BLASTX+BEAUTY Search Results

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BLASTX+BEAUTY Search Results

WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.
BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.
BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract
Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract


RepeatMasker repeats found in sequence:
No Repeats Found.

Reference:  Gish, Warren (1994-1997).  unpublished.
Gish, Warren and David J. States (1993).  Identification of protein coding
regions by database similarity search.  Nat. Genet. 3:266-72.

Notice:  statistical significance is estimated under the assumption that the
equivalent of one entire reading frame in the query sequence codes for protein
and that significant alignments will involve only coding reading frames.

Query=  C01A10_CONSENSUS
        (625 letters)
  Translating both strands of query sequence in all 6 reading frames

Database:  nr
           625,274 sequences; 197,782,623 total letters.


     Observed Numbers of Database Sequences Satisfying
    Various EXPECTation Thresholds (E parameter values)

        Histogram units:      = 3 Sequences     : less than 3 sequences

 EXPECTation Threshold
 (E parameter)
    |
    V   Observed Counts-->
  10000 848 146 |================================================
   6310 702 135 |=============================================
   3980 567  99 |=================================
   2510 468  93 |===============================
   1580 375 113 |=====================================
   1000 262  70 |=======================
    631 192  81 |===========================
    398 111  29 |=========
    251  82  11 |===
    158  71   8 |==
    100  63   9 |===
   63.1  54   2 |:
   39.8  52   3 |=
   25.1  49   1 |:
   15.8  48   3 |=
 >>>>>>>>>>>>>>>>>>>>>  Expect = 10.0, Observed = 45  <<<<<<<<<<<<<<<<<
   10.0  45   2 |:
   6.31  43   0 |
   3.98  43   0 |
   2.51  43   0 |
   1.58  43   0 |
   1.00  43   1 |:
   0.63  42   0 |
   0.40  42   1 |:
   0.25  41   0 |
   0.16  41   1 |:
   0.10  40   1 |:
  0.063  39   0 |
  0.040  39   0 |
  0.025  39   0 |
  0.016  39   0 |
  0.010  39   0 |
 0.0063  39   0 |
 0.0040  39   0 |
 0.0025  39   1 |:


                                                                     Smallest
                                                                       Sum
                                                     Reading  High  Probability
Sequences producing High-scoring Segment Pairs:        Frame Score  P(N)      N
gi|5762260|dbj|BAA83471.1|(AB008848) Csf-3 [Cucumis s... -3   421  1.8e-38   1
gi|548770|sp|P35684|RL3_ORYSA60S RIBOSOMAL PROTEIN L3... -3   412  1.6e-37   1
gi|3122718|sp|O16797|RL3_DROME60S RIBOSOMAL PROTEIN L... -3   325  5.7e-35   2
gi|7299419|gb|AAF54609.1|(AE003690) RpL3 gene product... -3   325  5.7e-35   2
gi|2982305|gb|AAC32138.1|(AF051237) 60S ribosomal pro... -3   386  9.3e-35   1
gi|6688812|emb|CAB65281.1|(AJ248327) L3 Ribosomal pro... -3   358  1.9e-34   2
gi|1710557|sp|P50880|RL3_CAEEL60S RIBOSOMAL PROTEIN L... -3   303  2.1e-33   2
gi|132944|sp|P22738|RL3B_ARATH60S RIBOSOMAL PROTEIN L... -3   370  4.6e-33   1
gi|4585874|gb|AAD25547.1|AC005850_4(AC005850) 60s rib... -3   370  4.6e-33   1
gi|3617741|gb|AAC36018.1|(AC005687) L3 cytoplasmic ri... -3   366  1.2e-32   1
gi|1197059|gb|AAA88732.1|(J01351) ribosomal protein L... -3   293  2.1e-31   2
gi|6324637ref|NP_014706.1| Ribosomal protein L3 (rp1)... -3   293  2.1e-31   2
gi|81657|pir||JQ0771ribosomal protein L3.e (clone ARP... -3   352  3.7e-31   1
gi|6174955|sp|P17094|RL3A_ARATH60S RIBOSOMAL PROTEIN L3  -3   352  3.7e-31   1
gi|4826988ref|NP_005052.1| ribosomal protein L3-like ... -3   299  1.8e-30   2
gi|12739510ref|XP_007920.2| ribosomal protein L3-like... -3   299  1.8e-30   2
gi|3861468|emb|CAA10068.1|(AJ012585) ribosomal protei... -3   335  2.4e-29   1
gi|548771|sp|P36584|RL3B_SCHPO60S RIBOSOMAL PROTEIN L... -3   272  2.3e-28   2
gi|730556|sp|P40372|RL3A_SCHPO60S RIBOSOMAL PROTEIN L... -3   272  2.3e-28   2
gi|6537320|gb|AAF15600.1|AF198447_1(AF198447) 60S rib... -3   264  1.0e-27   2
gi|1350745|sp|P49149|RL3_TOXCA60S RIBOSOMAL PROTEIN L... -3   314  4.0e-27   1
gi|7159574|emb|CAB76199.1|(AJ238851) ribosomal protei... -3   307  2.2e-26   1
gi|132958|sp|P21531|RL3_RAT60S RIBOSOMAL PROTEIN L3 (... -3   303  5.8e-26   1
gi|730564|sp|P39872|RL3_BOVIN60S RIBOSOMAL PROTEIN L3... -3   303  5.8e-26   1
gi|7305441ref|NP_038790.1| ribosomal protein L3 [Mus ... -3   302  7.4e-26   1
gi|4506649ref|NP_000958.1| ribosomal protein L3 [Homo... -3   302  7.4e-26   1
gi|2119106|pir||I84501ribosomal protein L3 - human (f... -3   302  7.4e-26   1
gi|7159730|emb|CAB76201.1|(AJ238852) ribosomal protei... -3   302  7.4e-26   1
gi|464637|sp|P34113|RL3_DICDI60S RIBOSOMAL PROTEIN L3... -3   292  8.5e-25   1
gi|7417236|gb|AAF62506.1|(AF225211) ribosomal protein... -3   274  9.1e-23   1
gi|3088345|dbj|BAA25828.1|(AB007166) ribosomal protei... -3   242  1.7e-19   1
gi|6049122|gb|AAF02464.1|AF127447_1(AF127447) 60S rib... -3   155  2.8e-10   1
gi|9910846|sp|Q9V1T5|RL3_PYRAB50S RIBOSOMAL PROTEIN L... -3   127  1.7e-07   2
gi|6094075|sp|O59418|RL3_PYRHO50S RIBOSOMAL PROTEIN L... -3   126  2.5e-07   2
gi|1710558|sp|P54014|RL3_METJA50S RIBOSOMAL PROTEIN L... -3   137  1.8e-06   1
gi|11499509ref|NP_070750.1| LSU ribosomal protein L3P... -3   120  0.00030   1
gi|3122720|sp|O26110|RL3_METTH50S RIBOSOMAL PROTEIN L... -3   120  0.00031   1
gi|9910844|sp|Q9UWG2|RL3_METVA50S RIBOSOMAL PROTEIN L3P  -3   118  0.00054   1
gi|10640617|emb|CAC12395.1|(AL445067) 50S ribosomal p... -3   113  0.0021    1
gi|9910845|sp|Q9UXA8|RL3_SULSO50S RIBOSOMAL PROTEIN L... -3   100  0.080     1
gi|10581159|gb|AAG19936.1|(AE005077) 50S ribosomal pr... -3    98  0.12      1
gi|6685859|sp|Q9YFM2|RL3_AERPE50S RIBOSOMAL PROTEIN L... -3    95  0.27      1
gi|548769|sp|Q06844|RL3_HALHA50S RIBOSOMAL PROTEIN L3... -3    92  0.48      1
gi|132955|sp|P20279|RL3_HALMA50S RIBOSOMAL PROTEIN L3... -3    82  0.99993   1
gi|10120921|pdb|1FFK|BChain B, Crystal Structure Of T... -3    82  0.99993   1



Locally-aligned regions (HSPs) with respect to query sequence:

Locus_ID                Frame -2 Hits
gi|5762260             |                                   ____________   
gi|548770              |                                   ____________   
gi|3122718             |                                   ____________   
gi|7299419             |                                   ____________   
gi|6688812             |                  ____             ____________   
gi|1710557             |                                   ____________   
gi|132944              |                                   ____________   
gi|4585874             |                                   ____________   
gi|3617741             |                                   ____________   
gi|1197059             |                                    ___________   
gi|6324637             |                                    ___________   
gi|81657               |                                   ____________   
gi|6174955             |                                   ____________   
gi|4826988             |                                   ____________   
gi|12739510            |                                   ____________   
gi|548771              |                                    ___________   
gi|730556              |                                    ___________   
gi|6537320             |                                    ___________   
gi|1350745             |                                   ____________   
gi|9910846             |                                   ____________   
gi|6094075             |                                   ____________   
Prosite Hits:                              ______                         
                        __________________________________________________
Query sequence:        |           |           |           |           |  | 209
                       0          50         100         150         200
__________________
Prosite hits:
   LEUCINE_ZIPPER       Leucine zipper pattern.                  84..105
__________________


Locus_ID                Frame -3 Hits
gi|5762260             |                                                  
gi|548770              |                                                  
gi|3122718             |                                                  
gi|7299419             |                                                  
gi|2982305             |                                                  
gi|6688812             |                                                  
gi|1710557             |                                                  
gi|132944              |                                                  
gi|4585874             |                                                  
gi|3617741             |                                                  
gi|1197059             |                                                  
gi|6324637             |                                                  
gi|81657               |                                                  
gi|6174955             |                                                  
gi|4826988             |                                                  
gi|12739510            |                                                  
gi|3861468             |                                                  
gi|548771              |                                                  
gi|730556              |                                                  
gi|6537320             |                                                  
gi|1350745             |                                                  
gi|7159574             |                                                  
gi|132958              |                                                  
gi|730564              |                                                  
gi|7305441             |                                                  
gi|4506649             |                                                  
gi|2119106             |                                                  
gi|7159730             |                                                  
gi|464637              |                                                  
gi|7417236             |                                                  
gi|3088345             |                                                  
gi|6049122             |                  _________                       
gi|9910846             |                       _______________            
gi|6094075             |                       _______________            
gi|1710558             |                                                  
gi|11499509            |                                                  
gi|3122720             |                                                  
gi|9910844             |                                                  
gi|10640617            |                      _______________             
gi|9910845             |                                                  
gi|10581159            |                      _                           
gi|6685859             |                                                  
gi|548769              |                      _                           
gi|132955              |                                                  
gi|10120921            |                                                  
                        __________________________________________________
Query sequence:        |           |           |           |           |  | 209
                       0          50         100         150         200


Use the  and  icons to retrieve links to Entrez:
E = Retrieve Entrez links (e.g., Medline abstracts, FASTA-formatted sequence reports).
R = Retrieve links to Related sequences (neighbors).

Use the  icon (if present) to retrieve links to the Sequence Retrieval System (SRS).

Use the  icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .

Use the  icon (if present) to retrieve links to the Protein Data Bank database.


