vector.LocatorVector instance from
the arguments which represent the structure of the XML document.
listCooccurrenceTypes method returns the set
of cooccurrence type mappings which consists of the cooccurrence type
code (2-5 characters) and a description of the cooccurrence type.
listDictionaries method returns the set of
dictionaries that may be used for spell checking.
listDocEntryTypes method metadata associated with
pieces of the Metathesaurus as described in the
'mrdoc' table.
listMeSHQuals method returns the set
of MeSH Qualifiers which consists of the MeSH qualifier
code (2-3 characters) and a description of the qualifier.
listMetaTableNames method returns the list of
table names that can be used as arguments to the
getRawRecords method.
listRelationTypes method returns the set
of relation type mappings which consists of the relation type
code (2-5 characters) and a description of the relation type.
listSemGroups method returns a list of
valid semantic type groupings.
listSemNetTableNames method returns the list of
table names that can be used as arguments to the
getSemNetASCIIRecords method.
listSemRelationIds method returns a list of possible
relation names/tui pairs, either of which can be passed to the
getHierSemanticRelationProperties,
getAssociativeRelations, or
getSemNetRelRelRelations methods.
listSemTypeIds method returns a list of possible
semantic type names/tui pairs, either of which can be passed to the
getAssociativeRelations or the
getSemTypeProperties methods.
listSemTypes method returns a list of
semantic type names/tui pairs that belong to the requested
semantic type grouping.
listSources method returns all of the source
triplets containing the source abbreviation, the
source's short name, and the source's official
long name in XML.
listSources method returns all of the source
triplets for the specified UMLS year containing the source
abbreviation, the source's short name, and the source's official
long name in XML.
listStrAttrs method returns the set
of string attributes descriptions which consists of the attribute
abbreviation (2-3 characters) and a description of the attribute.
listStringTypes method returns the set
of string type mappings which consists of the string type
code (2-5 characters) and a description of the string type.
listTermTypes method returns the set
of term type mappings which consists of the term type
code (2-5 characters) and a description of the term type.
logicalEquivATV method returns a string containing
the logical equivalent for the ATV given the attribute name (atn).
logicalEquivCN method returns a string containing
the logical equivalent for the concept name given.
logicalEquivCXS method returns a string containing
the logical equivalent for the string.
logicalEquivSAB method returns a string containing
the logical equivalent for the source abbreviation.
lookup method looks up an attribute name
in the mapHash and returns the Attr object as
its value.
MeSHEntriesExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request for the MeSH Entries for a given term.MeSHEntriesExecutor,
with empty contents.
MeSHEntriesExecutor,
initializing the appropriate members.
MeSHEntriesExecutor,
initializing the appropriate members.
MeSHEntry class represents information about a
particular MeSH entry.MeSHEntry with empty contents.
MeSHEntry instance from the
arguments which represent the structure of the XML document.
MeSHEntryVector class represents a collection of
MeSHEntry maintained within a Vector.MeSHEntry
using the argument Vector's values.
MeSHEntry
using the argument MeSHEntryVector's values.
MeSHEntry.
MeSHEntryVector instance
from the arguments which represent the structure of the XML document.
MeSHInfo class represents information about a
particular MeSH term for a specific DUI.MeSHInfo
with empty contents.
MeSHInfo
from the arguments.
MeSHInfo
from the arguments.
MeSHInfo instance from the
arguments which represent the structure of the XML document.
MeSHInfoExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request for the MeSH Info for a given DUI.MeSHInfoExecutor,
with empty contents.
MeSHInfoExecutor,
initializing the appropriate members.
MeSHInfoExecutor,
initializing the appropriate members.
MeSHInfoVector class represents a collection of
MeSHInfo maintained within a Vector.MeSHInfo
using the argument Vector's values.
MeSHInfo
using the argument MeSHInfoVector's values.
MeSHInfo.
MeSHInfoVector instance
from the arguments which represent the structure of the XML document.
MeSHQualifier class represents information about the
MeSH Qualifiers.MeSHQualifier with
empty contents.
MeSHQualifier using the
2-character code and the string qualifier name.
Source instance from the
arguments which represent the structure of the XMl document.
MeSHQualifierVector class represents a collection of
MeSHQualifier maintained within a Vector.Vector's values.
MeSHQualifierVector's values.
MeSHQualifierVector
instance from the arguments which represent the structure of
the XML document.
main is a command-line entry point for unit testing the
class.
main is a command-line entry point for unit
testing the class.
main is a command-line entry point for unit
testing the class.
main is a command-line entry point for unit
testing the class.
main is a command-line entry point for unit
testing the class.
main is a command-line entry point for unit
testing this class.
main is a command-line entry point for unit
testing this class.
main is a command-line entry point for unit testing the
class.
main is a command-line entry point for unit testing the
class.
main is a command-line entry point for unit testing the
class.
main is a command-line entry point for unit testing the
class.
main is a command-line entry point for unit testing the
class.
main is a command-line entry point for unit testing the
class.
main is a command-line entry point for unit testing the
class.
main is a command-line entry point for unit testing the
class.
main is a command-line entry point for unit testing the
class.
main is a command-line entry point for unit testing the
class.
main is a command-line entry point for unit testing the
class.
main is a command-line entry point for unit testing the
class.
main is a command-line entry point for unit testing the
class.
main is a command-line entry point for unit testing the
class.
main is a command-line entry point for unit testing the
class.
main is a command-line entry point for unit testing the
class.
main is a command-line entry point for unit testing the
class.
main is a command-line entry point for unit testing the
class.
main is a command-line entry point for unit
testing this class.
main is a command-line entry point for unit testing
the class.
main is a command-line entry point for unit testing the
class.
main is a command-line entry point for unit testing the
class.
main is a command-line entry point for unit testing the
class.
main is a command-line entry point for unit testing the
class.
main is a command-line entry point for unit testing the
class.
main is a command-line entry point for
unit testing the class.
main is a command-line entry point for unit testing the
class.
main is a command-line entry point for unit testing the
class.
main is a command-line entry point for unit testing the
class.
main is a command-line entry point for unit testing the
class.
