Copyright © 2003, The American Society for Plant
Biologists Resemblance and Dissemblance of Arabidopsis Type II Peroxiredoxins:
Similar Sequences for Divergent Gene Expression, Protein Localization, and
Activity1 * Corresponding author; e-mail
ymeyer/at/univ-perp.fr;
fax 33–4–68–66–84–99.
Received February 22, 2003; Revised March 14, 2003; Accepted April 28, 2003. This article has been cited by other articles in PMC. | ||||
Abstract The Arabidopsis type II peroxiredoxin (PRXII) family is composed of six
different genes, five of which are expressed. On the basis of the nucleotide
and protein sequences, we were able to define three subgroups among the PRXII
family. The first subgroup is composed of AtPRXII-B, -C, and -D, which are
highly similar and localized in the cytosol. AtPRXII-B is
ubiquitously expressed. More striking is the specific expression of
AtPRXII-C and AtPRXII-D localized in
pollen. The second subgroup comprises the mitochondrial AtPRXII-F, the
corresponding gene of which is expressed constitutively. We show that
AtPRXII-E, belonging to the last subgroup, is expressed
mostly in reproductive tissues and that its product is addressed to the
plastid. By in vitro enzymatic experiments, we demonstrate that glutaredoxin
is the electron donor of recombinant AtPRXII-B for peroxidase reaction, but
the donors of AtPRXII-E and AtPRXII-F have still to be identified. | ||||
Plants generate reactive oxygen species (ROS) such as the superoxide anion,
hydrogen peroxide, or the hydroxyl radical as by-products of electron
transport chains in chloroplast and mitochondria, photorespiration in the
peroxisome, and cell wall oxidases and peroxidases
(Dat et al., 2000). ROS are
necessary for plants, because they participate in signal transduction
(Karpinski et al., 1999;
Orozco-Cardenas et al., 2001;
Mullineaux and Karpinski,
2002) and play a role in response to pathogen attack
(Wojtaszek, 1997;
Bolwell, 1999;
Dat et al., 2000). However,
biotic or abiotic stress may promote ROS generation and break the redox
balance of the cell. To protect macromolecules such as lipids, proteins, or
nucleic acids from damage caused by ROS, cells contain a large variety of
antioxidant enzymes that include catalase, superoxide dismutase, ascorbate-
and glutathione-dependent peroxidases, and the more recently described
peroxiredoxin (PRX) family. The PRX family was first described as alkyl
hydroperoxide reductase C (Jacobson et
al., 1989) and later as thiol-specific antioxidant in Brewer's
yeast (Saccharomyces cerevisiae) and Escherichia coli (Chae et al., 1994). In
contrast to other peroxidases, PRX enzymes do not have redox cofactors such as
metal or prosthetic groups. They reduce hydrogen peroxides and alkyl peroxides
to water and alcohols, respectively, by using reducing equivalents. These
reducers are derived specifically from thiol-containing donor molecules such
as thioredoxin (TRX; Chae et al.,
1994; Kwon et al.,
1994; Kang et al.,
1998), glutaredoxin (GRX; Rouhier et al.,
2001,
2002), and the flavin
containing AhpF, a subunit of the Salmonella typhimurium alkyl
hydroperoxide reductase highly similar to TRX reductase
(Jacobson et al., 1989;
Tartaglia et al., 1990).
Members of the PRX family have now been identified in a wide variety of
organisms ranging from archae and eubacteria to eukaryotes, including
vertebrates and plants. All PRX proteins contain a conserved Cys in their N-terminal part and some of them possess a second conserved Cys residue. The strictly conserved Cys residue is oxidized during the mechanism of ROS scavenging (Schroder and Ponting, 1998; Seo et al., 2000). To obtain regenerated PRX, the oxidized Cys residue forms a disulfide bridge, which is next reduced by disulfide oxidoreductases. On the basis of the number and position of conserved Cys residues, the PRX proteins are classified in several sub-families (Choi et al., 1999). Phylogenetic analysis using a wide range of PRX amino acid sequences and including related sequences of unidentified function (Verdoucq et al., 1999), allows the division of PRX into four main groups. The 2Cys-PRX group corresponds to PRX containing two conserved Cys residues, the 1Cys-PRX group includes PRX with only one conserved Cys residue, and the type II PRX family is composed of another type of PRX with two conserved Cys residues. In addition, a fourth group of PRX, called type Q PRX, has also been described and contains homologs of the E. coli bacterioferritin-associated protein (Jeong et al., 2000; Kong et al., 2000). In plants, the four types of PRX have been described (Baier and Dietz, 1996; Horling et al., 2002; Konig et al., 2002). Two Arabidopsis genes encode chloroplastic 2Cys-PRX (Dietz et al., 2002). All plant homologs present a transit peptide suggesting a chloroplastic localization of the mature proteins, and several publications have reported the characterization and involvement of 2Cys-PRX from barley (Hordeum vulgare) and spinach (Spinacia oleracea; Baier and Dietz, 1996, 1997, 1999), Chinese cabbage (Brassica campestris L. subsp. pekinensis; Cheong et al., 1999), or Arabidopsis (Baier et al., 2000; Konig et al., 2002) in the protection of chloroplasts against ROS. 1Cys-PRX has also been studied in diverse plant species such as rice (Oryza sativa), Arabidopsis, buckwheat (Fagopyrum esculentum), or barley (Stacy et