BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= SMu1767
(254 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24380293|ref|NP_722248.1| hypothetical protein SMU.1945 ... 473 e-132
gi|81096754|ref|ZP_00875086.1| conserved hypothetical prote... 227 4e-58
gi|146318801|ref|YP_001198513.1| SPX domain-containing prot... 225 1e-57
gi|146321010|ref|YP_001200721.1| SPX domain-containing prot... 223 6e-57
gi|125717666|ref|YP_001034799.1| SPX domain-like protein, p... 210 6e-53
gi|157074515|gb|ABV09198.1| conserved hypothetical protein ... 169 1e-40
gi|125719116|ref|YP_001036249.1| SPX domain-like protein, p... 164 6e-39
gi|89893962|ref|YP_517449.1| hypothetical protein DSY1216 [... 135 2e-30
gi|153814041|ref|ZP_01966709.1| hypothetical protein RUMTOR... 124 4e-27
gi|157075662|gb|ABV10345.1| conserved hypothetical protein ... 105 3e-21
gi|125972762|ref|YP_001036672.1| hypothetical protein Cthe_... 104 5e-21
gi|150389769|ref|YP_001319818.1| hypothetical protein Amet_... 99 3e-19
gi|157075873|gb|ABV10556.1| conserved hypothetical protein ... 95 4e-18
gi|20091046|ref|NP_617121.1| hypothetical protein MA2205 [M... 89 3e-16
gi|150388149|ref|YP_001318198.1| hypothetical protein Amet_... 84 1e-14
gi|42522397|ref|NP_967777.1| hypothetical protein Bd0821 [B... 73 2e-11
gi|118468894|ref|YP_890155.1| hypothetical protein MSMEG_59... 58 4e-07
gi|19551308|ref|NP_599310.1| hypothetical protein NCgl0057 ... 54 6e-06
gi|145294119|ref|YP_001136940.1| hypothetical protein cgR_0... 54 7e-06
>gi|24380293|ref|NP_722248.1| hypothetical protein SMU.1945 [Streptococcus mutans UA159]
gi|24378306|gb|AAN59554.1|AE015018_8 hypothetical protein SMU_1945 [Streptococcus mutans UA159]
Length = 254
Score = 473 bits (1216), Expect = e-132, Method: Composition-based stats.
Identities = 254/254 (100%), Positives = 254/254 (100%)
Query: 1 MLNETIQKEFQRKEIKYLIEADTFEQLQKEFKDYLTPDRFTHSSITNIYFDNPDFQLIKD 60
MLNETIQKEFQRKEIKYLIEADTFEQLQKEFKDYLTPDRFTHSSITNIYFDNPDFQLIKD
Sbjct: 1 MLNETIQKEFQRKEIKYLIEADTFEQLQKEFKDYLTPDRFTHSSITNIYFDNPDFQLIKD 60
Query: 61 SINHRHASEKIRMRTYDPKPTQKSQAFLEIKKKEYQGEQEIGYKYRLTSTPLSLCNYVQQ 120
SINHRHASEKIRMRTYDPKPTQKSQAFLEIKKKEYQGEQEIGYKYRLTSTPLSLCNYVQQ
Sbjct: 61 SINHRHASEKIRMRTYDPKPTQKSQAFLEIKKKEYQGEQEIGYKYRLTSTPLSLCNYVQQ 120
Query: 121 GIIDNNIKQDDRANHELAILRERYKKLVPKMFIHYERFSLRGIENPKLRVTFDRNVIYRH 180
GIIDNNIKQDDRANHELAILRERYKKLVPKMFIHYERFSLRGIENPKLRVTFDRNVIYRH
Sbjct: 121 GIIDNNIKQDDRANHELAILRERYKKLVPKMFIHYERFSLRGIENPKLRVTFDRNVIYRH 180
Query: 181 ENVNLTSGFNGYPLLKNNQIVMEIKVKNGLPAWMEKIFHKHQLIPQSFSKYTTAYLKAYG 240
ENVNLTSGFNGYPLLKNNQIVMEIKVKNGLPAWMEKIFHKHQLIPQSFSKYTTAYLKAYG
Sbjct: 181 ENVNLTSGFNGYPLLKNNQIVMEIKVKNGLPAWMEKIFHKHQLIPQSFSKYTTAYLKAYG 240
Query: 241 LTPEDIREEPTSIA 254
LTPEDIREEPTSIA
Sbjct: 241 LTPEDIREEPTSIA 254
>gi|81096754|ref|ZP_00875086.1| conserved hypothetical protein [Streptococcus suis 89/1591]
gi|80977185|gb|EAP40736.1| conserved hypothetical protein [Streptococcus suis 89/1591]
Length = 247
Score = 227 bits (579), Expect = 4e-58, Method: Composition-based stats.
Identities = 121/248 (48%), Positives = 173/248 (69%), Gaps = 5/248 (2%)
Query: 1 MLNETIQKEFQRKEIKYLIEADTFEQLQKEFKDYLTPDRFTHSSITNIYFDNPDFQLIKD 60
M +QK+F+RKE KY+++ TFE L+KE + Y+ D F S+ITNIYFDN DF +I+D
Sbjct: 1 MKTRIVQKQFKRKETKYIVDKKTFELLEKELRQYMMADEFATSTITNIYFDNEDFDMIQD 60
Query: 61 SINHRHASEKIRMRTYDPKPTQKSQAFLEIKKKEYQGEQEIGYKYRLTSTPLSLCNYVQQ 120
S+ ++ EKIRMR YD P++ SQAFLEIKKK E +IGYKYRLTS P+S+ NY++
Sbjct: 61 SLAKKNGREKIRMRVYDAIPSESSQAFLEIKKK----ENKIGYKYRLTSNPVSVANYIEN 116
Query: 121 GIIDNNIKQDDRANHELAILRERYKKLVPKMFIHYERFSLRGIENPKLRVTFDRNVIYRH 180
G+ID+ IK DD+ N EL +LRERY + PKM+I+Y+R S +GIE+ K+R+T D+N++YR
Sbjct: 117 GVIDSTIK-DDKVNSELEMLRERYGTIKPKMYIYYDRVSYKGIEDKKVRLTIDKNLLYRD 175
Query: 181 ENVNLTSGFNGYPLLKNNQIVMEIKVKNGLPAWMEKIFHKHQLIPQSFSKYTTAYLKAYG 240
+V+ G G LL +++ME+KV P W+ + K+Q+ QSFSKY AY A+
Sbjct: 176 YDVDAMEGKFGKNLLDPTKVIMEVKVPEERPDWLVALLEKYQIEKQSFSKYGNAYKLAHN 235
Query: 241 LTPEDIRE 248
+T E++ +
Sbjct: 236 ITGEEVSQ 243
>gi|146318801|ref|YP_001198513.1| SPX domain-containing protein involved in vacuolar polyphosphate
accumulation [Streptococcus suis 05ZYH33]
gi|145689607|gb|ABP90113.1| SPX domain-containing protein involved in vacuolar polyphosphate
accumulation [Streptococcus suis 05ZYH33]
Length = 247
Score = 225 bits (574), Expect = 1e-57, Method: Composition-based stats.
Identities = 120/248 (48%), Positives = 172/248 (69%), Gaps = 5/248 (2%)
Query: 1 MLNETIQKEFQRKEIKYLIEADTFEQLQKEFKDYLTPDRFTHSSITNIYFDNPDFQLIKD 60
M +QK+F+RKE KY+++ TFE L+KE + Y+ D F S+ITNIYFDN DF +I+D
Sbjct: 1 MKTRIVQKQFKRKETKYIVDKKTFELLEKELRQYMMADEFATSTITNIYFDNEDFDMIQD 60
Query: 61 SINHRHASEKIRMRTYDPKPTQKSQAFLEIKKKEYQGEQEIGYKYRLTSTPLSLCNYVQQ 120
S+ ++ EKIRMR YD P++ SQAFLEIKKK E +IGYKYRLTS P+S+ NY++
Sbjct: 61 SLAKKNGREKIRMRVYDATPSESSQAFLEIKKK----ENKIGYKYRLTSNPVSVANYIEN 116
Query: 121 GIIDNNIKQDDRANHELAILRERYKKLVPKMFIHYERFSLRGIENPKLRVTFDRNVIYRH 180
G+ID+ IK DD+ EL +LRERY + PKM+I+Y+R S +GIE+ K+R+T D+N++YR
Sbjct: 117 GVIDSTIK-DDKVTSELEMLRERYGTIKPKMYIYYDRVSYKGIEDKKVRLTIDKNLLYRD 175
Query: 181 ENVNLTSGFNGYPLLKNNQIVMEIKVKNGLPAWMEKIFHKHQLIPQSFSKYTTAYLKAYG 240
+V+ G G LL +++ME+KV P W+ + K+Q+ QSFSKY AY A+
Sbjct: 176 YDVDAMEGKFGKNLLDPTKVIMEVKVPEERPDWLVALLEKYQIEKQSFSKYGNAYKLAHN 235
Query: 241 LTPEDIRE 248
+T E++ +
Sbjct: 236 ITGEEVSK 243
>gi|146321010|ref|YP_001200721.1| SPX domain-containing protein involved in vacuolar polyphosphate
accumulation [Streptococcus suis 98HAH33]
gi|145691816|gb|ABP92321.1| SPX domain-containing protein involved in vacuolar polyphosphate
accumulation [Streptococcus suis 98HAH33]
Length = 247
Score = 223 bits (569), Expect = 6e-57, Method: Composition-based stats.