StandardQueryExecutor
class.
main uses the first argument, the properties
file name, to initialize the system properties, and then
calls each of the public functions of the class for unit
testing.
main is a command-line entry point for unit
testing this class.
output method pretty prints the
associated expresion object to standard output.
output method pretty prints the
AttributeContext to standard output.
output method pretty prints the attribute and its
value to standard output.
output method pretty prints the
ConceptAttribute to standard output.
output method pretty prints the
RelationshipAttribute to standard output.
output method pretty prints the
StringAttribute to standard output.
output method pretty prints the
TermAttribute to standard output.
output method pretty prints the concept's
terms, definitions, semantic types, context, relationships,
coocurrences, string attributes and associated expressions to
standard output.
output method pretty prints the concept's
unique identifier and name to standard output.
output method pretty prints the definition to
standard output.
output method pretty prints the semantic type object
to standard output.
output method pretty prints this instance to
standard output.
output method pretty prints the string's
unique identifier and name to standard output.
output method pretty prints the
StringInfo instance to standard output.
output method pretty prints this instance to
standard output.
output method prestt prints the term's
type and description to standard output.
output method pretty prints the instance to
standard output.
output method pretty prints the term's
unique identifier and name to standard output.
output method pretty prints the term's
type and description to standard output.
output method pretty prints the instance to
standard output.
output method pretty prints the context to
standard output.
output method pretty prints the context member to
standard output.
output method pretty prints the source context to
standard output.
output method pretty prints this instance
to standard output.
output method pretty prints the co-occurrence
context to standard output.
output method precot prints the term's
type and description to standard output.
output method pretty prints the co-occurring concept.
output method pretty prints the
QualifierFrequency to standard output.
output method pretty prints the locator
to standard output.
output method prettyy prints the MeSH entry
to standard output.
output method prettyy prints the MeSH info
to standard output.
output method pretty prints the relation to
standard output.
output method pretty prints the relation to
standard output.
output method prerel prints the term's
type and description to standard output.
output method pretty prints the
associative relation to standard output.
output method pretty prints the relation to
standard output.
output method pretty prints the semantic
relation to standard output.
output method pretty prints the relation to
standard output.
output method pretty prints the semantic type to
standard output.
output method pretty prints the semantic group to
standard output.
output method pretty prints the semantic type to
standard output.
parse method should be overridden by
subclasses to provide the implementation for parsing
the XML from its root element and adding the elements
to the vector.
parse method must be overridden by subclasses
to provide the implementation for parsing the XML from its
root element and adding the elements to the instance.
parse method is overridden from the parent
to handle reading of each of the elements in the XML document.
parse method must be overridden by subclasses
to provide the implementation for parsing the XML from its
root element and adding the elements to the vector.
parse parses the XML document structure and
populates the vector with the entry contents.
DocEntryType
instance from the arguments which describe the structure
of the XML document.
parse parses the XML document structure and populates
the vector with the entry contents.
parse parses the XML document structure and populates
the vector with the entry contents.
parse parses the XML document structure and populates
the vector with the entry contents.
parse parses the XML document structure and populates
the vector with the entry contents.
parse parses the XML document structure and populates
the vector with the entry contents.
parse parses the XML document structure and populates
the vector with the entry contents.
parse parses the XML document structure and populates
the vector with the entry contents.
parse parses the XML document structure and populates
the vector with the entry contents.
parse parses the XML document structure and populates
the vector with the entry contents.
parse parses the XML document structure and populates
the vector with the entry contents.
parse parses the XML document structure and populates
the vector with the entry contents.
parse parses the XML document structure and populates
the vector with the entry contents.
parse parses the XML document structure and populates
the vector with the entry contents.
parse parses the XML document structure and populates
the vector with the entry contents.
parse parses the XML document structure and populates
the vector with the entry contents.
parse parses the XML document structure and populates
the vector with the entry contents.
parse parses the XML document structure and populates
the vector with the entry contents.
parse parses the XML document structure and populates
the vector with the entry contents.
parse parses the XML document structure and populates
the vector with the entry contents.
parse parses the XML document structure and populates
the vector with the entry contents.
parse parses the XML document structure and populates
the vector with the entry contents.
parse parses the XML document structure and populates
the vector with the entry contents.
parse parses the XML document structure and populates
the vector with the entry contents.
parse parses the XML document structure and populates
the vector with the entry contents.
parse parses the XML document structure and populates
the vector with the entry contents.
parse parses the XML document structure and populates
the vector with the entry contents.
parse parses the XML document structure and populates
the vector with the entry contents.
parse parses the XML document structure and populates
the vector with the entry contents.
parse parses the XML document structure and
populates the vector with the entry contents.
parse parses the XML document structure and
populates the vector with the entry contents.
parse parses the XML document structure and populates
the vector with the entry contents.
parse parses the XML document structure and
populates the vector with the entry contents.
parse parses the XML document structure and populates
the vector with the entry contents.
parse parses the XML document structure and populates
the vector with the entry contents.
parse parses the XML document structure and populates
the vector with the entry contents.
parse parses the XML document structure and populates
the vector with the entry contents.
QualifierFrequency class represents information
about the MeSH Qualifier frequencies.QualifierFrequency
instance with empty contents.
QualifierFrequency
instance using the MeSH qualifier information and the frequency
passed as arguments.
QualifierFrequency
instance from the argument string which contains the
QualifierFrequency in XML format.
QualifierFrequencyVector class represents a collection of
QualifierFrequency maintained within a Vector.Vector's values.
QueryExecutor is the parent class of the various
executors of standard queries.query method executes an expert query written in XML
passed as an argument against the UMLS release and returns the
result in XML.
RawRecordsExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request for the raw records for a given CUI.RawRecordsExecutor,
with empty contents.
RawRecordsExecutor,
initializing the appropriate members.
RawRecordsExecutor,
initializing the appropriate members.
RelSource class represents information about
a particular relationship between two concepts.RelSource with empty contents.
RelSource instance
from the arguments which represent the structure of the
XML document.
Relation class represents information about
a particular relationship between two concepts.Relation
with empty contents.
Relation(Element, Namespace)
constructor instead and then set the CUI.
Relation(Element, Namespace)
constructor instead and then set the CUI.
RelationType class represents the pairing of a
relation type identifier with its description.RelationType instance
with empty contents.
RelationType instance
with the argument relation type and description.
RelationType instance
from the argument Element which contains the
RelationType as a JDOM document ready
for parsing.