al., 1996, 1999; Haslekas et al., 1998; Lee et al., 2000; Lewis et al., 2000) and are described as being related to seed dormancy (Lewis et al., 2000) or at least to antioxidant activity in seeds (Lee et al., 2000). A type Q PRX described in Sedum lineare is also proposed to act in vivo as an antioxidant (Kong et al., 2000). One Arabidopsis gene encodes a PRX-Q protein homologous to the S. lineare PRX-Q (Horling et al., 2002). In this paper, we describe the most recently discovered PRXII family. In Arabidopsis, it is composed of six members that define three different subgroups. Using RT-PCR and plant reporter gene studies, we present the differential expression patterns of AtPRXII. We also report the detection of AtPRXII proteins in different organs and in three distinct cellular compartments. We discuss the in vitro activity characteristics of AtPRXII and demonstrate that at least one of them is reduced by the GRX system. | ||||
RESULTS Characterization of Arabidopsis Type II PRX Gene and Protein
Sequences Searching for PRX homologs encoded by the nuclear genome of Arabidopsis, we
found 10 potential open reading frames (ORFs). To build a phylogenetic tree,
we used in addition all PRX sequences available for human, Brewer's yeast, and
plants (Fig. 1). On this
phylogenetic tree, built using the DARWIN program
(Gonnet et al., 1992), the
sequences are grouped in four different families, as previously shown
(Verdoucq et al., 1999;
Horling et al., 2002). We
choose in this paper to use the names proposed by Horling et al.
(2002) for the four PRX
families. All of the human and yeast sequences are perfectly associated within
the four groups defined by the Arabidopsis members
(Fig. 1). A search for
additional sequences in the National Center for Biotechnology Information
non-redundant database and in The Arabidopsis Information Resource database
using less stringent criteria showed that PRXs present low but significant
similarity with glutathione peroxidases (GPX) in a limited region of the
sequences. This exhaustive search allowed us to detect all potential members
of the Arabidopsis PRX family and to define members of each group.Homologs of the Brewer's yeast AHP1 protein, the last discovered yeast PRX (Jeong et al., 1999; Lee et al., 1999; Verdoucq et al., 1999), form the type II PRX group, which is the focus of this study. It includes human and plant sequences. At least in plants, the type II PRX group is more complex than the three other groups. The Arabidopsis genome contains six different genes belonging to this group (Fig. 1). AtPRXII-F was detected during the analysis of the Arabidopsis mitochondrial proteome (Kruft et al., 2001). The ORF encodes 199 amino acids that includes an N-terminal extension of 28 residues (Kruft et al., 2001). AtPRXII-E has an ORF encoding 234 amino acids with an N-terminal extension of 70 amino acids that could code for a transit peptide predicted to address the protein to mitochondria or plastids depending on the prediction programs used. AtPRXII-B, -C, and -D are closely related and will be analyzed in detail in this study. Each gene has an ORF of 162 amino acids, which is exactly the same length as the PRXII described in poplar (Populus spp.; Rouhier et al., 2001) and B. rapa (Choi et al., 1999). AtPRXII-B and AtPRXII-C are present as a tandem repeat. AtPRXII-A is on the same BAC F12P19 at a distance of approximately 10 kb, whereas AtPRXII-D is also on chromosome I, but further away. AtPRXII-E and AtPRXII-F are located on chromosome III. The coding sequences of AtPRXII-A, -B, -C, and -D are interrupted by two introns at the same positions, whereas AtPRXII-E has no intron. The AtPRXII-F coding sequence is interrupted by three introns at positions unrelated to those of AtPRXII-A, -B, -C, and -D. Thus, based on the exon/intron structure, the AtPRXII family can be divided into three subgroups. Due to an error in the Arabidopsis genome annotation, AtPRXII-D was previously described as a pseudogene (Horling et al., 2002), but the isolation of a partial cDNA in our laboratory allowed us to correct the annotation. AtPRXII-A shares homologies to these sequences, but the predicted protein is far larger (560 amino acids) due to a C-terminal domain homologous to numerous Arabidopsis sequences without known function. An alignment of the deduced amino acid sequences of these five Arabidopsis type II PRXs is shown in Figure 2. Each of these type II PRXs have the characteristic feature of all of the PRXII sequences analyzed so far. They contain one strictly conserved Cys residue (Cys-51 in AtPRXII-B, -C, and -D) with the surrounding consensus sequence: P[G/L][A/D]FT[P/F][T/V]C[S/P/T] (Rouhier et al., 2001). In addition, all of them possess a second Cys residue separated from the first one by the same number of residues. It is not known if the AtPRXII-A protein is correctly predicted because no EST or complete cDNA are available at the present time. Therefore, this protein is not further analyzed in this study. AtPRXII-B, -C, and -D are highly similar, showing between 93% to 99% identity. They share about 60% identity with the amino acid sequence of AtPRXII-E without the N-terminal extension, whereas they only share 50% similarity with the predicted mature form of AtPRXII-F. Thus, the amino acid sequence of AtPRXII allowed us to define three subgroups corresponding to those already defined by the exon/intron structures of the genes. We were able to find rice homologs of each sub-group, suggesting that this organization is common to all higher plants (Fig. 1). AtPRXII-B and -E Present in Vitro Peroxidase Activities But Are