Identities = 119/248 (47%), Positives = 171/248 (68%), Gaps = 5/248 (2%)
Query: 1 MLNETIQKEFQRKEIKYLIEADTFEQLQKEFKDYLTPDRFTHSSITNIYFDNPDFQLIKD 60
M +QK+F+RKE KY+++ TFE L+KE + Y+ D F S+ITNIYFDN DF +I+D
Sbjct: 1 MKTRIVQKQFKRKETKYIVDKKTFELLEKELRQYMMADEFATSTITNIYFDNEDFDMIQD 60
Query: 61 SINHRHASEKIRMRTYDPKPTQKSQAFLEIKKKEYQGEQEIGYKYRLTSTPLSLCNYVQQ 120
S+ ++ EKIRMR YD P++ SQAFLEIKKK E ++GYKYRLTS P+S+ NY++
Sbjct: 61 SLAKKNGREKIRMRVYDATPSESSQAFLEIKKK----ENKMGYKYRLTSNPVSVANYIEN 116
Query: 121 GIIDNNIKQDDRANHELAILRERYKKLVPKMFIHYERFSLRGIENPKLRVTFDRNVIYRH 180
G+ID IK DD+ EL +LRERY + PKM+I+Y+R S +GIE+ K+R+T D+N++YR
Sbjct: 117 GVIDPTIK-DDKVTSELEMLRERYGTIKPKMYIYYDRVSYKGIEDKKVRLTIDKNLLYRD 175
Query: 181 ENVNLTSGFNGYPLLKNNQIVMEIKVKNGLPAWMEKIFHKHQLIPQSFSKYTTAYLKAYG 240
+V+ G G LL +++ME+KV P W+ + K+Q+ QSFSKY AY A+
Sbjct: 176 YDVDAMEGKFGKNLLDPTKVIMEVKVPEERPDWLVALLEKYQIEKQSFSKYGNAYKLAHN 235
Query: 241 LTPEDIRE 248
+T E++ +
Sbjct: 236 ITGEEVSK 243
>gi|125717666|ref|YP_001034799.1| SPX domain-like protein, putative [Streptococcus sanguinis SK36]
gi|125497583|gb|ABN44249.1| SPX domain-like protein, putative [Streptococcus sanguinis SK36]
Length = 243
Score = 210 bits (535), Expect = 6e-53, Method: Composition-based stats.
Identities = 113/237 (47%), Positives = 156/237 (65%), Gaps = 5/237 (2%)
Query: 1 MLNETIQKEFQRKEIKYLIEADTFEQLQKEFKDYLTPDRFTHSSITNIYFDNPDFQLIKD 60
M + IQ FQR E KY+++ +L+ + + YLT D + S+I+N+YFDN +FQ+I+D
Sbjct: 1 MKQKQIQTNFQRIETKYILDRAMLARLEADMRPYLTADDYATSTISNVYFDNDEFQMIQD 60
Query: 61 SINHRHASEKIRMRTYDPKPTQKSQAFLEIKKKEYQGEQEIGYKYRLTSTPLSLCNYVQQ 120
SI + EK+RMRTY +P SQ FLEIKKK E+G+KYRL S PLS+ NY+
Sbjct: 61 SIARKGGREKMRMRTYAEQPNDDSQVFLEIKKKR----DEVGFKYRLVSNPLSVTNYIVN 116
Query: 121 GIIDNNIKQDDRANHELAILRERYKKLVPKMFIHYERFSLRGIENPKLRVTFDRNVIYRH 180
G+ D+ I DDR E+ L+ERY L PKM I Y+R+S+RG+E+ K+RVT D N+ YR
Sbjct: 117 GVADHTI-SDDRVKAEVEQLQERYIDLKPKMVISYDRYSMRGLEDKKVRVTVDSNIRYRD 175
Query: 181 ENVNLTSGFNGYPLLKNNQIVMEIKVKNGLPAWMEKIFHKHQLIPQSFSKYTTAYLK 237
+ +L SG G PLL +++++MEIKV P W+ I +K+ L QSFSKY AYLK
Sbjct: 176 YDADLASGRYGLPLLDDDKVIMEIKVPGQYPQWLAGILNKYGLEDQSFSKYGNAYLK 232
>gi|157074515|gb|ABV09198.1| conserved hypothetical protein [Streptococcus gordonii str. Challis
substr. CH1]
Length = 245
Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats.
Identities = 92/237 (38%), Positives = 145/237 (61%), Gaps = 7/237 (2%)
Query: 1 MLNETIQKEFQRKEIKYLIEADTFEQLQKEFKDYLTPDRFTHSSITNIYFDNPDFQLIKD 60
M +T + +FQR E KY+I + L EF++++ D +S+I+N+Y+D P FQ+I++
Sbjct: 1 MAKKTFKDKFQRFETKYVISKEVLANLLTEFEEHMVEDDHAYSTISNLYYDTPTFQMIRE 60
Query: 61 SINHRHASEKIRMRTYDPKPTQKSQAFLEIKKKEYQGEQEIGYKYRLTSTPLSLCNYVQQ 120
S+ + EK+R+RTYD P + SQ FLEIKKK ++I YK R+++ L+ Y+
Sbjct: 61 SLEKPYFKEKLRVRTYDEHPAEDSQVFLEIKKKV----RKIVYKRRISTDLLAAEAYLAG 116
Query: 121 GIIDNNIKQDDRANHELAILRERYKKLVPKMFIHYERFSLRGIENPKLRVTFDRNVIYRH 180
+ D + E+ L RY+K+ P M+I+Y R+S++GIE+P +R+T D ++ YR
Sbjct: 117 ---NRGQTDDSQICEEIDWLMARYQKVQPMMYIYYNRYSMKGIEDPNVRITIDYDLTYRS 173
Query: 181 ENVNLTSGFNGYPLLKNNQIVMEIKVKNGLPAWMEKIFHKHQLIPQSFSKYTTAYLK 237
E ++L G +G LL ++MEIKV P W+ +I HQ+ P+SFSKY AY K
Sbjct: 174 EALSLLDGKHGDKLLPEGYVIMEIKVPGAYPLWLSEILGHHQVFPKSFSKYGVAYKK 230
>gi|125719116|ref|YP_001036249.1| SPX domain-like protein, putative [Streptococcus sanguinis SK36]
gi|125499033|gb|ABN45699.1| SPX domain-like protein, putative [Streptococcus sanguinis SK36]
Length = 237
Score = 164 bits (414), Expect = 6e-39, Method: Composition-based stats.
