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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs2312581          
refSNP ID: rs2312581
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:100/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:C/T
Ancestral Allele:Not available
Clinical Association:unknown
HGVS Names
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss3260862 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs2312581 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss3260862TSC-CSHL|TSC1348096fwd/BC/Tctacggccccctctggtctctggctacggcccctctggcctctggctgcggccccctctg09/20/0110/10/03100Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs2312581|allelePos=501|totalLen=984|taxid=9606|snpclass=1|alleles='C/T'|mol=Genomic|build=100
 ACCTATTTTG CAAGAGTATT ACTGGTATTG TTTTGAAAAA GAATTGGCTT GGATTCAAAG
 GGCTGTACTC TATCCATGTT ATAAGCAACT CACAAGTATG TTTGTTGATT CTAGACTTGG
 TTACCTCCTA TAGTAGCTGT GATGCTCAGC CCAAAAATTC AAGAGAGATA AACAACAGCA
 ACAACAATAT TCCTTTTGTC CACCATCTTC ATTACATACC GAGGTCCCCA TTCCACCAGA
 ACTCTGTTCT GATTAGGATT TTCCCATCTC CAAAGTGCCC AGGCATTTGT GGAGGAGAAT
 CAGTCCTCAG CCACCAGCCC ACACAGCTTG CTCCCGAGGT GTCCACAGGG CCCCTCCCTC
 CTGTAAGTGG ACCACCAGCA TCTTCAGAAA CACTGTCAGT CCCGTCCTTC CAGAGGTTCT
 GTGCAACCAG CATCCTCTGG TCTCTGGCTA CGGCTCCCTC TGATCTCTGG CTACGGCCCC
 CTCTGGTCTC TGGCTACGGC
 Y
 CCCTCTGGCC TCTGGCTGCG GCCCCCTCTG GTCTCTGGCT GCGGCTCCCT CTGGTCTCTG
 GCTGCATCTC TAGCAGAAAT TCTGAGTAAC AGGAGCCAAA AGTCAGTTTT GGTCTCAGTA
 CTGGTCCCTC CCTTGCTTCT GCAAGATCTT CCTAATTTGC CCCAAATTCT CATAAGCTCT
 CAGCAGGGAG GATGGGTCAT ACACACCACT TTACCTTAAA CTCTCCCACA CACTTACTTT
 CTTGACACGA ATTATTAAGC CTGCTCCTTG ATCATATGGG TGAATGGATA AGGGGAAATT
 GTGGGAGGAA AAAGGAATGA GTCATAAATC AATATTGTAA AACATCATTT TGCTGTATGT
 GTAAAATACA CTGATGAAAA AGGAGAGAAA GCAAAATTGT TCCCACACAG GGACAATCAT
 CACCACTGCA GTGGAGCATC CTTTCACAGG TGAGATGAGG AAAAAATTAT CAGTAAATCT
 TGC

  GeneView back to top
GeneView: no link established by analysis of contig annotation
GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs2312581 maps exactly once on NCBI human chromosome 7
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
7NW_001839090.1398035146723151minusAalt_assembly_8HuRefHuRefview500
7NW_923762.1382723147463698minusAalt_assembly_1CeleraCeleraview500
7NT_079596.252280438152244870minusAalt_assembly_2CRA_TCAGchr7v2CRA_TCAGchr7v2view500
7NT_007914.1413493252152548169minusAref_assemblyreferencereferenceview500

  NCBI Resource Links back to top
Submitter-Referenced
dbSNP Blast Analysis
GenBank HTGS Finished:GenBank HTGS Draft:
AC079809.4 NC_000007.12 AF145206.1

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .