Index: src/java/org/apache/nutch/crawl/Crawl.java
===================================================================
--- src/java/org/apache/nutch/crawl/Crawl.java	(revision 320901)
+++ src/java/org/apache/nutch/crawl/Crawl.java	(working copy)
@@ -51,7 +51,7 @@
     JobConf conf = new JobConf(NutchConf.get());
     //conf.addConfResource("crawl-tool.xml");
 
-    File rootUrlFile = null;
+    File rootUrlDir = null;
     File dir = new File("crawl-" + getDate());
     int threads = conf.getInt("fetcher.threads.fetch", 10);
     int depth = 5;
@@ -71,7 +71,7 @@
         topN = Integer.parseInt(args[i+1]);
         i++;
       } else if (args[i] != null) {
-        rootUrlFile = new File(args[i]);
+        rootUrlDir = new File(args[i]);
       }
     }
 
@@ -81,7 +81,7 @@
     }
 
     LOG.info("crawl started in: " + dir);
-    LOG.info("rootUrlFile = " + rootUrlFile);
+    LOG.info("rootUrlDir = " + rootUrlDir);
     LOG.info("threads = " + threads);
     LOG.info("depth = " + depth);
 
@@ -94,7 +94,7 @@
     File index = new File(dir + "/indexes");
       
     // initialize crawlDb
-    new Injector(conf).inject(crawlDb, rootUrlFile);
+    new Injector(conf).inject(crawlDb, rootUrlDir);
       
     for (int i = 0; i < depth; i++) {             // generate new segment
       File segment =
Index: src/java/org/apache/nutch/fs/NDFSFileSystem.java
===================================================================
--- src/java/org/apache/nutch/fs/NDFSFileSystem.java	(revision 320901)
+++ src/java/org/apache/nutch/fs/NDFSFileSystem.java	(working copy)
@@ -25,8 +25,9 @@
 import org.apache.nutch.util.NutchConf;
 
 /****************************************************************
- * Implement the NutchFileSystem interface for the NDFS system.
- *
+ * Implementation of the abstract NutchFileSystem for the NDFS system.
+ * This is the distributed file system.  It can be distributed over
+ * 1 or more machines 
  * @author Mike Cafarella
  *****************************************************************/
 public class NDFSFileSystem extends NutchFileSystem {
Index: src/java/org/apache/nutch/mapred/JobConf.java
===================================================================
--- src/java/org/apache/nutch/mapred/JobConf.java	(revision 320901)
+++ src/java/org/apache/nutch/mapred/JobConf.java	(working copy)
@@ -52,7 +52,7 @@
 
   /** Construct a map/reduce job configuration.
    *
-   * @param confg a NutchConf whose settings will be inherited.
+   * @param conf a NutchConf whose settings will be inherited.
    */
   public JobConf(NutchConf conf) {
     super(conf);
Index: src/java/org/apache/nutch/fs/NutchFileSystem.java
===================================================================
--- src/java/org/apache/nutch/fs/NutchFileSystem.java	(revision 320901)
+++ src/java/org/apache/nutch/fs/NutchFileSystem.java	(working copy)
@@ -24,16 +24,21 @@
 import org.apache.nutch.util.*;
 
 /****************************************************************
- * NutchFileSystem is an interface for a fairly simple
- * distributed file system.  A Nutch installation might consist
+ * An abstract base class for a fairly simple
+ * distributed file system.
+ * A Nutch installation might consist
  * of multiple machines, which should swap files transparently.
  * This interface allows other Nutch systems to find and place
  * files into the distributed Nutch-controlled file world.
- *
+ * <p>
+ * A local implementation exists for testing and for small Nutch instances.
+ * <p>
  * The standard job of NutchFileSystem is to take the location-
  * independent NutchFile objects, and resolve them using local
  * knowledge and local instances of ShareGroup.
- * 
+ * <p>
+ * The local implementation is {@link LocalFileSystem} and distributed
+ * implementation is {@link NDFSFileSystem}.
  * @author Mike Cafarella
  *****************************************************************/
 public abstract class NutchFileSystem {
Index: src/java/org/apache/nutch/mapred/JobConf.java
===================================================================
--- src/java/org/apache/nutch/mapred/JobConf.java	(revision 320901)
+++ src/java/org/apache/nutch/mapred/JobConf.java	(working copy)
@@ -52,7 +52,7 @@
 
   /** Construct a map/reduce job configuration.
    *
-   * @param confg a NutchConf whose settings will be inherited.
+   * @param conf a NutchConf whose settings will be inherited.
    */
   public JobConf(NutchConf conf) {
     super(conf);
Index: src/java/org/apache/nutch/ndfs/NDFSClient.java
===================================================================
--- src/java/org/apache/nutch/ndfs/NDFSClient.java	(revision 320901)
+++ src/java/org/apache/nutch/ndfs/NDFSClient.java	(working copy)
@@ -26,9 +26,8 @@
 import java.util.logging.*;
 