Reduced in Different Ways To test biochemical activities of AtPRXII, we produced His-tagged
recombinant proteins using the bacterial-expressing vector pET16b. Because the
amino acid sequences of AtPRXII-B, -C, and -D are so similar, we decided to
restrict our biochemical study to AtPRXII-B. AtPRXII-E was cloned as a
truncated form, Δ70AtPRXII-E, lacking the 70 N-terminal amino acids
corresponding to the putative transit peptide.To test the in vitro peroxidase activity of these different AtPRXII, we used the classical assay of plasmid DNA protection against ROS generated by the Fenton reaction induced by this metal-catalyzed system. Dithiothreitol (DTT) and FeCl3 were incubated with 1 μg of plasmid DNA at room temperature in the presence or absence of 20 μm of recombinant proteins. After 5 h of incubation, the DNA mixed without PRX was completely degraded, as was DNA incubated with bovine serum albumin (BSA). In contrast, DNA incubated with AtPRXII-B or Δ70AtPRXII-E was efficiently protected (Fig. 3). Nevertheless, we observed a difference in the pattern of DNA protection between AtPRXII-B and Δ70AtPRXII-E, because the plasmid super-coiled form is much less abundant using Δ70AtPRXII-E than with AtPRXII-B. These results are in good agreement with the DTT-dependent H2O2-reducing activities obtained by Horling et al. (2003). They showed that AtPRXII-E has a DTT-dependent activity three times less efficient than that obtained for AtPRXII-B. Thus, a low protection of DNA by Δ70AtPRXII-E could be attributed to its lower peroxidase activity, as compared with that of AtPRXII-B. The reaction mechanism of 2Cys-PRX includes homodimer formation. In contrast, the activity of type II PRXs analyzed so far is associated with monomers. We tested the ability of the recombinant AtPRXII to form dimers. Recombinant proteins were analyzed directly after purification under nonreducing conditions or were incubated under reducing conditions with 5% (v/v) β-mercaptoethanol and then submitted to SDS-PAGE (Fig. 4). Under nonreducing conditions, a dimer of about 44 kD and a monomeric form of about 22 kD were observed with His-tagged AtPRXII-B. The dimeric form completely disappeared in the presence of β-mercaptoethanol. ΔAtPRXII-E protein also formed a dimer in nonreducing conditions. Thus the recombinant Arabidopsis type II PRXs are able to form disulfide bonds between two molecules. Nevertheless, the amount of dimers is not increased when PRXIIs are incubated with H2O2 at 0.5 to 50 mm (data not shown). In addition, no dimers were detected in crude plant extracts under nonreducing conditions by western blot using sera raised against AtPRXII-B or AtPRXII-E (data not shown). Although we were not able to demonstrate the existence of these dimers in planta, we cannot exclude that this property of the AtPRXII proteins to form dimers may not play a regulating role under certain conditions. To further investigate the thiol dependence of the type II AtPRX peroxidase activity, we followed the oxidation of NADPH by the TRX or GRX system. The TRX system consists of Arabidopsis TRX reductase (Jacquot et al., 1994) and Arabidopsis TRX h2 (GenBank accession no. S58123). With NADPH as the primary electron donor, it reduces insulin efficiently (data not shown) and acts as an efficient reducer of AHP1, the PRXII of Brewer's yeast (Verdoucq et al., 1999). We were not able to detect any peroxidase activity in the presence of this TRX system for either AtPRXII-B or Δ70AtPRXII-E. However, in the presence of a GRX system, composed of a commercial glutathione reductase associated with reduced glutathione (GSH) and a recombinant Arabidopsis GRX, the initial rate of NADPH oxidation increased as a function of the AtPRXII-B concentration (Fig. 5B). The turnover number of the peroxidase activity of AtPRXII-B was estimated to be 2.86 10-2 s-1 under the conditions of the experiment. The reduction system without GSH did not show any activity. The absence of either GRX or PRX led to a residual NADPH consumption (Fig. 5A), which is most probably due to GSH oxidation by hydrogen peroxide. No significant activity was observed with the recombinant truncated Δ70AtPRXII-E. These results suggest that GRX is the main electron donor to AtPRXII-B and that the AtPRXII-E enzyme has a thiol-dependent activity but its electron donor has still to be identified. AtPRXII-E Is Chloroplastic, Whereas AtPRXII-B, -C, and -D Are
Cytosolic Rabbit antibodies raised against AtPRXII-B and Δ70AtPRXII-E
recombinant proteins were produced, and their specificity was tested by
immunodetection against different quantities of recombinant AtPRXII-B and
Δ70AtPRXII-E. The serum raised against AtPRXII-B can recognize at least
5 ng of recombinant AtPRXII-B but does not show any signal with up to 80 ng of
Δ70AtPRXII-E (data not shown). Thus the AtPRXII-B serum does not
recognize AtPRXII-E, but we assume it can detect AtPRXII-C and -D as well as
AtPRXII-B. This assumption is sustained by the high similarity of these three
PRX and by the fact that the serum produced by Horling et al.