 >gi|5762260|dbj|BAA83471.1|  (AB008848) Csf-3 [Cucumis sativus]
            Length = 219

Frame -2 hits (HSPs):                          ___________                
Frame -3 hits (HSPs):                       ______________________________
                        __________________________________________________
Database sequence:     |           |          |           |          |    | 219
                       0          50        100         150        200

  Minus Strand HSPs:

 Score = 421 (148.2 bits), Expect = 1.8e-38, P = 1.8e-38
 Identities = 88/130 (67%), Positives = 101/130 (77%), Frame = -3

Query:   620 RVSFNCCQ-GWSGMDTTTELELNKKVXQAWQSWERNLTLXXRSLIGPRKTLTPMGGFPHY 444
             RVSF   + G +G    TE+  NKKV +  ++ + + T          K +TPMGGFPHY
Sbjct:    92 RVSFTVARAGQNGYHHRTEM--NKKVYKIGKTGQESHTAITE-FDRTEKDITPMGGFPHY 148

Query:   443 GVVKDDFIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQTTQ 264
             G+VK D++M+KG CVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQTTQ
Sbjct:   149 GIVKSDYLMIKGGCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQTTQ 208

Query:   263 EKQKFFGRLKA 231
             EKQKFFGRLKA
Sbjct:   209 EKQKFFGRLKA 219

 Score = 143 (50.3 bits), Expect = 4.7e-08, P = 4.7e-08
 Identities = 26/46 (56%), Positives = 34/46 (73%), Frame = -2

Query:   588 RNGYHHRTGVEQEGXTSLAKLGEESHSXLTEFDRTEKDINPNGWFP 451
             +NGYHHRT + ++    + K G+ESH+ +TEFDRTEKDI P G FP
Sbjct:   102 QNGYHHRTEMNKK-VYKIGKTGQESHTAITEFDRTEKDITPMGGFP 146


 >gi|548770|sp|P35684|RL3_ORYSA  60S RIBOSOMAL PROTEIN L3 >gi|481228|pir||S38359
            ribosomal protein L3.e, cytosolic - rice >gi|303853|dbj|BAA02155.1|
            (D12630) ribosomal protein L3 [Oryza sativa]
            Length = 389

Frame -2 hits (HSPs):                                     _______         
Frame -3 hits (HSPs):                                    _________________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                   |                  |           | 389
                       0                 150                300
__________________

Annotated Domains:
   DOMO                 DM00797: RIBOSOMALPROTEINL3              1..115
   DOMO                 DM00364: RIBOSOMALPROTEINL3              117..342
   PFAM                 Ribosomal_L3: Ribosomal protein L3       49..342
   PRODOM               PD003396: RL3(16) RL3A(2) RL3B(2)        4..188
   PRODOM               PD001374: RL3(36) RK3(4) RM03(3)         200..286
   PRODOM               PD004346: RL3(11) RL3A(2) RL3B(2)        305..366
   PRODOM               PD105233: RL3_ORYSA                      368..387
   PROSITE              RIBOSOMAL_L3: Ribosomal protein L3 signa 212..235
__________________


  Minus Strand HSPs:

 Score = 412 (145.0 bits), Expect = 1.6e-37, P = 1.6e-37
 Identities = 84/130 (64%), Positives = 100/130 (76%), Frame = -3

Query:   620 RVSFNCCQ-GWSGMDTTTELELNKKVXQAWQSWERNLTLXXRSLIGPRKTLTPMGGFPHY 444
             RVS+   + G +G    TE+  NKKV +  +S + +            K +TPMGGFPHY
Sbjct:   262 RVSYTVARAGQNGYHHRTEM--NKKVYKIGKSGQESHAACTE-FDRTEKDITPMGGFPHY 318

Query:   443 GVVKDDFIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQTTQ 264
             GVVK D++M+KGCCVGPKKRV+TLRQSLLKQTSR+ALEEIKLKFIDTSSKFGHGRFQTT 
Sbjct:   319 GVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTD 378

Query:   263 EKQKFFGRLKA 231
             EKQ+FFG+LKA
Sbjct:   379 EKQRFFGKLKA 389

 Score = 139 (48.9 bits), Expect = 1.4e-06, P = 1.4e-06
 Identities = 26/46 (56%), Positives = 33/46 (71%), Frame = -2

Query:   588 RNGYHHRTGVEQEGXTSLAKLGEESHSXLTEFDRTEKDINPNGWFP 451
             +NGYHHRT + ++    + K G+ESH+  TEFDRTEKDI P G FP
Sbjct:   272 QNGYHHRTEMNKK-VYKIGKSGQESHAACTEFDRTEKDITPMGGFP 316


 >gi|3122718|sp|O16797|RL3_DROME  60S RIBOSOMAL PROTEIN L3
            >gi|2384754|gb|AAC26144.1| (AF016835) ribosomal protein L3
            [Drosophila melanogaster]
            Length = 416

Frame -2 hits (HSPs):                                   _______           
Frame -3 hits (HSPs):                                        ___________  
Annotated Domains:      ________________________________________________  
                        __________________________________________________
Database sequence:     |                 |                 |              | 416
                       0               150               300
__________________

Annotated Domains:
   PFAM                 Ribosomal_L3: Ribosomal protein L3       49..347
   PRODOM               PD003396: RL3(16) RL3A(2) RL3B(2)        4..189
   PRODOM               PD001374: RL3(36) RK3(4) RM03(3)         202..285
   PRODOM               PD105238: RL3_DROME                      287..309
   PRODOM               PD004346: RL3(11) RL3A(2) RL3B(2)        311..371
   PRODOM               PD105241: RL3_DROME                      373..398
   PROSITE              RIBOSOMAL_L3: Ribosomal protein L3 signa 211..234
__________________


  Minus Strand HSPs:

 Score = 325 (114.4 bits), Expect = 5.7e-35, Sum P(2) = 5.7e-35
 Identities = 59/82 (71%), Positives = 69/82 (84%), Frame = -3

Query:   479 KTLTPMGGFPHYGVVKDDFIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTS 300
             K++TPMGGFPHYG V +DF+M+KGCC+G KKR+ITLR+SLLK T R ALE+IKLKFIDTS
Sbjct:   312 KSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTS 371

Query:   299 SKFGHGRFQTTQEKQKFFGRLK 234
             SK GHGRFQT  +K  F G LK
Sbjct:   372 SKMGHGRFQTPADKLAFMGPLK 393

 Score = 79 (27.8 bits), Expect = 5.7e-35, Sum P(2) = 5.7e-35
 Identities = 19/51 (37%), Positives = 28/51 (54%), Frame = -2

Query:   588 RNGYHHRTGVEQE----GXTSLAKLGEE-SHSXLTEFDRTEKDINPNGWFP 451
             + GYHHRT + ++    G     K G+   ++  TE+D T+K I P G FP
Sbjct:   271 QKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFP 321


 >gi|7299419|gb|AAF54609.1|  (AE003690) RpL3 gene product [alt 1] [Drosophila
            melanogaster] >gi|7299420|gb|AAF54610.1| (AE003690) RpL3 gene
            product [alt 4] [Drosophila melanogaster]
            Length = 403

Frame -2 hits (HSPs):                                  ________           
Frame -3 hits (HSPs):                                       ____________  
                        __________________________________________________
Database sequence:     |                  |                  |            | 403
                       0                150                300

  Minus Strand HSPs:

 Score = 325 (114.4 bits), Expect = 5.7e-35, Sum P(2) = 5.7e-35
 Identities = 59/82 (71%), Positives = 69/82 (84%), Frame = -3

Query:   479 KTLTPMGGFPHYGVVKDDFIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTS 300
             K++TPMGGFPHYG V +DF+M+KGCC+G KKR+ITLR+SLLK T R ALE+IKLKFIDTS
Sbjct:   299 KSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTS 358

Query:   299 SKFGHGRFQTTQEKQKFFGRLK 234
             SK GHGRFQT  +K  F G LK
Sbjct:   359 SKMGHGRFQTPADKLAFMGPLK 380

 Score = 79 (27.8 bits), Expect = 5.7e-35, Sum P(2) = 5.7e-35
 Identities = 19/51 (37%), Positives = 28/51 (54%), Frame = -2

Query:   588 RNGYHHRTGVEQE----GXTSLAKLGEE-SHSXLTEFDRTEKDINPNGWFP 451
             + GYHHRT + ++    G     K G+   ++  TE+D T+K I P G FP
Sbjct:   258 QKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFP 308


 >gi|2982305|gb|AAC32138.1|  (AF051237) 60S ribosomal protein L3 [Picea mariana]
            Length = 86

Frame -3 hits (HSPs):    _________________________________________________
                        __________________________________________________
Database sequence:     |           |          |           |          |    | 86
                       0          20         40          60         80

  Minus Strand HSPs:

 Score = 386 (135.9 bits), Expect = 9.3e-35, P = 9.3e-35
 Identities = 71/83 (85%), Positives = 78/83 (93%), Frame = -3

Query:   479 KTLTPMGGFPHYGVVKDDFIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTS 300
             K +TPMGGFPHYGV+KDD+IM++GCCVG KKRV+TLRQSLLKQTSR ALEEIKLKFIDTS
Sbjct:     4 KDITPMGGFPHYGVLKDDYIMIRGCCVGTKKRVVTLRQSLLKQTSRTALEEIKLKFIDTS 63

Query:   299 SKFGHGRFQTTQEKQKFFGRLKA 231
             SKFGHGRFQTTQEK K FG+LKA
Sbjct:    64 SKFGHGRFQTTQEKAKIFGKLKA 86


 >gi|6688812|emb|CAB65281.1|  (AJ248327) L3 Ribosomal protein [Medicago sativa
            subsp. x varia]
            Length = 388

Frame -2 hits (HSPs):                                     _______       __
Frame -3 hits (HSPs):                                    _________________
                        __________________________________________________
Database sequence:     |                   |                  |           | 388
                       0                 150                300

  Minus Strand HSPs:

 Score = 358 (126.0 bits), Expect = 1.9e-34, Sum P(2) = 1.9e-34
 Identities = 76/125 (60%), Positives = 89/125 (71%), Frame = -3

Query:   620 RVSFNCCQ-GWSGMDTTTELELNKKVXQAWQSWERNLTLXXRSLIGPRKTLTPMGGFPHY 444
             RVSF   + G +G    TEL  NKK+ +  +  E              K +TPMGGFPHY
Sbjct:   262 RVSFTVARAGQNGYHHRTEL--NKKIYKLGKVGEETHDAQTE-FDRTEKDITPMGGFPHY 318

Query:   443 GVVKDDFIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQTTQ 264
             G+VK+DF+M+KG CVGPKKRVITLRQSLLKQTSR+ALE+IKLKFIDTS KFGHGRFQTT 
Sbjct:   319 GIVKEDFLMIKGGCVGPKKRVITLRQSLLKQTSRLALEDIKLKFIDTSFKFGHGRFQTTS 378

Query:   263 EKQKFF 246
             E Q  +
Sbjct:   379 ENQSLW 384

 Score = 142 (50.0 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
 Identities = 27/46 (58%), Positives = 33/46 (71%), Frame = -2

Query:   588 RNGYHHRTGVEQEGXTSLAKLGEESHSXLTEFDRTEKDINPNGWFP 451
             +NGYHHRT + ++    L K+GEE+H   TEFDRTEKDI P G FP
Sbjct:   272 QNGYHHRTELNKK-IYKLGKVGEETHDAQTEFDRTEKDITPMGGFP 316

 Score = 41 (14.4 bits), Expect = 1.9e-34, Sum P(2) = 1.9e-34
 Identities = 7/12 (58%), Positives = 9/12 (75%), Frame = -2

Query:   267 TGEAEVLWTPQS 232
             T E + LWTPQ+
Sbjct:   377 TSENQSLWTPQA 388


 >gi|1710557|sp|P50880|RL3_CAEEL  60S RIBOSOMAL PROTEIN L3
            >gi|7498976|pir||T19771 hypothetical protein F13B10.2 -
            Caenorhabditis elegans >gi|1181129|emb|CAA93269.1| (Z69337)
            ribosomal protein L3 [Caenorhabditis elegans]
            >gi|1181131|emb|CAA93268.1| (Z69336) ribosomal protein L3
            [Caenorhabditis elegans] >gi|3874745|emb|CAA91277.1| (Z66495)
            contains similarity to Pfam domain: PF00297 (Ribosomal protein L3),
            Score=576.5, E-value=5.5e-170, N=1~cDNA EST EMBL:M75754 comes from
            this gene; cDNA EST EMBL:M88798 comes from this gene~cDNA EST
            EMBL:M88842 comes from this gene; cDNA EST EMB>
            >gi|3875827|emb|CAA90183.1| (Z49936) contains similarity to Pfam
            domain: PF00297 (Ribosomal protein L3), Score=576.5,
            E-value=5.5e-170, N=1~cDNA EST EMBL:M75754 comes from this gene;
            cDNA EST EMBL:M88798 comes from this gene~cDNA EST EMBL:M88842
            comes from this gene; cDNA EST EMB>
            Length = 401