Identities = 92/238 (38%), Positives = 143/238 (60%), Gaps = 7/238 (2%)
Query: 1 MLNETIQKEFQRKEIKYLIEADTFEQLQKEFKDYLTPDRFTHSSITNIYFDNPDFQLIKD 60
M + Q FQR E KY+I +T L EF+ YL D +S+I N+Y+D P +QLI++
Sbjct: 1 MAEKIFQHHFQRFETKYIISKETLLDLLLEFEGYLVEDERAYSTINNLYYDTPSYQLIRE 60
Query: 61 SINHRHASEKIRMRTYDPKPTQKSQAFLEIKKKEYQGEQEIGYKYRLTSTPLSLCNYVQQ 120
S+ + EK+R+RTY PT+ SQ FLEIKKK + + K RL + L+ Y+
Sbjct: 61 SLENPCFDEKVRLRTYQEHPTEDSQVFLEIKKKT----ENLVTKRRLAADLLTAEAYLDG 116
Query: 121 GIIDNNIKQDDRANHELAILRERYKKLVPKMFIHYERFSLRGIENPKLRVTFDRNVIYRH 180
D + D + + E+A L + + + P M+I Y R+S++GIE+ ++R+TFD ++ YR
Sbjct: 117 ---DYSQLTDLQIDKEMAWLTQHFGHIQPMMYIGYNRYSMKGIEDERIRITFDHDLTYRP 173
Query: 181 ENVNLTSGFNGYPLLKNNQIVMEIKVKNGLPAWMEKIFHKHQLIPQSFSKYTTAYLKA 238
+++L +G +G LL N ++ME+K+ P W+ +I ++QL P SFSKY AY KA
Sbjct: 174 YDLSLLAGRHGDHLLPANHVIMEVKIPEACPLWLSEIMDRYQLSPSSFSKYGFAYKKA 231
>gi|89893962|ref|YP_517449.1| hypothetical protein DSY1216 [Desulfitobacterium hafniense Y51]
gi|109646474|ref|ZP_01370378.1| conserved hypothetical protein [Desulfitobacterium hafniense DCB-2]
gi|89333410|dbj|BAE83005.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|109641720|gb|EAT51274.1| conserved hypothetical protein [Desulfitobacterium hafniense DCB-2]
Length = 242
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 83/234 (35%), Positives = 127/234 (54%), Gaps = 8/234 (3%)
Query: 5 TIQKEFQRKEIKYLIEADTFEQLQKEFKDYLTPDRFTHSSITNIYFDNPDFQLIKDSINH 64
T Q F+R E KY++ + + L K + D+F S I IYFD PD+ LI S+
Sbjct: 3 TYQSVFKRYEKKYMLNEEQYRHLLKRAAGKVKEDKFKQSRINTIYFDTPDYHLISASLEK 62
Query: 65 RHASEKIRMRTYDPKPTQKSQAFLEIKKKEYQGEQEIGYKYRLTSTPLSLCNYVQQGIID 124
EK+R+R+Y P Q F+E+KKK +QG + YK R T +SL V+
Sbjct: 63 PLYKEKLRLRSYG-TPHGHDQVFVELKKK-FQG---VVYKRR---TVMSLEEAVEYLYHR 114
Query: 125 NNIKQDDRANHELAILRERYKKLVPKMFIHYERFSLRGIENPKLRVTFDRNVIYRHENVN 184
+ + E+ + Y ++ P M+I YER +L GIE+P LR+TFD+++++R + ++
Sbjct: 115 KPARNASQITQEIDWFLKFYGEIGPAMYISYERLALSGIEDPGLRITFDQDILWRQDELD 174
Query: 185 LTSGFNGYPLLKNNQIVMEIKVKNGLPAWMEKIFHKHQLIPQSFSKYTTAYLKA 238
L+ G LL Q +MEIK+ +P W+ I + + P SFSKY AYL +
Sbjct: 175 LSMAPWGRSLLAPGQRLMEIKIAGAMPLWLAHILDELAIYPSSFSKYGKAYLTS 228
>gi|153814041|ref|ZP_01966709.1| hypothetical protein RUMTOR_00249 [Ruminococcus torques ATCC 27756]
gi|145848437|gb|EDK25355.1| hypothetical protein RUMTOR_00249 [Ruminococcus torques ATCC 27756]
Length = 239
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 82/239 (34%), Positives = 124/239 (51%), Gaps = 28/239 (11%)
Query: 7 QKEFQRKEIKYLIEADTFEQLQKEFKDYLTPDRFTHSSITNIYFDNPDFQLIKDSINHRH 66
Q F+R E+KYL+ E++ K ++ D + + I NIYFD +F+LI+ S+
Sbjct: 4 QMTFKRYELKYLLNKKEKEEILLAMKPHMKLDDYGRTVIRNIYFDTENFRLIRRSLEKPV 63
Query: 67 ASEKIRMRTYDPKPTQKSQ-AFLEIK---------KKEYQGEQEIGYKYRLTSTPLSLCN 116
EK+R+R+Y KP Q + F+EIK ++ E+ + +R T PL +C+
Sbjct: 64 YKEKLRIRSY--KPVQITDPVFVEIKKKYKSVVYKRRLLLPEKTVMESFR-TGEPLPVCS 120