RelationTypeVector class represents a collection of
RelationType instances maintained within a Vector structure.RelationTypeVector
instance from the argument string which contains the
RelationTypeVector in XML form.
RelationVector class represents a collection of
Relation maintained within a Vector.Vector's values.
RelationVector's values.
RelationVector instance from the
arguments which represent the structure of the XML document.
RelationsExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request for the relations for a given CUI.RelationsExecutor,
with empty contents.
RelationsExecutor,
initializing the appropriate members.
RelationsExecutor,
initializing the appropriate members.
RelationshipAttribute class represents information
about the string attributes of a Metathesaurus relationship.RelationshipAttribute instance passed as an argument.
RelationshipAttribute instance
from the arguments which describe the structure of the XML
document.
RelationshipAttributeVector class represents a collection of
RelationshipAttributes maintained within a Vector.Vector's values.
RelationshipAttributeVector's values.
RelationshipAttributeVector
instance from the argument string which contains the
RelationshipAttributeVector in XML form.
RelationshipAttrsExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request for the relationship attributes for a given CUI.RelationshipAttrsExecutor,
with empty contents.
RelationshipAttrsExecutor,
initializing the appropriate members.
RelationshipAttrsExecutor,
initializing the appropriate members.
ReleaseDelta class represents the
changes that have taken place to the UMLS for a specific UMLS release.ReleaseDelta
instance with empty contents.
ReleaseDelta
instance from the argument UMLS release and Vector
of ConceptDeltas.
ReleaseDelta
instance from the arguments which describe the structure
of the XML document.
ReleaseDeltaVector class represents a collection
of ReleaseDelta maintained within a
Vector.Vector's values.
Vector's values.
ReleaseDeltaVector
instance from the argument string which contains the
ReleaseDeltaVector in XML form.
replaceSQ method replaces a single quote (')
character with two single quotes ('').
replaceSQ method replaces a single quote (')
character with the specified escape character.
request parses the string as defined by the subclass
to build and execute a request to the KSSRetrieverV5_0.
request parses the character data as appropriate to
build a request to the KSSRetrieverV5_0.
request parses the string as appropriate to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string as defined by the subclass
to build and execute a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string as defined by the subclass
to build and execute a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
request parses the string to
build a request to the KSSRetrieverV5_0.
SUIExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request for the SUI for a given string.SUIExecutor,
with empty contents.
SUIExecutor,
initializing the appropriate members.
SUIExecutor,
initializing the appropriate members.
SemGroup class represents information about
a particular semantic grouping established for the Semantic Network.SemGroup.
SemGroup instance from the
arguments which represent the structure of the XML document.
SemGroupExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request to locate semantic group for the requested
concept unique identifier.SemGroupExecutor,
with empty contents.
SemGroupExecutor,
initializing the appropriate members.
SemGroupExecutor,
initializing the appropriate members.
SemGroupVector class represents a collection of
SemGroup maintained within a Vector.Vector's values.
SemGroupVector's values.
SemGroupVector instance
from the arguments which represent the structure of the XML
document.
SemNetASCIIExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request the list of ASCII records for the table requested.SemNetASCIIExecutor,
with empty contents.
SemNetASCIIExecutor,
initializing the appropriate members.
SemNetASCIIExecutor,
initializing the appropriate members.
SemNetConstants class contains constants used by
the object model representing the Semantic Network.SemNetId class represents information about
a specific identifier found within the Semantic Network, including
its human-readable name, its identifier, and an indicator for the
type of the identifier (semantic type or semantic relation).SemNetId.
SemNetId instance from the
arguments which represent the structure of the XML document.
SemNetIdVector class represents a collection of
SemNetId maintained within a Vector.Vector's values.
SemNetIdVector's values.
SemNetIdVector instance
from the arguments which represent the structure of the XML
document.
SemQueryExecutor is the parent class of the various
executors of Semantic Network queries.SemRelAncsExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request to locate the semantic relation ancestors for the given
semantic relation name.SemRelAncsExecutor,
with empty contents.
SemRelAncsExecutor,
initializing the appropriate members.
SemRelAncsExecutor,
initializing the appropriate members.
SemRelPropsExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request to locate semantic relation properties for the given
semantic relation name.SemRelPropsExecutor,
with empty contents.
SemRelPropsExecutor,
initializing the appropriate members.
SemRelPropsExecutor,
initializing the appropriate members.
SemType class represents the Semantic Type for a concept.SemType
with empty contents.
SemType using
the type unique identifier and the semantic type name arguments.
SemType instance from the
argument string which contains the SemType in XML format.
SemTypeAncsExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request to locate the semantic type ancestors for the given
semantic type name.SemTypeAncsExecutor,
with empty contents.
SemTypeAncsExecutor,
initializing the appropriate members.
SemTypeAncsExecutor,
initializing the appropriate members.
SemTypeExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request for the semantic types for a given CUI.SemTypeExecutor,
with empty contents.
SemTypeExecutor,
initializing the appropriate members.
SemTypeExecutor,
initializing the appropriate members.
SemTypePropsExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request to locate semantic type properties for the given
semantic type name.SemTypePropsExecutor,
with empty contents.
SemTypePropsExecutor,
initializing the appropriate members.
SemTypePropsExecutor,
initializing the appropriate members.
SemTypeSibsExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request the semantic type siblings for the given
semantic type name.SemTypeSibsExecutor,
with empty contents.
SemTypeSibsExecutor,
initializing the appropriate members.
SemTypeSibsExecutor,
initializing the appropriate members.
SemTypeVector class represents a collection of
SemType instances kept within a Vector.SemType
instances copying the contents of the argument vector.
SemType
instances copying the contents of the argument vector.
SemTypeVector instance from the
argument string which contains the SemTypeVector in XML
format.
SoftwareExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request for the Current Software Version.SoftwareExecutor,
with empty contents.
SoftwareExecutor,
initializing the appropriate members.
SoftwareExecutor,
initializing the appropriate members.
Source class represents information about a UMLS
source.Source instance
with blanks for all members.
Source instance from the root
source abbreviation, the full source name, and the nickname for the
source passed as arguments.
Source instance from
the instance passed.
Source instance from the
arguments which represent the structure of the XMl document.
SourceCxt class represents the context grouping showing the
group of relatives for the source named.SourceCxt instance from the
argument string which contains the SourceCxt in XML format.