Frame -2 hits (HSPs):                                    _______          
Frame -3 hits (HSPs):                                         ___________ 
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                  |                  |            | 401
                       0                150                300
__________________

Annotated Domains:
   DOMO                 DM00797: RIBOSOMALPROTEINL3              2..116
   DOMO                 DM00364: RIBOSOMALPROTEINL3              118..345
   DOMO                 DM01452: RIBOSOMALPROTEINL3              347..400
   PFAM                 Ribosomal_L3: Ribosomal protein L3       50..345
   PRODOM               PD003396: RL3(16) RL3A(2) RL3B(2)        5..190
   PRODOM               PD001374: RL3(36) RK3(4) RM03(3)         203..286
   PRODOM               PD004346: RL3(11) RL3A(2) RL3B(2)        309..369
   PRODOM               PD036322: RL3(2)                         372..398
   PROSITE              RIBOSOMAL_L3: Ribosomal protein L3 signa 211..234
__________________


  Minus Strand HSPs:

 Score = 303 (106.7 bits), Expect = 2.1e-33, Sum P(2) = 2.1e-33
 Identities = 56/83 (67%), Positives = 70/83 (84%), Frame = -3

Query:   482 RKTLTPMGGFPHYGVVKDDFIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDT 303
             +KT+TPMGGFP YG+V  D+IM++G  +GPKKR+ITLR+SL+ QT RVA E+I LK+IDT
Sbjct:   308 QKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDT 367

Query:   302 SSKFGHGRFQTTQEKQKFFGRLK 234
             SSK GHGRFQTT EK+ F G+LK
Sbjct:   368 SSKTGHGRFQTTAEKRAFMGKLK 390

 Score = 86 (30.3 bits), Expect = 2.1e-33, Sum P(2) = 2.1e-33
 Identities = 20/48 (41%), Positives = 30/48 (62%), Frame = -2

Query:   588 RNGYHHRTGVEQE----GXTSLAKLGEESHSXLTEFDRTEKDINPNGWFP 451
             + G+HHRT +  +    G ++L + G+ + S  TEFD T+K I P G FP
Sbjct:   271 QKGFHHRTIINNKIYRIGKSALTEEGKNNGS--TEFDLTQKTITPMGGFP 318


 >gi|132944|sp|P22738|RL3B_ARATH  60S RIBOSOMAL PROTEIN L3 >gi|81658|pir||JQ0772
            ribosomal protein L3.e (clone ARP2), cytosolic - Arabidopsis
            thaliana >gi|806279|gb|AAA66161.1| (M32655) ribosomal protein
            [Arabidopsis thaliana]
            Length = 390

Frame -2 hits (HSPs):                                     _______         
Frame -3 hits (HSPs):                                    _________________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                   |                  |           | 390
                       0                 150                300
__________________

Annotated Domains:
   BLOCKS               BL00474A: Ribosomal protein L3 proteins. 45..55
   BLOCKS               BL00474B: Ribosomal protein L3 proteins. 79..108
   BLOCKS               BL00474C: Ribosomal protein L3 proteins. 211..245
   BLOCKS               BL00474D: Ribosomal protein L3 proteins. 252..288
   DOMO                 DM00797: RIBOSOMALPROTEINL3              1..115
   DOMO                 DM00364: RIBOSOMALPROTEINL3              117..342
   PFAM                 Ribosomal_L3: Ribosomal protein L3       49..342
   PRODOM               PD003396: RL3(16) RL3A(2) RL3B(2)        4..186
   PRODOM               PD001374: RL3(36) RK3(4) RM03(3)         203..286
   PRODOM               PD004346: RL3(11) RL3A(2) RL3B(2)        305..365
   PRODOM               PD105236: RL3B_ARATH                     367..388
   PROSITE              RIBOSOMAL_L3: Ribosomal protein L3 signa 212..235
__________________


  Minus Strand HSPs:

 Score = 370 (130.2 bits), Expect = 4.6e-33, P = 4.6e-33
 Identities = 78/130 (60%), Positives = 99/130 (76%), Frame = -3

Query:   620 RVSFNCCQ-GWSGMDTTTELELNKKVXQAW---QSWERNLTLXXRSLIGPRKTLTPMGGF 453
             RVS+   + G +G    TE+  NKKV +     Q     +T   R+     K +TPMGGF
Sbjct:   262 RVSYTVARAGQNGYHHRTEM--NKKVYRVGKVGQETHSAMTEYDRT----EKDITPMGGF 315

Query:   452 PHYGVVKDDFIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQ 273
             PHYG+VK+D++M+KGCCVGPKKRV+TLRQ+LLKQTSR+A+EEIKLKFID +S  GHGRFQ
Sbjct:   316 PHYGIVKEDYLMIKGCCVGPKKRVVTLRQTLLKQTSRLAMEEIKLKFIDAASNGGHGRFQ 375

Query:   272 TTQEKQKFFGR-LKA 231
             T+QEK KF+GR +KA
Sbjct:   376 TSQEKAKFYGRTIKA 390

 Score = 140 (49.3 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 25/46 (54%), Positives = 35/46 (76%), Frame = -2

Query:   588 RNGYHHRTGVEQEGXTSLAKLGEESHSXLTEFDRTEKDINPNGWFP 451
             +NGYHHRT + ++    + K+G+E+HS +TE+DRTEKDI P G FP
Sbjct:   272 QNGYHHRTEMNKK-VYRVGKVGQETHSAMTEYDRTEKDITPMGGFP 316


 >gi|4585874|gb|AAD25547.1|AC005850_4  (AC005850) 60s ribosomal protein L3
            [Arabidopsis thaliana]
            Length = 390

Frame -2 hits (HSPs):                                     _______         
Frame -3 hits (HSPs):                                    _________________
                        __________________________________________________
Database sequence:     |                   |                  |           | 390
                       0                 150                300

  Minus Strand HSPs:

 Score = 370 (130.2 bits), Expect = 4.6e-33, P = 4.6e-33
 Identities = 78/130 (60%), Positives = 99/130 (76%), Frame = -3

Query:   620 RVSFNCCQ-GWSGMDTTTELELNKKVXQAW---QSWERNLTLXXRSLIGPRKTLTPMGGF 453
             RVS+   + G +G    TE+  NKKV +     Q     +T   R+     K +TPMGGF
Sbjct:   262 RVSYTVARAGQNGYHHRTEM--NKKVYRVGKVGQETHSAMTEYDRT----EKDITPMGGF 315

Query:   452 PHYGVVKDDFIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQ 273
             PHYG+VK+D++M+KGCCVGPKKRV+TLRQ+LLKQTSR+A+EEIKLKFID +S  GHGRFQ
Sbjct:   316 PHYGIVKEDYLMIKGCCVGPKKRVVTLRQTLLKQTSRLAMEEIKLKFIDAASNGGHGRFQ 375

Query:   272 TTQEKQKFFGR-LKA 231
             T+QEK KF+GR +KA
Sbjct:   376 TSQEKAKFYGRTIKA 390

 Score = 140 (49.3 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 25/46 (54%), Positives = 35/46 (76%), Frame = -2

Query:   588 RNGYHHRTGVEQEGXTSLAKLGEESHSXLTEFDRTEKDINPNGWFP 451
             +NGYHHRT + ++    + K+G+E+HS +TE+DRTEKDI P G FP
Sbjct:   272 QNGYHHRTEMNKK-VYRVGKVGQETHSAMTEYDRTEKDITPMGGFP 316


 >gi|3617741|gb|AAC36018.1|  (AC005687) L3 cytoplasmic ribosomal protein
            [Arabidopsis thaliana] >gi|11935191|gb|AAG42011.1|AF327421_1
            (AF327421) putative L3 cytoplasmic ribosomal protein [Arabidopsis
            thaliana]
            Length = 389

Frame -2 hits (HSPs):                                     _______         
Frame -3 hits (HSPs):                                    _________________
                        __________________________________________________
Database sequence:     |                   |                  |           | 389
                       0                 150                300

  Minus Strand HSPs:

 Score = 366 (128.8 bits), Expect = 1.2e-32, P = 1.2e-32
 Identities = 75/128 (58%), Positives = 95/128 (74%), Frame = -3

Query:   620 RVSFNCCQ-GWSGMDTTTELELNKKVXQAWQ-SWERNLTLXXRSLIGPRKTLTPMGGFPH 447
             RVS+   + G +G    TEL  NKK+ +  +   E +  +         K +TPMGGFPH
Sbjct:   262 RVSYTVARAGQNGYHHRTEL--NKKIYRLGKVGTEAHTAMTEYDRT--EKDVTPMGGFPH 317

Query:   446 YGVVKDDFIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQTT 267
             YG+VKDD++M+KGCCVGPKKRV+TLRQSLL QTSR+ALEEIKLKFIDT+S FGHGRFQT+
Sbjct:   318 YGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTS 377

Query:   266 QEKQKFFGRL 237
              EK +F+ R+
Sbjct:   378 LEKMRFYNRV 387

 Score = 136 (47.9 bits), Expect = 3.7e-06, P = 3.7e-06
 Identities = 24/46 (52%), Positives = 34/46 (73%), Frame = -2

Query:   588 RNGYHHRTGVEQEGXTSLAKLGEESHSXLTEFDRTEKDINPNGWFP 451
             +NGYHHRT + ++    L K+G E+H+ +TE+DRTEKD+ P G FP
Sbjct:   272 QNGYHHRTELNKK-IYRLGKVGTEAHTAMTEYDRTEKDVTPMGGFP 316


 >gi|1197059|gb|AAA88732.1|  (J01351) ribosomal protein L3 [Saccharomyces
            cerevisiae]
            Length = 387

Frame -2 hits (HSPs):                                     _______         
Frame -3 hits (HSPs):                                         ____________
                        __________________________________________________
Database sequence:     |                   |                  |           | 387
                       0                 150                300

  Minus Strand HSPs:

 Score = 293 (103.1 bits), Expect = 2.1e-31, Sum P(2) = 2.1e-31
 Identities = 55/83 (66%), Positives = 66/83 (79%), Frame = -3

Query:   482 RKTLTPMGGFPHYGVVKDDFIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDT 303
             +KT+TPMGGF HYG +K+DFIMVKGC  G +KR++TLR+SL   TSR ALEE+ LK+IDT
Sbjct:   302 KKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRKSLYTNTSRKALEEVSLKWIDT 361

Query:   302 SSKFGHGRFQTTQEKQKFFGRLK 234
             +SKFG GRFQT  EK  F G LK
Sbjct:   362 ASKFGKGRFQTPAEKHAFMGTLK 384

 Score = 77 (27.1 bits), Expect = 2.1e-31, Sum P(2) = 2.1e-31
 Identities = 17/45 (37%), Positives = 25/45 (55%), Frame = -2

Query:   588 RNGYHHRTGVEQEGXTSLAKLGEESHSXLTEFDRTEKDINPNGWF 454
             + GYH RT +  +    + K G++  +  T FDRT+K I P G F
Sbjct:   269 QRGYHSRTSINHK-IYRVGK-GDDEANGATSFDRTKKTITPMGGF 311