Query: 117 YVQQGIIDNNIKQDDRANHELAILRERYKKLVPKMFIHYERFSLRGIENPKLRVTFDRNV 176
+ E+ RE YK L P +F+ YER + ++ RVTFD N+
Sbjct: 121 QI---------------GDEIQYFREYYKNLQPSVFLSYEREAFYSLDGSDFRVTFDENI 165
Query: 177 IYRHENVNLTSGFNGYPLLKNNQIVMEIKVKNGLPAWMEKIFHKHQLIPQSFSKYTTAY 235
+YR +++L S G+PLL Q +MEIK G+P WM + KH L SFSKY +AY
Sbjct: 166 LYRRNDISLGSEIYGHPLLGKQQTLMEIKTSGGIPLWMSETLTKHHLYKTSFSKYGSAY 224
>gi|157075662|gb|ABV10345.1| conserved hypothetical protein [Streptococcus gordonii str. Challis
substr. CH1]
Length = 116
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 53/102 (51%), Positives = 72/102 (70%)
Query: 136 ELAILRERYKKLVPKMFIHYERFSLRGIENPKLRVTFDRNVIYRHENVNLTSGFNGYPLL 195
E+ L+ERY L PKM I Y+R+S++G+E+ K+RVT D N+ YR +V LTSG G+PLL
Sbjct: 4 EVEALQERYLDLKPKMVIGYDRYSMKGLEDKKVRVTVDSNIRYRDYDVELTSGRYGWPLL 63
Query: 196 KNNQIVMEIKVKNGLPAWMEKIFHKHQLIPQSFSKYTTAYLK 237
++ +++MEIKV P WM I +K LI QSFSKY AYL+
Sbjct: 64 EDGKVIMEIKVPGQYPQWMADILNKFGLIDQSFSKYGKAYLQ 105
>gi|125972762|ref|YP_001036672.1| hypothetical protein Cthe_0240 [Clostridium thermocellum ATCC
27405]
gi|125712987|gb|ABN51479.1| conserved hypothetical protein [Clostridium thermocellum ATCC
27405]
Length = 260
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 75/234 (32%), Positives = 122/234 (52%), Gaps = 12/234 (5%)
Query: 10 FQRKEIKYLIEADTFEQLQKEFKDYLTPDRF-----THSSITNIYFDNPDFQLIKDSINH 64
F R E KYL++ DT+E+++ +Y+ D + T+ +I NIY+D D QLI+ S++
Sbjct: 9 FNRYEKKYLMDNDTYEKIKDILAEYMELDEYNKVNNTYYTICNIYYDTQDNQLIRHSVSK 68
Query: 65 RHASEKIRMRTYDPKPTQKSQAFLEIKKKEYQGEQEIGYKYRLTSTPLSLCNYVQQGIID 124
EK+R+R+Y P+ ++ +LEIKKK + K R T + GI
Sbjct: 69 PRYKEKLRLRSYG-VPSLDAKVYLEIKKKV----NGLVNKRRTKLTLREAYEFAATGIKP 123
Query: 125 N-NIKQDDRANHELAILRERYKKLVPKMFIHYERFSLRGIENPKLRVTFDRNVIYRHENV 183
+ + +E+ + Y L PK+++ Y+R + GI N LR+TFD N+ R ++
Sbjct: 124 KYQSYMNKQVLNEIEYILSVYD-LEPKLYLAYDRIAYFGINNRDLRITFDTNIRSRRTDL 182
Query: 184 NLTSGFNGYPLLKNNQIVMEIKVKNGLPAWMEKIFHKHQLIPQSFSKYTTAYLK 237
L G G PLL +ME+K + + W+ ++ ++ L SFSKY T Y K
Sbjct: 183 RLELGDYGEPLLDEGVWLMEVKAEKSISVWLSRMLSENGLFKTSFSKYGTEYKK 236
>gi|150389769|ref|YP_001319818.1| hypothetical protein Amet_1996 [Alkaliphilus metalliredigens QYMF]
gi|149949631|gb|ABR48159.1| conserved hypothetical protein [Alkaliphilus metalliredigens QYMF]
Length = 262
Score = 98.6 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 74/233 (31%), Positives = 124/233 (53%), Gaps = 11/233 (4%)
Query: 10 FQRKEIKYLIEADTFEQLQKEFKDYLTPDRFTHS----SITNIYFDNPDFQLIKDSINHR 65
F R E KYL+ D++E+LQ++ Y+ D + + +I N+Y+D D LI+ S++
Sbjct: 6 FNRHENKYLMNRDSYEKLQEKLLYYMDIDEYNKTNEMYTICNLYYDTKDDHLIRTSLSKP 65
Query: 66 HASEKIRMRTYDPKPTQKSQAFLEIKKKEYQGEQEIGYKYRLTSTPLSLCNYVQQGIIDN 125
EK+R+R Y P + + +LEIKKK Y + K R T ++ GI
Sbjct: 66 KYKEKLRIRAYG-VPKEDEEVYLEIKKKVYG----LVNKRRTTIKLEEAYDFATTGIKPE 120
Query: 126 NIK-QDDRANHELAILRERYKKLVPKMFIHYERFSLRGIENPKLRVTFDRNVIYRHENVN 184