(2002), raised against the
recombinant AtPRXII-C, recognized recombinant AtPRXII-C and AtPRXII-B
(Horling et al., 2002). The
serum raised against Δ70AtPRXII-E shows a lower specificity: It
recognized at least 5 ng of the recombinant Δ70AtPRXII-E but
cross-reacts with 20 ng of AtPRXII-B.To get insights into the subcellular localizations of the AtPRXII, we performed immunoblots against subcellular fractions of Arabidopsis protoplasts. The purity of each subcellular fraction was tested using antibodies raised against proteins specifically located in the different organelles: the large subunit of the light-harvesting complex II from C. reinhardtii for the chloroplast, TRX h (AtTRXh3) for the cytosol, pyruvate dehydrogenase for the mitochondrion, and catalase for the peroxisome. No contamination was detected in chloroplast and cytosol fractions (Fig. 6, lines C and E). However, a very weak contamination by chloroplasts in the mitochondrial fraction can be observed (Fig. 6, line D). Anti-AtPRXII-E serum reveals a 19-kD band in total protoplast and chloroplast fractions (Fig. 6, line B). A very faint signal is also observed in the mitochondrial fraction, which is most probably due to the weak contamination of this fraction by chloroplasts. The chloroplast localization of AtPRXII-E was confirmed by import experiments of the radiolabeled protein into purified organelles. No import could be detected into potato (Solanum tuberosum) mitochondria, whereas processing of the major 29-kD protein, obtained by in vitro coupled transcription/translation, was observed after its incubation under light with pea chloroplasts (data not shown). A signal of 19 kD resistant to added proteinase K appeared at the same position as the Arabidopsis protein immunodetected in chloroplast extracts. Thus we concluded that AtPRXII-E is only located in the chloroplasts. Using the serum raised against AtPRXII-B, signals were obtained in protoplast and cytosol fractions but not in those of mitochondria or chloroplasts (Fig. 6, line A). As shown using the serum raised against catalase (Fig. 6, line F), peroxisomes copurify with the mitochondrial fraction, whereas soluble peroxisomal proteins contaminate the cytosolic fraction. Because no signal is detected by the AtPRXII-B serum in the mitochondrial fraction, we conclude that AtPRXII-B and probably AtPRXII-C and -D are cytosolic proteins and are not located in the peroxisomes. AtPRXII Have Different mRNA Accumulation Patterns Expression of AtPRXII-B,-C,-D,
-E, and -F in plant tissues was analyzed by RT-PCR. For each
gene, two primers were designed for transcript amplification. Amplified
products were cloned and sequenced to check for the specificity of
amplification, except for AtPRXII-F. This demonstrated that
each couple of primers is highly specific.The expression of each gene was analyzed by reverse transcription followed by radioactive PCR (Fig. 7). This allowed us to amplify the sequence of interest and the control gene, actin 2 (GenBank accession no. U41998), which is supposed to be uniformly expressed in all tissues, in the same tube. Because the Act2 gene is not expressed in dry seeds, we used primers designed to amplify EM1 mRNA (Carles et al., 2002) as the internal control for seeds. Signals were then quantified using a phosphorimager, and the intensities were related to the intensity of the actin signal, enabling us to compare levels of expression between the different tissues (Fig. 7B). Because of the different efficiency of each couple of primers, it is not possible to compare the level of expression of the different genes. Nevertheless, the number of ESTs in the database gives some estimation of the relative expression, at least in the tissues used for the construction of the cDNA libraries: AtPRXII-A, no EST; AtPRXII-B, 30 ESTs; AtPRXII-C, 10 ESTs; AtPRXII-D, no EST; AtPRXII-E, 3 ESTs; and AtPRXII-F, 14 ESTs. AtPRXII-B mRNA is detected in all tissues but mostly in reproductive tissues such as buds, flowers, siliques, and seeds. AtPRXII-B is also strongly expressed in callus and cell suspensions. Concerning the AtPRXII-C transcripts, the strongest signals were obtained with buds and flowers, whereas a very faint signal is detected in all other tissues, except in roots. AtPRXII-D mRNA is present exclusively in buds and flowers. A signal corresponding to the AtPRXII-E transcripts was obtained with all tissues, but with a high predominance in buds, siliques, seeds, cell suspensions, and plantlets. AtPRXII-F transcripts are detected in all tissues without any significant difference of intensity (Fig. 7). Thus, the genes encoding PRXs have distinct tissue expression patterns. To get more insight into the expression patterns of AtPRXII genes, we analyzed their promoter activities using transgenic Arabidopsis plants carrying AtPRXII-B to -E promoter-β-glucuronidase (GUS) reporter gene fusion. 