 >gi|6324637  ref|NP_014706.1| Ribosomal protein L3 (rp1) (YL1); Rpl3p
            [Saccharomyces cerevisiae] >gi|2507307|sp|P14126|RL3_YEAST 60S
            RIBOSOMAL PROTEIN L3 (YL1) (RP1) (TRICHODERMIN RESISTANCE PROTEIN)
            >gi|2144768|pir||R5BY4E ribosomal protein L3.e, cytosolic - yeast
            (Saccharomyces cerevisiae) >gi|1420207|emb|CAA99256.1| (Z74971) ORF
            YOR063w [Saccharomyces cerevisiae] >gi|2104875|emb|CAA94548.1|
            (Z70678) YOR29-14 [Saccharomyces cerevisiae]
            Length = 387

Frame -2 hits (HSPs):                                     _______         
Frame -3 hits (HSPs):                                         ____________
                        __________________________________________________
Database sequence:     |                   |                  |           | 387
                       0                 150                300

  Minus Strand HSPs:

 Score = 293 (103.1 bits), Expect = 2.1e-31, Sum P(2) = 2.1e-31
 Identities = 55/83 (66%), Positives = 66/83 (79%), Frame = -3

Query:   482 RKTLTPMGGFPHYGVVKDDFIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDT 303
             +KT+TPMGGF HYG +K+DFIMVKGC  G +KR++TLR+SL   TSR ALEE+ LK+IDT
Sbjct:   302 KKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRKSLYTNTSRKALEEVSLKWIDT 361

Query:   302 SSKFGHGRFQTTQEKQKFFGRLK 234
             +SKFG GRFQT  EK  F G LK
Sbjct:   362 ASKFGKGRFQTPAEKHAFMGTLK 384

 Score = 77 (27.1 bits), Expect = 2.1e-31, Sum P(2) = 2.1e-31
 Identities = 17/45 (37%), Positives = 25/45 (55%), Frame = -2

Query:   588 RNGYHHRTGVEQEGXTSLAKLGEESHSXLTEFDRTEKDINPNGWF 454
             + GYH RT +  +    + K G++  +  T FDRT+K I P G F
Sbjct:   269 QRGYHSRTSINHK-IYRVGK-GDDEANGATSFDRTKKTITPMGGF 311


 >gi|81657|pir||JQ0771  ribosomal protein L3.e (clone ARP1), cytosolic -
            Arabidopsis thaliana >gi|166858|gb|AAA66160.1| (M32654) ribosomal
            protein [Arabidopsis thaliana]
            Length = 389

Frame -2 hits (HSPs):                                     _______         
Frame -3 hits (HSPs):                                    _________________
Annotated Domains:                                 ____                   
                        __________________________________________________
Database sequence:     |                   |                  |           | 389
                       0                 150                300
__________________

Annotated Domains:
   PROSITE              RIBOSOMAL_L3: Ribosomal protein L3 signa 212..235
__________________


  Minus Strand HSPs:

 Score = 352 (123.9 bits), Expect = 3.7e-31, P = 3.7e-31
 Identities = 73/128 (57%), Positives = 93/128 (72%), Frame = -3

Query:   620 RVSFNCCQ-GWSGMDTTTELELNKKVXQAWQ-SWERNLTLXXRSLIGPRKTLTPMGGFPH 447
             RVS+   + G +G    TEL  NKK+ +  +   E +  +         K +TPMGGFPH
Sbjct:   262 RVSYTVARAGQNGYHHRTEL--NKKIYRLGKVGTEAHTAMTEYDRT--EKDVTPMGGFPH 317

Query:   446 YGVVKDDFIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQTT 267
             YG+VKDD+ M+KGCCVG KKRV+TLRQSLL QTSR+ALEEIKLKFIDT+S FGHG+FQT+
Sbjct:   318 YGIVKDDYFMIKGCCVGAKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGQFQTS 377

Query:   266 QEKQKFFGRL 237
              EK +F+ R+
Sbjct:   378 LEKMRFYNRV 387

 Score = 136 (47.9 bits), Expect = 3.7e-06, P = 3.7e-06
 Identities = 24/46 (52%), Positives = 34/46 (73%), Frame = -2

Query:   588 RNGYHHRTGVEQEGXTSLAKLGEESHSXLTEFDRTEKDINPNGWFP 451
             +NGYHHRT + ++    L K+G E+H+ +TE+DRTEKD+ P G FP
Sbjct:   272 QNGYHHRTELNKK-IYRLGKVGTEAHTAMTEYDRTEKDVTPMGGFP 316


 >gi|6174955|sp|P17094|RL3A_ARATH  60S RIBOSOMAL PROTEIN L3
            Length = 389

Frame -2 hits (HSPs):                                     _______         
Frame -3 hits (HSPs):                                    _________________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                   |                  |           | 389
                       0                 150                300
__________________

Annotated Domains:
   BLOCKS               BL00474A: Ribosomal protein L3 proteins. 45..55
   BLOCKS               BL00474B: Ribosomal protein L3 proteins. 79..108
   BLOCKS               BL00474C: Ribosomal protein L3 proteins. 211..245
   BLOCKS               BL00474D: Ribosomal protein L3 proteins. 252..288
   DOMO                 DM00797: RIBOSOMALPROTEINL3              1..115
   DOMO                 DM00364: RIBOSOMALPROTEINL3              117..342
   PFAM                 Ribosomal_L3: Ribosomal protein L3       49..342
   PRODOM               PD003396: RL3(16) RL3A(2) RL3B(2)        4..188
   PRODOM               PD001374: RL3(36) RK3(4) RM03(3)         200..285
   PRODOM               PD004346: RL3(11) RL3A(2) RL3B(2)        305..365
   PRODOM               PD105234: RL3A_ARATH                     367..387
   PROSITE              RIBOSOMAL_L3: Ribosomal protein L3 signa 212..235
__________________


  Minus Strand HSPs:

 Score = 352 (123.9 bits), Expect = 3.7e-31, P = 3.7e-31
 Identities = 73/128 (57%), Positives = 93/128 (72%), Frame = -3

Query:   620 RVSFNCCQ-GWSGMDTTTELELNKKVXQAWQ-SWERNLTLXXRSLIGPRKTLTPMGGFPH 447
             RVS+   + G +G    TEL  NKK+ +  +   E +  +         K +TPMGGFPH
Sbjct:   262 RVSYTVARAGQNGYHHRTEL--NKKIYRLGKVGTEAHTAMTEYDRT--EKDVTPMGGFPH 317

Query:   446 YGVVKDDFIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQTT 267
             YG+VKDD+ M+KGCCVG KKRV+TLRQSLL QTSR+ALEEIKLKFIDT+S FGHG+FQT+
Sbjct:   318 YGIVKDDYFMIKGCCVGAKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGQFQTS 377

Query:   266 QEKQKFFGRL 237
              EK +F+ R+
Sbjct:   378 LEKMRFYNRV 387

 Score = 136 (47.9 bits), Expect = 3.7e-06, P = 3.7e-06
 Identities = 24/46 (52%), Positives = 34/46 (73%), Frame = -2

Query:   588 RNGYHHRTGVEQEGXTSLAKLGEESHSXLTEFDRTEKDINPNGWFP 451
             +NGYHHRT + ++    L K+G E+H+ +TE+DRTEKD+ P G FP
Sbjct:   272 QNGYHHRTELNKK-IYRLGKVGTEAHTAMTEYDRTEKDVTPMGGFP 316


 >gi|4826988  ref|NP_005052.1| ribosomal protein L3-like [Homo sapiens]
            >gi|2500230|sp|Q92901|RL3L_HUMAN 60S RIBOSOMAL PROTEIN L3-LIKE
            >gi|1638884|gb|AAC50777.1| (U65581) ribosomal protein L3-like [Homo
            sapiens]
            Length = 407

Frame -2 hits (HSPs):                                    _______          
Frame -3 hits (HSPs):                                         ___________ 
                        __________________________________________________
Database sequence:     |                  |                 |             | 407
                       0                150               300

  Minus Strand HSPs:

 Score = 299 (105.3 bits), Expect = 1.8e-30, Sum P(2) = 1.8e-30
 Identities = 56/82 (68%), Positives = 67/82 (81%), Frame = -3

Query:   479 KTLTPMGGFPHYGVVKDDFIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTS 300
             K++TP+GGFPHYG V +DF+M+KGC  G KKRVITLR+SLL   SR A+E I+LKFIDT+
Sbjct:   312 KSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQAVENIELKFIDTT 371

Query:   299 SKFGHGRFQTTQEKQKFFGRLK 234
             SKFGHGRFQT QEK+ F G  K
Sbjct:   372 SKFGHGRFQTAQEKRAFMGPQK 393

 Score = 62 (21.8 bits), Expect = 1.8e-30, Sum P(2) = 1.8e-30
 Identities = 17/51 (33%), Positives = 26/51 (50%), Frame = -2

Query:   588 RNGYHHRTGVEQE----GXTSLAKLGE-ESHSXLTEFDRTEKDINPNGWFP 451
             + GYHHRT + ++    G     + G+   ++  T +D T K I P G FP
Sbjct:   271 QKGYHHRTELNKKIFRIGRGPHMEDGKLVKNNASTSYDVTAKSITPLGGFP 321


 >gi|12739510  ref|XP_007920.2| ribosomal protein L3-like [Homo sapiens]
            Length = 422

Frame -2 hits (HSPs):                                    _______          
Frame -3 hits (HSPs):                                         ___________ 
                        __________________________________________________
Database sequence:     |                 |                 |              | 422
                       0               150               300

  Minus Strand HSPs:

 Score = 299 (105.3 bits), Expect = 1.8e-30, Sum P(2) = 1.8e-30
 Identities = 56/82 (68%), Positives = 67/82 (81%), Frame = -3

Query:   479 KTLTPMGGFPHYGVVKDDFIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTS 300
             K++TP+GGFPHYG V +DF+M+KGC  G KKRVITLR+SLL   SR A+E I+LKFIDT+
Sbjct:   327 KSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQAVENIELKFIDTT 386

Query:   299 SKFGHGRFQTTQEKQKFFGRLK 234
             SKFGHGRFQT QEK+ F G  K
Sbjct:   387 SKFGHGRFQTAQEKRAFMGPQK 408

 Score = 62 (21.8 bits), Expect = 1.8e-30, Sum P(2) = 1.8e-30
 Identities = 17/51 (33%), Positives = 26/51 (50%), Frame = -2

Query:   588 RNGYHHRTGVEQE----GXTSLAKLGE-ESHSXLTEFDRTEKDINPNGWFP 451
             + GYHHRT + ++    G     + G+   ++  T +D T K I P G FP
Sbjct:   286 QKGYHHRTELNKKIFRIGRGPHMEDGKLVKNNASTSYDVTAKSITPLGGFP 336


 >gi|3861468|emb|CAA10068.1|  (AJ012585) ribosomal protein L3 [Tetrahymena
            thermophila]
            Length = 391

Frame -3 hits (HSPs):                                      ______________ 
                        __________________________________________________
Database sequence:     |                   |                  |           | 391
                       0                 150                300

  Minus Strand HSPs:

 Score = 335 (117.9 bits), Expect = 2.4e-29, P = 2.4e-29
 Identities = 65/108 (60%), Positives = 79/108 (73%), Frame = -3

Query:   563 ELNKKVXQAWQSWERNLTLXXRSLIGPRKTLTPMGGFPHYGVVKDDFIMVKGCCVGPKKR 384
             E NKKV +  +  + +       +    K +TP+GGFPHYGVVK+DFIM+KGCCVGPKKR
Sbjct:   275 ETNKKVYRVGKGDDASNASTAGDVTD--KAITPLGGFPHYGVVKNDFIMIKGCCVGPKKR 332

Query:   383 VITLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQTTQEKQKFFGR 240
             V+TLR+S++ QT   A E I LKFIDTSSK GHGRFQT +EK KFFGR
Sbjct:   333 VLTLRKSIIPQTHGAAKEIINLKFIDTSSKIGHGRFQTVEEKDKFFGR 380