+ + + +EL + + Y L PK+++ Y+R + N LR+TFD N+ R ++
Sbjct: 121 RKEYMNKQVMNELEYMFKVYD-LEPKLYLAYDRKAFFSKINRDLRITFDTNIRTRRYDLA 179
Query: 185 LTSGFNGYPLLKNNQIVMEIKVKNGLPAWMEKIFHKHQLIPQSFSKYTTAYLK 237
L SG G LL+ NQ +ME+K + +P W+ ++ ++++ SFSKY Y K
Sbjct: 180 LESGDYGESLLEENQWLMEVKAEKSIPIWLSRLLSENKIYKISFSKYGAEYKK 232
>gi|157075873|gb|ABV10556.1| conserved hypothetical protein [Streptococcus gordonii str. Challis
substr. CH1]
Length = 99
Score = 94.7 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 51/103 (49%), Positives = 67/103 (65%), Gaps = 4/103 (3%)
Query: 1 MLNETIQKEFQRKEIKYLIEADTFEQLQKEFKDYLTPDRFTHSSITNIYFDNPDFQLIKD 60
M + IQ FQR E KY+++ T E+L+ E YL D + S+ITNIYFDN DFQ+I+D
Sbjct: 1 MKQKKIQTNFQRIETKYILDRGTLERLEAEMAPYLIADDYARSTITNIYFDNDDFQMIQD 60
Query: 61 SINHRHASEKIRMRTYDPKPTQKSQAFLEIKKKEYQGEQEIGY 103
SI + EK+RMRTY +PT Q FLEIKKK +E+G+
Sbjct: 61 SIARKGGREKLRMRTYAEQPTDDCQVFLEIKKK----SEEVGF 99
>gi|20091046|ref|NP_617121.1| hypothetical protein MA2205 [Methanosarcina acetivorans C2A]
gi|19916138|gb|AAM05601.1| predicted protein [Methanosarcina acetivorans C2A]
Length = 288
Score = 88.6 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 71/237 (29%), Positives = 130/237 (54%), Gaps = 18/237 (7%)
Query: 8 KEFQRKEIKYLIEADTFEQLQKEFKDYLTPDRFTHSS----ITNIYFDNPDFQLIKDSIN 63
++F R E+KYL+ +L+++ K YL PD ++ +S IT++Y+D+PD Q + +N
Sbjct: 46 RKFNRFELKYLLTIKQANELKEQVKHYLIPDPYSWASGDYVITSLYYDSPDLQCYWEKVN 105
Query: 64 HRHASEKIRMRTYDPKP--TQKSQAFLEIKKKEYQGEQE--IGYKYRLTSTPLSLCNYVQ 119
+K+R+R Y+ K T+ S F+E+K++ + Q+ + KY+ L+LCN
Sbjct: 106 GIKFRKKLRIRFYETKEKLTEDSLIFVEVKQRYDKTIQKRRVEMKYK---DSLTLCN--- 159
Query: 120 QGIIDNNIKQDDRANHE-LAILRERYKKLVPKMFIHYERFSLRGIE-NPKLRVTFDRNVI 177
+ II + ++D E LA++ ER L P + Y R + G + + LR+TFD N+
Sbjct: 160 ERIIPEHNEEDTPVIEEILAMVEER--NLQPTLITSYFRHAFVGTDYDIGLRITFDSNIR 217
Query: 178 YRHENVNLTSGFNGYPLLKNNQIVMEIKVKNGLPAWMEKIFHKHQLIPQSFSKYTTA 234
YR +++L S G ++ +++++EIK +P W+ ++ ++ SKY T
Sbjct: 218 YRINDLDLNSKKPGRFIVSPDRVILEIKANERVPFWLTELIAQNNYRLVRISKYCTG 274
>gi|150388149|ref|YP_001318198.1| hypothetical protein Amet_0308 [Alkaliphilus metalliredigens QYMF]
gi|149948011|gb|ABR46539.1| conserved hypothetical protein [Alkaliphilus metalliredigens QYMF]
Length = 248
Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 64/243 (26%), Positives = 121/243 (49%), Gaps = 18/243 (7%)
Query: 6 IQKEFQRKEIKYLIEADTFEQLQKEFKDYLT------PDRFTHSSITNIYFDNPDFQLIK 59
IQ+ F R E KY+I + ++Q+ K K + PD F I ++Y+D+
Sbjct: 2 IQEVFNRYEFKYVINMNQYKQVLKALKGRIEVDGNGDPDGFY--KILSLYYDSDADTFFH 59
Query: 60 DSINHRHASEKIRMRTYDPKPTQKSQAFLEIKKKEYQGEQEIGYKYRLTSTPLSLCNYVQ 119
++I+ +K+R+R Y+ T + FLE+K+K + K R ++++
Sbjct: 60 ETIDGTTFRQKLRLRAYN-HVTMEDDVFLEVKQKH----NGVVNKRRTQMRVKDAYDFLK 114
Query: 120 QGIIDNNIKQDDRAN----HELAILRERYKKLVPKMFIHYERFSLRGIENPKLRVTFDRN 175
G+ ++Q +N +E+ L+E + L PK+ + Y+R + +GIE LRVTFD N