SourceInfo class represents the atomic level source
information for a particular string.SourceInfo instance
with empty contents.
SourceInfo instance
by copying the values from the argument instance.
SourceInfo instance using
the argument details.
SourceInfo instance from the
argument string which contains the SourceInfo in XML
format.
SourceV2_1 class represents information about a UMLS
source.SourceV2_1 instance
will blank member values.
SourceV2_1 instance from the
arguments which represent the structure of the XMl document.
SourceVector class represents a collection of
Source maintained within a Vector.Vector's values.
SourceVector's values.
SourceVector instance from the
arguments which represent the structure of the XML document.
SpellingExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request for suggestions of spelling.SpellingExecutor,
with empty contents.
SpellingExecutor,
initializing the appropriate members.
SpellingExecutor,
initializing the appropriate members.
SpellingSuggestionsVector class represents
a collection of String containing spelling
suggestions for a given input term.Vector's values.
SpellingSuggestionsVector's
values.
Vector's values and sets
the original spelling request term to the argument.
SpellingSuggestionsVector from
the XML document passed as an argument.
StandardQueryExecutor provides a means of "translating"
an XML command request, with a specific form, and executing the
appropriate KSSRetrieverV5_0 function to issue the command.StandardQueryExecutor,
with empty contents.
StandardQueryExecutor,
initializing the appropriate members.
StandardQueryExecutor,
using the server instance passed to execute the requests.
StringAttribute class represents information about
attributes of a string.StringAttribute instance
with empty contents.
StringAttribute instance
from the StringInfo passed as an argument.
StringAttribute instance
from the arguments which describe the structure of the XML document.
StringAttrsExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request for the StringAttrs for a given CUI.StringAttrsExecutor,
with empty contents.
StringAttrsExecutor,
initializing the appropriate members.
StringAttrsExecutor,
initializing the appropriate members.
StringCxt class represents the context grouping
based on a source abbreviation and string code.StringCxt instance
with empty contents.
StringCxt instance
using the source abbreviation, source concept code and a
set of source contexts.
StringCxt instance
using the source abbreviation, source concept code, the atomic
identifier for the source string, and a
set of source contexts.
StringCxt instance
using the source abbreviation and the source concept code;
the source contexts are set to empty.
StringCxt instance from the
argument string which contains the StringCxt in XML format.
StringId class represents the pairing of a string
identifier with a string.StringId instance
with empty contents.
StringId instance with the
argument string unique identifier and its name.
StringId instance with the
argument string unique identifier, its name and the sources
in which the string appears.
StringId instance from the
argument Element which contains the StringId
as a JDOM document ready for parsing.
StringIdVector class represents a collection of StringId instances
maintained within a Vector structure.StringIdVector instance from
the argument string which contains the StringIdVector
in XML form.
StringInfo class represents the string information for
the Term include the string unique identifier, the string name, and
the string type.StringInfo instance
with empty contents.
StringInfo instance using the
source unique identifier, the string type, and the string name.
StringInfo instance from the
arguments which describe the structure of the XML document.
StringSource class represents the source information
for a particular string.StringSource instance
with empty contents.
StringSource instance
by copying the values from the argument instance.
StringSource() method and then the
appropriate "set" methods.
StringSource instance from the
argument string which contains the StringSource in XML
format.
StringType class represents the pairing of a
string type identifier with its description.StringType instance
with empty contents.
StringType instance
with the argument string type and description.
StringType instance
from the argument Element which contains the
StringType as a JDOM document ready
for parsing.
StringTypeVector class represents a collection of
StringType instances maintained within a Vector structure.StringTypeVector
instance from the argument string which contains the
StringTypeVector in XML form.
StringsForSUIExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request for the strings for a given SUI.StringsForSUIExecutor,
with empty contents.
StringsForSUIExecutor,
initializing the appropriate members.
StringsForSUIExecutor,
initializing the appropriate members.
setAT method sets the Attr
associated with this instance to the argument value.
setATUI method sets the attribute unique
identifier associated with this instance.
setATUI method sets the attribute unique identifier.
setATUI method sets the string attribute identifier.
setATV method sets the attribute value
associated with this instance.
setATX method sets the associated expression value
to the argument String.
setATXs method sets the associated expressions for
this concept.
setAUI method sets the atom unique identifier.
setAUI method sets the atomic unique identifier.
setAUI method sets the atomic identifier
as a string.
setAUI method sets the AUI field.
setAUI method sets the atom unique identifier
for the related concept.
setAUI method sets the atom unique identifier
within this concept involved in the relation.
setAUI1 method sets the atom unique identifier
for concept 1.
setAUI2 method sets the
value of the atom unique identifier.
setAUI2 method sets a String containing
the atomic identifier.
setAbbrev method sets the abbreviation of the
semantic relation to the argument.
setAbbrev method sets the abbreviation of the semantic
type to the argument.
setAbbrev method sets the abbreviation of the
semantic group to the argument.
setAttrNameList method sets the attribute name
list for the source to the argument.
setAttribs method sets the attribute values
of the source to the argument vector.
setAttribs method sets the set of
AttributeContext instances to be associated
with instance.
setAttribs method sets the set of
AttributeContext instances to be associated
with instance.
setAttribs method sets the attribute contexts for this
StringAttribute instance to the argument vector of contexts.
setAttribs method sets the set of
StringAttribute instances to be associated with instance.
setAutoGen method sets the auto-generated
flag indicating the relation was generated by software and
is unverified.
setCCP method sets this instance's value for
the context using the context name, concept unique identifier,
the hierarchical code, the relation, and the children flag
passed as arguments.
setCCP method sets this instance's value for
the context using the context name, concept unique identifier,
the hierarchical code, the relation, and the children flag
passed as arguments.
setCN method sets the concept name
to the argument.
setCN method sets the concept name for this
concept to the argument cn.
setCN method sets the concept name for this
concept to the argument name.
setCN method sets the concept name
for the related concept.
setCN method sets the concept name
for this concept in the relation.
setCOCs method sets the cooccurrences for this
concept.
setCOF method sets the frequency of
the co-occurrence.
setCOT method sets a String containing
the co-occurrence type.
setCOT method sets the cooccurrence type
for this cooccurrence to the argument type.
setCUI method sets the concept unique identifier
to the argument.