 >gi|548771|sp|P36584|RL3B_SCHPO  60S RIBOSOMAL PROTEIN L3-B
            >gi|101073|pir||S25592 ribosomal protein L3.e, cytosolic - fission
            yeast  (Schizosaccharomyces pombe) >gi|5059|emb|CAA40901.1|
            (X57734) ribosomal protein L3 [Schizosaccharomyces pombe]
            Length = 388

Frame -2 hits (HSPs):                                     ______          
Frame -3 hits (HSPs):                                         ____________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                   |                  |           | 388
                       0                 150                300
__________________

Annotated Domains:
   BLOCKS               BL00474A: Ribosomal protein L3 proteins. 45..55
   BLOCKS               BL00474B: Ribosomal protein L3 proteins. 79..108
   BLOCKS               BL00474C: Ribosomal protein L3 proteins. 208..242
   BLOCKS               BL00474D: Ribosomal protein L3 proteins. 249..285
   PFAM                 Ribosomal_L3: Ribosomal protein L3       49..338
   PRODOM               PD003396: RL3(16) RL3A(2) RL3B(2)        4..183
   PRODOM               PD001374: RL3(36) RK3(4) RM03(3)         201..283
   PRODOM               PD004346: RL3(11) RL3A(2) RL3B(2)        301..362
   PRODOM               PD036321: RL3A(1) RL3B(1)                364..386
   PROSITE              RIBOSOMAL_L3: Ribosomal protein L3 signa 209..232
__________________


  Minus Strand HSPs:

 Score = 272 (95.7 bits), Expect = 2.3e-28, Sum P(2) = 2.3e-28
 Identities = 52/82 (63%), Positives = 64/82 (78%), Frame = -3

Query:   479 KTLTPMGGFPHYGVVKDDFIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTS 300
             K +TPMGGF  YGVV++DF+M+ G   GP KRV+TLR+SLL  TSR ALE + LK+IDT+
Sbjct:   303 KRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTA 362

Query:   299 SKFGHGRFQTTQEKQKFFGRLK 234
             SKFGHGRFQT  E ++F G LK
Sbjct:   363 SKFGHGRFQTPAEAKQFLGTLK 384

 Score = 69 (24.3 bits), Expect = 2.3e-28, Sum P(2) = 2.3e-28
 Identities = 17/43 (39%), Positives = 24/43 (55%), Frame = -2

Query:   582 GYHHRTGVEQEGXTSLAKLGEESHSXLTEFDRTEKDINPNGWF 454
             GY HRT +  +     A  G+++ +  T+FD TEK I P G F
Sbjct:   271 GYMHRTQLNSKIYRIGA--GDDAKNASTDFDATEKRITPMGGF 311


 >gi|730556|sp|P40372|RL3A_SCHPO  60S RIBOSOMAL PROTEIN L3-A
            >gi|7490031|pir||T37818 60s ribosomal protein L3 - fission yeast
            (Schizosaccharomyces pombe) >gi|508856|gb|AAA19655.1| (U00798)
            ribosomal protein L3 [Schizosaccharomyces pombe]
            >gi|2370475|emb|CAB11503.1| (Z98849) 60s ribosomal protein L3
            [Schizosaccharomyces pombe]
            Length = 388

Frame -2 hits (HSPs):                                     ______          
Frame -3 hits (HSPs):                                         ____________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                   |                  |           | 388
                       0                 150                300
__________________

Annotated Domains:
   BLOCKS               BL00474A: Ribosomal protein L3 proteins. 45..55
   BLOCKS               BL00474B: Ribosomal protein L3 proteins. 79..108
   BLOCKS               BL00474C: Ribosomal protein L3 proteins. 208..242
   BLOCKS               BL00474D: Ribosomal protein L3 proteins. 249..285
   DOMO                 DM00797: RIBOSOMALPROTEINL3              43..115
   DOMO                 DM00364: RIBOSOMALPROTEINL3              117..338
   DOMO                 DM01452: RIBOSOMALPROTEINL3              340..386
   PFAM                 Ribosomal_L3: Ribosomal protein L3       49..338
   PRODOM               PD003396: RL3(16) RL3A(2) RL3B(2)        4..183
   PRODOM               PD001374: RL3(36) RK3(4) RM03(3)         201..283
   PRODOM               PD004346: RL3(11) RL3A(2) RL3B(2)        301..362
   PRODOM               PD036321: RL3A(1) RL3B(1)                364..386
   PROSITE              RIBOSOMAL_L3: Ribosomal protein L3 signa 209..232
__________________


  Minus Strand HSPs:

 Score = 272 (95.7 bits), Expect = 2.3e-28, Sum P(2) = 2.3e-28
 Identities = 52/82 (63%), Positives = 64/82 (78%), Frame = -3

Query:   479 KTLTPMGGFPHYGVVKDDFIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTS 300
             K +TPMGGF  YGVV++DF+M+ G   GP KRV+TLR+SLL  TSR ALE + LK+IDT+
Sbjct:   303 KRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTA 362

Query:   299 SKFGHGRFQTTQEKQKFFGRLK 234
             SKFGHGRFQT  E ++F G LK
Sbjct:   363 SKFGHGRFQTPAEAKQFLGTLK 384

 Score = 69 (24.3 bits), Expect = 2.3e-28, Sum P(2) = 2.3e-28
 Identities = 17/43 (39%), Positives = 24/43 (55%), Frame = -2

Query:   582 GYHHRTGVEQEGXTSLAKLGEESHSXLTEFDRTEKDINPNGWF 454
             GY HRT +  +     A  G+++ +  T+FD TEK I P G F
Sbjct:   271 GYMHRTQLNSKIYRIGA--GDDAKNASTDFDATEKRITPMGGF 311


 >gi|6537320|gb|AAF15600.1|AF198447_1  (AF198447) 60S ribosomal protein L3
            [Aspergillus nidulans]
            Length = 392

Frame -2 hits (HSPs):                                     ______          
Frame -3 hits (HSPs):                                         ___________ 
                        __________________________________________________
Database sequence:     |                   |                  |           | 392
                       0                 150                300

  Minus Strand HSPs:

 Score = 264 (92.9 bits), Expect = 1.0e-27, Sum P(2) = 1.0e-27
 Identities = 51/83 (61%), Positives = 65/83 (78%), Frame = -3

Query:   482 RKTLTPMGGFPHYGVVKDDFIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDT 303
             +K +TP+GGF  YG VK+DFI++KG   G KKRV+TLR++L  QTSR A E++ LK+IDT
Sbjct:   303 KKQITPLGGFVRYGEVKNDFILLKGSVPGVKKRVMTLRKTLYPQTSRRATEKVDLKWIDT 362

Query:   302 SSKFGHGRFQTTQEKQKFFGRLK 234
             SSKFGHG FQT +EK+ F G LK
Sbjct:   363 SSKFGHGAFQTPEEKRAFMGTLK 385

 Score = 71 (25.0 bits), Expect = 1.0e-27, Sum P(2) = 1.0e-27
 Identities = 16/43 (37%), Positives = 25/43 (58%), Frame = -2

Query:   582 GYHHRTGVEQEGXTSLAKLGEESHSXLTEFDRTEKDINPNGWF 454
             GYHHRT    +    + K  +E+++  T+FD ++K I P G F
Sbjct:   272 GYHHRTSCNHK-VFRIGKGSDEANAS-TDFDVSKKQITPLGGF 312


 >gi|1350745|sp|P49149|RL3_TOXCA  60S RIBOSOMAL PROTEIN L3
            >gi|2119105|pir||JC4382 ribosomal protein L3.e, cytosolic -
            Toxocara canis >gi|596082|gb|AAA92285.1| (U17358) ribosomal protein
            L3 [Toxocara canis]
            Length = 402

Frame -2 hits (HSPs):                                    _______          
Frame -3 hits (HSPs):                                   _________________ 
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                  |                  |            | 402
                       0                150                300
__________________

Annotated Domains:
   DOMO                 DM00797: RIBOSOMALPROTEINL3              1..115
   DOMO                 DM00364: RIBOSOMALPROTEINL3              117..344
   DOMO                 DM01452: RIBOSOMALPROTEINL3              346..400
   PFAM                 Ribosomal_L3: Ribosomal protein L3       49..344
   PRODOM               PD003396: RL3(16) RL3A(2) RL3B(2)        4..187
   PRODOM               PD001374: RL3(36) RK3(4) RM03(3)         202..284
   PRODOM               PD105235: RL3_TOXCA                      286..305
   PRODOM               PD004346: RL3(11) RL3A(2) RL3B(2)        307..368
   PRODOM               PD036322: RL3(2)                         371..397
   PROSITE              RIBOSOMAL_L3: Ribosomal protein L3 signa 211..234
__________________


  Minus Strand HSPs:

 Score = 314 (110.5 bits), Expect = 4.0e-27, P = 4.0e-27
 Identities = 68/130 (52%), Positives = 85/130 (65%), Frame = -3

Query:   620 RVSFNCCQ-GWSGMDTTTELELNKKVXQAWQSW--ERNLTLXXRSLIGPRKTLTPMGGFP 450
             RV F   + G  G    TE+  NKK+ +  +S   E              K++ PMGGFP
Sbjct:   261 RVQFTVARAGQKGYHHRTEV--NKKIYRLGKSCLTEEGKKNGGTDYDITEKSVNPMGGFP 318

Query:   449 HYGVVKDDFIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQT 270
             HYG+V  DF+M++GCCVG KKR ITLR+SL+ QT R A E+I LK+IDTSSKFGHGRFQT
Sbjct:   319 HYGLVNQDFVMIRGCCVGSKKRPITLRKSLIVQTKRFAHEKINLKWIDTSSKFGHGRFQT 378

Query:   269 TQEKQKFFGRLK 234
               EK+ F G+LK
Sbjct:   379 HAEKRAFMGKLK 390

 Score = 91 (32.0 bits), Expect = 1.2, P = 0.69
 Identities = 20/48 (41%), Positives = 31/48 (64%), Frame = -2

Query:   588 RNGYHHRTGVEQE----GXTSLAKLGEESHSXLTEFDRTEKDINPNGWFP 451
             + GYHHRT V ++    G + L + G+++    T++D TEK +NP G FP
Sbjct:   271 QKGYHHRTEVNKKIYRLGKSCLTEEGKKNGG--TDYDITEKSVNPMGGFP 318


 >gi|7159574|emb|CAB76199.1|  (AJ238851) ribosomal protein L3 [Bos taurus]
            Length = 403

Frame -3 hits (HSPs):                                   _________________ 
                        __________________________________________________
Database sequence:     |                  |                  |            | 403
                       0                150                300

  Minus Strand HSPs:

 Score = 307 (108.1 bits), Expect = 2.2e-26, P = 2.2e-26
 Identities = 70/133 (52%), Positives = 89/133 (66%), Frame = -3

Query:   620 RVSFNCCQ-GWSGMDTTTELELNKKVXQAWQSW---ERNLTLXXRSLIGPR--KTLTPMG 459
             RV+F+  + G  G    TE+  NKK+ +  Q +   +  L     S       K++ P+G
Sbjct:   261 RVAFSVARAGQKGYHHRTEI--NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLG 318

Query:   458 GFPHYGVVKDDFIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGR 279
             GF HYG V +DF+M+KGC VG KKRV+TLR+SLL QT R ALEEI LKFIDT+SKFGHGR
Sbjct:   319 GFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEEIDLKFIDTTSKFGHGR 378

Query:   278 FQTTQEKQKFFGRLK 234
             FQT +EK+ F G LK
Sbjct:   379 FQTVEEKKAFMGPLK 393


 >gi|132958|sp|P21531|RL3_RAT  60S RIBOSOMAL PROTEIN L3 (L4)
            >gi|71095|pir||R5RT3L ribosomal protein L3, cytosolic [validated] -
            rat >gi|57698|emb|CAA44095.1| (X62166) ribosomal protein L3 [Rattus
            rattus]
            Length = 403