5′-Upstream regions of 1.465, 1.139, 1.141, and 1.831 kb from the gene initiation codon of AtPRXII-B, -C, -D, and -E, respectively, were used to generate transcriptional fusions with the GUS reporter gene. The constructs were introduced into wild-type Arabidopsis plants via Agrobacterium tumefaciens-mediated transformation. Independent primary transformants were obtained, and the T2 or T3 generations were analyzed for GUS expression. Five lines of T2 generation for AtPRXII-B, -C, and -E, respectively, and three homozygous lines of T3 generation for AtPRXII-D were analyzed. Concerning the expression of AtPRXII-C and -D, similar GUS staining for the different reporter lines, consistent with the RT-PCR data, was observed: AtPRXII-C is almost exclusively expressed in flower buds, and the GUS staining was restricted to mature pollen (Fig. 8C). In pAtPRXII-D::GUS plants, GUS activity is detected in mature pollen but also in germinating pollen, pollinic tubes, and fertilized ovules (Fig. 8A). To verify whether the staining observed in fertilized ovules in siliques was from pollinic tubes or from maternal material, we did reciprocal fertilizations using pollen of wild-type plants to fecundate transgenic pAtPRXII-D::GUS pistils, or pollen from transgenic pAtPRXII-D::GUS flowers to fertilize wild-type pistils. GUS staining in ovules was observed exclusively when fertilizing wild-type pistils with pAtPRXII-D::GUS pollen, leading to the conclusion that only the male material expressed the GUS gene. Concerning pAtPRXII-B::GUS plants, we did not obtain consistent results with the different lines. One line exhibited blue staining in vascular tissues of stem and roots, whereas another line was stained in blue exclusively in young anthers. Some lines were not stained at all. No line gave a staining pattern coherent with the RT-PCR data. Most probably the 1,465 bp of the promoter did not contain all of the information responsible for in vivo expression of AtPRXII-B gene. Looking at pAtPRXII-E::GUS plants, we observed blue staining in stamen of young flowers, the embryo sac of young seeds, and the albumen of older seeds from green or yellow siliques (Fig. 8B). These results are consistent with the expression pattern we obtained by RT-PCR. However, we did not observe blue staining in 10-d-germinating plantlets, whereas transcripts were detected by RT-PCR (Fig. 7). This may be due to a difference of stability of the AtPRXII-E transcripts in plantlets. The AtPRXII-E is weakly expressed, but the corresponding stable transcripts accumulate to a high level and thus are detectable by RT-PCR. Protein Accumulation in Different Organs Because AtPRXII-B, -C, and -D differ only by 0.06 kD from one another
(Table I), we used
two-dimensional electrophoresis to distinguish AtPRXII-B from the AtPRXII-C
and -D proteins, using their predicted pI difference of 0.15. The mature form
of AtPRXII-E predicted by PSORT
(http://psort.nib-b.ac.jp;
Nakai, 2000) is about 0.15 kD
smaller than the three first AtPRXII and could then be distinguished by its
size as well as by its pI which is 0.15 point more acidic than AtPRXII-B and
0.30 point from AtPRXII-C and -D (Table
I). Thus in addition to one-dimensional western blots, we have
used two-dimensional immunoblotting to detect the presence of the different
PRXII in Arabidopsis plant organs.We first performed a one-dimensional western blot from an SDS-PAGE loaded with exactly 10 μg of proteins from the different tissues. Using the serum raised against AtPRXII-B, a stronger signal was observed with extracts from buds, flowers, and seeds than with proteins from other tissues (Fig. 9B). Probing the same membrane with the serum raised against AtPRXII-E (Fig. 9D), we observed the presence of AtPRXII-E in an approximately equal quantity in each tissue that was tested, except for roots where a weaker signal was seen. The serum also reacts with proteins of higher Mr that fit exactly the signals showed by anti-AtPRXII-B serum with the same membrane (Fig. 9D). With all tissue extracts, one or several signals were obtained on two-dimensional gels with the serum raised against AtPRXII-B (Fig. 9A). These different signals may correspond to the AtPRXII-B, -C, and -D proteins or to modified isoforms of AtPRXII-B, -C and/or -D. Using serum raised against AtPRXII-E, two types of signal were obtained with two-dimensional blots (Fig. 9C): strong signals most probably corresponding to the mature AtPRXII-E, and weaker signals (indicated in Fig. 9C by a B) present at exactly the same position as those obtained with serum raised against AtPRXII-B and then corresponding to AtPRXII-B to -D. AtPRXII-E signals were observed with all tissues, leading to the conclusion that AtPRXII-E as well as AtPRXII-B and/or AtPRXII-C and/or AtPRXII-D are present in all plant tissues. The position of the AtPRXII-E spots, compared with the ones of AtPRXII-B to -D, coincides with the molecular mass and pI of the predicted mature AtPRXII-E (Table I; Fig. 9). | ||||
DISCUSSION Higher Plants Present Three Subgroups of Type II PRX Genes All eukaryotic PRXs can be classified in four groups, on the basis of their
sequences, as shown in the tree of Figure
1. This classification fits well with our knowledge on the
mechanisms of peroxide reduction which are different in each group. Among the
PRXs, the type II PRXs are less studied, probably because the peroxidase
activity of this family of proteins was only recently identified in yeast
(Jeong et al., 1999;
Lee et al., 1999;
Verdoucq et al., 1999),
Arabidopsis (Verdoucq et al.,
1999; Horling et al.,
2002,
2003), poplar
(Rouhier et al., 2001), and
Chinese cabbage (Choi et al.,
1999). At least in plants, this type is also more complex,
composed of several different members. The six Arabidopsis PRXII proteins are
not grouped but are distributed into three subclasses corresponding to the
AtPRXII-B, -C, and -D group and AtPRXII-F and AtPRXII-E forms. The genes
encoding these subclasses show different exon/intron structures. At least one
rice sequence is clearly associated with each Arabidopsis PRXII subtype,
suggesting that the three subtypes are present in all higher plants.AtPRXII Accumulate in Different Plant Organs and in Different
Subcellular Compartments We have analyzed in detail the expression pattern and protein accumulation
of three cytosolic PRXIIs (AtPRXII-B, -C, and -D). AtPRXII-B is expressed in all tissues, and the protein also accumulates in all tissues.