setCUI method sets the cui associated
with this instance to the argument.
setCUI method sets the concept unique identifier
for this concept to the argument cui.
setCUI method sets the concept unique identifier
for this concept to the argument cui.
setCUI method sets the CUI
to the argument String.
setCUI method sets the concept unique identifier
for the related concept.
setCUI method sets the concept unique
identifier for this concept in the relation.
setCUI2 method sets the
value of the concept unique identifier.
setCUIFrequency method sets the CUI
frequency for the source to the argument.
setCXN method sets the context name to the argument.
setCXS method sets the
value of the context member string.
setCXT method sets the group of contexts
for this instance to the argument Vector of
StringCxt instances.
setCXT method sets the source contexts to the
argument Vector.
setCXTs method sets the contexts for this concept.
setChangeType method sets the type of change
made to the concept to the argument.
setCharEncode method sets the character encoding
for the source to the argument.
setChildren method sets the list of children
relations as a HierSemanticRelationVector for the
semantic relation to the argument list.
setChildren method sets the list of children
types as a HierSemanticTypeVector for the semantic type
to the argument list.
setChildrenUIs method sets the list of children
UIs as a Vector of String for
the semantic relation to the argument list.
setChildrenUIs method sets the list of children
UIs as a Vector of String for
the semantic type to the argument list.
setCoContexts method sets the set of contexts
to the argument
vector of COContext instances.
setCode method sets the 2-character code.
setCon method sets the Concept
associated with this instance.
setCon1 method sets the Concept
instance for concept 1.
Concept objects are no longer
held by this object, only its CUI and concept name.
setCon2 method sets the Concept
instance for concept 2.
Concept objects are no longer
held by this object, only its CUI and concept name.
The RelSource instances hold the information about
the related concept.
setContentContact method sets the content
contact information for the source to the argument.
setContext method sets the context
type for the source to the argument.
setCurrentVersion method sets the current version
flag for the source to the argument.
setDEF method sets the definition string.
setDUI method sets the string unique identifier (DUI)
for this instance.
setDef method sets the definition of the
semantic relation to the argument.
setDef method sets the definition of the
semantic type to the argument.
setDefs method sets the definitions for this concept.
setDeltas method sets the Vector
of ConceptDelta instances that describe the changes
to the UMLS to the argument.
setDescription method sets the description
to the argument String.
setDictionary sets the dictionary for the spelling
term to the argument String.
setDirected method sets the directionality
of the relation to either true or false.
setExamples method sets the set of examples
of the semantic type to the argument.
setExists method sets the existence flag to
the argument.
setExists method sets the existence flag to
the argument.
setFR method sets the frequency of the concepts
in the source.
setFamily method sets the family for the
source to the argument.
setFrequency method sets the string
containing the frequency for this instance.
setHCD method sets the
value of the hierarchical code.
setISN method sets the information source field.
setInsert method sets the Metathesuarus insert
version for the source to the argument.
setInverse method sets the inverse semantic
relation name of the semantic relation to the argument.
setLAT method sets the language for this
string id to the argument name.
setLAT method sets the language for this
term id to the argument name.
setLHS method sets the left-hand semantic type
of the semantic relation triplet to the argument.
setLHSSemRel method sets the LHS
semantic relation to the argument.
setLHSSemType method sets the LHS
semantic type to the argument.
setLOCs method sets the locators for this concept.
setLUI method sets the term unique identifier
for this term id to the argument lui.
setLUI method sets the LUI field.
setLanguage method sets the language
for the source to the argument.
setLicenseContact method sets the license
contact information for the source to the argument.
setLinkStatus method sets the link status
of the semantic relation triplet to the argument.
setMergeCUI method sets the CUI value for
concept into which the old concept was merged
to the argument String.
setMetaEnd method sets the Metathesuarus end
date for the source to the argument.
setMetaStart method sets the Metathesuarus start
date for the source to the argument.
setNHFlag method sets the non-human flag
of the semantic type to the argument.
setName method sets the string qualifier name.
setName method sets the source's full name.
setName method sets the name of the semantic
relation to the argument.
setName method sets the name of the semantic type
to the argument.
setName method sets the name of the semantic group
to the argument.
setName method sets the name of the semantic identifier
to the argument.
setNickName method sets the nickname for the source.
setNonInheritable method sets the non-inheritable
flag for the semantic relation to the argument.
setParentUI method sets the parent UI of the semantic
relation to the argument.
setParentUI method sets the parent UI of the semantic
type to the argument.
setPreferred method sets this term's preferred
attribute to the boolean value passed.
setQualifier method sets the MeSH qualifier
details in a MeSHQualifier instance.
setQualifiers method sets the qualifier frequencies
to the set passed as an argument.
setQuery method sets the query string to
the argument string.
setQuery method sets the query string to
the argument string.
setRCUI method sets the root CUI for the
SRC concept to the argument.
setREL method sets the relation name
to the argument String.
setREL method sets the
value of the relationship.
setREL method sets the relation type
for this relation to the argument type.
setRHS method sets the right-hand semantic type
of the semantic relation triplet to the argument.
setRHSSemRel method sets the RHS
semantic relation to the argument.
setRHSSemType method sets the RHS
semantic type to the argument.
setRSAB method sets the root source
abbreviation to the argument (equivalent to
SourceV2_1.setSAB(rsab)).
setRUI method sets the rui associated
with this instance to the argument.
setRUI method sets the relation identifier.
setRank method sets the
value of the rank.
setRel method sets the relation name for
the relationship between the two concepts.
setRelA method sets the relation attribute
attributed by the source.