 /********************************************************
- * NDFSClient does what's necessary to connect to a Nutch Filesystem
- * and perform basic file tasks.
- *
+ * NDFSClient can connect to a Nutch Filesystem and perform basic file tasks.
+ * Connects to a namenode daemon.
  * @author Mike Cafarella, Tessa MacDuff
  ********************************************************/
 public class NDFSClient implements FSConstants {
@@ -41,7 +40,7 @@
     Daemon leaseChecker;
 
 
-    /**
+    /** Create a new NDFSClient connected to the given namenode server.
      */
     public NDFSClient(InetSocketAddress nameNodeAddr) {
         this.namenode = (ClientProtocol) RPC.getProxy(ClientProtocol.class, nameNodeAddr);
@@ -154,6 +153,7 @@
     }
 
     /**
+     *
      */
     public void release(UTF8 src) throws IOException {
         boolean hasReleased = false;
@@ -186,8 +186,8 @@
     }
 
     /***************************************************************
-     * If any leases are outstanding, periodically check in with the 
-     * namenode and renew all the leases.
+     * Periodically check in with the namenode and renew all the leases
+     * when the lease period is half over.
      ***************************************************************/
     class LeaseChecker implements Runnable {
         /**
Index: src/java/org/apache/nutch/ndfs/DatanodeInfo.java
===================================================================
--- src/java/org/apache/nutch/ndfs/DatanodeInfo.java	(revision 320901)
+++ src/java/org/apache/nutch/ndfs/DatanodeInfo.java	(working copy)
@@ -27,11 +27,11 @@
  * @author Mike Cafarella
  **************************************************/
 public class DatanodeInfo implements Writable, Comparable {
-    UTF8 name;
-    long capacity, remaining, lastUpdate;
-    volatile TreeSet blocks;
+    private UTF8 name;
+    private long capacityBytes, remainingBytes, lastUpdate;
+    private volatile TreeSet blocks;
 
-    /**
+    /** Create an empty DatanodeInfo.
      */
     public DatanodeInfo() {
         this(new UTF8(), 0, 0);
@@ -37,9 +37,11 @@
         this(new UTF8(), 0, 0);
     }
 
+   /**
+    * @param name hostname:portNumber as UTF8 object.
+    */
     public DatanodeInfo(UTF8 name) {
         this.name = name;
-        int colon = name.toString().indexOf(":");
         this.blocks = new TreeSet();
         updateHeartbeat(0, 0);        
     }
@@ -44,8 +46,9 @@
         updateHeartbeat(0, 0);        
     }
 
-    /**
-     */
+   /**
+    * @param name hostname:portNumber as UTF8 object.
+    */
     public DatanodeInfo(UTF8 name, long capacity, long remaining) {
         this.name = name;
         this.blocks = new TreeSet();
@@ -52,8 +55,8 @@
         updateHeartbeat(capacity, remaining);
     }
 
-    /**
-     */
+   /**
+    */
     public void updateBlocks(Block newBlocks[]) {
         blocks.clear();
         for (int i = 0; i < newBlocks.length; i++) {
@@ -61,8 +64,8 @@
         }
     }
 
-    /**
-     */
+   /**
+    */
     public void addBlock(Block b) {
         blocks.add(b);
     }
@@ -70,13 +73,21 @@
     /**
      */
     public void updateHeartbeat(long capacity, long remaining) {
-        this.capacity = capacity;
-        this.remaining = remaining;
+        this.capacityBytes = capacity;
+        this.remainingBytes = remaining;
         this.lastUpdate = System.currentTimeMillis();
     }
+
+    /**
+     * @return hostname:portNumber as UTF8 object.
+     */
     public UTF8 getName() {
         return name;
     }
+
+    /**
+     * @return hostname and no :portNumber as UTF8 object.
+     */
     public UTF8 getHost() {
         String nameStr = name.toString();
         int colon = nameStr.indexOf(":");
@@ -96,10 +107,10 @@
         return blocks.iterator();
     }
     public long getCapacity() {
-        return capacity;
+        return capacityBytes;
     }
     public long getRemaining() {
-        return remaining;
+        return remainingBytes;
     }
     public long lastUpdate() {
         return lastUpdate;
@@ -105,9 +116,11 @@
         return lastUpdate;
     }
 
-    /////////////////////////////////////////////////
-    // Comparable
-    /////////////////////////////////////////////////
+  /** Comparable.
+   * Basis of compare is the UTF8 name (host:portNumber) only.
+   * @param o
+   * @return as specified by Comparable.
+   */
     public int compareTo(Object o) {
         DatanodeInfo d = (DatanodeInfo) o;
         return name.compareTo(d.getName());
@@ -120,8 +133,8 @@
      */
     public void write(DataOutput out) throws IOException {
         name.write(out);
-        out.writeLong(capacity);
-        out.writeLong(remaining);
+        out.writeLong(capacityBytes);
+        out.writeLong(remainingBytes);
         out.writeLong(lastUpdate);
 
         /**
@@ -137,8 +150,8 @@
     public void readFields(DataInput in) throws IOException {
         this.name = new UTF8();
         this.name.readFields(in);
-        this.capacity = in.readLong();
-        this.remaining = in.readLong();
+        this.capacityBytes = in.readLong();
+        this.remainingBytes = in.readLong();
         this.lastUpdate = in.readLong();
 
         /**