Frame -3 hits (HSPs):                                   _________________ 
                        __________________________________________________
Database sequence:     |                  |                  |            | 403
                       0                150                300

  Minus Strand HSPs:

 Score = 303 (106.7 bits), Expect = 5.8e-26, P = 5.8e-26
 Identities = 70/133 (52%), Positives = 89/133 (66%), Frame = -3

Query:   620 RVSFNCCQ-GWSGMDTTTELELNKKVXQAWQSW---ERNLTLXXRSLIGPR--KTLTPMG 459
             RV+F+  + G  G    TE+  NKK+ +  Q +   +  L     S       K++ P+G
Sbjct:   261 RVAFSVARAGQKGYHHRTEI--NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLG 318

Query:   458 GFPHYGVVKDDFIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGR 279
             GF HYG V +DFIM+KGC VG KKRV+TLR+SLL QT R ALE+I LKFIDT+SKFGHGR
Sbjct:   319 GFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGR 378

Query:   278 FQTTQEKQKFFGRLK 234
             FQT +EK+ F G LK
Sbjct:   379 FQTMEEKKAFMGPLK 393


 >gi|730564|sp|P39872|RL3_BOVIN  60S RIBOSOMAL PROTEIN L3 >gi|1083080|pir||S50221
            ribosomal protein L3, cytosolic - bovine >gi|450499|emb|CAA82654.1|
            (Z29555) ribosomal protein L3 [Bos taurus]
            >gi|1092507|prf||2024221A ribosomal protein L3 [Bos taurus]
            Length = 403

Frame -3 hits (HSPs):                                   _________________ 
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                  |                  |            | 403
                       0                150                300
__________________

Annotated Domains:
   DOMO                 DM00797: RIBOSOMALPROTEINL3              1..115
   DOMO                 DM00364: RIBOSOMALPROTEINL3              117..347
   DOMO                 DM01452: RIBOSOMALPROTEINL3              349..401
   PFAM                 Ribosomal_L3: Ribosomal protein L3       49..347
   PRODOM               PD003396: RL3(16) RL3A(2) RL3B(2)        4..187
   PRODOM               PD001374: RL3(36) RK3(4) RM03(3)         202..285
   PRODOM               PD016858: RL3(4)                         287..309
   PRODOM               PD004346: RL3(11) RL3A(2) RL3B(2)        311..371
   PRODOM               PD016859: RL3(4)                         373..401
   PROSITE              RIBOSOMAL_L3: Ribosomal protein L3 signa 211..234
__________________


  Minus Strand HSPs:

 Score = 303 (106.7 bits), Expect = 5.8e-26, P = 5.8e-26
 Identities = 69/133 (51%), Positives = 89/133 (66%), Frame = -3

Query:   620 RVSFNCCQ-GWSGMDTTTELELNKKVXQAWQSW---ERNLTLXXRSLIGPR--KTLTPMG 459
             RV+F+  + G  G    TE+  NKK+ +  Q +   +  L     S       K++ P+G
Sbjct:   261 RVAFSVARAGQKGYHHRTEI--NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLG 318

Query:   458 GFPHYGVVKDDFIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGR 279
             GF HYG V +DF+M+KGC VG KKRV+TLR+SLL QT R ALE+I LKFIDT+SKFGHGR
Sbjct:   319 GFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGR 378

Query:   278 FQTTQEKQKFFGRLK 234
             FQT +EK+ F G LK
Sbjct:   379 FQTVEEKKAFMGPLK 393


 >gi|7305441  ref|NP_038790.1| ribosomal protein L3 [Mus musculus]
            >gi|132956|sp|P27659|RL3_MOUSE 60S RIBOSOMAL PROTEIN L3 (J1
            PROTEIN) >gi|52741|emb|CAA68370.1| (Y00225) J1 protein [Mus
            musculus] >gi|226725|prf||1604248A J1 protein [Moloney murine
            leukemia virus]
            Length = 403

Frame -3 hits (HSPs):                                   _________________ 
                        __________________________________________________
Database sequence:     |                  |                  |            | 403
                       0                150                300

  Minus Strand HSPs:

 Score = 302 (106.3 bits), Expect = 7.4e-26, P = 7.4e-26
 Identities = 70/133 (52%), Positives = 88/133 (66%), Frame = -3

Query:   620 RVSFNCCQ-GWSGMDTTTELELNKKVXQAWQSW---ERNLTLXXRSLIGPR--KTLTPMG 459
             RV+F   + G  G    TE+  NKK+ +  Q +   +  L     S       K++ P+G
Sbjct:   261 RVAFTVARAGQKGYHHRTEI--NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLG 318

Query:   458 GFPHYGVVKDDFIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGR 279
             GF HYG V +DFIM+KGC VG KKRV+TLR+SLL QT R ALE+I LKFIDT+SKFGHGR
Sbjct:   319 GFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGR 378

Query:   278 FQTTQEKQKFFGRLK 234
             FQT +EK+ F G LK
Sbjct:   379 FQTMEEKKAFMGPLK 393


 >gi|4506649  ref|NP_000958.1| ribosomal protein L3 [Homo sapiens] >gi|12742824
            ref|XP_009998.2| ribosomal protein L3 [Homo sapiens]
            >gi|730565|sp|P39023|RL3_HUMAN 60S RIBOSOMAL PROTEIN L3 (HIV-1 TAR
            RNA BINDING PROTEIN B) (TARBP-B) >gi|423069|pir||S34195 ribosomal
            protein L3, cytosolic - human >gi|313659|emb|CAA51839.1| (X73460)
            ribosomal protein L3 [Homo sapiens] >gi|3850177|emb|CAA18450.1|
            (AL022326) dJ333H23.1 (60S Ribosomal Protein L3) [Homo sapiens]
            Length = 403

Frame -3 hits (HSPs):                                   _________________ 
                        __________________________________________________
Database sequence:     |                  |                  |            | 403
                       0                150                300

  Minus Strand HSPs:

 Score = 302 (106.3 bits), Expect = 7.4e-26, P = 7.4e-26
 Identities = 69/133 (51%), Positives = 89/133 (66%), Frame = -3

Query:   620 RVSFNCCQ-GWSGMDTTTELELNKKVXQAWQSW---ERNLTLXXRSLIGPR--KTLTPMG 459
             RV+F+  + G  G    TE+  NKK+ +  Q +   +  L     S       K++ P+G
Sbjct:   261 RVAFSVARAGQKGYHHRTEI--NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLG 318

Query:   458 GFPHYGVVKDDFIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGR 279
             GF HYG V +DF+M+KGC VG KKRV+TLR+SLL QT R ALE+I LKFIDT+SKFGHGR
Sbjct:   319 GFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGR 378

Query:   278 FQTTQEKQKFFGRLK 234
             FQT +EK+ F G LK
Sbjct:   379 FQTMEEKKAFMGPLK 393


 >gi|2119106|pir||I84501  ribosomal protein L3 - human (fragment)
            >gi|337580|gb|AAA60291.1| (M90054) ribosomal protein L3 [Homo
            sapiens]
            Length = 398

Frame -3 hits (HSPs):                                   _________________ 
Annotated Domains:                               ____                     
                        __________________________________________________
Database sequence:     |                  |                  |            | 398
                       0                150                300
__________________

Annotated Domains:
   PROSITE              RIBOSOMAL_L3: Ribosomal protein L3 signa 206..229
__________________


  Minus Strand HSPs:

 Score = 302 (106.3 bits), Expect = 7.4e-26, P = 7.4e-26
 Identities = 69/133 (51%), Positives = 89/133 (66%), Frame = -3

Query:   620 RVSFNCCQ-GWSGMDTTTELELNKKVXQAWQSW---ERNLTLXXRSLIGPR--KTLTPMG 459
             RV+F+  + G  G    TE+  NKK+ +  Q +   +  L     S       K++ P+G
Sbjct:   256 RVAFSVARAGQKGYHHRTEI--NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLG 313

Query:   458 GFPHYGVVKDDFIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGR 279
             GF HYG V +DF+M+KGC VG KKRV+TLR+SLL QT R ALE+I LKFIDT+SKFGHGR
Sbjct:   314 GFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGR 373

Query:   278 FQTTQEKQKFFGRLK 234
             FQT +EK+ F G LK
Sbjct:   374 FQTMEEKKAFMGPLK 388


 >gi|7159730|emb|CAB76201.1|  (AJ238852) ribosomal protein L3 [Homo sapiens]
            Length = 343

Frame -3 hits (HSPs):                                _____________________
                        __________________________________________________
Database sequence:     |                     |                     |      | 343
                       0                   150                   300

  Minus Strand HSPs:

 Score = 302 (106.3 bits), Expect = 7.4e-26, P = 7.4e-26
 Identities = 69/133 (51%), Positives = 89/133 (66%), Frame = -3

Query:   620 RVSFNCCQ-GWSGMDTTTELELNKKVXQAWQSW---ERNLTLXXRSLIGPR--KTLTPMG 459
             RV+F+  + G  G    TE+  NKK+ +  Q +   +  L     S       K++ P+G
Sbjct:   206 RVAFSVARAGQKGYHHRTEI--NKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLG 263

Query:   458 GFPHYGVVKDDFIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGR 279
             GF HYG V +DF+M+KGC VG KKRV+TLR+SLL QT R ALE+I LKFIDT+SKFGHGR
Sbjct:   264 GFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGR 323

Query:   278 FQTTQEKQKFFGRLK 234
             FQT +EK+ F G LK
Sbjct:   324 FQTMEEKKAFMGPLK 338


 >gi|464637|sp|P34113|RL3_DICDI  60S RIBOSOMAL PROTEIN L3 >gi|1363618|pir||JC4254
            ribosomal protein L3.e, cytosolic - slime mold  (Dictyostelium
            discoideum) >gi|167816|gb|AAA99508.1| (L08391) ribosomal protein
            [Dictyostelium discoideum]
            Length = 398

Frame -3 hits (HSPs):                                     ________________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                  |                  |            | 398
                       0                150                300
__________________

Annotated Domains:
   DOMO                 DM00797: RIBOSOMALPROTEINL3              43..116
   DOMO                 DM00364: RIBOSOMALPROTEINL3              118..346
   DOMO                 DM01452: RIBOSOMALPROTEINL3              348..396
   PFAM                 Ribosomal_L3: Ribosomal protein L3       49..346
   PRODOM               PD003396: RL3(16) RL3A(2) RL3B(2)        4..191
   PRODOM               PD001374: RL3(36) RK3(4) RM03(3)         203..286
   PRODOM               PD004346: RL3(11) RL3A(2) RL3B(2)        309..370
   PRODOM               PD105239: RL3_DICDI                      372..396
   PROSITE              RIBOSOMAL_L3: Ribosomal protein L3 signa 212..235
__________________


  Minus Strand HSPs:

 Score = 292 (102.8 bits), Expect = 8.5e-25, P = 8.5e-25
 Identities = 57/115 (49%), Positives = 78/115 (67%), Frame = -3

Query:   566 LELNKKVXQAWQSWE---RNLTLXXRSLIGPRKTLTPMGGFPHYGVVKDDFIMVKGCCVG 396
             +E NKK+ +  Q+     + ++          KT+ PMGGF HYG+VK +F+M+KGC  G
Sbjct:   279 VERNKKIYRIGQAQPEDGKQISTGKTEFDLTEKTINPMGGFAHYGMVKHEFLMLKGCVAG 338

Query:   395 PKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQTTQEKQKFFGRLKA 231
             P+KR +TLR+S+  QT R ALE+I LKFIDTSSKFGHG  QT ++K K+FG  K+
Sbjct:   339 PRKRALTLRKSITTQTGRAALEKITLKFIDTSSKFGHGLHQTAEDKTKYFGVKKS 393