Sbjct: 115 LGVDQKALQQYASSNKQILNEIHFLKE-FHLLTPKILVSYDRQAFQGIEEKDLRVTFDTN 173
Query: 176 VIYRHENVNLTSGFNGYPLLKNNQIVMEIKVKNGLPAWMEKIFHKHQLIPQSFSKYTTAY 235
+ + ++ + G + ++ V+E+KV + +P W+ + ++ QS SKY Y
Sbjct: 174 LRKQEFDLRIDGANLGTQFMGSDVSVLEVKVNDRIPLWLSRTLNECGCYRQSVSKYCIGY 233
Query: 236 LKA 238
++
Sbjct: 234 QQS 236
>gi|42522397|ref|NP_967777.1| hypothetical protein Bd0821 [Bdellovibrio bacteriovorus HD100]
gi|39574929|emb|CAE78770.1| conserved hypothetical protein [Bdellovibrio bacteriovorus HD100]
Length = 261
Score = 72.8 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 65/256 (25%), Positives = 115/256 (44%), Gaps = 22/256 (8%)
Query: 10 FQRKEIKYLIEADTFEQLQKEFKDYLTPDRFT------HSSITNIYFDNPDFQLIKDSIN 63
+R E+KYLI A E + + + Y D ++ H +I ++Y D P L++ +
Sbjct: 10 LERYELKYLIPASLVEPISRFVETYCEMDYYSTVSPDKHYTINSLYLDTPSLYLLRFKES 69
Query: 64 HRHASEKIRMRTYDPKPTQKSQAFLEIKKKEYQGEQEIGYKYRLTSTPLSLCNYVQQGII 123
S +R+R+Y P K F EIK K +E K R + + ++ G I
Sbjct: 70 ANAYSFNMRIRSYGDNP--KPPYFFEIKYKL----REFVRKKRALVHDENWADILEWGAI 123
Query: 124 DNNIKQDDRANHELAILRERYKKLVPKMFIHYERFSLRGIENPKLRVTFDRNVIYRH--- 180
+I+ R N E + + + P + Y R + + + RVTFDR++ Y+
Sbjct: 124 PAHIQGSSRGNLEEFLRVKMTYNVGPVILTQYRRKAYLSVVDDYARVTFDRDLRYQEMNE 183
Query: 181 ----ENVNLTSGFNGYPLLKNN--QIVMEIKVKNGLPAWMEKIFHKHQLIPQSFSKYTTA 234
N +L S ++ + +V+E+K + +P WM + + +L SFSK+ +
Sbjct: 184 WCVRPNAHLLSHYDHPDSFEEPGCNVVLELKCEKKIPYWMVDLIRRFELESGSFSKFGNS 243
Query: 235 YLKAYGLTPEDIREEP 250
L +G+ PE + P
Sbjct: 244 MLTLFGV-PEVLSPGP 258
>gi|118468894|ref|YP_890155.1| hypothetical protein MSMEG_5929 [Mycobacterium smegmatis str. MC2
155]
gi|118170181|gb|ABK71077.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2
155]
Length = 299
Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 64/254 (25%), Positives = 109/254 (42%), Gaps = 20/254 (7%)
Query: 10 FQRKEIKYLIEADTFEQLQKEFKDYLTPDRFTHSS---ITNIYFDNPDFQLIKDSINHRH 66
F R EIKY ++ +L+ E ++ D ++ +T++Y+D PD + + I
Sbjct: 36 FNRYEIKYFVDELRVPELRDELAAHMDTDPYSPHGGYPVTSLYYDTPDLRFYWEKIEGLR 95
Query: 67 ASEKIRMRTYDPKP--TQKSQAFLEIKKKEYQGEQEIGYKYRLTSTPLSLCNYVQ----Q 120
K+RMR Y T + +EIK++ + Q+ R T P + VQ +
Sbjct: 96 FRRKLRMRLYGAPSACTDDTPVQIEIKQRVNRVTQK-----RRTELPYATA--VQWLDHR 148
Query: 121 GIIDNNIKQDDRANHELAILRERYKKLVPKMFIHYERFSLRGIE-NPKLRVTFDRNVIYR 179
ID + Q N E+ L E L P + Y R + G + + LRVT D V R
Sbjct: 149 KEIDCDASQKPFVN-EVTTLVENLD-LRPIVTTGYLREAFVGRDADLGLRVTIDHKVHGR 206
Query: 180 HENVNLTSGFNGYPLLKNNQIVMEIKVKNGLPAWMEKIFHKHQLIPQSFSKYTTAYLKAY 239
+ + SG ++ ++E+K +P W+ + + + SKY + ++A+
Sbjct: 207 DRDFHFASGAQNRFIIPPKLAIVEVKANERVPYWITDLLARVDMSVIRVSKYCQS-VQAF 265
Query: 240 GLTPEDIREEPTSI 253
GL P P I
Sbjct: 266 GLAPRSALGAPELI 279
>gi|19551308|ref|NP_599310.1| hypothetical protein NCgl0057 [Corynebacterium glutamicum ATCC
13032]
gi|62388953|ref|YP_224355.1| hypothetical protein cg0077 [Corynebacterium glutamicum ATCC 13032]