RelSource instances for this
relation to the argument set.
setRelation method sets the relation
to the argument.
setRelation method sets the right-hand
semantic type of the semantic relation triplet to the argument.
setRelation method sets the relation
to the argument.
setRelease method sets the UMLS release to
the argument.
setRelease method sets the UMLS release to the argument.
setRelease method sets the UMLS release
to the argument String.
setRels method sets the relations for this concept.
setRemove method sets the Metathesuarus removal
version for the source to the argument.
setSAB method sets the source abbreviation
to the argument String.
setSAB method sets the source abbreviation.
setSAB method sets the string abbreviation.
setSAB method sets the source abbreviation for
this instance.
setSAB sets the source abbreviation from
which this relation was created/derived.
setSAB method sets the root source abbreviation.
setSATUI method sets the attribute source
asserted attribute unique identifier
associated with this instance.
setSATUI method sets the source asserted
attribute unique identifier.
setSATs method sets the string attributes for
this concept.
setSAUI method sets the source asserted
atomic identifier.
setSCD method sets the source code.
setSCD method sets the source code descriptor.
setSCD method sets the source concept code
as a string.
setSCD method sets the SCD field.
setSCIT method sets the source citation
for the source to the argument.
setSCUI method sets the source asserted concept id.
setSDUI method sets the source asserted descriptor id.
setSL method sets the abbreviation of the
relation label.
setSNA method sets the actual name field.
setSOUI method sets the unique id of record in
the source.
setSRL method sets the source restriction level.
setSRUI sets the source relation unique
identifier.
setSS method sets the group of string sources
associated with this instance to the argument string sources.
setSTR method sets the string representation
associated with this instance to the argument value.
setSTR method sets the STR field.
setSTT method sets the string type
associated with this instance to the argument value.
setSTT method sets the string type
for this string to the argument type.
setSTY method sets the string semantic type.
setSTYs method sets the semantic types for this
concept.
setSUI method sets the string unique identifier
for this string id to the argument sui.
setSUI method sets the string unique identifier
associated with this instance to the argument value.
setSUI method sets the string unique
identifier (SUI) for this instance.
setSUI method sets the string unique identifier.
setSUI method sets the string unique identifier.
setSabin method sets the sabin
flag for the source to the argument.
setSemTypeIds method sets the semantic type identifiers
to the argument.
setSource method sets the Source
instance to the argument.
setSource method sets the Source instance
defining the source of the co-occurrence.
setSpellingTerm sets the original spelling
term to the argument String.
setSrcInfos method sets the group of source information
associated with this instance to the argument string source information.
setString method sets the string for this
string id to the argument name.
setStringInfo method sets the
StringInfo
instance containing the string of this attribute.
setStringSources method sets the string source
details to the argument.
setStringSources method sets the string source
details to the argument.
setSubtype method sets the subtype
to the argument String.
setSuppressible method sets the source suppressibility
for the string.
setSuppressible method sets the source suppressibility
for the string.
setTN method sets the Term Name.
setTTY method sets the term type.
setTTY method sets the term type.
setTTY method sets the term type
for this term id to the argument tty.
setTTY method sets the TTY field.
setTUI method sets the semantic type
unique identifier.
setTV method sets the termVariants.
setTerm method sets the Term
associated with this instance.
setTermFrequency method sets the term
frequency for the source to the argument.
setTermName method sets the term name for this
term id to the argument name.
setTermTypeList method sets the term type
list for the source to the argument.
setTerms method sets the terms for this concept.
setTerms method sets the MeSH terms to the argument
instance.
setTreeNum method sets the tree number of the
semantic relation to the argument.
setTreeNum method sets the tree number of the
semantic type to the argument.
setType method sets the string attribute type.
setType method sets the type of the identifier
for the related concept.
setType method sets the atom unique identifier
type within this concept involved in the relation.
setType method sets the type indicator for
this semantic identifier to the argument.
setTypeDesc method sets the type description for this
string type to the argument name.
setTypeDesc method sets the type description for this
term type to the argument name.
setTypeDesc method sets the type description for this
cooccurrence type to the argument name.
setTypeDesc method sets the type description for this
relation type to the argument name.
setUI method sets the
unique identifier of the type.
setUI method sets the UI of the semantic
relation to the argument.
setUI method sets the UI of the semantic type
to the argument.
setUI method sets the UI of the semantic group
to the argument.
setUI method sets the UI of the semantic identifier
to the argument.
setUN method sets the frequency meaning field.
setUsage method sets the usage note of the
semantic type to the argument.
setVCUI method sets the versioned CUI for the
SRC concept to the argument.
setVSAB method sets the versioned source
abbreviation to the argument.
setValue method sets the value
to the argument String.
setVersion method sets the version for the
source to the argument.
setXC method sets the
value of the children flag.
setXmlStringTag method sets the XML tag for
each entry in this vector to the argument.
setXmlStructure method sets the XML version
to the argument.
setXmlStructure method sets the XML version
to the argument.
setXmlTag method sets the XML tag to the argument.
setXmlTag method sets the XML tag to the argument.
suggestSpelling method returns the set of
spelling suggestions for the argument string.
TableNameVector class represents a collection of
Strings which are the raw database table names
that can be subsequently requested using two different API
methods.Vector's values.
TableNameVector's values.
Term class represents the term information for a
concept.Term instance with
empty information.
Term instance from the
Lexical unique identifier, the synonym or preferred term name,
and the language of the term.
Term instance from the
Term passed as an argument.
Term instance from the
arguments which represent the XML document.
TermAttribute class represents information about attributes
of a term including a Concept object describing the concept
to which the term applies, a Term instance with all of
its variants, and a Vector of string attributes for the term.Concept
and Term objects passed as arguments.
TermAttribute instance passed as an argument.
TermAttribute instance
from the arguments which describe the structure of the XML
document.
TermAttributeVector class represents a collection of
TermAttributes maintained within a Vector.Vector's values.
TermAttributeVector's values.
TermAttributeVector
instance from the argument string which contains the
TermAttributeVector in XML form.
TermCollection class represents a collection of
Term instances maintained within a
Vector structure.TermCollection instance from
the argument string which contains the TermCollection
in XML form.
TermId class represents the pairing of a term
identifier with a term name.TermId instance
with empty contents.
TermId instance with the
argument term unique identifier and term name; all other
attributes are set to null.
TermId instance with the
argument term unique identifier, a term name, and a description
of the source's string.
TermId instance with the
argument term unique identifier, a term name, and a description
of the source's string.
TermId instance from the
argument Element which contains the TermId
as a JDOM document ready for parsing.
TermIdVector class represents a collection of
TermId instances maintained within a
Vector structure.TermIdVector instance from
the argument string which contains the TermIdVector
in XML form.
TermType class represents the pairing of a term
identifier with a term name.TermType instance
with empty contents.
TermType instance with the
argument term unique identifier; all other attributes are set
to null.
TermType instance from the
argument Element which contains the TermType
as a JDOM document ready for parsing.