This pattern may well correspond to the defense function that is frequently
associated with PRXs. Recently, Horling et al.
(2003) showed an absence of
induction of AtPRXII-B expression by high or low light but
an induction of this gene in the presence of butyl hydroperoxide. They suggest
that the protein may function in protecting the plasma membrane.More striking is the almost exclusive expression in pollen of the two AtPRXII-C and -D genes. To our knowledge, it is the first report of PRX expression localized in flowers. Until now plant PRXs were mainly characterized in leaves and seeds (Baier and Dietz, 1996; Haslekas et al., 1998; Lewis et al., 2000; Rouhier et al., 2001; Horling et al., 2002, 2003). This particular expression pattern is reminiscent of the TRX regulation of the S-locus receptor kinase, implicated in cauliflower (Brassica oleracea) pollen auto-incompatibility (Cabrillac et al., 2001), and suggests a developmental function for these two proteins. In addition, this expression pattern may mean that the PRXII-C and/or -D proteins are implicated in the protection of pollen components. Pollen grains are exposed to an increase of free radical production during desiccation (Van Bilsen and Hoekstra, 1993) and PRXs constitute one of the molecular antioxidants able to alleviate oxidative stress in dried tissues (Hoekstra et al., 2001). The gene encoding plastidial PRX AtPRXII-E is expressed constitutively but is overexpressed in anther tapetum and during seed formation, suggesting that the function of this protein is not limited to chloroplasts, but is also very active in other types of plastids. In particular, elaioplats are plastids present in anther tapetum and contain mainly globuli of neutral esters (Wu et al., 1997; Ting et al., 1998; Hernandez-Pinzon et al., 1999). AtPRXII-E could thus be involved in a protective mechanism preventing a high level of lipid peroxidation in elaioplasts. The gene coding for the mitochondrial PRX AtPRXII-F (Kruft et al., 2001) is ubiquitously expressed. The protein is probably implicated in the protection of mitochondria against ROS damage and may be reduced by the mitochondrial TRX system described by Laloi et al. (2001), as suggested by Horling et al. (2003). AtPRXIIs Are Reduced by Different Systems The cytosolic AtPRXII-B and -C, the plastidial AtPRXII-E, and mitochondrial
AtPRXII-F are able to scavenge ROS in the presence of DTT (Horling et al.,
2002,
2003; this paper). Looking for
a more physiological reducing system, we tested TRX and GRX systems, both from
Arabidopsis. AtPRXII-B is not reduced by the Arabidopsis TRX h2 system. In a
previous study (Verdoucq et al.,
1999), AtPRXII-B presented a weak TRX-dependent activity, using a
TRX from C. reinhardtii. This system was also proved to be able to
reduce a cytosolic poplar PRXII, but less efficiently than a GRX system
(Rouhier et al., 2001). We
cannot rule out that one of the eight cytosolic TRXs
(Meyer et al., 2002) could be
a physiological electron donor of AtPRXII-B. However, we showed that AtPRXII-B
is efficiently reduced in vitro by the Arabidopsis GRX 1 system, suggesting
that one of the numerous Arabidopsis GRXs is the natural electron donor of
cytosolic PRXII. AtPRXII-C and AtPRXII-D accumulate in pollen and pollinic
tubes, tissues where Arabidopsis TRX h4 is expressed
(Reichheld et al., 2002).
Therefore, AtTRXh4 is also a good candidate for the reduction of
AtPRXII-C and/or -D.The plastidial AtPRXII-E cannot be efficiently reduced by any of these systems. This is not surprising because, on the basis of the Arabidopsis genome, no gene was found to encode a GRX with a transit peptide. The lack of activity in the presence of the cytosolic TRX system is more surprising, because the substrate specificity of TRXs is rather low in vitro. For example, a C. reinhardtii cytosolic TRX was reported to be an excellent electron donor for a chloroplastic 2-Cys PRX from Arabidopsis (Goyer et al., 2002). Nevertheless, a systematic test with chloroplastic TRXs should be performed in the future. | ||||
MATERIALS AND METHODS Plant Materials and Growth Conditions Arabidopsis ecotype Columbia seeds were sterilized by incubating them in
70% (v/v) ethanol for 10 min and then sown on one-half-diluted Murashige and
Skoog medium supplemented with 1% (w/v) Glc, 0.5 g L-1 MES, and
0.8% (w/v) agar or directly in soil. Seeds were cold treated for 3 to 4 d at
4°C, then germinated and grown under continuous light at 22°C.