gi|21322822|dbj|BAB97451.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032]
gi|41324286|emb|CAF18626.1| Conserved HYPOTHETICAL PROTEIN [Corynebacterium glutamicum ATCC
13032]
Length = 280
Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 58/235 (24%), Positives = 102/235 (43%), Gaps = 14/235 (5%)
Query: 10 FQRKEIKYLIEADTFEQLQKEFKDYLTPDRFTHSS---ITNIYFDNPDFQLIKDSINHRH 66
F R EIKYLI L+++ ++ D + + ++YFD+ D + + I
Sbjct: 25 FNRFEIKYLITEQDVPALREQLATRMSTDPLSPPGGYRVESLYFDSADLRCYTEKIEGLK 84
Query: 67 ASEKIRMRTY-DPKPTQKSQAFLEIKKKEYQGEQ----EIGYKYRLT---STPLSLCNYV 118
K+R+RTY D T +S +EIK++ + Q ++ + Y L ST ++ V
Sbjct: 85 FRRKLRIRTYGDGVLTPESTVSVEIKQRVNKVTQKRRLDLPFIYALALGDSTGAAVGEQV 144
Query: 119 Q-QGIIDNNIKQDDRANHELAILRERYKKLVPKMFIHYERFSLRGIE-NPKLRVTFDRNV 176
+ +++ + + HE+A + Y+ L P Y R + G + RVT D V
Sbjct: 145 DVEKLLEISPENQHALIHEMASFAKNYR-LRPIATTKYHREAFVGADAEESSRVTIDHGV 203
Query: 177 IYRHENVNLTSGFNGYPLLKNNQIVMEIKVKNGLPAWMEKIFHKHQLIPQSFSKY 231
R + L P + V+EIK +P W+ + + ++ SKY
Sbjct: 204 SGRDRDFLLGQDLEDRPTVAQGLAVVEIKCDERVPFWLTDMTAQLEMSVIRMSKY 258
>gi|145294119|ref|YP_001136940.1| hypothetical protein cgR_0077 [Corynebacterium glutamicum R]
gi|140844039|dbj|BAF53038.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 280
Score = 54.3 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 58/235 (24%), Positives = 102/235 (43%), Gaps = 14/235 (5%)
Query: 10 FQRKEIKYLIEADTFEQLQKEFKDYLTPDRFTHSS---ITNIYFDNPDFQLIKDSINHRH 66
F R EIKYLI L+++ ++ D + + ++YFD+ D + + I
Sbjct: 25 FNRFEIKYLIPEQDVPALREQLATRMSTDPLSPPGGYRVESLYFDSADLRCYTEKIEGLK 84
Query: 67 ASEKIRMRTY-DPKPTQKSQAFLEIKKKEYQGEQ----EIGYKYRLT---STPLSLCNYV 118
K+R+RTY D T +S +EIK++ + Q ++ + Y L ST ++ V
Sbjct: 85 FRRKLRIRTYGDGVLTPESTVSVEIKQRVNKVTQKRRLDLPFIYALALGDSTGAAVGEQV 144
Query: 119 Q-QGIIDNNIKQDDRANHELAILRERYKKLVPKMFIHYERFSLRGIE-NPKLRVTFDRNV 176
+ +++ + + HE+A + Y+ L P Y R + G + RVT D V
Sbjct: 145 DVEKLLEISPENQHALIHEMASFAKNYR-LRPIATTKYHREAFVGADAEASSRVTIDHGV 203
Query: 177 IYRHENVNLTSGFNGYPLLKNNQIVMEIKVKNGLPAWMEKIFHKHQLIPQSFSKY 231
R + L P + V+EIK +P W+ + + ++ SKY
Sbjct: 204 SGRDRDFLLGQDLEDRPTVAQGLAVVEIKCDERVPFWLTDMTAQLEMSVIRMSKY 258
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.319 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 966,083,134
Number of Sequences: 5470121
Number of extensions: 40514320
Number of successful extensions: 101467
Number of sequences better than 1.0e-05: 21
Number of HSP's better than 0.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 101421
Number of HSP's gapped (non-prelim): 21
length of query: 254
length of database: 1,894,087,724
effective HSP length: 130
effective length of query: 124
effective length of database: 1,182,971,994
effective search space: 146688527256
effective search space used: 146688527256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)