TermTypeVector class represents a collection of
TermType instances maintained within a Vector structure.TermTypeVector instance from
the argument string which contains the TermTypeVector
in XML form.
TermVector class represents a collection of Term instances
maintained within a Vector structure.Term instance from the
arguments which represent the XML document.
TermVector instance from
the argument string which contains the TermVector
in XML form.
TerminologyExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request for the terminology for a given CUI.TerminologyExecutor,
with empty contents.
TerminologyExecutor,
initializing the appropriate members.
TerminologyExecutor,
initializing the appropriate members.
TermsExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request for the term variants for given a term.TermsExecutor,
with empty contents.
TermsExecutor,
initializing the appropriate members.
TermsExecutor,
initializing the appropriate members.
TermsForLUIExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request for the terms for a given LUI.TermsForLUIExecutor,
with empty contents.
TermsForLUIExecutor,
initializing the appropriate members.
TermsForLUIExecutor,
initializing the appropriate members.
toString method performs the same function as
xmlize, returning the current Concept as its XML
representation.
toString method performs the same function as
xmlize, returning the current ConceptId as its XML
representation.
toString method performs the same function as
xmlize, returning the current StringId as its XML
representation.
toString method performs the same function as
xmlize, returning the current StringType as its XML
representation.
toString method performs the same function as
xmlize, returning the current TermId as its XML
representation.
toString method performs the same function as
xmlize, returning the current TermType as its XML
representation.
toString method performs the same function as
xmlize, returning the current CooccurrenceType as its XML
representation.
toString method performs the same function as
xmlize, returning the current RelationType as its XML
representation.
UMLSReleaseChangesExecutor will parse the XML query found
in either * a String or a char[] and interpret
that query as the request for the changes made to the UMLS for a
all releases, * a specified release or specified CUI.UMLSReleaseChangesExecutor,
with empty contents.
UMLSReleaseChangesExecutor,
initializing the appropriate members.
UMLSReleaseChangesExecutor,
initializing the appropriate members.
UMLSVersionExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request for the Current UMLS Version (year).UMLSVersionExecutor,
with emtpy contents.
UMLSVersionExecutor,
initializing the appropriate members.
UMLSVersionExecutor,
initializing the appropriate members.
UMLSVersionsExecutor will parse the XML query found in either
a String or a char[] and interpret that
query as the request for the list of UMLS Version years supported.UMLSVersionsExecutor,
with empty contents.
UMLSVersionsExecutor,
initializing the appropriate members.
UMLSVersionsExecutor,
initializing the appropriate members.
UMLSYearVector class represents a collection of
String maintained within a Vector.Vector's values.
UMLSYearVector's values.
Util class contains various static functions that
are useful for a number of KSS classes.valids method looks up all of the valid
attribute names and returns them as Strings within
a Vector.
writeContents overrides the
parent's implementation to write the concept id and the
concept name in addition to the contents of the vector.
writeContents method can be overridden
by subclasses to provide a different implementation for writing
the object to the StringBuffer.
writeContents method can be overridden
by subclasses to provide a different implementation for writing
each of the vector's entries to the StringBuffer.
writeContents method can be overridden
by subclasses to provide a different implementation for writing
each of the vector's entries to the StringBuffer.
writeContents method returns a String
containing the XML representation of this
SpellingSuggestionsVector
instance.
writeContents method is overridden
to group the lexical records into a
<lexRecords> tag.
writeContents method returns a
String containing the XML representation
for the instance.
writeContents method writes
the XML representation of this instance to the argument
StringBuffer.
writeContents overrides the parent's implementation
to write the concept id and the concept name in addition to the
contents of the vector.
writeContents method adds the XML representation
for the current instance to the argument
StringBuffer.
writeContents method adds the XML representation
for the current instance to the argument
StringBuffer.
writeContents method adds the XML
representation for the current instance to the argument
StringBuffer.
writeQuery method writes the query
string in XML form that was called to generate the XML.
writeQuery method writes the query
string in XML form that was called to generate the XML.
writeRelease method writes the query
string in XML form that was called to generate the XML.
writeRelease method writes the query
string in XML form that was called to generate the XML.
XMLException class encapsulates information about
an XML exception encountered on interpreting XML data (not XML queries).XMLInterpreter is a set of functions useful for
all classes that interpret an XML document.XmlName as its beginning and end tag.
XmlName as its beginning and end tag.
XmlName as its beginning and end tag.
XmlName as its beginning and end tag.
XmlName as its beginning and end tag.
XmlName as its beginning and end tag.
XmlName as its beginning and end tag.
XmlName as its beginning and end tag.
xmlize method.xmlVersions returns the versions of the
XML structure that this class can read.
xmlVersions returns the versions of the
XML structure that this class can read.
xmlize method returns a String containing the
XML representation of this KSObject instance.
xmlize method returns a
String containing the
XML representation of this KSObject instance.
xmlize method returns a String containing the
XML representation of this KSVector instance.
xmlize method returns a String containing the
XML representation of this KSVector instance.
xmlize method returns a String
containing a segment of an XML document.
xmlize method returns a String
containing the XML representation for this
LexicalRecord instance.
xmlize method returns a
String containing the XML representation
for this DocEntryType instance.
xmlize method returns a String containing the
XML representation of this DocEntryTypeVector instance.
xmlize method adds the XML representation
of this DocEntryVector instance to the
argument StringBuffer.
xmlize method returns a
String containing the XML representation
for this AssociatedExp instance.
xmlize method outputs this attribute in
XML form.
xmlize method generates an XML document for this
instance.
xmlize method.
xmlize method generates an XML document for
this AttributeValue instance.
xmlize method generates a String
containing the XML document for this instance.
xmlize method generates a String
containing the XML document for this instance.
xmlize method generates an XML document
for this instance.
xmlize method adds the XML representation for
the current instance to the argument StringBuffer.
xmlize method on it
xmlize method generates a String
containing the XML document for this instance.
xmlize method adds the XML representation for
the current instance to the argument StringBuffer.
xmlize method generates a String
containing the XML document from the information for a
TermAttribute passed as arguments.
xmlize method returns a String
whose contents are the XML representation for this concept instance.
xmlize method places the XML representation for this
concept instance into the argument StringBuffer.
xmlize method returns a String
whose contents are the XML representation for this concept id instance.
xmlize method places the XML representation for this
concept id instance into the argument StringBuffer.