Arabidopsis cell suspensions were maintained in Murashige and Skoog medium
supplemented with 3% (w/v) Suc, 50 μg L-1 kinetin, and 500 μg
L-1 naphthaleneacetic acid and subcultured every 14 d. Calli were
grown for 1 month on the same medium solidified with 0.8% (w/v) agar.Plant Transformation and GUS Staining The AtPRXII-B promoter region was isolated from genomic
DNA (ecotype Columbia) by PCR walking
(Devic et al., 1997) using a
reverse primer to introduce a unique SpeI site just upstream from the
ATG codon. A fragment of 1.46 kb was isolated. Fragments of 1.14, 1.14, and
1.83 kb of the regions upstream from the ATG codon of
AtPRXII-C, -D, and -E, respectively, were
isolated by direct PCR on genomic DNA using primers to introduce unique
HindIII and SalI sites for AtPRXII-C,
XbaI and SalI sites for AtPRXII-D, and
SpeI and SalI sites for AtPRXII-E. The DNA
fragments were then digested by the corresponding enzymes and cloned into
pGPTV-HYG binary vector. The resulting plasmids were introduced into
Agrobacterium tumefaciens C18CIRifR. Arabidopsis were
transformed with agrobacteria by the floral dip method
(Clough and Bent, 1998).
T1, T2, and T3 seedlings were selected in
vitro on one-half-diluted Murashige and Skoog medium supplemented with 1%
(w/v) Glc, 0.5 g L-1 MES, 0.8% (w/v) agar, and 25 μg
mL-1 hygromycine under continuous light at 22°C. For the GUS
assay, plants were cultivated either in vitro under the same conditions or
grown in soil mixed with vermiculite in a greenhouse under continuous light at
22°C. GUS histochemical staining was performed according to Lagarde et al.
(1996).RNA Extraction and Radioactive Reverse Transcriptase PCR Total RNA was extracted from frozen cell suspensions, calli, and each plant
organ—siliques and seeds excepted—as described
(Kay et al., 1987). Total RNA
from siliques and seeds were extracted using the Invisorb Spin Plant-RNA Mini
Kit (Invitek, Berlin, Germany) and following the procedure provided by the
manufacturer. Five micrograms of total RNA were used for reverse transcription
using the Moloney murine leukemia virus reverse transcriptase as described by
the manufacturer's protocol (First Strand RT-PCR kit, ProSTAR, Stratagene, La
Jolla, CA). One-fiftieth of the reverse transcription product was used for
further PCR using in each reaction primers specific to distinct
AtPRXII cDNA and primers specific to the control gene EM1 for dry seed cDNA and Act2 for other tissue cDNA. PCR was performed
in the presence of 6.6 nm [α-32P]dCTP and 20
μm for the three other dNTPs. Fifteen cycles were performed to
amplify AtPRXII transcripts. One-third of the reaction was run on a
5% (w/v) acrylamide/bis-acrylamide gel. Radioactive amplifications were
visualized and quantified through PhosphorImager (Storm 640, Molecular
Dynamics, Sunnyvale, CA). The sequences of the primers used for RT-PCR
experiments are indicated in Table
II.As a control for genomic DNA contamination, PCR was carried out on RNA not treated by reverse transcriptase, with each couple of primers. No amplification was observed. Furthermore, different couples of primers we used are able to amplify genomic DNA leading to the production of DNA fragments of higher Mr (612, 1,390, 770, 1,010, and 1,503 bp for Act2, AtPRXII-B, AtPRXII-D, AtPRXII-E, and AtPRXII-F, respectively). But such an amplification was never observed. Recombinant Protein and Antibody Productions The AtPRXII-B ORF from the ATG codon to the stop codon,
and the AtPRXII-E ORF from the codon coding for the amino
acid A71 to the stop codon were amplified and cloned downstream from, and in
phase with, a sequence coding for His tag in the pET16b plasmid. The
construction with the incomplete reading frame of AtPRXII-E is called
Δ70AtPRXII-E.To overproduce AtPRXII in Escherichia coli, BL21(DE3) strains were cotransformed with pSBET (Schenk et al., 1995) and pET16b containing the AtPRXII constructs, and grown in 500 mL of liquid B medium up to A600 nm = 0.5, when production was induced by addition of 0.4 mm isopropyl-1-thio-β-d-galactopyranoside for 3 h at 37°C. Cells were then pelleted and stored at -80°C. Total proteins from bacteria were extracted using a hydraulic press (model 3968, Carver, Wabash, IN) and purified on a nickel affinity column as described by Verdoucq et al. (1999). The productions of antibodies from rabbit were done by Eurogentec using 400 μg of each purified AtPRXII-B and Δ70AtPRXII-E. Plant Protein Extraction, Electrophoresis, and Immunodetection For one-dimensional electrophoresis, proteins were extracted from different
frozen plant organs according to the protocol described by Carles et al.
(2002). Ten micrograms of plant
proteins was separated on a SDS-12.5% (w/v) polyacrylamide gel. For
two-dimensional electrophoresis, protein extractions were performed according
to the protocol previously described
(Grosset et al., 1990), with
the following modifications: After the homogenization of frozen tissues in 10
mL of 50% (w/v) phenol in Tris-HCl (0.1 m, pH 8) containing 5%
(v/v) 2-mercaptoethanol, the mixture was centrifuged for 20 min at 5,000 rpm.