 >gi|7417236|gb|AAF62506.1|  (AF225211) ribosomal protein L3 [Trypanoplasma
            borreli]
            Length = 416

Frame -3 hits (HSPs):                                  ________________   
                        __________________________________________________
Database sequence:     |                 |                 |              | 416
                       0               150               300

  Minus Strand HSPs:

 Score = 274 (96.5 bits), Expect = 9.1e-23, P = 9.1e-23
 Identities = 59/129 (45%), Positives = 82/129 (63%), Frame = -3

Query:   620 RVSFNCCQ-GWSGMDTTTELELNKKVXQAWQSWERNLTLXXRSLIGPRKTLTPMGGFPHY 444
             RV +   + G +G    T L  NKK+ +  +S   +      +     K +TPMGGF  Y
Sbjct:   264 RVMYTVARAGQNGYHHRTHL--NKKIYRIGRSSSVDPKQATTTYDLTEKVITPMGGFVGY 321

Query:   443 GVVKDDFIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQTTQ 264
             G V++DFIM+KG   GP++RV+TLR+ +  QTSR   E+I LKFIDTS+K GHGRFQT +
Sbjct:   322 GTVRNDFIMLKGSVAGPRRRVVTLRRPMAPQTSRALTEKIVLKFIDTSAKMGHGRFQTKK 381

Query:   263 EKQKFFGRLK 234
             EK ++FG +K
Sbjct:   382 EKSQWFGPMK 391


 >gi|3088345|dbj|BAA25828.1|  (AB007166) ribosomal protein L3 [Homo sapiens]
            Length = 71

Frame -3 hits (HSPs):   ______________________________________________    
                        __________________________________________________
Database sequence:     |             |             |             |        | 71
                       0            20            40            60

  Minus Strand HSPs:

 Score = 242 (85.2 bits), Expect = 1.7e-19, P = 1.7e-19
 Identities = 47/66 (71%), Positives = 56/66 (84%), Frame = -3

Query:   431 DDFIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFGHGRFQTTQEKQK 252
             +DF+M+KGC VG KKRV+TLR+SLL QT R ALE+I LKFIDT+SKFGHGRFQT +EK+ 
Sbjct:     1 NDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKA 60

Query:   251 FFGRLK 234
             F G LK
Sbjct:    61 FMGPLK 66


 >gi|6049122|gb|AAF02464.1|AF127447_1  (AF127447) 60S ribosomal protein L3 [Picea
            abies] >gi|6049124|gb|AAF02465.1|AF127448_1 (AF127448) 60S
            ribosomal protein L3 [Picea abies]
            Length = 33

Frame -3 hits (HSPs):   __________________________________________________
                        __________________________________________________
Database sequence:     |                            |                     | 33
                       0                           20

  Minus Strand HSPs:

 Score = 155 (54.6 bits), Expect = 2.8e-10, P = 2.8e-10
 Identities = 30/33 (90%), Positives = 31/33 (93%), Frame = -3

Query:   329 EIKLKFIDTSSKFGHGRFQTTQEKQKFFGRLKA 231
             EIKLKFIDTSSKFGHGRFQTTQEK K FG+LKA
Sbjct:     1 EIKLKFIDTSSKFGHGRFQTTQEKAKIFGKLKA 33


 >gi|9910846|sp|Q9V1T5|RL3_PYRAB  50S RIBOSOMAL PROTEIN L3P
            >gi|7440659|pir||A75148 lsu ribosomal protein l3p (rpl3p) PAB2120 -
            Pyrococcus abyssi (strain Orsay) >gi|5457774|emb|CAB49264.1|
            (AJ248284) LSU ribosomal protein L3P (rpl3P) [Pyrococcus abyssi]
            Length = 361

Frame -2 hits (HSPs):                                        ______       
Frame -3 hits (HSPs):                                            _________
                        __________________________________________________
Database sequence:     |                    |                    |        | 361
                       0                  150                  300

  Minus Strand HSPs:

 Score = 127 (44.7 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
 Identities = 21/60 (35%), Positives = 37/60 (61%), Frame = -3

Query:   473 LTPMGGFPHYGVVKDDFIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSK 294
             +TP GGFPHYG+V+ DF+M+ G   G  KR+I +R ++     +  ++  ++ ++   SK
Sbjct:   301 ITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVSVESK 360

 Score = 56 (19.7 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
 Identities = 15/44 (34%), Positives = 21/44 (47%), Frame = -2

Query:   582 GYHHRTGVEQEGXTSLAKLGEESHSXLTEFDRTEKDINPNGWFP 451
             G+HHRT + +     L  +GE     +   D  E +I P G FP
Sbjct:   272 GFHHRTELNKR----LIAIGENGKLVI---DGNEIEITPKGGFP 308


 >gi|6094075|sp|O59418|RL3_PYRHO  50S RIBOSOMAL PROTEIN L3P
            >gi|7440656|pir||H71187 probable ribosomal protein L3 - Pyrococcus
            horikoshii >gi|3258212|dbj|BAA30895.1| (AP000007) 362aa long
            hypothetical 50S ribosomal protein L3 [Pyrococcus horikoshii]
            Length = 362

Frame -2 hits (HSPs):                                        ______       
Frame -3 hits (HSPs):                                            _________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                    |                    |        | 362
                       0                  150                  300
__________________

Annotated Domains:
   PFAM                 Ribosomal_L3: Ribosomal protein L3       45..90
   PFAM                 Ribosomal_L3: Ribosomal protein L3       161..336
   PRODOM               PD003396: RL3(16) RL3A(2) RL3B(2)        3..191
   PRODOM               PD001374: RL3(36) RK3(4) RM03(3)         195..297
   PRODOM               PD004346: RL3(11) RL3A(2) RL3B(2)        299..360
   PROSITE              RIBOSOMAL_L3: Ribosomal protein L3 signa 211..234
__________________


  Minus Strand HSPs:

 Score = 126 (44.4 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
 Identities = 21/60 (35%), Positives = 37/60 (61%), Frame = -3

Query:   473 LTPMGGFPHYGVVKDDFIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSK 294
             +TP GGFPHYG+V+ DF+M+ G   G  KR+I +R ++     +  ++  ++ ++   SK
Sbjct:   302 ITPKGGFPHYGIVRGDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVSVESK 361

 Score = 56 (19.7 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
 Identities = 15/44 (34%), Positives = 21/44 (47%), Frame = -2

Query:   582 GYHHRTGVEQEGXTSLAKLGEESHSXLTEFDRTEKDINPNGWFP 451
             G+HHRT + +     L  +GE     +   D  E +I P G FP
Sbjct:   273 GFHHRTELNKR----LIAIGENGKLVI---DGNEIEITPKGGFP 309


 >gi|1710558|sp|P54014|RL3_METJA  50S RIBOSOMAL PROTEIN L3P
            >gi|2144769|pir||A64322 ribosomal protein L3.eR - Methanococcus
            jannaschii >gi|1590928|gb|AAB98161.1| (U67474) LSU ribosomal
            protein L3P (rplC) [Methanococcus jannaschii]
            Length = 335

Frame -3 hits (HSPs):                                           __________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                      |                     |     | 335
                       0                    150                   300
__________________

Annotated Domains:
   DOMO                 DM00797: RIBOSOMALPROTEINL3              1..95
   DOMO                 DM00364: RIBOSOMALPROTEINL3              97..309
   PFAM                 Ribosomal_L3: Ribosomal protein L3       46..309
   PRODOM               PD003396: RL3(16) RL3A(2) RL3B(2)        3..170
   PRODOM               PD001374: RL3(36) RK3(4) RM03(3)         173..308
   PRODOM               PD105227: RL3_METJA                      310..334
   PROSITE              CECROPIN: Cecropin family signature.     103..113
   PROSITE              RIBOSOMAL_L3: Ribosomal protein L3 signa 190..213
__________________


  Minus Strand HSPs:

 Score = 137 (48.2 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 26/62 (41%), Positives = 43/62 (69%), Frame = -3

Query:   473 LTPMGGFPHYGVVKDDFIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSK 294
             +TP GGF HYGV++++++++KG   GP KR+I LR+++  Q   + + EI   +I T+SK
Sbjct:   275 ITPKGGFLHYGVIRNNYVVLKGSVQGPAKRLIVLRRAIRPQEPLIKVPEIT--YISTTSK 332

Query:   293 FG 288
              G
Sbjct:   333 QG 334


 >gi|11499509  ref|NP_070750.1| LSU ribosomal protein L3P (rpl3P) [Archaeoglobus
            fulgidus] >gi|3914742|sp|O28354|RL3_ARCFU 50S RIBOSOMAL PROTEIN L3P
            >gi|7440657|pir||D69490 LSU ribosomal protein L3P (rpl3P) homolog -
            Archaeoglobus fulgidus >gi|2648621|gb|AAB89331.1| (AE000971) LSU
            ribosomal protein L3P (rpl3P) [Archaeoglobus fulgidus]
            Length = 331

Frame -3 hits (HSPs):                                           __________
                        __________________________________________________
Database sequence:     |                      |                      |    | 331
                       0                    150                    300

  Minus Strand HSPs:

 Score = 120 (42.2 bits), Expect = 0.00030, P = 0.00030
 Identities = 21/62 (33%), Positives = 39/62 (62%), Frame = -3

Query:   473 LTPMGGFPHYGVVKDDFIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSK 294
             +TP GGF HYGV++  +++V G   GP KR+I +R ++  +  +   + + + ++ T+SK
Sbjct:   271 ITPKGGFLHYGVIRTQYVLVTGSVPGPVKRLIRMRDAI--RPPKAHFDGVNIVYVSTTSK 328

Query:   293 FG 288
              G
Sbjct:   329 QG 330


 >gi|3122720|sp|O26110|RL3_METTH  50S RIBOSOMAL PROTEIN L3P
            >gi|7440658|pir||C69124 ribosomal protein L3 - Methanobacterium
            thermoautotrophicum  (strain Delta H) >gi|2621048|gb|AAB84521.1|
            (AE000795) ribosomal protein L3 (E.coli L3) [Methanothermobacter
            thermautotrophicus]
            Length = 337

Frame -3 hits (HSPs):                                           __________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                      |                     |     | 337
                       0                    150                   300
__________________

Annotated Domains:
   PFAM                 Ribosomal_L3: Ribosomal protein L3       45..311
   PRODOM               PD003396: RL3(16) RL3A(2) RL3B(2)        3..169
   PRODOM               PD001374: RL3(36) RK3(4) RM03(3)         178..310
   PRODOM               PD105226: RL3_METTH                      312..336
   PROSITE              RIBOSOMAL_L3: Ribosomal protein L3 signa 190..213
__________________


  Minus Strand HSPs:

 Score = 120 (42.2 bits), Expect = 0.00031, P = 0.00031
 Identities = 23/62 (37%), Positives = 41/62 (66%), Frame = -3

Query:   473 LTPMGGFPHYGVVKDDFIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSK 294
             + P GGF  YG+V++D++M+KG   GP KR++ LR+++  + +    E  ++ +I T+SK
Sbjct:   277 VNPDGGFVRYGLVRNDYVMIKGSVPGPTKRLVVLRKAI--RAAGKQEEAPQINYISTASK 334

Query:   293 FG 288
              G
Sbjct:   335 QG 336


 >gi|9910844|sp|Q9UWG2|RL3_METVA  50S RIBOSOMAL PROTEIN L3P
            Length = 334

Frame -3 hits (HSPs):                                           __________
                        __________________________________________________
Database sequence:     |                      |                     |     | 334
                       0                    150                   300

  Minus Strand HSPs:

 Score = 118 (41.5 bits), Expect = 0.00054, P = 0.00054
 Identities = 24/63 (38%), Positives = 38/63 (60%), Frame = -3