xmlize method returns a String
containing the XML representation for this instance.
xmlize method adds the XML representation for
this Definition instance to the argument
StringBuffer.
xmlize method returns a String
containing the XML representation for the semantic type information
for this instance.
xmlize method adds the XML representation for
this SemType instance to the argument
StringBuffer.
xmlize method returns a String containing the
XML representation for this SourceInfo instance.
xmlize method adds the XML representation for
the current instance to the argument StringBuffer.
xmlize method returns a String
whose contents are the XML representation for this string id instance.
xmlize method places the XML representation for this
string id instance into the argument StringBuffer.
xmlize method returns a String
containing the XML representation for this StringInfo
instance.
xmlize method adds the XML representation for
the current instance to the argument StringBuffer.
xmlize method returns a String containing the
XML representation for this StringSource instance.
xmlize method adds the XML representation for
the current instance to the argument StringBuffer.
xmlize method returns a String
whose contents are the XML representation for this string
type instance.
xmlize method places the XML representation for this
string type instance into the argument StringBuffer.
xmlize method returns a String
containing the XML representation for this Term instance.
xmlize method adds the XML representation
for this Term instance to the argument
StringBuffer.
xmlize method returns a String
whose contents are the XML representation for this term id instance.
xmlize method places the XML representation for this
term id instance into the argument StringBuffer.
xmlize method returns a String
whose contents are the XML representation for this term type instance.
xmlize method places the XML representation for this
term id instance into the argument StringBuffer.
xmlize method returns a String
containing the XML representation for the list of Terms
maintained by the instance.
xmlize method returns a String
containing the XML representation for this instance.
xmlize method adds the XML representation
for this instance to the argument StringBuffer.
xmlize method returns a String
containing the XML representation of this CxtMember
instance.
xmlize() to output the XML form.
xmlize() to output the XML form.
xmlize method returns a String
containing the XML representation of the SourceCxt
instance.
xmlize method adds the XML representation for
the current instance to the argument StringBuffer.
xmlize method returns a String
containing the XML representation of this instance.
xmlize method adds the XML representation
for the current instance to the argument StringBuffer.
xmlize method returns a String
containing the XML representation for this COContext
instance.
xmlize method adds the XML representation for
the current instance to the argument StringBuffer.
xmlize() method
xmlize method returns a String
whose contents are the XML representation for this cooccurrence
type instance.
xmlize method places the XML representation for this
cooccurrence type instance into the argument StringBuffer.
xmlize method generates an XML document for this
CooccurringConcept instance.
xmlize method adds the XML representation
for the current instance to the argument StringBuffer.
xmlize method returns a string containing the
XML reprenstation using the argument information required to build
the co-occurrence.
xmlize method returns a string containing the
XML reprenstation using the argument information required to build
the co-occurrence.
xmlize method returns a String
containing the XML representation for this MeSH qualifier.
xmlize method places the XML for this MeSH
qualifier into the argument buffer.
String containing the
XML representation for this QualifierFrequency instance.
xmlize method adds the XML representation for
the current instance to the argument StringBuffer.
xmlize method returns a string containing the
XML representation using the argument information required to build
the qualifier frequency in XML.
xmlize method returns a String
containing the XML representation of this
QualifierFrequencyVector instance.
xmlize method adds the XML representation
of this QualifierFrequencyVector instance to the
argument StringBuffer.
xmlize method returns a
String containing the XML representation
for this ConceptDelta instance.
xmlize method adds the XML
representation for the current instance to the argument
StringBuffer.
xmlize method returns a
String containing the XML representation
using the argument information required to build the concept
changes in XML.
xmlize method returns a
String containing the XML representation
for this ReleaseDelta instance.
xmlize method adds the XML
representation for the current instance to the argument
StringBuffer.
xmlize method returns a
String containing the XML representation
using the argument information required to build the release
changes in XML.
xmlize method adds the XML representation
of this ReleaseDeltaVector instance to the
argument StringBuffer.
xmlize method returns a String
containing the XML representation for this Locator
instance.
xmlize method adds the XML representation for
the current instance to the argument StringBuffer.
xmlize method returns a String
containing the XML reprenstation using the argument information
required to build the locator.
xmlize method returns a String containing
the XML representation for this MeSHEntry instance.
xmlize method adds the XML representation
for the current instance to the argument StringBuffer.
xmlize method returns a string containing
the XML reprenstation using the argument information required
to build the relation.
xmlize method returns a String containing
the XML representation for this MeSHInfo instance.
xmlize method adds the XML representation
for the current instance to the argument StringBuffer.
xmlize method returns a string containing
the XML reprenstation using the argument information required
to build the relation.
xmlize method returns a String
containing the XML representation for this RelSource
instance.
xmlize method returns a String
containing the XML representation for this Relation
instance.
xmlize method adds the XML representation
for the current instance to the argument StringBuffer.
xmlize method returns a String
whose contents are the XML representation for this relation
type instance.
xmlize method places the XML representation for this
relation type instance into the argument StringBuffer.
String containing the instance
as an XML document segment.
xmlize() that returns a String
and then place that in a StringBuffer
xmlize method returns a String
containing the XML representation for this
AssociativeRelation instance.
AssociativeRelationVector and call its
xmlize method
xmlize method returns a String
containing the XML representation for this
HierSemanticRelation instance.
xmlize method adds the XML representation
for the current instance to the argument StringBuffer.
xmlize method adds the XML representation
for the current instance to the argument StringBuffer.
HierSemanticRelationVector and
then call its xmlize method.
xmlize method returns a String
containing the XML representation for this HierSemanticType
instance.
xmlize method adds the XML representation
for the current instance to the argument StringBuffer.
xmlize method adds the XML representation
for the current instance to the argument StringBuffer.
HierSemanticTypeVector
and then call its xmlize method
xmlize method returns a String
containing the XML representation for this SemGroup
instance.
xmlize method adds the XML representation
for the current instance to the argument StringBuffer.
SemGroupVector
and then call its xmlize method
xmlize method returns a String
containing the XML representation for this SemNetId
instance.
xmlize method adds the XML representation
for the current instance to the argument StringBuffer.
SemNetIdVector
and then call its xmlize method
CxtMember elements to the argument
StringBuffer using the start and
stop as the surrounding XML element tags.
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