The phenol phase was then extracted again with 1 volume of Tris-HCl (0.1
m pH 8) containing 5% (v/v) 2-mercaptoethanol and was separated by
centrifugation for 20 min at 5,000 rpm. Proteins from the phenolic phase were
then precipitated by five volumes of cold acetone during 2 h at -20°C. The
precipitate was collected by centrifugation, washed four times with acetone
(-20°C), and dried under reduced pressure. Analytical two-dimensional
electrophoresis were performed as described by Grosset et al.
(1990).Immunodetections were done as described by Mouaheb et al. (1998) with the following modifications: Wet membranes were incubated at room temperature for 1 h in Tris-buffered saline plus Tween 20 (TBS-T) buffer (20 mm Tris-HCl, 500 mm NaCl, and 0.05% [v/v] Tween 20, pH 7.6) containing 5% (w/v) lyophilized skimmed milk, washed once in 50 mL of TBS-T buffer one time for 15 min and twice for 5 min. The reaction with the first antibody was carried out for 2.5 h at room temperature in 20 mL of TBS-T buffer containing 1% (w/v) lyophilized skimmed milk and 20,000-fold diluted rabbit immunoserum directed against the different PRXs. The membranes were washed and incubated for 1 h at room temperature in 20 mL of TBS-T buffer containing 20,000-fold diluted goat anti-rabbit horseradish peroxidase conjugate (Bio-Rad Laboratories, Hercules, CA). Finally, antibodies were visualized with ECL+ Western Blotting detection reagent (Amersham Biosciences, Uppsala). Subcellular Fractionation and in Vitro Import Experiments Arabidopsis protoplasts were prepared from 3- to 4-d-old suspension cell
cultures as previously described (Sakamoto
et al., 2000). Typically, protoplasts obtained from 500 mL of
culture were resuspended in 50 mL of extraction buffer (400 mm Suc,
50 mm Tris-HCl pH 7.5, 3 mm EDTA, 0.1% [w/v] BSA, and 2
mm DTT) and disrupted by filtrations through nylon meshes. Cell
debris were eliminated by centrifugation for 5 min at 100g, and the
supernatant was recentrifuged for 10 min at 2,000g. The
chloroplast-enriched pellet was collected and purified as described
(Sakamoto et al., 2000), and
the supernatant was centrifuged at 16,000g for 15 min to pellet
mitochondria. The supernatant (cytosol) was stored for further analysis. The
mitochondrial pellets were purified on 18%–23%-40% (v/v) Percoll step
gradients. The mitochondria were collected at the 23% to 40% interface and
washed in the extraction buffer without BSA and DTT. All fractions were frozen
at -80°C before SDS-PAGE.Concerning in vitro import into isolated chloroplast and mitochondria, the precursor proteins were synthesized from the corresponding cDNA clones by coupled in vitro transcription/translation (TNT kit, Promega, Madison, WI) in the presence of [35S]Met. Chloroplasts were isolated from leaves of 10-d-old pea seedlings and import assays were carried out as described previously (Bruce et al., 1994). Mitochondria were isolated from cauliflower with a juice extractor as described (Fey et al., 1999). Import assays into mitochondria were carried out as described (Wischmann and Schuster, 1995). Enzymatic Activities Metal-catalyzed oxidation DNA cleavage protection assays were performed as
previously described (Klimowski et al.,
1997) with the following modifications. ROS were generated for 30
min at room temperature by incubation of 10 μm FeCl3 with 1 mm DTT. Reaction mixtures were incubated for 4.5 h at room
temperature with 20 μm proteins and 1 μg of pBluescript
plasmid in a final volume of 50 μL. BSA (Fraction V, Roche Diagnostics,
Mannheim, Germany) was used as a negative control. DNA degradation was checked
by electrophoresis on 1% (w/v) agarose gels.AtPRXII GRX-dependent or TRX-dependent peroxidase activity was assayed as follows: After 5 min of preincubation, the reaction was initiated by the addition of 1 mm H2O2 to 0.5 mL of 0.1 m potassium phosphate buffer at pH 7 containing 2 mm EDTA, 0.5 mm NADPH (Sigma-Aldrich), different concentrations of AtPRXII, and the GRX system composed of 0.5 unit of glutathione reductase (Roche Diagnostics), 0.5 mm GSH (Sigma-Aldrich), and 10 μm Arabidopsis GRX AtGRX1, or the TRX system composed of 10 μm Arabidopsis TRX AtTRXh2 and 0.2 μm Arabidopsis TRX reductase AtNTRB. The consumption of NADPH was followed spectrophotometrically at 340 nm at 22°C. The TRX insulin disulfide reduction assays were performed as described (Laloi et al., 2001). These experiments were done two to five times, and comparable results were obtained. | ||||
Acknowledgments We thank Dr. C. Laloi for the gift of recombinant NTRB, Dr. L. Verdoucq for pET-AtPRXII-B construct, Y. Chartier for technical help, Dr C. de Vitry for the gift of anti-light-harvesting complex II serum, and Dr. J.-P. Reichheld and Dr. R. Cooke for critical reading of the manuscript. | ||||
Notes 1C.B. was the recipient of a fellowship from the Centre National de la
Recherche Scientifique and from the Région Languedoc Roussillon.;
E.H.M. was the recipient of a fellowship from the French Ministère de
la Recherche et de la Technologie. | ||||
References
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