Query:   473 LTPMGGFPHYGVVKDDFIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSK 294
             +TP GGF +YG VK+ +++VKG   GP KR++ LR ++     +  L E+   +I   SK
Sbjct:   274 ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGAVRPAEDKFGLPEVT--YISKESK 331

Query:   293 FGH 285
              G+
Sbjct:   332 QGN 334


 >gi|10640617|emb|CAC12395.1|  (AL445067) 50S ribosomal protein L3 related
            protein [Thermoplasma acidophilum]
            Length = 331

Frame -3 hits (HSPs):                                            _________
                        __________________________________________________
Database sequence:     |                      |                      |    | 331
                       0                    150                    300

  Minus Strand HSPs:

 Score = 113 (39.8 bits), Expect = 0.0021, P = 0.0021
 Identities = 23/58 (39%), Positives = 36/58 (62%), Frame = -3

Query:   461 GGFPHYGVVKDDFIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFG 288
             GGF HYG VK+D++++ G   G  KR+I +R    ++   +  EE+KL++I   SK G
Sbjct:   275 GGFLHYGFVKNDYVLLFGSIPGASKRLIKMRDPARQKVPDI--EEVKLEYISLESKQG 330


 >gi|9910845|sp|Q9UXA8|RL3_SULSO  50S RIBOSOMAL PROTEIN L3P
            >gi|6015757|emb|CAB57584.1| (Y18930) ribosomal protein L3 (HMAL3)
            [Sulfolobus solfataricus] >gi|12312271|emb|CAC23134.1| (AL512964)
            ribosomal protein L3 (HMAL3) [Sulfolobus solfataricus]
            Length = 351

Frame -3 hits (HSPs):                                            _________
                        __________________________________________________
Database sequence:     |                     |                    |       | 351
                       0                   150                  300

  Minus Strand HSPs:

 Score = 100 (35.2 bits), Expect = 0.083, P = 0.080
 Identities = 21/64 (32%), Positives = 39/64 (60%), Frame = -3

Query:   479 KTLTPMGGFPHYGVVKDDFIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTS 300
             K + P GGF  YG+V++ +++++G  +G KKR I LR+ +  + S V     K+ +++  
Sbjct:   290 KEINPAGGFVRYGIVRNTYVLLEGSILGSKKRPIFLREPV--RPSYVFENPPKITYVNLL 347

Query:   299 SKFG 288
             S+ G
Sbjct:   348 SQQG 351


 >gi|10581159|gb|AAG19936.1|  (AE005077) 50S ribosomal protein L13P; Rpl3p
            [Halobacterium sp. NRC-1]
            Length = 335

Frame -3 hits (HSPs):                                            _________
                        __________________________________________________
Database sequence:     |                      |                     |     | 335
                       0                    150                   300

  Minus Strand HSPs:

 Score = 98 (34.5 bits), Expect = 0.13, P = 0.12
 Identities = 21/61 (34%), Positives = 35/61 (57%), Frame = -3

Query:   470 TPMGGFPHYGVVKDDFIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKF 291
             TP GGFP+YG V   + +VKG   GP++R++  R ++    S     E++  ++ T+S  
Sbjct:   277 TPDGGFPNYGEVDGPYTLVKGSVPGPEQRLVRFRPAVRPNESPRLDPEVR--YVSTASNQ 334

Query:   290 G 288
             G
Sbjct:   335 G 335


 >gi|6685859|sp|Q9YFM2|RL3_AERPE  50S RIBOSOMAL PROTEIN L3P
            >gi|7440660|pir||A72780 probable ribosomal protein L3 APE0227 -
            Aeropyrum pernix  (strain K1) >gi|5103618|dbj|BAA79139.1|
            (AP000058) 344aa long hypothetical 50S ribosomal protein L3
            [Aeropyrum pernix]
            Length = 344

Frame -3 hits (HSPs):                                           __________
                        __________________________________________________
Database sequence:     |                     |                     |      | 344
                       0                   150                   300

  Minus Strand HSPs:

 Score = 95 (33.4 bits), Expect = 0.31, P = 0.27
 Identities = 21/64 (32%), Positives = 36/64 (56%), Frame = -3

Query:   473 LTPMGGFPHYGVVKDDFIMVKGCCVGPKKRVITLRQSLLKQT--SRVALEEIKLKFIDTS 300
             +TP GGF  YGVV+  F+M+ G   G  KR I +R ++       ++ + + ++ +I  +
Sbjct:   280 VTPAGGFLRYGVVRSTFVMLSGSIPGTPKRPIVMRWAIRPPEWYLKLGVRKPEITYISLA 339

Query:   299 SKFG 288
             SK G
Sbjct:   340 SKQG 343


 >gi|548769|sp|Q06844|RL3_HALHA  50S RIBOSOMAL PROTEIN L3P >gi|629397|pir||S43420
            ribosomal protein L3.eR - Halobacterium halobium
            >gi|11383705|pir||T43816 ribosomal protein L3.eR [similarity] -
            Halobacterium salinarum >gi|2425176|dbj|BAA22270.1| (AB006961)
            ribosomal protein L3 [Halobacterium halobium]
            Length = 330

Frame -3 hits (HSPs):                                            _________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                      |                      |    | 330
                       0                    150                    300
__________________

Annotated Domains:
   DOMO                 DM00797: RIBOSOMALPROTEINL3              1..101
   DOMO                 DM00364: RIBOSOMALPROTEINL3              103..304
   PFAM                 Ribosomal_L3: Ribosomal protein L3       45..304
   PRODOM               PD003396: RL3(16) RL3A(2) RL3B(2)        4..162
   PRODOM               PD001374: RL3(36) RK3(4) RM03(3)         185..303
   PRODOM               PD105225: RL3_HALHA                      305..328
   PROSITE              RIBOSOMAL_L3: Ribosomal protein L3 signa 188..211
__________________


  Minus Strand HSPs:

 Score = 92 (32.4 bits), Expect = 0.65, P = 0.48
 Identities = 20/61 (32%), Positives = 34/61 (55%), Frame = -3

Query:   470 TPMGGFPHYGVVKDDFIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKF 291
             +P GGFP+YG V   + +VKG   GP++R++  R  +    S     E++  ++ T+S  
Sbjct:   272 SPDGGFPNYGEVDGPYTLVKGSVPGPEQRLVRFRLGVRPNESPRLDPEVR--YVSTASNQ 329

Query:   290 G 288
             G
Sbjct:   330 G 330


 >gi|132955|sp|P20279|RL3_HALMA  50S RIBOSOMAL PROTEIN L3P (HMAL3) (HL1)
            >gi|71097|pir||R5HS3L ribosomal protein L3 [similarity] -
            Haloarcula marismortui >gi|148801|gb|AAA86859.1| (J05222) ribosomal
            protein L3 [Haloarcula marismortui]
            Length = 338

Frame -3 hits (HSPs):                                     ________________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                      |                     |     | 338
                       0                    150                   300
__________________

Annotated Domains:
   DOMO                 DM00797: RIBOSOMALPROTEINL3              1..90
   DOMO                 DM00364: RIBOSOMALPROTEINL3              92..312
   PFAM                 Ribosomal_L3: Ribosomal protein L3       45..312
   PRODOM               PD003396: RL3(16) RL3A(2) RL3B(2)        4..167
   PRODOM               PD208378: RL3_HALMA                      169..190
   PRODOM               PD001374: RL3(36) RK3(4) RM03(3)         192..311
   PRODOM               PD105224: RL3_HALMA                      313..336
   PROSITE              RIBOSOMAL_L3: Ribosomal protein L3 signa 195..218
__________________


  Minus Strand HSPs:

 Score = 82 (28.9 bits), Expect = 9.5, P = 1.0
 Identities = 28/108 (25%), Positives = 49/108 (45%), Frame = -3

Query:   599 QGW----SGMDTTTELELNKKVXQAWQS-WERNLTLXXRSL-IGPRKTLTPMGGFPHYGV 438
             QGW      +       +   V Q  Q+ + +   L  R + IG     T  GGF +YG 
Sbjct:   231 QGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGDEPTVDGGFVNYGE 290

Query:   437 VKDDFIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFG 288
             V   + +VKG   GP KR++  R ++ +   +  L+  +++++   S  G
Sbjct:   291 VDGPYTLVKGSVPGPDKRLVPFRPAV-RPNDQPRLDP-EVRYVSNESNQG 338


 >gi|10120921|pdb|1FFK|B  Chain B, Crystal Structure Of The Large Ribosomal
            Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution
            Length = 338

Frame -3 hits (HSPs):                                    _________________
                        __________________________________________________
Database sequence:     |                      |                     |     | 338
                       0                    150                   300

  Minus Strand HSPs:

 Score = 82 (28.9 bits), Expect = 9.5, P = 1.0
 Identities = 27/109 (24%), Positives = 48/109 (44%), Frame = -3

Query:   599 QGW----SGMDTTTELELNKKVXQAWQS-WERNLTLXXRSL-IGPRKTLTPMGGFPHYGV 438
             QGW      +       +   V Q  Q+ + +   L  R + IG     T  GGF +YG 
Sbjct:   230 QGWRRRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGDEPTVDGGFVNYGE 289

Query:   437 VKDDFIMVKGCCVGPKKRVITLRQSLLKQTSRVALEEIKLKFIDTSSKFG 288
             V   + +VKG   GP KR++   +  ++   +  L+  +++++   S  G
Sbjct:   290 VDGPYTLVKGSVPGPDKRLVPFFRPAVRPNDQPRLDP-EVRYVSNESNQG 338


Parameters:
  filter=none
  matrix=BLOSUM62
  V=50
  B=50
  E=10
  gi
  H=1
  sort_by_pvalue
  echofilter

  ctxfactor=5.97

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   Std.    0   BLOSUM62                                 0.318   0.135   0.401  
   +3      0   BLOSUM62        0.318   0.135   0.401    0.352   0.157   0.513  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +2      0   BLOSUM62        0.318   0.135   0.401    0.359   0.159   0.585  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +1      0   BLOSUM62        0.318   0.135   0.401    0.346   0.152   0.530  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -1      0   BLOSUM62        0.318   0.135   0.401    0.348   0.154   0.527  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -2      0   BLOSUM62        0.318   0.135   0.401    0.344   0.153   0.581  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -3      0   BLOSUM62        0.318   0.135   0.401    0.340   0.149   0.490  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +3      0      207       204       10.  77 3  12 22  0.096   35
                                                    31  0.11    38
   +2      0      208       206       10.  77 3  12 22  0.097   35
                                                    31  0.11    38
   +1      0      208       205       10.  77 3  12 22  0.097   35
                                                    31  0.11    38
   -1      0      208       205       10.  77 3  12 22  0.097   35
                                                    31  0.11    38
   -2      0      208       206       10.  77 3  12 22  0.097   35
                                                    31  0.11    38
   -3      0      207       204       10.  77 3  12 22  0.096   35
                                                    31  0.11    38


Statistics:

  Database:  /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
    Title:  nr
    Release date:  unknown
    Posted date:  4:06 PM CST Feb 28, 2001
    Format:  BLAST
  # of letters in database:  197,782,623
  # of sequences in database:  625,274
  # of database sequences satisfying E:  45
  No. of states in DFA:  599 (59 KB)
  Total size of DFA:  233 KB (256 KB)
  Time to generate neighborhood:  0.01u 0.01s 0.02t  Elapsed: 00:00:00
  No. of threads or processors used:  6
  Search cpu time:  200.93u 1.12s 202.05t  Elapsed: 00:00:35
  Total cpu time:  200.98u 1.18s 202.16t  Elapsed: 00:00:35
  Start:  Wed Oct  3 10:40:35 2001   End:  Wed Oct  3 10:41:10 2001


Annotated Domains Database:   March 14, 2000 

Release Date:  March 14, 2000