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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs237436          
refSNP ID: rs237436
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:79/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:G/T
Ancestral Allele:G
Clinical Association:unknown
HGVS Names
NM_003567.2:c.1803-1377A>C
NT_032977.8:g.64010694T>G
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss2049957 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs237436 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss306166KWOK|OVLP-000621-346002fwd/BG/Tgagtttgagaccagcctgggcaacatgggcaaaccccatctctactaaaaatacaaaaat06/30/0010/10/0379Genomic97 %
ss717932SC_JCM|AC022939.2_27022rev/TA/Catttttgtatttttagtagagatggggtttgcccatgttgcccaggctggtctcaaactc07/27/0010/10/0385Genomicunknown
ss997109KWOK|OVLP-000804-52747rev/TA/Catttttgtatttttagtagagatggggtttgcccatgttgcccaggctggtctcaaactc09/02/0010/10/0386Genomic97 %
ss997983KWOK|OVLP-000804-62858fwd/BG/Tgagtttgagaccagcctgggcaacatgggcaaaccccatctctactaaaaatacaaaaat09/02/0010/10/0386Genomic97 %
ss2049957KWOK|OVLP-000925-476653rev/TA/Catttttgtatttttagtagagatggggtttgcccatgttgcccaggctggtctcaaactc10/06/0010/10/0387Genomic97 %
ss2050564KWOK|OVLP-000925-486276fwd/BG/Tgagtttgagaccagcctgggcaacatgggcaaaccccatctctactaaaaatacaaaaat10/06/0010/10/0387Genomic97 %
ss9866136BCM_SSAHASNP|chr1.NT_021979.15_364679fwd/BG/Tgagtttgagaccagcctgggcaacatgggcaaaccccatctctactaaaaatacaaaaat06/27/0310/10/03116Genomicunknown
ss11395022WI_SSAHASNP|chr1.NT_021979.15_364679fwd/BG/Tgagtttgagaccagcctgggcaacatgggcaaaccccatctctactaaaaatacaaaaat07/03/0310/10/03116Genomicunknown
ss13027744SC_SNP|NT_021979.15_364679fwd/BG/Tgagtttgagaccagcctgggcaacatgggcaaaccccatctctactaaaaatacaaaaat10/22/0310/31/03123Genomicunknown
ss19873166CSHL-HAPMAP|CSHL-HuFF-200402.chr1.NT_028050.13_2236597fwd/BG/Tgagtttgagaccagcctgggcaacatgggcaaaccccatctctactaaaaatacaaaaat02/21/0403/04/04120Genomicunknown
ss41103684ABI|hCV8935231fwd/BG/Tgagtttgagaccagcctgggcaacatgggcaaaccccatctctactaaaaatacaaaaat07/16/0507/17/05126Genomicunknown
ss84825929HGSV|Cor18517_SNV_20070510.chr1_93750796fwd/BG/Tgagtttgagaccagcctgggcaacatgggcaaaccccatctctactaaaaatacaaaaat12/06/0712/08/07130Genomicunknown
ss87631003BCMHGSC_JDW|JWB-0086793fwd/BG/Tgagtttgagaccagcctgggcaacatgggcaaaccccatctctactaaaaatacaaaaat02/26/0802/26/08129Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs237436|allelePos=366|totalLen=1178|taxid=9606|snpclass=1|alleles='G/T'|mol=Genomic|build=130
 GTGTTGGTCG GTCTCTTGCT CTCCCTGAGC AAAGGGCAGC AGGGATTCAT TGAGTGCTTA
 GCATCACTCA TTTCTCTAAT GTTTGTTAAA TAGGTAATGG GCTCTGCCTC CAAGTGTGTT
 TGCGTATATA TGCATGTATG GGGctcactt gcagtgtaag cttgggctgg tacctaactg
 ctccactcct caggttcttc atctgtaaaa tgggagcaag ggttgtgaga aggagagact
 gtgtataggt gtgaaaataa ttaaagtgag ccaggtctca ggcctgtaat cccagcactt
 tgggaggctg aggcaggcac aatgcttgag cccaggagtt tgagaccagc ctgggcaaca
 tgggc
 K
 aaaccccatc tctactaaaa atacaaaaat gagccaggca tggtggcaca tgcctgtagt
 cccagctact cgagtggctg aggaatgaga atcgcttgaa cccaggaggc agaggttgta
 gtgagcagat tgcgccactg cactccagcc tgggtaacta gagagactat ctcaaaacaa
 aaataataat aataattaaa gtgcctggca ctggcgggca cctaataaat agcagttgtt
 actAGAGTTG TCTCTGTACA TGTCTCTCCC TGTGTATCTT GGTCCAtttt ccctctttgt
 ctccatctct ttcctctttt ctccatttat ctccttctcc tGATTTGTCT TTCTCAATTA
 ATGAATCCAA ACATAGACCT AAAATAtatt tttattatta ttattattat tattattttt
 ttttttttga gacagggttt tgctctgttg cccaggctgg agtgcagtgg tgtgatcatg
 gctcactgca gccttgacct ccctggctca aaggatcctc ctgcctcagc ctcccacgta
 gctgggacca caggcatatg ccaccatgcc cagctaattt tcgtgttttt ttgtagaaac
 agggttttgc catgttgccc agctggtctc gaattcctgg gctcaagtga tccacctgcc
 ttggcctccc aaagtgctgg gattacaggc atgagccacc acgcccagct GTTATCTGAT
 ACATTTTTGG AAGAGTTTTC TTATCCATTT GCAAAATGTT AACATTGACA GAACATTTTA
 GATGTTGCTT TTAACTATAA ACTCACTTCC CA

  GeneView back to top
GeneView via analysis of contig annotation: BCAR3 breast cancer anti-estrogen resistance 3
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_032977->NM_003567
svfunction
HuRefNW_001838589->NM_003567
svfunction
CeleraNW_921795->NM_003567
svfunction
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
referenceNT_032977->NM_003567->NP_00355864010694reverseintron
HuRefNW_001838589->NM_003567->NP_00355810069758forwardintron
CeleraNW_921795->NM_003567->NP_00355810099732reverseintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs237436 maps exactly once on NCBI human chromosome 1
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
1NW_001838589.21006975892160251minusAalt_assembly_8HuRefHuRefview365
1NW_921795.11009973292292838plusGalt_assembly_1CeleraCeleraview365
1NT_032977.86401069493811363plusTref_assemblyreferencereferenceview365

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_028050 AL109613 AL109613.11 AL359820.4 AL359820.8
dbSNP Blast Analysis
GenBank HTGS Finished:
AL109613.11 NC_000001.9

  Population Diversity back to top

Sample AscertainmentGenotypesAlleles
ss#PopulationIndividual
Group		Chrom.
Sample Cnt.
SourceHWPG
T
ss2049957CEPH 184AF 1.000

SummaryAverage
Het.+/- std err:		Individual
Count		Founders
Count		Individual
Overlap		Genotype
Conflict
0000

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
byClusterwith2hit
DoubleHit found by:  BCM_SSAHASNP
UNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .